Console Output
Skipping 194 KB..
Full Lognn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-10-27 00:43:23,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:43:23,443 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-10-27 00:43:23,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-10-27 00:43:24,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-10-27 00:43:25,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-10-27 00:43:25,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:43:26,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-10-27 00:43:26,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:43:26,629 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-10-27 00:43:26,629 [ scc.repo] DEBUG ## Branches found:
2025-10-27 00:43:26,629 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-10-27 00:43:26,629 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:43:26,629 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:26,632 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-27 00:43:26,634 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-27 00:43:26,634 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-27 00:43:26,636 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-27 00:43:26,643 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-10-27 00:43:27,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-10-27 00:43:27,255 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-10-27 00:43:27,565 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-10-27 00:43:27,565 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-10-27 00:43:27,569 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-10-27 00:43:27,852 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-10-27 00:43:27,852 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-10-27 00:43:27,855 [ scc.git] DEBUG ## Unique users: []
2025-10-27 00:43:27,855 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:43:27,855 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:27,858 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-10-27 00:43:27,862 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:27,864 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-10-27 00:43:27,876 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-10-27 00:43:27,876 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-10-27 00:43:27,876 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-10-27 00:43:27,876 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-10-27 00:43:27,876 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-10-27 00:43:27,877 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-10-27 00:43:27,879 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-10-27 00:43:27,883 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-10-27 00:43:28,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:43:28,056 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-10-27 00:43:28,060 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-10-27 00:43:28,062 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#568](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-10-27 00:43:28,064 [ scc.config] DEBUG Found github.token
2025-10-27 00:43:28,064 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-10-27 00:43:28,064 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-10-27 00:43:28,068 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:28,070 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-10-27 00:43:28,083 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-10-27 00:43:28,083 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-10-27 00:43:28,083 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-10-27 00:43:28,083 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-10-27 00:43:28,084 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-10-27 00:43:28,086 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-10-27 00:43:28,090 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-10-27 00:43:28,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:43:28,450 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-10-27 00:43:28,453 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-10-27 00:43:28,456 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#568](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-10-27 00:43:28,458 [ scc.config] DEBUG Found github.token
2025-10-27 00:43:28,458 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-10-27 00:43:28,458 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-27 00:43:28,495 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:43:28,495 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:28,497 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-27 00:43:28,533 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-27 00:43:28,537 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f85edfe2710> has no local changes
2025-10-27 00:43:28,537 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#568 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/)'
2025-10-27 00:43:28,543 [ scc.git] DEBUG [detached HEAD 6d3e7fe] merge master -Dorg -Ssuccess-only
2025-10-27 00:43:28,544 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:43:28,544 [ scc.repo] DEBUG ## PRs found:
2025-10-27 00:43:28,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-10-27 00:43:29,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-10-27 00:43:30,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-10-27 00:43:30,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:43:31,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-27 00:43:31,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-10-27 00:43:31,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:43:31,983 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-10-27 00:43:32,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-10-27 00:43:32,448 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-27 00:43:33,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-10-27 00:43:33,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:43:34,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-27 00:43:34,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-10-27 00:43:35,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:43:35,045 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-10-27 00:43:35,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-10-27 00:43:35,499 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-27 00:43:36,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-10-27 00:43:36,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:43:37,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-27 00:43:38,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-10-27 00:43:38,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:43:38,426 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-10-27 00:43:38,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-10-27 00:43:39,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-10-27 00:43:39,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-10-27 00:43:40,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-10-27 00:43:40,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-10-27 00:43:41,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-10-27 00:43:41,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-10-27 00:43:41,708 [ scc.repo] DEBUG ## Branches found:
2025-10-27 00:43:41,708 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-10-27 00:43:41,708 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:43:41,708 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:41,711 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-27 00:43:41,713 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-27 00:43:41,713 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-27 00:43:41,715 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-27 00:43:41,718 [ scc.git] DEBUG Already up to date.
2025-10-27 00:43:41,718 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-10-27 00:43:41,999 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-10-27 00:43:41,999 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-10-27 00:43:42,003 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-10-27 00:43:42,287 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-10-27 00:43:42,287 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-10-27 00:43:42,291 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-10-27 00:43:42,571 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-10-27 00:43:42,571 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-10-27 00:43:42,575 [ scc.git] DEBUG ## Unique users: []
2025-10-27 00:43:42,575 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:43:42,576 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:42,578 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-10-27 00:43:42,580 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:42,582 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-10-27 00:43:42,589 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-27 00:43:42,592 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-10-27 00:43:42,592 [ scc.git] DEBUG package.json | 2 +-
2025-10-27 00:43:42,592 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-10-27 00:43:42,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:43:42,811 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-10-27 00:43:42,813 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:42,816 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-10-27 00:43:42,824 [ scc.git] DEBUG Auto-merging package-lock.json
2025-10-27 00:43:42,824 [ scc.git] DEBUG Auto-merging package.json
2025-10-27 00:43:42,825 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-27 00:43:42,828 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-10-27 00:43:42,828 [ scc.git] DEBUG package.json | 2 +-
2025-10-27 00:43:42,828 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-10-27 00:43:43,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:43:43,216 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-10-27 00:43:43,219 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:43,221 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-10-27 00:43:43,228 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-27 00:43:43,230 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-10-27 00:43:43,230 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-10-27 00:43:43,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:43:43,599 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-27 00:43:43,635 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:43:43,635 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:43,637 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-27 00:43:43,672 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-27 00:43:43,675 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f85ec6156d0> has no local changes
2025-10-27 00:43:43,675 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#568 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/)'
2025-10-27 00:43:43,680 [ scc.git] DEBUG [detached HEAD b3a5002] merge master -Dorg -Ssuccess-only
2025-10-27 00:43:43,680 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:43:43,680 [ scc.repo] DEBUG ## PRs found:
2025-10-27 00:43:44,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2025-10-27 00:43:44,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2025-10-27 00:43:44,546 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-27 00:43:45,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-10-27 00:43:45,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:43:46,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-27 00:43:46,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-10-27 00:43:47,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:43:47,102 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:43:47,102 [ scc.repo] DEBUG ## Branches found:
2025-10-27 00:43:47,102 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-10-27 00:43:47,102 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:43:47,102 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:47,105 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-27 00:43:47,107 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-27 00:43:47,107 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-27 00:43:47,109 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-27 00:43:47,112 [ scc.git] DEBUG Already up to date.
