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Full Log inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/OMEZarrReader.jar
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01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/spring-core.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/spring-expression.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/spring-jdbc.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/spring-jms.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/spring-ldap-core.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/spring-messaging.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/spring-orm.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/spring-security-core.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/spring-security-ldap.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/spring-tx.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/sqlite-jdbc.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/subethasmtp.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/testng.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/turbojpeg.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/udunits.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/xalan.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/xercesImpl.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/xml-apis-ext.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/xml-apis.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/xmlgraphics-commons.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/xmpcore.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/lib/server/xpp3.jar
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/README
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/agpl.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/antlr.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/apache-v1.1.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/apache-v2.0.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/asm.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/bouncy_castle_license.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/bsd.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/cddl-v1.0.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/cpl-v10.html
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/crystalclear.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/django.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/dom4j.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/epl-v1.0.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/fbsd.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/freemarker.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/gpl-v2.0.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/gpl.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/gtest.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/iconsweets_license.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/jamon.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/jmock.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/jquery.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/jtidy.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/lgpl-3.0.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/lgpl-v2.0.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/lgpl-v2.1.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/lgpl-v3.0.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/lgpl.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/matplotlib.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/mit.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/mpl-v1_0.htm
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/npl-1_1.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/path.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/pil.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/postgresql.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/psf-v2.0.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/psf-v2.5.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/scons.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/slf4j.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/tablelayout.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/which.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/zlib-libpng.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/share/licenses/zpl-v2.1.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/README.txt
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/misc/Makefile
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/misc/current.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/misc/enums.py
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.4__0/psql-header.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.4__0/schema.sql
01:08:32 inflating: OMERO.server-5.6.3-471-e64f1de23b-ice36/sql/psql/OMERO5.4__0/views.sql
01:08:32 + rm -f OMERO.server-5.6.3-471-e64f1de23b-ice36.zip
01:08:32 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-471-e64f1de23b-ice36 /home/omero/workspace/OMERO-training/OMERO.server
01:08:32 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
01:08:32 ++ deactivate nondestructive
01:08:32 ++ '[' -n '' ']'
01:08:32 ++ '[' -n '' ']'
01:08:32 ++ '[' -n /bin/bash -o -n '' ']'
01:08:32 ++ hash -r
01:08:32 ++ '[' -n '' ']'
01:08:32 ++ unset VIRTUAL_ENV
01:08:32 ++ '[' '!' nondestructive = nondestructive ']'
01:08:32 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
01:08:32 ++ export VIRTUAL_ENV
01:08:32 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:08:32 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:08:32 ++ export PATH
01:08:32 ++ '[' -n '' ']'
01:08:32 ++ '[' -z '' ']'
01:08:32 ++ _OLD_VIRTUAL_PS1=
01:08:32 ++ PS1='(.venv3) '
01:08:32 ++ export PS1
01:08:32 ++ '[' -n /bin/bash -o -n '' ']'
01:08:32 ++ hash -r
01:08:32 + for x in *.gz
01:08:32 + pip install omero_dropbox-5.7.1.dev0.tar.gz
01:08:33 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
01:08:33 Installing build dependencies: started
01:08:35 Installing build dependencies: finished with status 'done'
01:08:35 Getting requirements to build wheel: started
01:08:35 Getting requirements to build wheel: finished with status 'done'
01:08:35 Installing backend dependencies: started
01:08:36 Installing backend dependencies: finished with status 'done'
01:08:36 Preparing metadata (pyproject.toml): started
01:08:36 Preparing metadata (pyproject.toml): finished with status 'done'
01:08:36 Collecting omero-py (from omero-dropbox==5.7.1.dev0)
01:08:36 Using cached omero_py-5.19.2-py3-none-any.whl.metadata (6.6 kB)
01:08:36 Collecting urllib3<2 (from omero-py->omero-dropbox==5.7.1.dev0)
01:08:36 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
01:08:36 Collecting appdirs (from omero-py->omero-dropbox==5.7.1.dev0)
01:08:36 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:08:36 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
01:08:36 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.0.0)
01:08:37 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.7.1.dev0)
01:08:37 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
01:08:37 Collecting PyYAML (from omero-py->omero-dropbox==5.7.1.dev0)
01:08:37 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
01:08:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
01:08:37 Collecting requests (from omero-py->omero-dropbox==5.7.1.dev0)
01:08:37 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
01:08:37 Collecting portalocker (from omero-py->omero-dropbox==5.7.1.dev0)
01:08:37 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
01:08:37 Collecting charset-normalizer<4,>=2 (from requests->omero-py->omero-dropbox==5.7.1.dev0)
01:08:37 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
01:08:37 Collecting idna<4,>=2.5 (from requests->omero-py->omero-dropbox==5.7.1.dev0)
01:08:37 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
01:08:37 Collecting certifi>=2017.4.17 (from requests->omero-py->omero-dropbox==5.7.1.dev0)
01:08:37 Using cached certifi-2024.6.2-py3-none-any.whl.metadata (2.2 kB)
01:08:37 Using cached omero_py-5.19.2-py3-none-any.whl (2.8 MB)
01:08:37 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
01:08:37 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
01:08:37 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:08:37 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
01:08:37 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
01:08:37 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
01:08:38 Using cached certifi-2024.6.2-py3-none-any.whl (164 kB)
01:08:38 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
01:08:38 Using cached idna-3.7-py3-none-any.whl (66 kB)
