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#14 1080.6 Progress (3): 435 kB | 338/632 kB | 163/195 kB
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#14 1080.6 Progress (2): 354/632 kB | 175/195 kB
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#14 1080.6 Progress (4): 632 kB | 76 kB | 37 kB | 16/263 kB
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#14 1080.6 Progress (3): 632 kB | 37 kB | 94/263 kB
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#14 1080.6 Progress (2): 37 kB | 250/263 kB
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#14 1080.7 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-velocity/1.1.7/plexus-velocity-1.1.7.jar
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#14 1080.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/velocity/velocity/1.5/velocity-1.5.jar
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#14 1080.7 Downloading from central: https://repo.maven.apache.org/maven2/commons-lang/commons-lang/2.1/commons-lang-2.1.jar
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#14 1080.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-decoration-model/1.0/doxia-decoration-model-1.0.jar
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#14 1080.7 Progress (3): 7.7 kB | 74/392 kB | 8.2/208 kB
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#14 1080.7 Progress (3): 7.7 kB | 74/392 kB | 12/208 kB
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#14 1080.7 Progress (4): 368/392 kB | 208 kB | 81/571 kB | 47 kB
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#14 1080.7 Progress (4): 377/392 kB | 208 kB | 85/571 kB | 47 kB
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#14 1080.7 Progress (3): 392 kB | 162/571 kB | 47 kB
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#14 1080.7 Progress (3): 392 kB | 167/571 kB | 47 kB
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#14 1080.7 Progress (2): 392 kB | 302/571 kB
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#14 1080.7 Progress (2): 392 kB | 306/571 kB
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#14 1080.7 Progress (2): 380/571 kB | 19 kB
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#14 1080.7 Progress (2): 384/571 kB | 19 kB
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#14 1080.7 Progress (4): 571 kB | 28 kB | 22 kB | 4.1/153 kB
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#14 1080.7 Progress (3): 571 kB | 22 kB | 68/153 kB
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#14 1080.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-xhtml/1.0/doxia-module-xhtml-1.0.jar (22 kB at 41 kB/s)
#14 1080.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/jdom/jdom/1.1/jdom-1.1.jar (153 kB at 284 kB/s)
#14 1081.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.13.0/maven-scm-provider-gitexe-1.13.0.pom
#14 1081.0 Progress (1): 2.6 kB
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#14 1081.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers-git/1.13.0/maven-scm-providers-git-1.13.0.pom
#14 1081.0 Progress (1): 2.2 kB
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#14 1081.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers/1.13.0/maven-scm-providers-1.13.0.pom
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#14 1081.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.13.0/maven-scm-provider-gitexe-1.13.0.jar
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#14 1081.2 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.13.0/maven-scm-provider-gitexe-1.13.0.jar (72 kB at 2.0 MB/s)
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#14 1081.2 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.3.1/plexus-utils-3.3.1.jar (262 kB at 6.2 MB/s)
#14 1081.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-manager-plexus/1.13.0/maven-scm-manager-plexus-1.13.0.pom
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#14 1081.3 Downloading from central: https://repo.maven.apache.org/maven2/junit/junit/4.13.1/junit-4.13.1.pom
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#14 1081.4 Downloading from central: https://repo.maven.apache.org/maven2/org/kathrynhuxtable/maven/wagon/wagon-gitsite/0.3.1/wagon-gitsite-0.3.1.pom
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#14 1081.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-api/1.3/maven-scm-api-1.3.pom
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#14 1081.9 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-api/1.3/maven-scm-api-1.3.jar (89 kB at 2.6 MB/s)
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#14 1082.0 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.8/nexus-staging-maven-plugin-1.6.8.pom
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#14 1082.0 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-staging/1.6.8/nexus-staging-1.6.8.pom
#14 1082.0 Progress (1): 2.8 kB
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#14 1082.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-maven-plugins/1.6.8/nexus-maven-plugins-1.6.8.pom
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#14 1082.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/buildsupport/public-parent/6/public-parent-6.pom
#14 1082.1 Progress (1): 760 B
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#14 1082.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/buildsupport/buildsupport/6/buildsupport-6.pom
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#14 1082.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plexus/plexus-cipher/1.7/plexus-cipher-1.7.pom
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#14 1082.2 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/14.0.1/guava-14.0.1.pom
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#14 1082.2 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava-parent/14.0.1/guava-parent-14.0.1.pom
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#14 1082.3 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-client-core/2.14.3-02/nexus-client-core-2.14.3-02.pom
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#14 1082.3 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-components/2.14.3-02/nexus-components-2.14.3-02.pom
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#14 1082.3 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-parent/2.14.3-02/nexus-parent-2.14.3-02.pom
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#14 1082.3 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/buildsupport/public-parent/9/public-parent-9.pom
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#14 1082.5 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-commons/2.14.3-02/nexus-buildsupport-commons-2.14.3-02.pom
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#14 1083.3 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-db/2.14.3-02/nexus-buildsupport-db-2.14.3-02.pom
#14 1083.4 Progress (1): 3.2 kB
Downloaded from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-db/2.14.3-02/nexus-buildsupport-db-2.14.3-02.pom (3.2 kB at 17 kB/s)
#14 1083.5 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-gwt/2.14.3-02/nexus-buildsupport-gwt-2.14.3-02.pom
#14 1083.5 Progress (1): 2.2 kB
Downloaded from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-gwt/2.14.3-02/nexus-buildsupport-gwt-2.14.3-02.pom (2.2 kB at 12 kB/s)
#14 1083.6 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-httpclient/2.14.3-02/nexus-buildsupport-httpclient-2.14.3-02.pom
#14 1083.7 Progress (1): 2.1 kB
Downloaded from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-httpclient/2.14.3-02/nexus-buildsupport-httpclient-2.14.3-02.pom (2.1 kB at 12 kB/s)
#14 1083.8 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-insight/2.14.3-02/nexus-buildsupport-insight-2.14.3-02.pom
#14 1083.9 Progress (1): 3.5/4.4 kB
Progress (1): 4.4 kB
Downloaded from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-insight/2.14.3-02/nexus-buildsupport-insight-2.14.3-02.pom (4.4 kB at 24 kB/s)
#14 1084.0 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/
#14 1084.0 [output clipped, log limit 2MiB reached]
#14 1196.4 SLF4J: No SLF4J providers were found.