2025-10-27 00:43:47,112 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2025-10-27 00:43:47,412 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2025-10-27 00:43:47,413 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2025-10-27 00:43:47,416 [ scc.git] DEBUG ## Unique users: []
2025-10-27 00:43:47,416 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:43:47,416 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:47,418 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2025-10-27 00:43:47,421 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:47,423 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2025-10-27 00:43:47,428 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-27 00:43:47,431 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-10-27 00:43:47,431 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-10-27 00:43:47,575 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:43:47,576 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-27 00:43:47,613 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:43:47,613 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:47,615 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-27 00:43:47,649 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-27 00:43:47,652 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f85ee046950> has no local changes
2025-10-27 00:43:47,652 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#568 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/)'
2025-10-27 00:43:47,657 [ scc.git] DEBUG [detached HEAD f34c8d1] merge master -Dorg -Ssuccess-only
2025-10-27 00:43:47,658 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:43:47,658 [ scc.repo] DEBUG ## PRs found:
2025-10-27 00:43:48,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-10-27 00:43:48,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2025-10-27 00:43:48,646 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-27 00:43:49,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-10-27 00:43:49,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:43:50,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-27 00:43:50,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-10-27 00:43:51,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2025-10-27 00:43:51,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-10-27 00:43:52,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2025-10-27 00:43:52,056 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:43:52,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-10-27 00:43:52,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-10-27 00:43:53,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-10-27 00:43:53,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:43:54,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-27 00:43:55,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-10-27 00:43:55,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-10-27 00:43:55,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-10-27 00:43:56,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-10-27 00:43:56,354 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-10-27 00:43:56,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-10-27 00:43:56,821 [ scc.repo] DEBUG ## Branches found:
2025-10-27 00:43:56,821 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-10-27 00:43:56,821 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:43:56,821 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:56,824 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-27 00:43:56,826 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-27 00:43:56,826 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-27 00:43:56,828 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-27 00:43:56,831 [ scc.git] DEBUG Already up to date.
2025-10-27 00:43:56,831 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-10-27 00:43:57,124 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-10-27 00:43:57,124 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-10-27 00:43:57,128 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2025-10-27 00:43:57,411 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-10-27 00:43:57,411 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2025-10-27 00:43:57,414 [ scc.git] DEBUG ## Unique users: []
2025-10-27 00:43:57,414 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:43:57,414 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:57,416 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-10-27 00:43:57,419 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:57,421 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-10-27 00:43:57,427 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-27 00:43:57,430 [ scc.git] DEBUG setup.py | 4 +-
2025-10-27 00:43:57,430 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-10-27 00:43:57,430 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-10-27 00:43:57,430 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-10-27 00:43:57,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:43:57,572 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2025-10-27 00:43:57,575 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:57,577 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2025-10-27 00:43:57,584 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-27 00:43:57,586 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-10-27 00:43:57,586 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-10-27 00:43:57,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:43:57,974 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-27 00:43:58,011 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:43:58,011 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:43:58,013 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-27 00:43:58,047 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-27 00:43:58,050 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f85ec6415d0> has no local changes
2025-10-27 00:43:58,050 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#568 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/)'
2025-10-27 00:43:58,056 [ scc.git] DEBUG [detached HEAD 5a241b8] merge master -Dorg -Ssuccess-only
2025-10-27 00:43:58,056 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:43:58,056 [ scc.repo] DEBUG ## PRs found:
2025-10-27 00:43:58,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-10-27 00:43:59,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2025-10-27 00:43:59,094 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-27 00:43:59,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-10-27 00:44:00,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:44:00,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-27 00:44:01,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-10-27 00:44:01,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:44:01,706 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:44:02,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-10-27 00:44:02,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-10-27 00:44:03,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-10-27 00:44:03,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:44:04,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-10-27 00:44:04,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:44:04,585 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-10-27 00:44:04,585 [ scc.repo] DEBUG ## Branches found:
2025-10-27 00:44:04,585 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-10-27 00:44:04,585 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:04,585 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:04,587 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-27 00:44:04,589 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-27 00:44:04,589 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-27 00:44:04,592 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-27 00:44:04,594 [ scc.git] DEBUG Already up to date.
