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#14 387.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.13.0/maven-scm-provider-gitexe-1.13.0.jar (72 kB at 2.3 MB/s)
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#14 388.0 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-container-default/1.5.4/plexus-container-default-1.5.4.pom
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#14 388.0 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.2.2/plexus-classworlds-2.2.2.pom
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#14 388.0 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus/2.0.3/plexus-2.0.3.pom
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#14 388.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/xbean/xbean-reflect/3.4/xbean-reflect-3.4.pom
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#14 388.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/xbean/xbean/3.4/xbean-3.4.pom
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#14 388.2 Downloading from central: https://repo.maven.apache.org/maven2/commons-logging/commons-logging-api/1.1/commons-logging-api-1.1.pom
#14 388.2 Progress (1): 4.1/5.3 kB
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#14 388.2 Downloading from central: https://repo.maven.apache.org/maven2/com/google/collections/google-collections/1.0/google-collections-1.0.pom
#14 388.2 Progress (1): 2.5 kB
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#14 388.2 Downloading from central: https://repo.maven.apache.org/maven2/com/google/google/1/google-1.pom
#14 388.2 Progress (1): 1.6 kB
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#14 388.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.3/maven-scm-provider-gitexe-1.3.pom
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#14 388.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers-git/1.3/maven-scm-providers-git-1.3.pom
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#14 388.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers/1.3/maven-scm-providers-1.3.pom
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#14 388.3 Downloading from central: https://repo.maven.apache.org/maven2/regexp/regexp/1.3/regexp-1.3.pom
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#14 388.4 Downloading from central: https://repo.maven.apache.org/maven2/org/kathrynhuxtable/maven/wagon/wagon-gitsite/0.3.1/wagon-gitsite-0.3.1.jar
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#14 388.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-manager-plexus/1.3/maven-scm-manager-plexus-1.3.jar
#14 388.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-api/1.3/maven-scm-api-1.3.jar
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#14 388.4 Downloading from central: https://repo.maven.apache.org/maven2/regexp/regexp/1.3/regexp-1.3.jar
#14 388.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-manager-plexus/1.3/maven-scm-manager-plexus-1.3.jar (10 kB at 403 kB/s)
#14 388.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-git-commons/1.3/maven-scm-provider-git-commons-1.3.jar
#14 388.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.3/maven-scm-provider-gitexe-1.3.jar (49 kB at 1.8 MB/s)
#14 388.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-api/1.3/maven-scm-api-1.3.jar (89 kB at 2.7 MB/s)
#14 388.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/1.5.8/plexus-utils-1.5.8.jar (268 kB at 7.4 MB/s)
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#14 388.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-git-commons/1.3/maven-scm-provider-git-commons-1.3.jar (37 kB at 719 kB/s)
#14 388.5 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.8/nexus-staging-maven-plugin-1.6.8.pom
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#14 391.0 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-bouncycastle/2.14.3-02/nexus-buildsupport-bouncycastle-2.14.3-02.pom
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#14 393.6 Downloading from central: https://repo.maven.apache.org/maven2/com/thoughtworks/xstream/xstream-parent/1.4.7/xstream-parent-1.4.7.pom
#14 393.6 Progress (1): 4.1/26 kB
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#14 393.6 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/codehaus-parent/3/codehaus-parent-3.pom
#14 393.6 Progress (1): 4.1/4.1 kB
Progress (1): 4.1 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/codehaus-parent/3/codehaus-parent-3.pom (4.1 kB at 164 kB/s)
#14 393.6 Downloading from central: https://repo.maven.apache.org/maven2/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.pom
#14 393.6 Progress (1): 386 B
Downloaded from central: https://repo.maven.apache.org/maven2/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.pom (386 B at 15 kB/s)
#14 393.6 Downloading from central: https://repo.maven.apache.org/maven2/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.pom
#14 393.7 Progress (1): 1.6 kB
Downloaded from central: https://repo.maven.apache.org/maven2/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.pom (1.6 kB at 67 kB/s)
#14 393.7 Downloading from central: https://repo.maven.apache.org/maven2/joda-time/joda-time/2.2/joda-time-2.2.pom
#14 393.7 Progress (1): 4.1/16 kB
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#14 393.7 D
#14 393.7 [output clipped, log limit 2MiB reached]
#14 494.1 SLF4J: No SLF4J providers were found.