01:08:38 Building wheels for collected packages: omero-dropbox
01:08:38 Building wheel for omero-dropbox (pyproject.toml): started
01:08:38 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:08:38 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49057 sha256=8e7add9deaae2346ab0c5e202edbf9696435312c819e908ee164d4b926272145
01:08:38 Stored in directory: /home/omero/.cache/pip/wheels/bf/d5/e6/f9ce2a82150e14b9e7522fb513839bd2a1b13c6062416a8e2b
01:08:38 Successfully built omero-dropbox
01:08:38 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, Pillow, idna, charset-normalizer, certifi, requests, omero-py, omero-dropbox
01:08:42 Successfully installed Pillow-10.3.0 PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.6.2 charset-normalizer-3.3.2 idna-3.7 omero-dropbox-5.7.1.dev0 omero-py-5.19.2 portalocker-2.8.2 requests-2.32.3 urllib3-1.26.18
01:08:43 + for x in *.gz
01:08:43 + pip install omero_marshal-0.9.1.dev0.tar.gz
01:08:43 Processing ./omero_marshal-0.9.1.dev0.tar.gz
01:08:43 Installing build dependencies: started
01:08:46 Installing build dependencies: finished with status 'done'
01:08:46 Getting requirements to build wheel: started
01:08:46 Getting requirements to build wheel: finished with status 'done'
01:08:46 Installing backend dependencies: started
01:08:47 Installing backend dependencies: finished with status 'done'
01:08:47 Preparing metadata (pyproject.toml): started
01:08:48 Preparing metadata (pyproject.toml): finished with status 'done'
01:08:48 Building wheels for collected packages: omero_marshal
01:08:48 Building wheel for omero_marshal (pyproject.toml): started
01:08:48 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:08:48 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=b80a84cedbad2a1535520bce80a73266d1137e7cbe7c4509cd83ceb0e334d7a6
01:08:48 Stored in directory: /home/omero/.cache/pip/wheels/59/ec/5f/1bab86e7a991990f9067dae7f233d91bdbbc8c516ecb5f0c35
01:08:48 Successfully built omero_marshal
01:08:48 Installing collected packages: omero_marshal
01:08:49 Successfully installed omero_marshal-0.9.1.dev0
01:08:49 + for x in *.gz
01:08:49 + pip install omero_py-5.19.3.dev0.tar.gz
01:08:49 Processing ./omero_py-5.19.3.dev0.tar.gz
01:08:50 Installing build dependencies: started
01:08:52 Installing build dependencies: finished with status 'done'
01:08:52 Getting requirements to build wheel: started
01:08:52 Getting requirements to build wheel: finished with status 'done'
01:08:52 Installing backend dependencies: started
01:08:53 Installing backend dependencies: finished with status 'done'
01:08:53 Preparing metadata (pyproject.toml): started
01:08:53 Preparing metadata (pyproject.toml): finished with status 'done'
01:08:53 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.26.18)
01:08:53 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.4.4)
01:08:53 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.0.0)
01:08:53 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (2.0.0)
01:08:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (10.3.0)
01:08:53 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (6.0.1)
01:08:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (3.6.5)
01:08:53 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (2.32.3)
01:08:53 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (2.8.2)
01:08:53 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (3.3.2)
01:08:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (3.7)
01:08:53 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (2024.6.2)
01:08:53 Building wheels for collected packages: omero-py
01:08:53 Building wheel for omero-py (pyproject.toml): started
01:08:54 Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:08:54 Created wheel for omero-py: filename=omero_py-5.19.3.dev0-py3-none-any.whl size=2782728 sha256=3c58b971055eec35d1b8962ed1fbbdcf521b64c732691be5be14e6bf46b21f28
01:08:54 Stored in directory: /home/omero/.cache/pip/wheels/06/e9/75/1a52171b195ebccc4c6985ce9f53bd8bba443768a04b32c95f
01:08:54 Successfully built omero-py
01:08:55 Installing collected packages: omero-py
01:08:55 Attempting uninstall: omero-py
01:08:55 Found existing installation: omero-py 5.19.2
01:08:55 Uninstalling omero-py-5.19.2:
01:08:55 Successfully uninstalled omero-py-5.19.2
01:08:57 Successfully installed omero-py-5.19.3.dev0
01:08:58 + for x in *.gz
01:08:58 + pip install omero_scripts-5.8.3.dev0.tar.gz
01:08:58 Processing ./omero_scripts-5.8.3.dev0.tar.gz
01:08:58 Installing build dependencies: started
01:09:01 Installing build dependencies: finished with status 'done'
01:09:01 Getting requirements to build wheel: started
01:09:01 Getting requirements to build wheel: finished with status 'done'
01:09:01 Installing backend dependencies: started
01:09:02 Installing backend dependencies: finished with status 'done'
01:09:02 Preparing metadata (pyproject.toml): started
01:09:02 Preparing metadata (pyproject.toml): finished with status 'done'
01:09:02 Building wheels for collected packages: omero-scripts
01:09:02 Building wheel for omero-scripts (pyproject.toml): started
01:09:03 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:09:03 Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116568 sha256=694a3c09cf656e6360307a010303dc9a6d96ce13e3f5526978f88de4aa240aac
01:09:03 Stored in directory: /home/omero/.cache/pip/wheels/56/c5/d9/bdc503f9ed03713a17b751129922ab527619a765fecd94c691
01:09:03 Successfully built omero-scripts
01:09:03 Installing collected packages: omero-scripts
01:09:03 Successfully installed omero-scripts-5.8.3.dev0
01:09:03 + for x in *.gz
01:09:03 + pip install omero_web-5.26.1.dev0.tar.gz
01:09:04 Processing ./omero_web-5.26.1.dev0.tar.gz
01:09:04 Installing build dependencies: started
01:09:06 Installing build dependencies: finished with status 'done'
01:09:06 Getting requirements to build wheel: started
01:09:06 Getting requirements to build wheel: finished with status 'done'
01:09:06 Installing backend dependencies: started
01:09:07 Installing backend dependencies: finished with status 'done'
01:09:07 Preparing metadata (pyproject.toml): started
01:09:08 Preparing metadata (pyproject.toml): finished with status 'done'
01:09:08 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (5.19.3.dev0)
01:09:08 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.26.1.dev0)
01:09:08 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
01:09:08 Collecting Django<4.3,>=4.2.3 (from omero-web==5.26.1.dev0)
01:09:08 Using cached Django-4.2.13-py3-none-any.whl.metadata (4.1 kB)
01:09:08 Collecting django-pipeline==2.1.0 (from omero-web==5.26.1.dev0)
01:09:08 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
01:09:08 Collecting django-cors-headers==3.7.0 (from omero-web==5.26.1.dev0)
01:09:08 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:09:08 Collecting django-csp (from omero-web==5.26.1.dev0)
01:09:08 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
01:09:08 Collecting whitenoise>=5.3.0 (from omero-web==5.26.1.dev0)
01:09:08 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
01:09:08 Collecting gunicorn>=19.3 (from omero-web==5.26.1.dev0)
01:09:08 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB)
01:09:08 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (0.9.1.dev0)
01:09:08 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (10.3.0)
01:09:09 Collecting pytz (from omero-web==5.26.1.dev0)
01:09:09 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
01:09:09 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (2.8.2)
01:09:09 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.26.1.dev0) (24.1)
01:09:09 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
01:09:09 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
01:09:09 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
01:09:09 Using cached sqlparse-0.5.0-py3-none-any.whl.metadata (3.9 kB)
01:09:09 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.26.18)
01:09:09 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.4.4)
01:09:09 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (1.0.0)
01:09:09 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (2.0.0)
01:09:09 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (6.0.1)
01:09:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.6.5)
01:09:09 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.26.1.dev0) (2.32.3)
01:09:09 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.26.1.dev0)
01:09:09 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
01:09:09 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.3.2)
01:09:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (3.7)
01:09:09 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.26.1.dev0) (2024.6.2)
01:09:09 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:09:09 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