2025-10-27 00:44:04,594 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-10-27 00:44:04,897 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-10-27 00:44:04,897 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-10-27 00:44:04,901 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-10-27 00:44:05,178 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-10-27 00:44:05,178 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-10-27 00:44:05,182 [ scc.git] DEBUG ## Unique users: []
2025-10-27 00:44:05,182 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:05,182 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:05,184 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-10-27 00:44:05,187 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:05,190 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-10-27 00:44:05,197 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-10-27 00:44:05,197 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-10-27 00:44:05,197 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-10-27 00:44:05,197 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-10-27 00:44:05,197 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-10-27 00:44:05,197 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-10-27 00:44:05,198 [ scc.git] DEBUG Auto-merging setup.py
2025-10-27 00:44:05,198 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-10-27 00:44:05,198 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-10-27 00:44:05,198 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-10-27 00:44:05,200 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-10-27 00:44:05,204 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-10-27 00:44:05,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:44:05,343 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-10-27 00:44:05,346 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-10-27 00:44:05,349 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#568](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/views.py
- omero_signup/urls.py
- omero_signup/signup_settings.py
- setup.py
--conflicts
2025-10-27 00:44:05,351 [ scc.config] DEBUG Found github.token
2025-10-27 00:44:05,351 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-10-27 00:44:05,351 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-10-27 00:44:05,353 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:05,355 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-10-27 00:44:05,361 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-27 00:44:05,364 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-10-27 00:44:05,364 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-10-27 00:44:05,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:44:05,732 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-27 00:44:05,768 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:05,768 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:05,769 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-27 00:44:05,804 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-27 00:44:05,807 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f85ec61a890> has no local changes
2025-10-27 00:44:05,807 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#568 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/)'
2025-10-27 00:44:05,812 [ scc.git] DEBUG [detached HEAD 4292576] merge master -Dorg -Ssuccess-only
2025-10-27 00:44:05,812 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:44:05,812 [ scc.repo] DEBUG ## PRs found:
2025-10-27 00:44:06,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-10-27 00:44:06,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-10-27 00:44:07,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-10-27 00:44:07,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:44:08,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-27 00:44:08,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-10-27 00:44:09,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:44:09,268 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-10-27 00:44:09,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-10-27 00:44:10,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-10-27 00:44:10,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-10-27 00:44:11,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:44:11,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-27 00:44:12,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-10-27 00:44:12,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-10-27 00:44:13,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-10-27 00:44:13,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-10-27 00:44:14,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-10-27 00:44:14,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:44:15,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-10-27 00:44:15,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:44:15,778 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-10-27 00:44:15,778 [ scc.repo] DEBUG ## Branches found:
2025-10-27 00:44:15,778 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-10-27 00:44:15,778 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:15,778 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:15,781 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-27 00:44:15,783 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-27 00:44:15,783 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-27 00:44:15,786 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-27 00:44:15,788 [ scc.git] DEBUG Already up to date.
2025-10-27 00:44:15,788 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-10-27 00:44:16,084 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-10-27 00:44:16,084 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-10-27 00:44:16,087 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-10-27 00:44:16,377 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-10-27 00:44:16,377 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-10-27 00:44:16,381 [ scc.git] DEBUG ## Unique users: []
2025-10-27 00:44:16,381 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:16,381 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:16,383 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-10-27 00:44:16,387 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:16,389 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-10-27 00:44:16,399 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-27 00:44:16,402 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-10-27 00:44:16,402 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-10-27 00:44:16,402 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-10-27 00:44:16,402 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-10-27 00:44:16,402 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-10-27 00:44:16,402 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-10-27 00:44:16,403 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-10-27 00:44:16,403 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-10-27 00:44:16,403 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-10-27 00:44:16,403 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-10-27 00:44:16,403 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-10-27 00:44:16,403 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-10-27 00:44:16,403 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-10-27 00:44:16,403 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-10-27 00:44:16,403 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-10-27 00:44:16,403 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-10-27 00:44:16,403 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-10-27 00:44:16,403 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-10-27 00:44:16,403 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-10-27 00:44:16,403 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-10-27 00:44:16,403 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-10-27 00:44:16,403 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-10-27 00:44:16,403 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-10-27 00:44:16,403 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-10-27 00:44:16,403 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-10-27 00:44:16,403 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-10-27 00:44:16,403 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-10-27 00:44:16,403 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-10-27 00:44:16,403 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-10-27 00:44:16,404 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-10-27 00:44:16,404 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-10-27 00:44:16,404 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-10-27 00:44:16,404 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-10-27 00:44:16,404 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-10-27 00:44:16,404 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-10-27 00:44:16,404 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-10-27 00:44:16,404 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-10-27 00:44:16,404 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-10-27 00:44:16,404 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-10-27 00:44:16,404 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-10-27 00:44:16,404 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-10-27 00:44:16,404 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-10-27 00:44:16,404 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-10-27 00:44:16,404 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-10-27 00:44:16,404 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-10-27 00:44:16,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:44:16,535 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-10-27 00:44:16,539 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:16,541 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-10-27 00:44:16,549 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-27 00:44:16,551 [ scc.git] DEBUG docker | 1 +
2025-10-27 00:44:16,551 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-10-27 00:44:16,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:44:16,923 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-27 00:44:16,959 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:16,959 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:16,961 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-27 00:44:16,997 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-27 00:44:17,000 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f85ee0465d0> has no local changes
2025-10-27 00:44:17,000 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#568 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/)'
2025-10-27 00:44:17,007 [ scc.git] DEBUG [detached HEAD 29f346d] merge master -Dorg -Ssuccess-only
2025-10-27 00:44:17,007 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:44:17,007 [ scc.repo] DEBUG ## PRs found:
2025-10-27 00:44:17,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2025-10-27 00:44:17,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2025-10-27 00:44:17,940 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-27 00:44:18,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-10-27 00:44:19,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:44:19,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-27 00:44:20,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-10-27 00:44:20,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:44:20,866 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:44:20,866 [ scc.repo] DEBUG ## Branches found:
2025-10-27 00:44:20,866 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-10-27 00:44:20,866 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:20,866 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:20,869 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-27 00:44:20,871 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-27 00:44:20,871 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-27 00:44:20,873 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-27 00:44:20,876 [ scc.git] DEBUG Already up to date.