#14 494.1 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 494.1 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 503.2s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.572 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.034 [echo] isSnapshot = true
#16 1.150
#16 1.150 copy-jars:
#16 1.150
#16 1.150 deps-formats-api:
#16 1.238 [echo] isSnapshot = true
#16 1.297
#16 1.297 install-pom:
#16 1.510 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 1.516 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 1.521 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.523
#16 1.523 jar-formats-api:
#16 1.637 [echo] isSnapshot = true
#16 1.836
#16 1.836 init-title:
#16 1.837 [echo] ----------=========== formats-api ===========----------
#16 1.837
#16 1.837 init-timestamp:
#16 1.841
#16 1.841 init:
#16 1.841
#16 1.841 copy-resources:
#16 1.842 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.857 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.860
#16 1.860 compile:
#16 2.041 [resolver:resolve] Resolving artifacts
#16 2.068 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.838 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.838 [javac] import loci.common.ReflectedUniverse;
#16 2.838 [javac] ^
#16 3.038 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.039 [javac] int currentIndex = r.getCoreIndex();
#16 3.039 [javac] ^
#16 3.039 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.039 [javac] r.setCoreIndex(coreIndex);
#16 3.039 [javac] ^
#16 3.039 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.039 [javac] r.setCoreIndex(currentIndex);
#16 3.039 [javac] ^
#16 3.140 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.140 [javac] public void setCoreIndex(int no) {
#16 3.140 [javac] ^
#16 3.140 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.140 [javac] public int getCoreIndex() {
#16 3.140 [javac] ^
#16 3.140 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.140 [javac] public int coreIndexToSeries(int index)
#16 3.140 [javac] ^
#16 3.140 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.140 [javac] public int seriesToCoreIndex(int series)
#16 3.140 [javac] ^
#16 3.140 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.140 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.141 [javac] ^
#16 3.241 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.241 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 3.241 [javac] ^
#16 3.241 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.241 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 3.241 [javac] ^
#16 3.241 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.241 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 3.241 [javac] ^
#16 3.241 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.241 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 3.241 [javac] ^
#16 3.342 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.342 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.342 [javac] ^
#16 3.342 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.342 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.342 [javac] ^
#16 3.342 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.342 [javac] public void setCoreIndex(int no) {
#16 3.342 [javac] ^
#16 3.342 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.342 [javac] public int getCoreIndex() {
#16 3.342 [javac] ^
#16 3.342 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.342 [javac] public int coreIndexToSeries(int index) {
#16 3.342 [javac] ^
#16 3.343 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.343 [javac] public int seriesToCoreIndex(int series) {
#16 3.343 [javac] ^
#16 3.343 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.343 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.343 [javac] ^
#16 3.343 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.343 [javac] return getReader().getCoreMetadataList();
#16 3.343 [javac] ^
#16 3.444 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.444 [javac] return getReader().getCoreIndex();
#16 3.444 [javac] ^
#16 3.444 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.444 [javac] getReader().setCoreIndex(no);
#16 3.444 [javac] ^
#16 3.444 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.444 [javac] return getReader().seriesToCoreIndex(series);
#16 3.444 [javac] ^
#16 3.444 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.444 [javac] return getReader().coreIndexToSeries(index);
#16 3.444 [javac] ^
#16 3.444 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.444 [javac] public void setCoreIndex(int no) {
#16 3.444 [javac] ^
#16 3.444 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.444 [javac] public int getCoreIndex() {
#16 3.444 [javac] ^
#16 3.444 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.444 [javac] public int coreIndexToSeries(int index) {
#16 3.444 [javac] ^
#16 3.444 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.445 [javac] public int seriesToCoreIndex(int series) {
#16 3.445 [javac] ^
#16 3.445 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.445 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.445 [javac] ^
#16 3.445 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.445 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.445 [javac] ^
#16 3.445 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.445 [javac] return reader.getCoreIndex();
#16 3.445 [javac] ^
#16 3.445 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.445 [javac] reader.setCoreIndex(no);
#16 3.445 [javac] ^
#16 3.445 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.445 [javac] return reader.seriesToCoreIndex(series);
#16 3.445 [javac] ^
#16 3.445 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.445 [javac] return reader.coreIndexToSeries(index);
#16 3.445 [javac] ^
#16 3.646 [javac] Note: Some input files use unchecked or unsafe operations.