01:09:09 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
01:09:09 Using cached Django-4.2.13-py3-none-any.whl (8.0 MB)
01:09:09 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB)
01:09:09 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
01:09:09 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
01:09:09 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
01:09:09 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
01:09:09 Using cached sqlparse-0.5.0-py3-none-any.whl (43 kB)
01:09:09 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
01:09:09 Building wheels for collected packages: omero-web
01:09:09 Building wheel for omero-web (pyproject.toml): started
01:09:11 Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:09:11 Created wheel for omero-web: filename=omero_web-5.26.1.dev0-py3-none-any.whl size=2763315 sha256=26c49b901a1a9cd9175b88013ed8d530f311da97e4fb1878cb132f48bfbd0722
01:09:11 Stored in directory: /home/omero/.cache/pip/wheels/d0/86/4a/17177b5d97f0092b5109d44dd14549335bef1c4df514308af6
01:09:11 Successfully built omero-web
01:09:11 Installing collected packages: pytz, django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
01:09:14 Successfully installed Django-4.2.13 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.26.1.dev0 pytz-2024.1 sqlparse-0.5.0 typing-extensions-4.12.2 whitenoise-6.6.0
01:09:14 + cd /home/omero/workspace/OMERO-training/OMERO.server
01:09:14 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
01:09:14 + HOSTNAME=0af814a76df9
01:09:14 + PORT=4064
01:09:14 + WEBHOST=http://nginx/web
01:09:14 + SERVER_NAME=omero
01:09:14 + ROOT_PASSWORD=omero
01:09:14 + GROUP_NAME=training_group
01:09:14 + GROUP_NAME_2=training_group-2
01:09:14 + USER_NAME=training_user
01:09:14 + USER_NAME_2=training_user-2
01:09:14 + LIGHTADMIN_USER_NAME=ladmin_user
01:09:14 + USER_PASSWORD=ome
01:09:14 + CONFIG_FILENAME=training_ice.config
01:09:14 + omero login root@0af814a76df9:4064 -w omero
01:09:16 Created session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
01:09:16 + omero group add training_group --type read-only --ignore-existing
01:09:17 Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
01:09:17 Group exists: training_group (id=3)
01:09:17 + omero group add training_group-2 --type read-only --ignore-existing
01:09:18 Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
01:09:18 Group exists: training_group-2 (id=4)
01:09:19 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
01:09:19 Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
01:09:20 User exists: training_user (id=2)
01:09:20 + omero user joingroup --name training_user --group-name training_group training_group-2
01:09:21 Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
01:09:21 2 is already in group 3
01:09:21 2 is already in group 4
01:09:21 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
01:09:22 Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
01:09:22 User exists: training_user-2 (id=3)
01:09:22 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
01:09:23 Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
01:09:23 3 is already in group 3
01:09:23 3 is already in group 4
01:09:24 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
01:09:25 Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
01:09:25 User exists: ladmin_user (id=4)
01:09:25 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
01:09:26 Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
01:09:26 4 is already in group 3
01:09:26 4 is already in group 4
01:09:26 ++ omero user info ladmin_user --style plain
01:09:26 ++ cut -d, -f1
01:09:27 Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
01:09:28 + id=4
01:09:28 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
01:09:29 Using session for root@0af814a76df9:4064. Idle timeout: 10 min. Current group: system
01:09:29 Experimenter:4
01:09:29 + omero logout
01:09:31 + touch test.fake
01:09:31 + omero login training_user@0af814a76df9:4064 -w ome -g training_group
01:09:32 Created session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:09:32 + nProjects=1
01:09:32 + nDatasets=2
01:09:32 + echo 'Creating projects and datasets'
01:09:32 Creating projects and datasets
01:09:32 + (( i=1 ))
01:09:32 + (( i<=1 ))
01:09:32 ++ omero obj new Project 'name=Project 1'
01:09:33 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:09:34 + project=Project:4401
01:09:34 + (( j=1 ))
01:09:34 + (( j<=2 ))
01:09:34 ++ omero obj new Dataset 'name=Dataset 1-1'
01:09:35 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:09:36 + dataset=Dataset:4451
01:09:36 + omero obj new ProjectDatasetLink parent=Project:4401 child=Dataset:4451
01:09:37 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:09:37 ProjectDatasetLink:4401
01:09:37 + echo 'Importing image into dataset'
01:09:37 Importing image into dataset
01:09:37 + omero import -d Dataset:4451 test.fake --debug ERROR
01:09:38 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:09:39 2024-06-17 01:09:39,153 395 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.4-SNAPSHOT
01:09:39 2024-06-17 01:09:39,177 419 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 795cc007a1a2196d7516ba1134ca18f775ba5bb5 date: 17 June 2024
01:09:50 Image:7251
01:09:50 Other imported objects:
01:09:50 Fileset:6051
01:09:50
01:09:50 ==> Summary
01:09:50 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:09.005
01:09:51 + (( j++ ))
01:09:51 + (( j<=2 ))
01:09:51 ++ omero obj new Dataset 'name=Dataset 1-2'
01:09:52 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:09:52 + dataset=Dataset:4452
01:09:52 + omero obj new ProjectDatasetLink parent=Project:4401 child=Dataset:4452
01:09:53 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:09:53 ProjectDatasetLink:4402
01:09:53 + echo 'Importing image into dataset'
01:09:53 Importing image into dataset
01:09:53 + omero import -d Dataset:4452 test.fake --debug ERROR
01:09:54 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:09:55 2024-06-17 01:09:55,256 264 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.4-SNAPSHOT
01:09:55 2024-06-17 01:09:55,278 286 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 795cc007a1a2196d7516ba1134ca18f775ba5bb5 date: 17 June 2024
01:09:58 Image:7252
01:09:58 Other imported objects:
01:09:58 Fileset:6052
01:09:58
01:09:58 ==> Summary
01:09:58 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.775
01:09:58 + (( j++ ))
01:09:58 + (( j<=2 ))
01:09:58 + (( i++ ))
01:09:58 + (( i<=1 ))
01:09:58 + (( j=1 ))
01:09:58 + (( j<=2 ))
01:09:58 + omero obj new Dataset 'name=Orphaned dataset 1'
01:09:59 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:09:59 Dataset:4453
01:10:00 + (( j++ ))
01:10:00 + (( j<=2 ))
01:10:00 + omero obj new Dataset 'name=Orphaned dataset 2'
01:10:01 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:10:01 Dataset:4454
01:10:01 + (( j++ ))
01:10:01 + (( j<=2 ))
01:10:01 + echo 'Importing image file'
01:10:01 Importing image file
01:10:01 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:10:01 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:10:07 ++ sed -n -e 's/^Image://p' image_import.log
01:10:07 + imageid=7253
01:10:07 ++ omero obj new MapAnnotation
01:10:11 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:10:11 + MAP=MapAnnotation:6051
01:10:11 + omero obj map-set MapAnnotation:6051 mapValue testkey testvalue
01:10:12 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:10:13 MapAnnotation:6051
01:10:14 + omero obj new ImageAnnotationLink parent=Image:7253 child=MapAnnotation:6051
01:10:15 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:10:15 ImageAnnotationLink:5051
01:10:15 ++ omero obj new Screen name=Screen
01:10:16 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:10:16 + screen=Screen:4301
01:10:16 ++ omero obj new Plate name=Plate
01:10:18 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:10:18 + plate=Plate:4401
01:10:18 + omero obj new ScreenPlateLink parent=Screen:4301 child=Plate:4401
01:10:19 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:10:19 ScreenPlateLink:4301
01:10:20 + echo 'Importing SPW file'
01:10:20 Importing SPW file
01:10:20 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
01:10:20 + omero import -r Screen:4301 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
01:10:27 ++ sed -n -e 's/^Plate://p' plate_import.log
01:10:27 + plateid=4402
01:10:27 + omero logout
01:10:28 + omero login training_user-2@0af814a76df9:4064 -w ome -g training_group
01:10:30 Created session for training_user-2@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:10:30 + omero obj new Project 'name=Project 0'
01:10:31 Using session for training_user-2@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:10:31 Project:4402
01:10:32 + omero obj new Dataset 'name=Dataset 0'