2025-10-27 00:44:20,876 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-10-27 00:44:21,163 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2025-10-27 00:44:21,163 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-10-27 00:44:21,167 [ scc.git] DEBUG ## Unique users: []
2025-10-27 00:44:21,167 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:21,167 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:21,169 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-10-27 00:44:21,171 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:21,173 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-10-27 00:44:21,180 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-27 00:44:21,182 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-10-27 00:44:21,182 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-10-27 00:44:21,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:44:21,329 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-27 00:44:21,365 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:21,365 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:21,367 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-27 00:44:21,401 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-27 00:44:21,403 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f85edff4e10> has no local changes
2025-10-27 00:44:21,404 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#568 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/)'
2025-10-27 00:44:21,409 [ scc.git] DEBUG [detached HEAD 87119e2] merge master -Dorg -Ssuccess-only
2025-10-27 00:44:21,409 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:44:21,409 [ scc.repo] DEBUG ## PRs found:
2025-10-27 00:44:21,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2025-10-27 00:44:22,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2025-10-27 00:44:22,291 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-27 00:44:22,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-10-27 00:44:23,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:44:24,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-27 00:44:24,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-10-27 00:44:24,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:44:24,972 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:44:24,972 [ scc.repo] DEBUG ## Branches found:
2025-10-27 00:44:24,972 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-10-27 00:44:24,972 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:24,972 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:24,975 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-27 00:44:24,977 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-27 00:44:24,977 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-27 00:44:24,979 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-27 00:44:24,986 [ scc.git] DEBUG Updating deab817..160d894
2025-10-27 00:44:25,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-10-27 00:44:25,612 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-10-27 00:44:25,913 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2025-10-27 00:44:25,913 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-10-27 00:44:25,917 [ scc.git] DEBUG ## Unique users: []
2025-10-27 00:44:25,917 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:25,917 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:25,919 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-10-27 00:44:25,922 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:25,924 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-10-27 00:44:25,930 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-27 00:44:25,933 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-10-27 00:44:25,933 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-10-27 00:44:26,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:44:26,080 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-27 00:44:26,115 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:26,115 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:26,117 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-27 00:44:26,151 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-27 00:44:26,154 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f85edfede50> has no local changes
2025-10-27 00:44:26,154 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#568 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/)'
2025-10-27 00:44:26,159 [ scc.git] DEBUG [detached HEAD ee7bb00] merge master -Dorg -Ssuccess-only
2025-10-27 00:44:26,159 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:44:26,159 [ scc.git] INFO Overriding base-branch from master to main
2025-10-27 00:44:26,159 [ scc.repo] DEBUG ## PRs found:
2025-10-27 00:44:26,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-10-27 00:44:27,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-10-27 00:44:27,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2025-10-27 00:44:28,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-10-27 00:44:28,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:44:29,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-27 00:44:29,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-10-27 00:44:30,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:44:30,383 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-10-27 00:44:30,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-10-27 00:44:31,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-10-27 00:44:31,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-10-27 00:44:32,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-10-27 00:44:32,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:44:33,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-10-27 00:44:33,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:44:33,694 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-10-27 00:44:33,694 [ scc.repo] DEBUG ## Branches found:
2025-10-27 00:44:33,694 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-10-27 00:44:33,694 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:33,694 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:33,697 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-10-27 00:44:33,699 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-27 00:44:33,699 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-10-27 00:44:33,702 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-10-27 00:44:33,708 [ scc.git] DEBUG Updating 8f3c313..00e0207
2025-10-27 00:44:34,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2025-10-27 00:44:34,331 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-10-27 00:44:34,614 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-10-27 00:44:34,614 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-10-27 00:44:34,618 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-10-27 00:44:34,909 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-10-27 00:44:34,909 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-10-27 00:44:34,913 [ scc.git] DEBUG ## Unique users: []
2025-10-27 00:44:34,913 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:34,913 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:34,915 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-10-27 00:44:34,918 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:34,920 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-10-27 00:44:34,927 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-10-27 00:44:34,927 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-10-27 00:44:34,927 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-10-27 00:44:34,927 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-10-27 00:44:34,927 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-10-27 00:44:34,929 [ scc.git] DEBUG Calling 'git reset --hard 00e02072dc29b04eba14c080ca8a0175a1499c15'
2025-10-27 00:44:34,933 [ scc.git] DEBUG HEAD is now at 00e0207 Merge pull request #20 from will-moore/zarr_python_v3
2025-10-27 00:44:35,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:44:35,087 [ scc.git] DEBUG Calling 'git merge-base 00e02072dc29b04eba14c080ca8a0175a1499c15 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-10-27 00:44:35,090 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..00e02072dc29b04eba14c080ca8a0175a1499c15'
2025-10-27 00:44:35,092 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#568](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-10-27 00:44:35,094 [ scc.config] DEBUG Found github.token
2025-10-27 00:44:35,094 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-10-27 00:44:35,094 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-10-27 00:44:35,097 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:35,099 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-10-27 00:44:35,106 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-10-27 00:44:35,107 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-27 00:44:35,109 [ scc.git] DEBUG README.rst | 3 +
2025-10-27 00:44:35,109 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2025-10-27 00:44:35,110 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-10-27 00:44:35,110 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2025-10-27 00:44:35,110 [ scc.git] DEBUG setup.py | 5 +-
2025-10-27 00:44:35,110 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2025-10-27 00:44:35,110 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-10-27 00:44:35,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:44:35,478 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-27 00:44:35,514 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:35,514 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:35,516 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-27 00:44:35,550 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-27 00:44:35,553 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f85ee046790> has no local changes
2025-10-27 00:44:35,553 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..00e0207
Previously merged:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#568 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/)'
2025-10-27 00:44:35,559 [ scc.git] DEBUG [detached HEAD 20fe2de] merge master -Dorg -Ssuccess-only
2025-10-27 00:44:35,560 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:44:35,560 [ scc.repo] DEBUG ## PRs found:
2025-10-27 00:44:35,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2025-10-27 00:44:36,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2025-10-27 00:44:36,417 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-27 00:44:36,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-10-27 00:44:37,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:44:37,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-27 00:44:38,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-10-27 00:44:38,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:44:38,942 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:44:38,942 [ scc.repo] DEBUG ## Branches found:
2025-10-27 00:44:38,942 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-10-27 00:44:38,942 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:38,942 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:38,944 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-27 00:44:38,946 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-27 00:44:38,946 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-27 00:44:38,949 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-27 00:44:38,952 [ scc.git] DEBUG Already up to date.