#16 3.646 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 3.646 [javac] 35 warnings
#16 3.656
#16 3.656 formats-api.jar:
#16 3.656 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.681 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 3.713 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 3.717 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 3.720 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 3.721 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 3.723 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 3.724
#16 3.724 deps-turbojpeg:
#16 3.724
#16 3.724 jar-turbojpeg:
#16 3.834 [echo] isSnapshot = true
#16 4.013
#16 4.013 init-title:
#16 4.014 [echo] ----------=========== turbojpeg ===========----------
#16 4.014
#16 4.014 init-timestamp:
#16 4.014
#16 4.014 init:
#16 4.014
#16 4.014 copy-resources:
#16 4.014 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.015
#16 4.015 compile:
#16 4.027 [resolver:resolve] Resolving artifacts
#16 4.030 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.782
#16 4.782 jar:
#16 4.788 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 5.059 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 5.068 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 5.071 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 5.073 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 5.077 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 5.078
#16 5.078 deps-formats-bsd:
#16 5.078
#16 5.078 jar-formats-bsd:
#16 5.183 [echo] isSnapshot = true
#16 5.366
#16 5.366 init-title:
#16 5.366 [echo] ----------=========== formats-bsd ===========----------
#16 5.366
#16 5.366 init-timestamp:
#16 5.367
#16 5.367 init:
#16 5.367
#16 5.367 copy-resources:
#16 5.367 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.370 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.371
#16 5.371 compile:
#16 5.585 [resolver:resolve] Resolving artifacts
#16 5.618 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.828 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.828 [javac] import loci.common.ReflectedUniverse;
#16 6.828 [javac] ^
#16 7.128 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.128 [javac] core.size() != reader.getCoreMetadataList().size())
#16 7.128 [javac] ^
#16 7.128 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.128 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 7.128 [javac] ^
#16 7.128 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.128 [javac] int n = reader.getCoreMetadataList().size();
#16 7.128 [javac] ^
#16 7.128 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.128 [javac] reader.setCoreIndex(coreIndex);
#16 7.128 [javac] ^
#16 7.129 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.129 [javac] int n = reader.getCoreMetadataList().size();
#16 7.129 [javac] ^
#16 7.129 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.129 [javac] int n = reader.getCoreMetadataList().size();
#16 7.129 [javac] ^
#16 7.129 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 7.129 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 7.129 [javac] ^
#16 7.129 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.129 [javac] int n = reader.getCoreMetadataList().size();
#16 7.129 [javac] ^
#16 7.129 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 7.129 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 7.129 [javac] ^
#16 7.129 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.129 [javac] int n = reader.getCoreMetadataList().size();
#16 7.129 [javac] ^
#16 7.129 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.129 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 7.129 [javac] ^
#16 7.129 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.129 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.129 [javac] ^
#16 7.129 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.129 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.129 [javac] ^
#16 7.230 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.230 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 7.230 [javac] ^
#16 7.230 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.230 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 7.230 [javac] ^
#16 7.230 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.230 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 7.230 [javac] ^
#16 7.230 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.230 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 7.230 [javac] ^
#16 7.230 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.230 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 7.230 [javac] ^
#16 7.230 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.230 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 7.230 [javac] ^
#16 7.330 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.330 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 7.330 [javac] ^
#16 7.431 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.431 [javac] BitWriter out = new BitWriter();
#16 7.431 [javac] ^
#16 7.431 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.431 [javac] BitWriter out = new BitWriter();
#16 7.431 [javac] ^
#16 8.332 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.332 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 8.332 [javac] ^
#16 8.332 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 8.332 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 8.332 [javac] ^
#16 8.432 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.432 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 8.432 [javac] ^
#16 8.432 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.432 [javac] protected ReflectedUniverse r;
#16 8.432 [javac] ^
#16 8.432 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.432 [javac] r = new ReflectedUniverse();
#16 8.432 [javac] ^
#16 8.533 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 8.533 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 8.533 [javac] ^
#16 8.533 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 8.533 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 8.533 [javac] ^
#16 8.533 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 8.533 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 8.533 [javac] ^
#16 8.533 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 8.533 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 8.533 [javac] ^
#16 8.533 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 8.533 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 8.533 [javac] ^
#16 8.533 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 8.533 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 8.533 [javac] ^
#16 8.533 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 8.533 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 8.533 [javac] ^
#16 8.533 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 8.533 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 8.533 [javac] ^
#16 8.533 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 8.534 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 8.534 [javac] ^
#16 8.634 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 8.634 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 8.634 [javac] ^
#16 8.634 [javac] Note: Some input files use unchecked or unsafe operations.