01:10:33 Using session for training_user-2@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:10:33 Dataset:4455
01:10:34 + omero import test.fake --debug ERROR
01:10:35 Using session for training_user-2@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:10:35 2024-06-17 01:10:35,977 416 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.4-SNAPSHOT
01:10:36 2024-06-17 01:10:36,021 460 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 795cc007a1a2196d7516ba1134ca18f775ba5bb5 date: 17 June 2024
01:10:40 Image:7257
01:10:40 Other imported objects:
01:10:40 Fileset:6055
01:10:40
01:10:40 ==> Summary
01:10:40 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:02.227
01:10:40 + omero obj new Screen name=Screen
01:10:41 Using session for training_user-2@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:10:41 Screen:4302
01:10:41 + omero obj new Plate name=Plate
01:10:42 Using session for training_user-2@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group
01:10:42 Plate:4403
01:10:43 + omero login training_user@0af814a76df9:4064 -w ome -g training_group-2
01:10:43 Created session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group-2
01:10:44 + omero obj new Project 'name=Project 0'
01:10:45 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group-2
01:10:45 Project:4403
01:10:45 + omero obj new Dataset 'name=Dataset 0'
01:10:46 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group-2
01:10:46 Dataset:4456
01:10:46 + omero import test.fake --debug ERROR
01:10:47 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group-2
01:10:48 2024-06-17 01:10:48,455 316 [ main] INFO ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.7.4-SNAPSHOT
01:10:48 2024-06-17 01:10:48,476 337 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 8.0.0-SNAPSHOT revision: 795cc007a1a2196d7516ba1134ca18f775ba5bb5 date: 17 June 2024
01:10:52 Image:7258
01:10:52 Other imported objects:
01:10:52 Fileset:6056
01:10:52
01:10:52 ==> Summary
01:10:52 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:02.052
01:10:52 + omero obj new Screen name=Screen
01:10:53 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group-2
01:10:53 Screen:4303
01:10:54 + omero obj new Plate name=Plate
01:10:55 Using session for training_user@0af814a76df9:4064. Idle timeout: 10 min. Current group: training_group-2
01:10:55 Plate:4404
01:10:55 + omero logout
01:10:58 + echo omero.host=0af814a76df9
01:10:58 + echo omero.port=4064
01:10:58 + echo omero.webhost=http://nginx/web
01:10:58 + echo omero.servername=omero
01:10:58 + echo omero.user=training_user
01:10:58 + echo omero.pass=ome
01:10:58 + echo omero.group=training_group
01:10:58 + echo omero.projectid=4401
01:10:58 + echo omero.datasetid=4452
01:10:58 + echo omero.imageid=7253
01:10:58 + echo omero.plateid=4402
01:10:58 + echo omero.screenid=4301
01:10:58 + echo omero.group2=training_group-2
01:10:58 + echo omero.ladmin=ladmin_user
01:10:58 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:10:58 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
01:10:58 + omero sessions clear
01:10:59 1 session(s) cleared
01:10:59 !! 06/17/24 01:10:59.545 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:10:59 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:10:59 + pip install --upgrade requests
01:11:00 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (2.32.3)
01:11:00 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.3.2)
01:11:00 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (3.7)
01:11:00 Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (1.26.18)
01:11:00 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib/python3.9/site-packages (from requests) (2024.6.2)
01:11:00 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
01:11:13 Running training suite
01:11:13 created 20 shapes
01:11:13 retrieved 20 shapes in 4 batches
01:11:13 Current user:
01:11:13 ID: 2
01:11:13 Username: training_user
01:11:13 Full Name: training_user training_user
01:11:13 Is Admin: False
01:11:13 []
01:11:13 Member of:
01:11:13 ID: 3 Name: training_group
01:11:13 ID: 4 Name: training_group-2
01:11:13 Current group: training_group
01:11:13 Group owners:
01:11:13 Group members:
01:11:13 ID: 2 UserName: training_user Name: training_user training_user
01:11:13 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:11:13 ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
01:11:13 Owner of:
01:11:13 Admins:
01:11:13 ID: 113 UserName: <hidden> Name: <hidden> <hidden>
01:11:13 ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:11:13 ID: 107 UserName: <hidden> Name: <hidden> <hidden>
01:11:13 ID: 119 UserName: <hidden> Name: <hidden> <hidden>
01:11:13 ID: 0 UserName: root Name: root root
01:11:13 Created new Image:7259 Name:"numpy image"
01:11:13 newPlane for z,t: 0 0 uint8 0 127
01:11:13 newPlane for z,t: 0 1 uint8 0 127
01:11:13 newPlane for z,t: 0 2 uint8 0 127
01:11:13 newPlane for z,t: 0 3 uint8 0 127
01:11:13 newPlane for z,t: 0 4 uint8 0 127
01:11:13 newPlane for z,t: 0 5 uint8 0 127
01:11:13 newPlane for z,t: 0 6 uint8 0 127
01:11:13 newPlane for z,t: 0 7 uint8 0 127
01:11:13 newPlane for z,t: 0 8 uint8 0 127
01:11:13 newPlane for z,t: 0 9 uint8 0 127
01:11:13 newPlane for z,t: 1 0 uint8 0 127
01:11:13 newPlane for z,t: 1 1 uint8 0 127
01:11:13 newPlane for z,t: 1 2 uint8 0 127
01:11:13 newPlane for z,t: 1 3 uint8 0 127
01:11:13 newPlane for z,t: 1 4 uint8 0 127
01:11:13 newPlane for z,t: 1 5 uint8 0 127
01:11:13 newPlane for z,t: 1 6 uint8 0 127
01:11:13 newPlane for z,t: 1 7 uint8 0 127
01:11:13 newPlane for z,t: 1 8 uint8 0 127
01:11:13 newPlane for z,t: 1 9 uint8 0 127
01:11:13 newPlane for z,t: 2 0 uint8 0 127
01:11:13 newPlane for z,t: 2 1 uint8 0 127
01:11:13 newPlane for z,t: 2 2 uint8 0 127
01:11:13 newPlane for z,t: 2 3 uint8 0 127
01:11:13 newPlane for z,t: 2 4 uint8 0 127
01:11:13 newPlane for z,t: 2 5 uint8 0 127
01:11:13 newPlane for z,t: 2 6 uint8 0 127
01:11:13 newPlane for z,t: 2 7 uint8 0 127
01:11:13 newPlane for z,t: 2 8 uint8 0 127
01:11:13 newPlane for z,t: 2 9 uint8 0 127
01:11:13 newPlane for z,t: 3 0 uint8 0 127
01:11:13 newPlane for z,t: 3 1 uint8 0 127
01:11:13 newPlane for z,t: 3 2 uint8 0 127
01:11:13 newPlane for z,t: 3 3 uint8 0 127
01:11:13 newPlane for z,t: 3 4 uint8 0 127
01:11:13 newPlane for z,t: 3 5 uint8 0 127
01:11:13 newPlane for z,t: 3 6 uint8 0 127
01:11:13 newPlane for z,t: 3 7 uint8 0 127
01:11:13 newPlane for z,t: 3 8 uint8 0 127
01:11:13 newPlane for z,t: 3 9 uint8 0 127
01:11:13 newPlane for z,t: 4 0 uint8 0 127
01:11:13 newPlane for z,t: 4 1 uint8 0 127
01:11:13 newPlane for z,t: 4 2 uint8 0 127
01:11:13 newPlane for z,t: 4 3 uint8 0 127
01:11:13 newPlane for z,t: 4 4 uint8 0 127
01:11:13 newPlane for z,t: 4 5 uint8 0 127
01:11:13 newPlane for z,t: 4 6 uint8 0 127
01:11:13 newPlane for z,t: 4 7 uint8 0 127
01:11:13 newPlane for z,t: 4 8 uint8 0 127
01:11:13 newPlane for z,t: 4 9 uint8 0 127
01:11:13 Deleting, please wait.
01:11:13 Error? False
01:11:13 7253 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:11:13 training_user_2/Blitz-0-Ice.ThreadPool.Server-12/2024-06/17/01-10-04.426/ test&sizeT=10&sizeZ=5&sizeC=3.fake
01:11:13 1
01:11:13 training_user_2/Blitz-0-Ice.ThreadPool.Server-12/2024-06/17/01-10-04.426/ test&sizeT=10&sizeZ=5&sizeC=3.fake
01:11:13 Current group: training_group
01:11:13 Permissions: READ-ONLY (rwr---)
01:11:13 Project 1 Owner: training_user training_user
01:11:13 Project 0 Owner: training_user-2 training_user-2
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01:11:13 Project 0 Owner: training_user-2 training_user-2
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01:11:17 Project 0 Owner: training_user-2 training_user-2
01:11:17 Image: <_ImageWrapper id=7253>
01:11:17 Image: <_ImageWrapper id=7253> Group: training_group 3
01:11:17 Image: <_ImageWrapper id=7253> Channel: 0
01:11:17 Channel: 1
01:11:17 Channel: 2
01:11:17
01:11:17
01:11:17 original_metadata
01:11:17 global_metadata
01:11:17 series_metadata
01:11:17
01:11:17 Plane at zct: 0 0 0
01:11:17 [[ 0 0 0 ... 253 254 255]
01:11:17 [ 0 0 0 ... 253 254 255]
01:11:17 [ 0 0 0 ... 253 254 255]
01:11:17 ...
01:11:17 [ 0 1 2 ... 253 254 255]
01:11:17 [ 0 1 2 ... 253 254 255]
01:11:17 [ 0 1 2 ... 253 254 255]]
01:11:17 shape: (512, 512)
01:11:17 min: 0 max: 255 pixel type: uint8
01:11:17
01:11:17 Z stack of tiles:
01:11:17 Tile: (0, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:11:17 Tile: (1, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:11:17 Tile: (2, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:11:17 Tile: (3, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:11:17 Tile: (4, 0, 0, (50, 50, 10, 10)) min: 50 max: 59 sum: 5450
01:11:17
01:11:17 Hyper stack of planes:
01:11:17 plane zct: (2, 0, 0) min: 0 max: 255