2025-10-27 00:44:38,952 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2025-10-27 00:44:39,249 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2025-10-27 00:44:39,249 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2025-10-27 00:44:39,252 [ scc.git] DEBUG ## Unique users: []
2025-10-27 00:44:39,252 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:39,252 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:39,254 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-10-27 00:44:39,257 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:39,259 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-10-27 00:44:39,265 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-27 00:44:39,268 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-10-27 00:44:39,268 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-10-27 00:44:39,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:44:39,408 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-27 00:44:39,443 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:39,443 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:39,445 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-27 00:44:39,480 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-27 00:44:39,483 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f85ec6bd9d0> has no local changes
2025-10-27 00:44:39,483 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#568 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/)'
2025-10-27 00:44:39,489 [ scc.git] DEBUG [detached HEAD aeeb999] merge master -Dorg -Ssuccess-only
2025-10-27 00:44:39,489 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:44:39,489 [ scc.repo] DEBUG ## PRs found:
2025-10-27 00:44:39,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2025-10-27 00:44:40,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2025-10-27 00:44:40,367 [ scc.repo] DEBUG # ... Include label: dependencies
2025-10-27 00:44:40,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-10-27 00:44:41,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:44:41,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-27 00:44:42,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-10-27 00:44:42,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:44:42,917 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:44:42,917 [ scc.repo] DEBUG ## Branches found:
2025-10-27 00:44:42,917 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-10-27 00:44:42,917 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:42,917 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:42,919 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-27 00:44:42,922 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-27 00:44:42,922 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-27 00:44:42,924 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-27 00:44:42,927 [ scc.git] DEBUG Already up to date.
2025-10-27 00:44:42,927 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2025-10-27 00:44:43,217 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2025-10-27 00:44:43,217 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2025-10-27 00:44:43,221 [ scc.git] DEBUG ## Unique users: []
2025-10-27 00:44:43,221 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:43,221 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:43,223 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-10-27 00:44:43,225 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:43,227 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-10-27 00:44:43,234 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-27 00:44:43,237 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-10-27 00:44:43,237 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-10-27 00:44:43,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:44:43,389 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-27 00:44:43,424 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:43,425 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:43,427 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-27 00:44:43,462 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-27 00:44:43,465 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f85ec662550> has no local changes
2025-10-27 00:44:43,465 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#568 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/)'
2025-10-27 00:44:43,471 [ scc.git] DEBUG [detached HEAD 2f90752] merge master -Dorg -Ssuccess-only
2025-10-27 00:44:43,471 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:44:43,471 [ scc.repo] DEBUG ## PRs found:
2025-10-27 00:44:43,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-10-27 00:44:44,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-10-27 00:44:44,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-10-27 00:44:45,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-10-27 00:44:45,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:44:46,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-10-27 00:44:46,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:44:46,738 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-10-27 00:44:46,738 [ scc.repo] DEBUG ## Branches found:
2025-10-27 00:44:46,738 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-10-27 00:44:46,738 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:46,738 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:46,740 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-10-27 00:44:46,743 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-27 00:44:46,743 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-10-27 00:44:46,745 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-10-27 00:44:46,748 [ scc.git] DEBUG Already up to date.
2025-10-27 00:44:46,748 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-10-27 00:44:47,036 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-10-27 00:44:47,036 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-10-27 00:44:47,040 [ scc.git] DEBUG ## Unique users: []
2025-10-27 00:44:47,040 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:47,040 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:47,042 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-10-27 00:44:47,045 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:47,047 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-10-27 00:44:47,054 [ scc.git] DEBUG Auto-merging Dockerfile
2025-10-27 00:44:47,054 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-10-27 00:44:47,054 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-10-27 00:44:47,055 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-10-27 00:44:47,057 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-10-27 00:44:47,061 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-10-27 00:44:47,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:44:47,227 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-10-27 00:44:47,230 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-10-27 00:44:47,232 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#568](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-10-27 00:44:47,234 [ scc.config] DEBUG Found github.token
2025-10-27 00:44:47,234 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-10-27 00:44:47,234 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-27 00:44:47,269 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:47,269 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:47,271 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-27 00:44:47,305 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-27 00:44:47,309 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f85ec6e6410> has no local changes
2025-10-27 00:44:47,309 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#568 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/)'
2025-10-27 00:44:47,314 [ scc.git] DEBUG [detached HEAD 99bdfa5] merge master -Dorg -Ssuccess-only
2025-10-27 00:44:47,315 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:44:47,315 [ scc.git] INFO Overriding base-branch from master to develop
2025-10-27 00:44:47,315 [ scc.repo] DEBUG ## PRs found:
2025-10-27 00:44:47,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-10-27 00:44:48,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-10-27 00:44:48,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-10-27 00:44:49,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-10-27 00:44:49,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:44:50,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-10-27 00:44:50,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-10-27 00:44:51,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:44:51,076 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-10-27 00:44:51,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-10-27 00:44:52,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-10-27 00:44:52,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-10-27 00:44:52,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-10-27 00:44:53,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-10-27 00:44:53,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-10-27 00:44:53,941 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-10-27 00:44:54,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-10-27 00:44:54,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-10-27 00:44:55,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-10-27 00:44:55,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-10-27 00:44:55,908 [ scc.repo] DEBUG ## Branches found:
2025-10-27 00:44:55,908 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-10-27 00:44:55,908 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:55,908 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:55,910 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-10-27 00:44:55,912 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-10-27 00:44:55,912 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-10-27 00:44:55,915 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-10-27 00:44:55,924 [ scc.git] DEBUG Updating 4b4c755..03b9116
2025-10-27 00:44:56,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2025-10-27 00:44:57,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-10-27 00:44:57,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-10-27 00:44:57,824 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-10-27 00:44:58,133 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-10-27 00:44:58,133 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-10-27 00:44:58,137 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-10-27 00:44:58,448 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-10-27 00:44:58,448 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-10-27 00:44:58,452 [ scc.git] DEBUG ## Unique users: []
2025-10-27 00:44:58,452 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:58,452 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:58,454 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-10-27 00:44:58,459 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:58,461 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-10-27 00:44:58,470 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-10-27 00:44:58,471 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-10-27 00:44:58,471 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-10-27 00:44:58,473 [ scc.git] DEBUG Calling 'git reset --hard 03b9116196e1a799dd18a666559613d912be01a5'
2025-10-27 00:44:58,477 [ scc.git] DEBUG HEAD is now at 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0
2025-10-27 00:44:58,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:44:58,634 [ scc.git] DEBUG Calling 'git merge-base 03b9116196e1a799dd18a666559613d912be01a5 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-10-27 00:44:58,639 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..03b9116196e1a799dd18a666559613d912be01a5'
2025-10-27 00:44:58,643 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#568](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-10-27 00:44:58,645 [ scc.config] DEBUG Found github.token
2025-10-27 00:44:58,645 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-10-27 00:44:58,645 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-10-27 00:44:58,649 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:58,651 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-10-27 00:44:58,658 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-10-27 00:44:58,661 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-10-27 00:44:58,661 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-10-27 00:44:59,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:44:59,026 [ scc.git] DEBUG Calling 'git submodule update'
2025-10-27 00:44:59,061 [ scc.git] DEBUG Get sha1 of %s
2025-10-27 00:44:59,061 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-10-27 00:44:59,063 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-27 00:44:59,097 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-27 00:44:59,100 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f85ec6d3590> has no local changes
2025-10-27 00:44:59,100 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..03b9116
Previously merged:
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#568 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/)'
2025-10-27 00:44:59,106 [ scc.git] DEBUG [detached HEAD dae4538] merge master -Dorg -Ssuccess-only
2025-10-27 00:44:59,106 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:44:59,106 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-10-27 00:44:59,174 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-10-27 00:44:59,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:44:59,434 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-10-27 00:44:59,436 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-10-27 00:44:59,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:44:59,982 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-10-27 00:44:59,984 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-10-27 00:45:00,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:00,524 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-10-27 00:45:00,526 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-10-27 00:45:00,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:00,910 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-10-27 00:45:01,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:01,317 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-10-27 00:45:01,319 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-10-27 00:45:01,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:01,722 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-10-27 00:45:01,724 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-10-27 00:45:02,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:02,138 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-10-27 00:45:02,140 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-10-27 00:45:02,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:02,524 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-10-27 00:45:02,525 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-10-27 00:45:02,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:02,959 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-10-27 00:45:02,961 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-10-27 00:45:03,354 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:03,359 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-10-27 00:45:03,360 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-10-27 00:45:03,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:03,751 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-10-27 00:45:03,753 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-10-27 00:45:04,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:04,141 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-10-27 00:45:04,143 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-10-27 00:45:04,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:04,597 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-10-27 00:45:04,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:04,990 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-10-27 00:45:05,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:05,380 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-10-27 00:45:05,382 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-10-27 00:45:05,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:05,778 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-10-27 00:45:06,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:06,161 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-10-27 00:45:06,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:06,562 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-10-27 00:45:06,564 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-10-27 00:45:06,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:06,967 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-10-27 00:45:06,969 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-10-27 00:45:07,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:07,352 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-10-27 00:45:07,354 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-10-27 00:45:07,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:07,763 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-10-27 00:45:07,765 [ scc.config] DEBUG Found submodule.scripts.url
2025-10-27 00:45:08,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-10-27 00:45:08,154 [ scc.config] DEBUG Found submodule.scripts.branch
2025-10-27 00:45:08,155 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-10-27 00:45:08,228 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f85ee017a50> has local changes
2025-10-27 00:45:08,228 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
- PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..37ea700
Previously merged:
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 181 will-moore 'Add labels support for import'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..baab5c06
Previously merged:
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
Conflicting PRs (not included):
- PR 637 Rdornier 'Fix scalebar position'
- PR 643 Rdornier 'Shape scaling'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..00e0207
Previously merged:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..03b9116
Previously merged:
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#568 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/568/)'
2025-10-27 00:45:08,237 [ scc.git] DEBUG [detached HEAD be71daf] merge master -Dorg -Ssuccess-only
2025-10-27 00:45:08,237 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-10-27 00:45:08,238 [ scc.merge] INFO Repository: ome/omero-plugins
2025-10-27 00:45:08,238 [ scc.merge] INFO Already up to date.
2025-10-27 00:45:08,238 [ scc.merge] INFO
2025-10-27 00:45:08,238 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-10-27 00:45:08,238 [ scc.merge] INFO
2025-10-27 00:45:08,238 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-10-27 00:45:08,238 [ scc.merge] INFO Already up to date.