#16 8.634 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 8.634 [javac] 38 warnings
#16 8.700
#16 8.700 formats-bsd.jar:
#16 8.708 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 8.823 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 8.827 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 8.931 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 8.933 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 8.936 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 8.936
#16 8.936 deps-formats-gpl:
#16 8.936
#16 8.936 jar-formats-gpl:
#16 9.036 [echo] isSnapshot = true
#16 9.214
#16 9.214 init-title:
#16 9.214 [echo] ----------=========== formats-gpl ===========----------
#16 9.214
#16 9.214 init-timestamp:
#16 9.214
#16 9.214 init:
#16 9.215
#16 9.215 copy-resources:
#16 9.215 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.216 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.291
#16 9.291 compile:
#16 9.749 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.01 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.04 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.05 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.06 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.07 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.08 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 10.10 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 10.10 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.14 [resolver:resolve] Resolving artifacts
#16 10.15 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 10.15 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 10.20 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 10.20 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 10.21 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 10.21 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 10.22 [javac] Compiling 175 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.53 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 11.53 [javac] import loci.formats.codec.BitWriter;
#16 11.53 [javac] ^
#16 11.73 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 11.73 [javac] import loci.formats.codec.BitWriter;
#16 11.73 [javac] ^
#16 13.34 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 13.34 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 13.34 [javac] ^
#16 13.34 [javac] cast to Object for a varargs call
#16 13.34 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 13.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.44 [javac] BitWriter bits = null;
#16 13.44 [javac] ^
#16 13.44 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.44 [javac] bits = new BitWriter(planes[index].length / 8);
#16 13.44 [javac] ^
#16 13.64 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 13.64 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 13.64 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.04 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 14.04 [javac] ^
#16 14.04 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.04 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 14.04 [javac] ^
#16 14.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 14.24 [javac] Variable variable = group.findVariable(variableName);
#16 14.24 [javac] ^
#16 14.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 14.24 [javac] Variable variable = group.findVariable(variableName);
#16 14.24 [javac] ^
#16 14.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 14.24 [javac] List<Attribute> attributes = variable.getAttributes();
#16 14.24 [javac] ^
#16 14.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.24 [javac] String groupName = group.getName();
#16 14.24 [javac] ^
#16 14.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 14.24 [javac] List<Attribute> attributes = group.getAttributes();
#16 14.24 [javac] ^
#16 14.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.24 [javac] String variableName = variable.getName();
#16 14.24 [javac] ^
#16 14.24 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 14.24 [javac] Group nextParent = parent.findGroup(token);
#16 14.24 [javac] ^
#16 14.24 [javac] Note: Some input files use unchecked or unsafe operations.
#16 14.24 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 14.24 [javac] 15 warnings
#16 14.25
#16 14.25 formats-gpl.jar:
#16 14.26 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 14.41 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 14.41 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 14.41 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 14.42 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 14.42 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 14.42
#16 14.42 deps-bio-formats-plugins:
#16 14.42
#16 14.42 jar-bio-formats-plugins:
#16 14.52 [echo] isSnapshot = true
#16 14.70
#16 14.70 init-title:
#16 14.70 [echo] ----------=========== bio-formats_plugins ===========----------
#16 14.70
#16 14.70 init-timestamp:
#16 14.70
#16 14.70 init:
#16 14.70
#16 14.70 copy-resources:
#16 14.70 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 14.70 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 14.70
#16 14.70 compile:
#16 14.98 [resolver:resolve] Resolving artifacts
#16 14.99 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.90 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 15.90 [javac] import loci.common.ReflectedUniverse;
#16 15.90 [javac] ^
#16 15.90 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 15.90 [javac] import loci.common.ReflectedUniverse;
#16 15.90 [javac] ^
#16 16.20 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 16.20 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 16.20 [javac] ^
#16 16.40 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.40 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 16.40 [javac] ^
#16 16.40 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.40 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 16.40 [javac] ^
#16 16.50 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.50 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 16.50 [javac] ^
#16 16.50 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.50 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 16.50 [javac] ^
#16 16.70 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 16.70 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.75 [javac] 7 warnings
#16 16.75
#16 16.75 bio-formats-plugins.jar:
#16 16.76 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 16.79 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 16.79 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 16.79 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 16.79 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 16.80 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 16.80
#16 16.80 deps-bio-formats-tools:
#16 16.80
#16 16.80 jar-bio-formats-tools:
#16 16.89 [echo] isSnapshot = true
#16 17.07
#16 17.07 init-title:
#16 17.07 [echo] ----------=========== bio-formats-tools ===========----------
#16 17.07