#14 1196.4 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 1196.4 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 1203.4s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.317 Buildfile: /bio-formats-build/bioformats/build.xml
#16 0.642 [echo] isSnapshot = true
#16 2.755
#16 2.755 copy-jars:
#16 2.755
#16 2.755 deps-formats-api:
#16 2.838 [echo] isSnapshot = true
#16 2.900
#16 2.900 install-pom:
#16 3.102 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/pom-bio-formats-8.2.0-SNAPSHOT.pom
#16 3.109 [resolver:install] Installing ome:pom-bio-formats:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 3.114 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 3.116
#16 3.116 jar-formats-api:
#16 3.239 [echo] isSnapshot = true
#16 3.422
#16 3.422 init-title:
#16 3.422 [echo] ----------=========== formats-api ===========----------
#16 3.423
#16 3.423 init-timestamp:
#16 3.427
#16 3.427 init:
#16 3.427
#16 3.427 copy-resources:
#16 3.428 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.443 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.445
#16 3.445 compile:
#16 3.629 [resolver:resolve] Resolving artifacts
#16 3.657 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.330 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.330 [javac] import loci.common.ReflectedUniverse;
#16 4.331 [javac] ^
#16 4.531 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.531 [javac] int currentIndex = r.getCoreIndex();
#16 4.531 [javac] ^
#16 4.531 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.531 [javac] r.setCoreIndex(coreIndex);
#16 4.531 [javac] ^
#16 4.531 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.531 [javac] r.setCoreIndex(currentIndex);
#16 4.531 [javac] ^
#16 4.632 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.632 [javac] public void setCoreIndex(int no) {
#16 4.632 [javac] ^
#16 4.632 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.632 [javac] public int getCoreIndex() {
#16 4.632 [javac] ^
#16 4.632 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.632 [javac] public int coreIndexToSeries(int index)
#16 4.632 [javac] ^
#16 4.633 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.633 [javac] public int seriesToCoreIndex(int series)
#16 4.633 [javac] ^
#16 4.633 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.633 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.633 [javac] ^
#16 4.733 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.733 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.733 [javac] ^
#16 4.733 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.733 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.733 [javac] ^
#16 4.734 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.734 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.734 [javac] ^
#16 4.734 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.734 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.734 [javac] ^
#16 4.734 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.734 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.734 [javac] ^
#16 4.734 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.734 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.734 [javac] ^
#16 4.935 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.935 [javac] public void setCoreIndex(int no) {
#16 4.935 [javac] ^
#16 4.935 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.935 [javac] public int getCoreIndex() {
#16 4.935 [javac] ^
#16 4.935 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.935 [javac] public int coreIndexToSeries(int index) {
#16 4.935 [javac] ^
#16 4.936 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.936 [javac] public int seriesToCoreIndex(int series) {
#16 4.936 [javac] ^
#16 4.936 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.936 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.936 [javac] ^
#16 4.936 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.936 [javac] return getReader().getCoreMetadataList();
#16 4.936 [javac] ^
#16 4.936 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.936 [javac] return getReader().getCoreIndex();
#16 4.937 [javac] ^
#16 4.937 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.937 [javac] getReader().setCoreIndex(no);
#16 4.937 [javac] ^
#16 4.937 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.937 [javac] return getReader().seriesToCoreIndex(series);
#16 4.937 [javac] ^
#16 4.937 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.937 [javac] return getReader().coreIndexToSeries(index);
#16 4.937 [javac] ^
#16 4.937 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.937 [javac] public void setCoreIndex(int no) {
#16 4.937 [javac] ^
#16 4.937 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.937 [javac] public int getCoreIndex() {
#16 4.937 [javac] ^
#16 4.937 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.937 [javac] public int coreIndexToSeries(int index) {
#16 4.937 [javac] ^
#16 4.937 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.937 [javac] public int seriesToCoreIndex(int series) {
#16 4.937 [javac] ^
#16 4.938 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.938 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.938 [javac] ^
#16 5.038 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.038 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 5.038 [javac] ^
#16 5.038 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.038 [javac] return reader.getCoreIndex();
#16 5.038 [javac] ^
#16 5.038 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.038 [javac] reader.setCoreIndex(no);
#16 5.038 [javac] ^
#16 5.038 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.038 [javac] return reader.seriesToCoreIndex(series);
#16 5.039 [javac] ^
#16 5.039 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.039 [javac] return reader.coreIndexToSeries(index);
#16 5.039 [javac] ^
#16 5.139 [javac] Note: Some input files use unchecked or unsafe operations.