01:11:17 plane zct: (2, 0, 1) min: 0 max: 255
01:11:17 plane zct: (2, 0, 2) min: 0 max: 255
01:11:17 plane zct: (2, 0, 3) min: 0 max: 255
01:11:17 plane zct: (2, 0, 4) min: 0 max: 255
01:11:17 plane zct: (2, 0, 5) min: 0 max: 255
01:11:17 plane zct: (2, 0, 6) min: 0 max: 255
01:11:17 plane zct: (2, 0, 7) min: 0 max: 255
01:11:17 plane zct: (2, 0, 8) min: 0 max: 255
01:11:17 plane zct: (2, 0, 9) min: 0 max: 255
01:11:17 plane zct: (2, 1, 0) min: 0 max: 255
01:11:17 plane zct: (2, 1, 1) min: 0 max: 255
01:11:17 plane zct: (2, 1, 2) min: 0 max: 255
01:11:17 plane zct: (2, 1, 3) min: 0 max: 255
01:11:17 plane zct: (2, 1, 4) min: 0 max: 255
01:11:17 plane zct: (2, 1, 5) min: 0 max: 255
01:11:17 plane zct: (2, 1, 6) min: 0 max: 255
01:11:17 plane zct: (2, 1, 7) min: 0 max: 255
01:11:17 plane zct: (2, 1, 8) min: 0 max: 255
01:11:17 plane zct: (2, 1, 9) min: 0 max: 255
01:11:17 plane zct: (2, 2, 0) min: 0 max: 255
01:11:17 plane zct: (2, 2, 1) min: 0 max: 255
01:11:17 plane zct: (2, 2, 2) min: 0 max: 255
01:11:17 plane zct: (2, 2, 3) min: 0 max: 255
01:11:17 plane zct: (2, 2, 4) min: 0 max: 255
01:11:17 plane zct: (2, 2, 5) min: 0 max: 255
01:11:17 plane zct: (2, 2, 6) min: 0 max: 255
01:11:17 plane zct: (2, 2, 7) min: 0 max: 255
01:11:17 plane zct: (2, 2, 8) min: 0 max: 255
01:11:17 plane zct: (2, 2, 9) min: 0 max: 255
01:11:17 plane zct: (3, 0, 0) min: 0 max: 255
01:11:17 plane zct: (3, 0, 1) min: 0 max: 255
01:11:17 plane zct: (3, 0, 2) min: 0 max: 255
01:11:17 plane zct: (3, 0, 3) min: 0 max: 255
01:11:17 plane zct: (3, 0, 4) min: 0 max: 255
01:11:17 plane zct: (3, 0, 5) min: 0 max: 255
01:11:17 plane zct: (3, 0, 6) min: 0 max: 255
01:11:17 plane zct: (3, 0, 7) min: 0 max: 255
01:11:17 plane zct: (3, 0, 8) min: 0 max: 255
01:11:17 plane zct: (3, 0, 9) min: 0 max: 255
01:11:17 plane zct: (3, 1, 0) min: 0 max: 255
01:11:17 plane zct: (3, 1, 1) min: 0 max: 255
01:11:17 plane zct: (3, 1, 2) min: 0 max: 255
01:11:17 plane zct: (3, 1, 3) min: 0 max: 255
01:11:17 plane zct: (3, 1, 4) min: 0 max: 255
01:11:17 plane zct: (3, 1, 5) min: 0 max: 255
01:11:17 plane zct: (3, 1, 6) min: 0 max: 255
01:11:17 plane zct: (3, 1, 7) min: 0 max: 255
01:11:17 plane zct: (3, 1, 8) min: 0 max: 255
01:11:17 plane zct: (3, 1, 9) min: 0 max: 255
01:11:17 plane zct: (3, 2, 0) min: 0 max: 255
01:11:17 plane zct: (3, 2, 1) min: 0 max: 255
01:11:17 plane zct: (3, 2, 2) min: 0 max: 255
01:11:17 plane zct: (3, 2, 3) min: 0 max: 255
01:11:17 plane zct: (3, 2, 4) min: 0 max: 255
01:11:17 plane zct: (3, 2, 5) min: 0 max: 255
01:11:17 plane zct: (3, 2, 6) min: 0 max: 255
01:11:17 plane zct: (3, 2, 7) min: 0 max: 255
01:11:17 plane zct: (3, 2, 8) min: 0 max: 255
01:11:17 plane zct: (3, 2, 9) min: 0 max: 255
01:11:17 plane zct: (4, 0, 0) min: 0 max: 255
01:11:17 plane zct: (4, 0, 1) min: 0 max: 255
01:11:17 plane zct: (4, 0, 2) min: 0 max: 255
01:11:17 plane zct: (4, 0, 3) min: 0 max: 255
01:11:17 plane zct: (4, 0, 4) min: 0 max: 255
01:11:17 plane zct: (4, 0, 5) min: 0 max: 255
01:11:17 plane zct: (4, 0, 6) min: 0 max: 255
01:11:17 plane zct: (4, 0, 7) min: 0 max: 255
01:11:17 plane zct: (4, 0, 8) min: 0 max: 255
01:11:17 plane zct: (4, 0, 9) min: 0 max: 255
01:11:17 plane zct: (4, 1, 0) min: 0 max: 255
01:11:17 plane zct: (4, 1, 1) min: 0 max: 255
01:11:17 plane zct: (4, 1, 2) min: 0 max: 255
01:11:17 plane zct: (4, 1, 3) min: 0 max: 255
01:11:17 plane zct: (4, 1, 4) min: 0 max: 255
01:11:17 plane zct: (4, 1, 5) min: 0 max: 255
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01:11:17 plane zct: (4, 1, 7) min: 0 max: 255
01:11:17 plane zct: (4, 1, 8) min: 0 max: 255
01:11:17 plane zct: (4, 1, 9) min: 0 max: 255
01:11:17 plane zct: (4, 2, 0) min: 0 max: 255
01:11:17 plane zct: (4, 2, 1) min: 0 max: 255
01:11:17 plane zct: (4, 2, 2) min: 0 max: 255
01:11:17 plane zct: (4, 2, 3) min: 0 max: 255
01:11:17 plane zct: (4, 2, 4) min: 0 max: 255
01:11:17 plane zct: (4, 2, 5) min: 0 max: 255
01:11:17 plane zct: (4, 2, 6) min: 0 max: 255
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01:11:17 plane zct: (4, 2, 8) min: 0 max: 255
01:11:17 plane zct: (4, 2, 9) min: 0 max: 255
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01:11:19
01:11:19 List Projects:
01:11:19 ==================================================
01:11:19 Project:1 Name:"Project 1" (owner=training_user)
01:11:19 Dataset:1 Name:"Dataset 1-1" (owner=training_user)
01:11:19 Image:1 Name:"test.fake" (owner=training_user)
01:11:19 Dataset:2 Name:"Dataset 1-2" (owner=training_user)
01:11:19 Image:12 Name:"New Image" (owner=training_user)
01:11:19 Image:13 Name:"newImageFrom3" (owner=training_user)
01:11:19 Image:2 Name:"test.fake" (owner=training_user)
01:11:19 Dataset:7 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:17 Name:"new Name 1" (owner=training_user)
01:11:19 Dataset:18 Name:"new Name 2" (owner=training_user)
01:11:19 Project:51 Name:"Project 1" (owner=training_user)
01:11:19 Dataset:51 Name:"Dataset 1-1" (owner=training_user)
01:11:19 Image:51 Name:"test.fake" (owner=training_user)
01:11:19 Dataset:52 Name:"Dataset 1-2" (owner=training_user)
01:11:19 Image:62 Name:"New Image" (owner=training_user)
01:11:19 Image:63 Name:"newImageFrom53" (owner=training_user)
01:11:19 Image:52 Name:"test.fake" (owner=training_user)
01:11:19 Dataset:57 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:67 Name:"new Name 1" (owner=training_user)
01:11:19 Dataset:68 Name:"new Name 2" (owner=training_user)
01:11:19 Project:101 Name:"Project 1" (owner=training_user)
01:11:19 Dataset:101 Name:"Dataset 1-1" (owner=training_user)
01:11:19 Image:101 Name:"test.fake" (owner=training_user)
01:11:19 Dataset:102 Name:"Dataset 1-2" (owner=training_user)
01:11:19 Image:112 Name:"New Image" (owner=training_user)
01:11:19 Image:113 Name:"newImageFrom103" (owner=training_user)
01:11:19 Image:102 Name:"test.fake" (owner=training_user)
01:11:19 Dataset:107 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:117 Name:"new Name 1" (owner=training_user)
01:11:19 Dataset:118 Name:"new Name 2" (owner=training_user)
01:11:19 Project:151 Name:"Project 1" (owner=training_user)
01:11:19 Dataset:151 Name:"Dataset 1-1" (owner=training_user)
01:11:19 Image:151 Name:"test.fake" (owner=training_user)
01:11:19 Dataset:152 Name:"Dataset 1-2" (owner=training_user)
01:11:19 Image:162 Name:"New Image" (owner=training_user)
01:11:19 Image:163 Name:"newImageFrom153" (owner=training_user)
01:11:19 Image:152 Name:"test.fake" (owner=training_user)
01:11:19 Dataset:157 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:167 Name:"new Name 1" (owner=training_user)
01:11:19 Dataset:168 Name:"new Name 2" (owner=training_user)
01:11:19 Project:301 Name:"Project 1" (owner=training_user)
01:11:19 Dataset:351 Name:"Dataset 1-1" (owner=training_user)
01:11:19 Image:2551 Name:"test.fake" (owner=training_user)
01:11:19 Dataset:352 Name:"Dataset 1-2" (owner=training_user)
01:11:19 Image:2562 Name:"New Image" (owner=training_user)
01:11:19 Image:2563 Name:"newImageFrom2553" (owner=training_user)
01:11:19 Image:2552 Name:"test.fake" (owner=training_user)
01:11:19 Dataset:357 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:367 Name:"new Name 1" (owner=training_user)
01:11:19 Dataset:368 Name:"new Name 2" (owner=training_user)
01:11:19
01:11:19 List orphaned Datasets:
01:11:19 ==================================================
01:11:19 Dataset:3 Name:"Orphaned dataset 1" (owner=training_user)
01:11:19 Dataset:4 Name:"Orphaned dataset 2" (owner=training_user)
01:11:19 Dataset:5 Name:"Dataset 0" (owner=training_user-2)
01:11:19 Dataset:53 Name:"Orphaned dataset 1" (owner=training_user)
01:11:19 Dataset:54 Name:"Orphaned dataset 2" (owner=training_user)
01:11:19 Dataset:55 Name:"Dataset 0" (owner=training_user-2)
01:11:19 Dataset:10 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:9 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:8 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:11 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:12 Name:"New Dataset2" (owner=training_user)
01:11:19 Dataset:13 Name:"FileAnnotationDelete" (owner=training_user)
01:11:19 Dataset:14 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:15 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:16 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:60 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:59 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:58 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:61 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:62 Name:"New Dataset2" (owner=training_user)
01:11:19 Dataset:63 Name:"FileAnnotationDelete" (owner=training_user)
01:11:19 Dataset:64 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:65 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:66 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:103 Name:"Orphaned dataset 1" (owner=training_user)