#16 17.07 init-timestamp:
#16 17.07
#16 17.07 init:
#16 17.07
#16 17.07 copy-resources:
#16 17.07 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 17.07
#16 17.07 compile:
#16 17.30 [resolver:resolve] Resolving artifacts
#16 17.31 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 18.29
#16 18.29 bio-formats-tools.jar:
#16 18.29 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 18.30 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 18.31 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 18.31 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 18.31 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 18.31 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 18.31
#16 18.31 deps-tests:
#16 18.31
#16 18.31 jar-tests:
#16 18.41 [echo] isSnapshot = true
#16 18.58
#16 18.58 init-title:
#16 18.59 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 18.59
#16 18.59 init-timestamp:
#16 18.59
#16 18.59 init:
#16 18.59
#16 18.59 copy-resources:
#16 18.59 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 18.59
#16 18.59 compile:
#16 18.94 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.03 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.04 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.67 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.10 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 20.13 [resolver:resolve] Resolving artifacts
#16 20.15 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.19 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.20 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.60 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.96 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 21.01 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.83 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 21.83 [javac] int index = unflattenedReader.getCoreIndex();
#16 21.83 [javac] ^
#16 21.83 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 21.83 [javac] reader.setCoreIndex(index);
#16 21.83 [javac] ^
#16 22.13 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2257: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.13 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 22.13 [javac] ^
#16 22.13 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2423: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.13 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 22.13 [javac] ^
#16 22.41 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 22.41 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 22.41 [javac] ^
#16 22.41 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 22.41 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 22.41 [javac] ^
#16 22.41 [javac] Note: Some input files use unchecked or unsafe operations.
#16 22.41 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 22.41 [javac] 6 warnings
#16 22.41
#16 22.41 tests.jar:
#16 22.41 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 22.42 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 22.43 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 22.43 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 22.43 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 22.43 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 22.43
#16 22.43 jars:
#16 22.43
#16 22.43 copy-jars:
#16 22.43
#16 22.43 deps-formats-api:
#16 22.49 [echo] isSnapshot = true
#16 22.53
#16 22.53 install-pom:
#16 22.71 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 22.71 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 22.71 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 22.71
#16 22.71 jar-formats-api:
#16 22.82 [echo] isSnapshot = true
#16 22.99
#16 22.99 init-title:
#16 22.99 [echo] ----------=========== formats-api ===========----------
#16 22.99
#16 22.99 init-timestamp:
#16 22.99
#16 22.99 init:
#16 22.99
#16 22.99 copy-resources:
#16 23.00
#16 23.00 compile:
#16 23.16 [resolver:resolve] Resolving artifacts
#16 23.17
#16 23.17 formats-api.jar:
#16 23.18 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 23.19 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 23.19 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 23.19 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 23.19 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 23.20
#16 23.20 deps-turbojpeg:
#16 23.20
#16 23.20 jar-turbojpeg:
#16 23.45 [echo] isSnapshot = true
#16 23.61
#16 23.61 init-title:
#16 23.61 [echo] ----------=========== turbojpeg ===========----------
#16 23.61
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#16 23.61
#16 23.61 init:
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#16 23.61
#16 23.61 compile:
#16 23.62 [resolver:resolve] Resolving artifacts
#16 23.62
#16 23.62 jar:
#16 23.63 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 23.64 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 23.64 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 23.64 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 23.64 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 23.64
#16 23.64 deps-formats-bsd:
#16 23.64
#16 23.64 jar-formats-bsd:
#16 23.74 [echo] isSnapshot = true
#16 23.91
#16 23.91 init-title:
#16 23.91 [echo] ----------=========== formats-bsd ===========----------
#16 23.91
#16 23.91 init-timestamp:
#16 23.91
#16 23.91 init:
#16 23.91
#16 23.91 copy-resources:
#16 23.91
#16 23.91 compile:
#16 24.10 [resolver:resolve] Resolving artifacts
#16 24.12
#16 24.12 formats-bsd.jar:
#16 24.16 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 24.17 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 24.17 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 24.17 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.17 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 24.17
#16 24.17 deps-formats-gpl:
#16 24.17
#16 24.17 jar-formats-gpl:
#16 24.26 [echo] isSnapshot = true
#16 24.43
#16 24.43 init-title:
#16 24.43 [echo] ----------=========== formats-gpl ===========----------
#16 24.43
#16 24.43 init-timestamp:
#16 24.43
#16 24.43 init:
#16 24.43
#16 24.43 copy-resources:
#16 24.43
#16 24.43 compile:
#16 24.67 [resolver:resolve] Resolving artifacts
#16 24.69
#16 24.69 formats-gpl.jar:
#16 24.73 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 24.73 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 24.73 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 24.73 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.74 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 24.74
#16 24.74 deps-bio-formats-plugins:
#16 24.74
#16 24.74 jar-bio-formats-plugins:
#16 24.83 [echo] isSnapshot = true
#16 25.00
#16 25.00 init-title:
#16 25.00 [echo] ----------=========== bio-formats_plugins ===========----------
#16 25.00
#16 25.00 init-timestamp:
#16 25.00
#16 25.00 init:
#16 25.00
#16 25.00 copy-resources:
#16 25.00
#16 25.00 compile:
#16 25.24 [resolver:resolve] Resolving artifacts
#16 25.26
#16 25.26 bio-formats-plugins.jar:
#16 25.27 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 25.28 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 25.28 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 25.28 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.28 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 25.28
#16 25.28 deps-bio-formats-tools:
#16 25.28
#16 25.28 jar-bio-formats-tools:
#16 25.37 [echo] isSnapshot = true
#16 25.53
#16 25.53 init-title:
#16 25.53 [echo] ----------=========== bio-formats-tools ===========----------
#16 25.53
#16 25.53 init-timestamp:
#16 25.53
#16 25.53 init:
#16 25.53
#16 25.53 copy-resources:
#16 25.54
#16 25.54 compile:
#16 25.78 [resolver:resolve] Resolving artifacts
#16 25.79
#16 25.79 bio-formats-tools.jar:
#16 25.79 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 25.80 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 25.80 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 25.80 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.80 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 25.80
#16 25.80 deps-tests:
#16 25.80
#16 25.80 jar-tests:
#16 25.90 [echo] isSnapshot = true
#16 26.07
#16 26.07 init-title:
#16 26.07 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 26.07
#16 26.07 init-timestamp:
#16 26.07
#16 26.07 init:
#16 26.07
#16 26.07 copy-resources:
#16 26.07
#16 26.07 compile:
#16 26.35 [resolver:resolve] Resolving artifacts
#16 26.37
#16 26.37 tests.jar:
#16 26.39 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 26.39 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 26.39 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 26.40 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.40 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.40
#16 26.40 jars:
#16 26.40
#16 26.40 tools:
#16 26.40 [echo] ----------=========== bioformats_package ===========----------
#16 26.52 [echo] isSnapshot = true
#16 26.71
#16 26.71 init-timestamp:
#16 26.71
#16 26.71 bundle:
#16 27.01 [resolver:resolve] Resolving artifacts
#16 27.03 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.06 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.26-SNAPSHOT/ome-common-6.0.26-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.08 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.11 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.12 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.19 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.21 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.26 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.28 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.56 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.62 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.64 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.70 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.71 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.72 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.73 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.91 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.43 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.43 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.44 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.44 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.53 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.54 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.55 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.0-SNAPSHOT/ome-xml-6.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.61 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.0-SNAPSHOT/specification-6.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.67 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.68 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.1-SNAPSHOT/ome-codecs-1.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.69 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.84 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.92 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.96 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.96 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.06 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.08 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.53 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.55 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.58 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.65 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.76 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.77 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.79 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.80 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.03 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.11 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.16 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.26 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.28 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/metakit-5.8.9-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.28 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.41 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.41 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.89 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.91 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.02 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.08 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.09 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.10 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.16 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.19 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.35 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.36 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.37 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.38 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.39 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.42 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.82 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.93 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.32 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 38.40 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.07 [resolver:install] Using default POM (ome:bioformats_package:8.1.0-SNAPSHOT)
#16 39.08 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.pom
#16 39.08 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.jar
#16 39.11 [resolver:install] Installing ome:bioformats_package:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 39.12 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 39.12
#16 39.12 BUILD SUCCESSFUL
#16 39.12 Total time: 38 seconds
#16 DONE 40.1s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.1s
#18 exporting to image
#18 exporting layers
#18 exporting layers 4.8s done
#18 writing image sha256:9a55e9bbc1d3f737817680b69d51d1ff73e933c621c6b4645bcd5b059f88f605 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 4.8s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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