2025-10-27 00:45:08,238 [ scc.merge] INFO
2025-10-27 00:45:08,238 [ scc.merge] INFO
2025-10-27 00:45:08,238 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-10-27 00:45:08,238 [ scc.merge] INFO Excluded PRs:
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-10-27 00:45:08,238 [ scc.merge] INFO Already up to date.
2025-10-27 00:45:08,238 [ scc.merge] INFO
2025-10-27 00:45:08,238 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:45:08,238 [ scc.merge] INFO
2025-10-27 00:45:08,238 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-10-27 00:45:08,238 [ scc.merge] INFO Excluded PRs:
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-10-27 00:45:08,238 [ scc.merge] INFO Already up to date.
2025-10-27 00:45:08,238 [ scc.merge] INFO
2025-10-27 00:45:08,238 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:45:08,238 [ scc.merge] INFO
2025-10-27 00:45:08,238 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-10-27 00:45:08,238 [ scc.merge] INFO Excluded PRs:
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-10-27 00:45:08,238 [ scc.merge] INFO Updating 11d3587..37ea700
2025-10-27 00:45:08,238 [ scc.merge] INFO Previously merged:
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-10-27 00:45:08,238 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-10-27 00:45:08,239 [ scc.merge] INFO
2025-10-27 00:45:08,239 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2025-10-27 00:45:08,239 [ scc.merge] INFO
2025-10-27 00:45:08,239 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2025-10-27 00:45:08,239 [ scc.merge] INFO
2025-10-27 00:45:08,239 [ scc.merge] INFO Repository: ome/omero-figure
2025-10-27 00:45:08,239 [ scc.merge] INFO Excluded PRs:
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-10-27 00:45:08,239 [ scc.merge] INFO Updating 9cc36cde..baab5c06
2025-10-27 00:45:08,239 [ scc.merge] INFO Previously merged:
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-10-27 00:45:08,239 [ scc.merge] INFO
2025-10-27 00:45:08,239 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2025-10-27 00:45:08,239 [ scc.merge] INFO
2025-10-27 00:45:08,239 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 643 Rdornier 'Shape scaling'
2025-10-27 00:45:08,239 [ scc.merge] INFO
2025-10-27 00:45:08,239 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-10-27 00:45:08,239 [ scc.merge] INFO Already up to date.
2025-10-27 00:45:08,239 [ scc.merge] INFO
2025-10-27 00:45:08,239 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-10-27 00:45:08,239 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:45:08,239 [ scc.merge] INFO
2025-10-27 00:45:08,239 [ scc.merge] INFO Repository: ome/omero-gallery
2025-10-27 00:45:08,239 [ scc.merge] INFO Already up to date.
2025-10-27 00:45:08,239 [ scc.merge] INFO
2025-10-27 00:45:08,240 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-10-27 00:45:08,240 [ scc.merge] INFO
2025-10-27 00:45:08,240 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-10-27 00:45:08,240 [ scc.merge] INFO
2025-10-27 00:45:08,240 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-10-27 00:45:08,240 [ scc.merge] INFO Excluded PRs:
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-10-27 00:45:08,240 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-10-27 00:45:08,240 [ scc.merge] INFO Previously merged:
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-10-27 00:45:08,240 [ scc.merge] INFO
2025-10-27 00:45:08,240 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-10-27 00:45:08,240 [ scc.merge] INFO
2025-10-27 00:45:08,240 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-10-27 00:45:08,240 [ scc.merge] INFO
2025-10-27 00:45:08,240 [ scc.merge] INFO Repository: ome/omero-mapr
2025-10-27 00:45:08,240 [ scc.merge] INFO Excluded PRs:
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-10-27 00:45:08,240 [ scc.merge] INFO Already up to date.
2025-10-27 00:45:08,240 [ scc.merge] INFO
2025-10-27 00:45:08,240 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-10-27 00:45:08,240 [ scc.merge] INFO
2025-10-27 00:45:08,240 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:45:08,240 [ scc.merge] INFO
2025-10-27 00:45:08,240 [ scc.merge] INFO Repository: ome/omero-metadata
2025-10-27 00:45:08,240 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-10-27 00:45:08,240 [ scc.merge] INFO Previously merged:
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-10-27 00:45:08,240 [ scc.merge] INFO
2025-10-27 00:45:08,240 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-10-27 00:45:08,240 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-10-27 00:45:08,241 [ scc.merge] INFO
2025-10-27 00:45:08,241 [ scc.merge] INFO Repository: ome/omero-parade
2025-10-27 00:45:08,241 [ scc.merge] INFO Excluded PRs:
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-10-27 00:45:08,241 [ scc.merge] INFO Already up to date.
2025-10-27 00:45:08,241 [ scc.merge] INFO
2025-10-27 00:45:08,241 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-10-27 00:45:08,241 [ scc.merge] INFO
2025-10-27 00:45:08,241 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-10-27 00:45:08,241 [ scc.merge] INFO Already up to date.
2025-10-27 00:45:08,241 [ scc.merge] INFO
2025-10-27 00:45:08,241 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:45:08,241 [ scc.merge] INFO
2025-10-27 00:45:08,241 [ scc.merge] INFO Repository: ome/omero-rois
2025-10-27 00:45:08,241 [ scc.merge] INFO Excluded PRs:
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-10-27 00:45:08,241 [ scc.merge] INFO Already up to date.
2025-10-27 00:45:08,241 [ scc.merge] INFO
2025-10-27 00:45:08,241 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:45:08,241 [ scc.merge] INFO
2025-10-27 00:45:08,241 [ scc.merge] INFO Repository: ome/omero-signup
2025-10-27 00:45:08,241 [ scc.merge] INFO Already up to date.