01:11:19 Dataset:104 Name:"Orphaned dataset 2" (owner=training_user)
01:11:19 Dataset:105 Name:"Dataset 0" (owner=training_user-2)
01:11:19 Dataset:110 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:109 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:108 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:111 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:112 Name:"New Dataset2" (owner=training_user)
01:11:19 Dataset:113 Name:"FileAnnotationDelete" (owner=training_user)
01:11:19 Dataset:114 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:115 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:116 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:153 Name:"Orphaned dataset 1" (owner=training_user)
01:11:19 Dataset:154 Name:"Orphaned dataset 2" (owner=training_user)
01:11:19 Dataset:155 Name:"Dataset 0" (owner=training_user-2)
01:11:19 Dataset:160 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:159 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:158 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:161 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:162 Name:"New Dataset2" (owner=training_user)
01:11:19 Dataset:163 Name:"FileAnnotationDelete" (owner=training_user)
01:11:19 Dataset:164 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:165 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:166 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:403 Name:"Orphaned dataset 1" (owner=training_user)
01:11:19 Dataset:404 Name:"Orphaned dataset 2" (owner=training_user)
01:11:19 Dataset:411 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:412 Name:"New Dataset2" (owner=training_user)
01:11:19 Dataset:405 Name:"Dataset 0" (owner=training_user-2)
01:11:19 Dataset:410 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:409 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:408 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:413 Name:"FileAnnotationDelete" (owner=training_user)
01:11:19 Dataset:414 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:415 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:416 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:453 Name:"Orphaned dataset 1" (owner=training_user)
01:11:19 Dataset:454 Name:"Orphaned dataset 2" (owner=training_user)
01:11:19 Dataset:455 Name:"Dataset 0" (owner=training_user-2)
01:11:19 Dataset:463 Name:"FileAnnotationDelete" (owner=training_user)
01:11:19 Dataset:364 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:365 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:366 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:353 Name:"Orphaned dataset 1" (owner=training_user)
01:11:19 Dataset:354 Name:"Orphaned dataset 2" (owner=training_user)
01:11:19 Dataset:355 Name:"Dataset 0" (owner=training_user-2)
01:11:19 Dataset:360 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:359 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:358 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:361 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:362 Name:"New Dataset2" (owner=training_user)
01:11:19 Dataset:363 Name:"FileAnnotationDelete" (owner=training_user)
01:11:19 Dataset:460 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:459 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:458 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:461 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:462 Name:"New Dataset2" (owner=training_user)
01:11:19 Dataset:464 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:465 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:466 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:1153 Name:"Orphaned dataset 1" (owner=training_user)
01:11:19 Dataset:1154 Name:"Orphaned dataset 2" (owner=training_user)
01:11:19 Dataset:503 Name:"Orphaned dataset 1" (owner=training_user)
01:11:19 Dataset:504 Name:"Orphaned dataset 2" (owner=training_user)
01:11:19 Dataset:505 Name:"Dataset 0" (owner=training_user-2)
01:11:19 Dataset:510 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:509 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:508 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:511 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:512 Name:"New Dataset2" (owner=training_user)
01:11:19 Dataset:513 Name:"FileAnnotationDelete" (owner=training_user)
01:11:19 Dataset:514 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:515 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:516 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:1155 Name:"Dataset 0" (owner=training_user-2)
01:11:19 Dataset:1160 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:1159 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:1158 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:1161 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:1162 Name:"New Dataset2" (owner=training_user)
01:11:19 Dataset:553 Name:"Orphaned dataset 1" (owner=training_user)
01:11:19 Dataset:554 Name:"Orphaned dataset 2" (owner=training_user)
01:11:19 Dataset:555 Name:"Dataset 0" (owner=training_user-2)
01:11:19 Dataset:1163 Name:"FileAnnotationDelete" (owner=training_user)
01:11:19 Dataset:1164 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:1165 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:1166 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:560 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:559 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:558 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:561 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:562 Name:"New Dataset2" (owner=training_user)
01:11:19 Dataset:563 Name:"FileAnnotationDelete" (owner=training_user)
01:11:19 Dataset:564 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:565 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:566 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:603 Name:"Orphaned dataset 1" (owner=training_user)
01:11:19 Dataset:604 Name:"Orphaned dataset 2" (owner=training_user)
01:11:19 Dataset:605 Name:"Dataset 0" (owner=training_user-2)
01:11:19 Dataset:610 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:609 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:608 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:611 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:612 Name:"New Dataset2" (owner=training_user)
01:11:19 Dataset:613 Name:"FileAnnotationDelete" (owner=training_user)
01:11:19 Dataset:614 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:615 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:616 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:1264 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:1265 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:1266 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:653 Name:"Orphaned dataset 1" (owner=training_user)
01:11:19 Dataset:654 Name:"Orphaned dataset 2" (owner=training_user)
01:11:19 Dataset:655 Name:"Dataset 0" (owner=training_user-2)
01:11:19 Dataset:660 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:659 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:658 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:661 Name:"New Dataset" (owner=training_user)
01:11:19 Dataset:662 Name:"New Dataset2" (owner=training_user)
01:11:19 Dataset:663 Name:"FileAnnotationDelete" (owner=training_user)
01:11:19 Dataset:664 Name:"MyDataset" (owner=training_user)
01:11:19 Dataset:665 Name:"MyDataset" (owner=training_user)
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01:11:20 Dataset:4366 Name:"MyDataset" (owner=training_user)
01:11:20
01:11:20 Images in Dataset: 4452
01:11:20 ==================================================
01:11:20 Image:7252 Name:"test.fake" (owner=training_user)
01:11:20
01:11:20 Image:7253
01:11:20 ==================================================
01:11:20 test&sizeT=10&sizeZ=5&sizeC=3.fake
01:11:20 X: 512
01:11:20 Y: 512
01:11:20 Z: 5
01:11:20 C: 3
01:11:20 T: 10
01:11:20 Channel: 0 Color: (255, 0, 0)
01:11:20 Lookup table: None
01:11:20 Is reverse intensity? False
01:11:20 Channel: 1 Color: (0, 255, 0)
01:11:20 Lookup table: None
01:11:20 Is reverse intensity? False
01:11:20 Channel: 2 Color: (0, 0, 255)
01:11:20 Lookup table: None
01:11:20 Is reverse intensity? False
01:11:20 Pixel Size X: None
01:11:20
01:11:20 List Screens:
01:11:20 ==================================================
01:11:20 Screen:1 Name:"Screen" (owner=training_user)
01:11:20 Plate:1 Name:"Plate" (owner=training_user)
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01:11:20 Plate:51 Name:"Plate" (owner=training_user)
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01:11:20 Plate:151 Name:"Plate" (owner=training_user)