2025-10-27 00:45:08,241 [ scc.merge] INFO
2025-10-27 00:45:08,241 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:45:08,241 [ scc.merge] INFO
2025-10-27 00:45:08,241 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-10-27 00:45:08,241 [ scc.merge] INFO
2025-10-27 00:45:08,241 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-10-27 00:45:08,241 [ scc.merge] INFO Excluded PRs:
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-10-27 00:45:08,241 [ scc.merge] INFO Already up to date.
2025-10-27 00:45:08,241 [ scc.merge] INFO
2025-10-27 00:45:08,241 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-10-27 00:45:08,241 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-10-27 00:45:08,241 [ scc.merge] INFO
2025-10-27 00:45:08,241 [ scc.merge] INFO Repository: ome/omero-upload
2025-10-27 00:45:08,241 [ scc.merge] INFO Already up to date.
2025-10-27 00:45:08,242 [ scc.merge] INFO
2025-10-27 00:45:08,242 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,242 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:45:08,242 [ scc.merge] INFO
2025-10-27 00:45:08,242 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-10-27 00:45:08,242 [ scc.merge] INFO Updating deab817..160d894
2025-10-27 00:45:08,242 [ scc.merge] INFO Previously merged:
2025-10-27 00:45:08,242 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-10-27 00:45:08,242 [ scc.merge] INFO
2025-10-27 00:45:08,242 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,242 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:45:08,242 [ scc.merge] INFO
2025-10-27 00:45:08,242 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-10-27 00:45:08,242 [ scc.merge] INFO Excluded PRs:
2025-10-27 00:45:08,242 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-10-27 00:45:08,242 [ scc.merge] INFO Updating 8f3c313..00e0207
2025-10-27 00:45:08,242 [ scc.merge] INFO Previously merged:
2025-10-27 00:45:08,242 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-10-27 00:45:08,242 [ scc.merge] INFO
2025-10-27 00:45:08,242 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,242 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-10-27 00:45:08,242 [ scc.merge] INFO
2025-10-27 00:45:08,242 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-27 00:45:08,242 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-10-27 00:45:08,242 [ scc.merge] INFO
2025-10-27 00:45:08,242 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-10-27 00:45:08,242 [ scc.merge] INFO Already up to date.
2025-10-27 00:45:08,242 [ scc.merge] INFO
2025-10-27 00:45:08,242 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,242 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:45:08,242 [ scc.merge] INFO
2025-10-27 00:45:08,242 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-10-27 00:45:08,242 [ scc.merge] INFO Already up to date.
2025-10-27 00:45:08,242 [ scc.merge] INFO
2025-10-27 00:45:08,242 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,242 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-10-27 00:45:08,242 [ scc.merge] INFO
2025-10-27 00:45:08,242 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-10-27 00:45:08,242 [ scc.merge] INFO Already up to date.
2025-10-27 00:45:08,242 [ scc.merge] INFO
2025-10-27 00:45:08,242 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-27 00:45:08,242 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-10-27 00:45:08,242 [ scc.merge] INFO
2025-10-27 00:45:08,242 [ scc.merge] INFO Repository: ome/scripts
2025-10-27 00:45:08,242 [ scc.merge] INFO Excluded PRs:
2025-10-27 00:45:08,242 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-10-27 00:45:08,242 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-10-27 00:45:08,242 [ scc.merge] INFO Updating 4b4c755..03b9116
2025-10-27 00:45:08,242 [ scc.merge] INFO Previously merged:
2025-10-27 00:45:08,242 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2025-10-27 00:45:08,242 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-10-27 00:45:08,242 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-10-27 00:45:08,242 [ scc.merge] INFO
2025-10-27 00:45:08,243 [ scc.merge] INFO Merged PRs:
2025-10-27 00:45:08,243 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-10-27 00:45:08,243 [ scc.merge] INFO
2025-10-27 00:45:08,243 [ scc.merge] INFO Conflicting PRs (not included):
2025-10-27 00:45:08,243 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-10-27 00:45:08,243 [ scc.merge] INFO
2025-10-27 00:45:08,243 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-10-27 00:45:08,243 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,245 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-10-27 00:45:08,245 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,247 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,247 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-10-27 00:45:08,247 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,249 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,249 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-10-27 00:45:08,249 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,251 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,251 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-10-27 00:45:08,251 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,253 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,253 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-10-27 00:45:08,253 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-10-27 00:45:08,255 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,257 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,257 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-10-27 00:45:08,257 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-10-27 00:45:08,259 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,260 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,261 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-10-27 00:45:08,261 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,262 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,262 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-10-27 00:45:08,262 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,264 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,264 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-10-27 00:45:08,264 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,266 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,266 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-10-27 00:45:08,266 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,268 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,268 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-10-27 00:45:08,268 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,270 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,270 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-10-27 00:45:08,270 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,272 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,272 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-10-27 00:45:08,272 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,275 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,275 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-10-27 00:45:08,275 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,277 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,277 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-10-27 00:45:08,277 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,279 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,279 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-10-27 00:45:08,279 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,281 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,281 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-10-27 00:45:08,281 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,283 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,283 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-10-27 00:45:08,283 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,285 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,285 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-10-27 00:45:08,285 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,287 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-10-27 00:45:08,287 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-10-27 00:45:08,287 [ scc.git] DEBUG Calling 'git remote'
2025-10-27 00:45:08,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 92d849d] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 520a51c] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-10-27 00:45:53,529 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-10-27 00:46:03,158 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-10-27 00:46:06,110 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-10-27 00:46:10,819 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-10-27 00:46:49,315 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
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