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01:11:20 Plate:351 Name:"Plate" (owner=training_user)
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01:11:21 Plate:852 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:752 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:801 Name:"Screen" (owner=training_user)
01:11:21 Plate:901 Name:"Plate" (owner=training_user)
01:11:21 Plate:902 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:802 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:851 Name:"Screen" (owner=training_user)
01:11:21 Plate:951 Name:"Plate" (owner=training_user)
01:11:21 Plate:952 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:852 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:901 Name:"Screen" (owner=training_user)
01:11:21 Plate:1001 Name:"Plate" (owner=training_user)
01:11:21 Plate:1002 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:902 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:951 Name:"Screen" (owner=training_user)
01:11:21 Plate:1051 Name:"Plate" (owner=training_user)
01:11:21 Plate:1052 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:952 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1001 Name:"Screen" (owner=training_user)
01:11:21 Plate:1101 Name:"Plate" (owner=training_user)
01:11:21 Plate:1102 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1002 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1051 Name:"Screen" (owner=training_user)
01:11:21 Plate:1151 Name:"Plate" (owner=training_user)
01:11:21 Plate:1152 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1052 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1101 Name:"Screen" (owner=training_user)
01:11:21 Plate:1201 Name:"Plate" (owner=training_user)
01:11:21 Plate:1202 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1102 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1151 Name:"Screen" (owner=training_user)
01:11:21 Plate:1251 Name:"Plate" (owner=training_user)
01:11:21 Plate:1252 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1152 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1201 Name:"Screen" (owner=training_user)
01:11:21 Plate:1301 Name:"Plate" (owner=training_user)
01:11:21 Plate:1302 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1202 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1251 Name:"Screen" (owner=training_user)
01:11:21 Plate:1351 Name:"Plate" (owner=training_user)
01:11:21 Plate:1352 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1252 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1301 Name:"Screen" (owner=training_user)
01:11:21 Plate:1401 Name:"Plate" (owner=training_user)
01:11:21 Plate:1402 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1302 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1351 Name:"Screen" (owner=training_user)
01:11:21 Plate:1451 Name:"Plate" (owner=training_user)
01:11:21 Plate:1452 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1352 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1401 Name:"Screen" (owner=training_user)
01:11:21 Plate:1501 Name:"Plate" (owner=training_user)
01:11:21 Plate:1502 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1402 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1451 Name:"Screen" (owner=training_user)
01:11:21 Plate:1551 Name:"Plate" (owner=training_user)
01:11:21 Plate:1552 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1452 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1501 Name:"Screen" (owner=training_user)
01:11:21 Plate:1601 Name:"Plate" (owner=training_user)
01:11:21 Plate:1602 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1502 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1551 Name:"Screen" (owner=training_user)
01:11:21 Plate:1651 Name:"Plate" (owner=training_user)
01:11:21 Plate:1652 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1552 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1601 Name:"Screen" (owner=training_user)
01:11:21 Plate:1701 Name:"Plate" (owner=training_user)
01:11:21 Plate:1702 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1602 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1651 Name:"Screen" (owner=training_user)
01:11:21 Plate:1751 Name:"Plate" (owner=training_user)
01:11:21 Plate:1752 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1652 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1701 Name:"Screen" (owner=training_user)
01:11:21 Plate:1801 Name:"Plate" (owner=training_user)
01:11:21 Plate:1802 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1702 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1751 Name:"Screen" (owner=training_user)
01:11:21 Plate:1851 Name:"Plate" (owner=training_user)
01:11:21 Plate:1852 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1752 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1801 Name:"Screen" (owner=training_user)
01:11:21 Plate:1901 Name:"Plate" (owner=training_user)
01:11:21 Plate:1902 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1802 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1851 Name:"Screen" (owner=training_user)
01:11:21 Plate:1951 Name:"Plate" (owner=training_user)
01:11:21 Plate:1952 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1852 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1901 Name:"Screen" (owner=training_user)
01:11:21 Plate:2001 Name:"Plate" (owner=training_user)
01:11:21 Plate:2002 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1902 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:1951 Name:"Screen" (owner=training_user)
01:11:21 Plate:2051 Name:"Plate" (owner=training_user)
01:11:21 Plate:2052 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:1952 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:2001 Name:"Screen" (owner=training_user)
01:11:21 Plate:2101 Name:"Plate" (owner=training_user)
01:11:21 Plate:2102 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:2002 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:2051 Name:"Screen" (owner=training_user)
01:11:21 Plate:2151 Name:"Plate" (owner=training_user)
01:11:21 Plate:2152 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:2052 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:2101 Name:"Screen" (owner=training_user)
01:11:21 Plate:2201 Name:"Plate" (owner=training_user)
01:11:21 Plate:2202 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:2102 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:2151 Name:"Screen" (owner=training_user)
01:11:21 Plate:2251 Name:"Plate" (owner=training_user)
01:11:21 Plate:2252 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:2152 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:2201 Name:"Screen" (owner=training_user)
01:11:21 Plate:2301 Name:"Plate" (owner=training_user)
01:11:21 Plate:2302 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:2202 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:2251 Name:"Screen" (owner=training_user)
01:11:21 Plate:2351 Name:"Plate" (owner=training_user)
01:11:21 Plate:2352 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:2252 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:2301 Name:"Screen" (owner=training_user)
01:11:21 Plate:2401 Name:"Plate" (owner=training_user)
01:11:21 Plate:2402 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:2302 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:2351 Name:"Screen" (owner=training_user)
01:11:21 Plate:2451 Name:"Plate" (owner=training_user)
01:11:21 Plate:2452 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:2352 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:2401 Name:"Screen" (owner=training_user)
01:11:21 Plate:2501 Name:"Plate" (owner=training_user)
01:11:21 Plate:2502 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:2402 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:2451 Name:"Screen" (owner=training_user)
01:11:21 Plate:2551 Name:"Plate" (owner=training_user)
01:11:21 Plate:2552 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:2452 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:2501 Name:"Screen" (owner=training_user)
01:11:21 Plate:2601 Name:"Plate" (owner=training_user)
01:11:21 Plate:2602 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:2502 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:2551 Name:"Screen" (owner=training_user)
01:11:21 Plate:2651 Name:"Plate" (owner=training_user)
01:11:21 Plate:2652 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:2552 Name:"Screen" (owner=training_user-2)
01:11:21 Screen:2601 Name:"Screen" (owner=training_user)
01:11:21 Plate:2701 Name:"Plate" (owner=training_user)
01:11:21 Plate:2702 Name:"Plate Name 0" (owner=training_user)
01:11:21 Screen:2602 Name:"Screen" (owner=training_user-2)
01:11:24 <string>:150: DeprecationWarning: tostring() is deprecated. Use tobytes() instead.
01:11:24 Screen:2651 Name:"Screen" (owner=training_user)
01:11:24 Plate:2751 Name:"Plate" (owner=training_user)
01:11:24 Plate:2752 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:2652 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:2701 Name:"Screen" (owner=training_user)
01:11:24 Plate:2801 Name:"Plate" (owner=training_user)
01:11:24 Plate:2802 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:2702 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:2751 Name:"Screen" (owner=training_user)
01:11:24 Plate:2851 Name:"Plate" (owner=training_user)
01:11:24 Plate:2852 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:2752 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:2801 Name:"Screen" (owner=training_user)
01:11:24 Plate:2901 Name:"Plate" (owner=training_user)
01:11:24 Plate:2902 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:2802 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:2851 Name:"Screen" (owner=training_user)
01:11:24 Plate:2951 Name:"Plate" (owner=training_user)
01:11:24 Plate:2952 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:2852 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:2901 Name:"Screen" (owner=training_user)
01:11:24 Plate:3001 Name:"Plate" (owner=training_user)
01:11:24 Plate:3002 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:2902 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:2951 Name:"Screen" (owner=training_user)
01:11:24 Plate:3051 Name:"Plate" (owner=training_user)
01:11:24 Plate:3052 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:2952 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3001 Name:"Screen" (owner=training_user)
01:11:24 Plate:3101 Name:"Plate" (owner=training_user)
01:11:24 Plate:3102 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3002 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3051 Name:"Screen" (owner=training_user)
01:11:24 Plate:3151 Name:"Plate" (owner=training_user)
01:11:24 Plate:3152 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3052 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3101 Name:"Screen" (owner=training_user)
01:11:24 Plate:3201 Name:"Plate" (owner=training_user)
01:11:24 Plate:3202 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3102 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3151 Name:"Screen" (owner=training_user)
01:11:24 Plate:3251 Name:"Plate" (owner=training_user)
01:11:24 Plate:3252 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3152 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3201 Name:"Screen" (owner=training_user)
01:11:24 Plate:3301 Name:"Plate" (owner=training_user)
01:11:24 Plate:3302 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3202 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3251 Name:"Screen" (owner=training_user)
01:11:24 Plate:3351 Name:"Plate" (owner=training_user)
01:11:24 Plate:3352 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3252 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3301 Name:"Screen" (owner=training_user)
01:11:24 Plate:3401 Name:"Plate" (owner=training_user)
01:11:24 Plate:3402 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3302 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3351 Name:"Screen" (owner=training_user)
01:11:24 Plate:3451 Name:"Plate" (owner=training_user)
01:11:24 Plate:3452 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3352 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3401 Name:"Screen" (owner=training_user)
01:11:24 Plate:3501 Name:"Plate" (owner=training_user)
01:11:24 Plate:3502 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3402 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3451 Name:"Screen" (owner=training_user)
01:11:24 Plate:3551 Name:"Plate" (owner=training_user)
01:11:24 Plate:3552 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3452 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3501 Name:"Screen" (owner=training_user)
01:11:24 Plate:3601 Name:"Plate" (owner=training_user)
01:11:24 Plate:3602 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3502 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3551 Name:"Screen" (owner=training_user)
01:11:24 Plate:3651 Name:"Plate" (owner=training_user)
01:11:24 Plate:3652 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3552 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3601 Name:"Screen" (owner=training_user)
01:11:24 Plate:3701 Name:"Plate" (owner=training_user)
01:11:24 Plate:3702 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3602 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3651 Name:"Screen" (owner=training_user)
01:11:24 Plate:3751 Name:"Plate" (owner=training_user)
01:11:24 Plate:3752 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3652 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3701 Name:"Screen" (owner=training_user)
01:11:24 Plate:3801 Name:"Plate" (owner=training_user)
01:11:24 Plate:3802 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3702 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3751 Name:"Screen" (owner=training_user)
01:11:24 Plate:3851 Name:"Plate" (owner=training_user)
01:11:24 Plate:3852 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3752 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3801 Name:"Screen" (owner=training_user)
01:11:24 Plate:3901 Name:"Plate" (owner=training_user)
01:11:24 Plate:3902 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3802 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3851 Name:"Screen" (owner=training_user)
01:11:24 Plate:3951 Name:"Plate" (owner=training_user)
01:11:24 Plate:3952 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3852 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3901 Name:"Screen" (owner=training_user)
01:11:24 Plate:4001 Name:"Plate" (owner=training_user)
01:11:24 Plate:4002 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3902 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:3951 Name:"Screen" (owner=training_user)
01:11:24 Plate:4051 Name:"Plate" (owner=training_user)
01:11:24 Plate:4052 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:3952 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:4001 Name:"Screen" (owner=training_user)
01:11:24 Plate:4101 Name:"Plate" (owner=training_user)
01:11:24 Plate:4102 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:4002 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:4051 Name:"Screen" (owner=training_user)
01:11:24 Plate:4151 Name:"Plate" (owner=training_user)
01:11:24 Plate:4152 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:4052 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:4101 Name:"Screen" (owner=training_user)
01:11:24 Plate:4201 Name:"Plate" (owner=training_user)
01:11:24 Plate:4202 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:4102 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:4151 Name:"Screen" (owner=training_user)
01:11:24 Plate:4251 Name:"Plate" (owner=training_user)
01:11:24 Plate:4252 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:4152 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:4201 Name:"Screen" (owner=training_user)
01:11:24 Plate:4301 Name:"Plate" (owner=training_user)
01:11:24 Plate:4302 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:4202 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:4251 Name:"Screen" (owner=training_user)
01:11:24 Plate:4351 Name:"Plate" (owner=training_user)
01:11:24 Plate:4352 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:4252 Name:"Screen" (owner=training_user-2)
01:11:24 Screen:4301 Name:"Screen" (owner=training_user)
01:11:24 Plate:4401 Name:"Plate" (owner=training_user)
01:11:24 Plate:4402 Name:"Plate Name 0" (owner=training_user)
01:11:24 Screen:4302 Name:"Screen" (owner=training_user-2)
01:11:24
01:11:24 Plate:4402
01:11:24 ==================================================
01:11:24
01:11:24 Number of fields: (0, 0)
01:11:24
01:11:24 Grid size: {'rows': 1, 'columns': 3}
01:11:24
01:11:24 Wells in Plate: Plate Name 0
01:11:24 Well: 0 1 Fields: 1
01:11:24 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 2] 7255
01:11:24 Well: 0 2 Fields: 1
01:11:24 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW 3] 7256
01:11:24 Well: 0 0 Fields: 1
01:11:24 Image: SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake [SPW] 7254
01:11:24 6051 <class 'omero.model.MapAnnotationI'>
01:11:24 added by training_user
01:11:24 Image ID: 7253
01:11:24 Annotation ID: 6051
01:11:24 7253
01:11:24 Channel rendering settings:
01:11:24 Name: 0
01:11:24 Color: FF0000
01:11:24 Active: True
01:11:24 Levels: 0.0 - 255.0
01:11:24 Name: 1
01:11:24 Color: 00FF00
01:11:24 Active: True
01:11:24 Levels: 0.0 - 255.0
01:11:24 Name: 2
01:11:24 Color: 0000FF
01:11:24 Active: True
01:11:24 Levels: 0.0 - 255.0
01:11:24 isGreyscaleRenderingModel: False
01:11:24 Default Z/T positions:
01:11:24 Z = 2, T = 0
01:11:24 Rendering Defs on Image:
01:11:24 ID: 7153 (owner: training_user training_user)
01:11:24 Adding a rectangle at theZ: 2, theT: 0, X: 50, Y: 200, width: 100, height: 50
01:11:24 ROI: ID: 4352
01:11:24 Shape: id 4471 theT 0 theZ 2 textValue test-Rectangle type Rectangle x 50.0 y 200.0 width 100.0 height 50.0
01:11:24 Shape: id 4472 theT 0 Traceback (most recent call last):
01:11:30 File "/usr/lib64/python3.9/runpy.py", line 197, in _run_module_as_main
01:11:30 return _run_code(code, main_globals, None,
01:11:30 File "/usr/lib64/python3.9/runpy.py", line 87, in _run_code
01:11:30 exec(code, run_globals)
01:11:30 File "/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/__main__.py", line 26, in <module>
01:11:30 exec(open(os.path.join(training_dir, 'Tables.py')).read())
01:11:30 File "<string>", line 48, in <module>
01:11:30 File "/home/omero/workspace/OMERO-training/.venv3/lib64/python3.9/site-packages/omero_SharedResources_ice.py", line 393, in newTable
01:11:30 return _M_omero.grid.SharedResources._op_newTable.invoke(self, ((repoId, path), _ctx))
01:11:30 omero.InternalException: exception ::omero::InternalException
01:11:30 {
01:11:30 serverStackTrace =
01:11:30 serverExceptionClass =
01:11:30 message = null table as argument
01:11:30 }
01:11:30 theZ 2 textValue test-Ellipse type Ellipse x 200.0 y 50.0 radiusX 100.0 radiusY 50.0
01:11:30 ROI: ID: 4353
01:11:30 Shape: id 4473 theT 0 theZ 2 textValue test-Line type Line x1 50.0 x2 150.0 y1 200.0 y2 250.0
01:11:30 ROI: ID: 4354
01:11:30 Shape: id 4474 theT 0 theZ 0 textValue test-Mask type Mask x 50.0 y 50.0 width 100.0 height 100.0
01:11:30 ROI: ID: 4355
01:11:30 Shape: id 4475 theT 0 theZ 2 textValue test-Point type Point x 50.0 y 200.0
01:11:30 ROI: ID: 4356
01:11:30 <class 'omero.model.PolygonI'> Not supported by this code
01:11:30 Shape: id 4476 theT 0 theZ 2 textValue test-Polygon
01:11:30 Points 10000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.867513459481287
01:11:30 Points 1 Min 50.0 Mean 50.0 Max 50.0 Sum 50.0 StdDev 0.0
01:11:30 Points 5000 Min 50.0 Mean 99.5 Max 149.0 Sum 149.0 StdDev 28.86895708779012
01:11:30 Points 15695 Min 0.0 Mean 157.55208665179993 Max 255.0 Sum 255.0 StdDev 72.87073453134771
01:11:30 Points 25145 Min 10.0 Mean 130.03957049115132 Max 249.0 Sum 249.0 StdDev 57.70727405876767
01:11:30 Points 101 Min 50.0 Mean 100.0 Max 150.0 Sum 150.0 StdDev 29.300170647967224
01:11:30 Removing Shape from ROI...
01:11:30 Deleting ROI: 4357
01:11:30 !! 06/17/24 01:11:30.620 error: 2 communicators not destroyed during global destruction.Build step 'Execute shell' marked build as failure
01:11:30 Finished: FAILURE
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