#16 5.139 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 5.139 [javac] 35 warnings
#16 5.157
#16 5.157 formats-api.jar:
#16 5.158 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 5.184 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 5.219 [resolver:install] Using default POM (ome:formats-api:8.2.0-SNAPSHOT)
#16 5.223 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.pom
#16 5.227 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.jar
#16 5.228 [resolver:install] Installing ome:formats-api:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 5.230 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 5.231
#16 5.231 deps-turbojpeg:
#16 5.231
#16 5.231 jar-turbojpeg:
#16 5.344 [echo] isSnapshot = true
#16 5.515
#16 5.515 init-title:
#16 5.516 [echo] ----------=========== turbojpeg ===========----------
#16 5.516
#16 5.516 init-timestamp:
#16 5.516
#16 5.516 init:
#16 5.516
#16 5.516 copy-resources:
#16 5.516 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.517
#16 5.517 compile:
#16 5.528 [resolver:resolve] Resolving artifacts
#16 5.532 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.281
#16 6.281 jar:
#16 6.286 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.479 [resolver:install] Using default POM (ome:turbojpeg:8.2.0-SNAPSHOT)
#16 6.488 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.pom
#16 6.491 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.jar
#16 6.493 [resolver:install] Installing ome:turbojpeg:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 6.497 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.498
#16 6.498 deps-formats-bsd:
#16 6.498
#16 6.498 jar-formats-bsd:
#16 6.604 [echo] isSnapshot = true
#16 6.778
#16 6.778 init-title:
#16 6.778 [echo] ----------=========== formats-bsd ===========----------
#16 6.778
#16 6.778 init-timestamp:
#16 6.779
#16 6.779 init:
#16 6.779
#16 6.779 copy-resources:
#16 6.779 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.782 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.783
#16 6.783 compile:
#16 6.992 [resolver:resolve] Resolving artifacts
#16 7.023 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.232 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.232 [javac] import loci.common.ReflectedUniverse;
#16 8.232 [javac] ^
#16 8.533 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.533 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.533 [javac] ^
#16 8.533 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.533 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.533 [javac] ^
#16 8.633 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.633 [javac] int n = reader.getCoreMetadataList().size();
#16 8.633 [javac] ^
#16 8.633 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.633 [javac] reader.setCoreIndex(coreIndex);
#16 8.633 [javac] ^
#16 8.634 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.634 [javac] int n = reader.getCoreMetadataList().size();
#16 8.634 [javac] ^
#16 8.634 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.634 [javac] int n = reader.getCoreMetadataList().size();
#16 8.634 [javac] ^
#16 8.634 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.634 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.634 [javac] ^
#16 8.634 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.634 [javac] int n = reader.getCoreMetadataList().size();
#16 8.634 [javac] ^
#16 8.634 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.634 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.634 [javac] ^
#16 8.634 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.634 [javac] int n = reader.getCoreMetadataList().size();
#16 8.634 [javac] ^
#16 8.634 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.634 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.634 [javac] ^
#16 8.634 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.635 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.635 [javac] ^
#16 8.635 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.635 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.635 [javac] ^
#16 8.635 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.635 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.635 [javac] ^
#16 8.635 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.635 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.635 [javac] ^
#16 8.635 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.635 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.635 [javac] ^
#16 8.635 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.635 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.635 [javac] ^
#16 8.635 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.635 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.635 [javac] ^
#16 8.635 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.635 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.636 [javac] ^
#16 9.036 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.036 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 9.036 [javac] ^
#16 9.136 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.136 [javac] BitWriter out = new BitWriter();
#16 9.136 [javac] ^
#16 9.136 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.136 [javac] BitWriter out = new BitWriter();
#16 9.136 [javac] ^
#16 10.04 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.04 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 10.04 [javac] ^
#16 10.04 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 10.04 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 10.04 [javac] ^
#16 10.14 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.14 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 10.14 [javac] ^
#16 10.14 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.14 [javac] protected ReflectedUniverse r;
#16 10.14 [javac] ^
#16 10.14 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.14 [javac] r = new ReflectedUniverse();
#16 10.14 [javac] ^
#16 10.14 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 10.14 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 10.14 [javac] ^
#16 10.24 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 10.24 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 10.24 [javac] ^
#16 10.24 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 10.24 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 10.24 [javac] ^
#16 10.24 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 10.24 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 10.24 [javac] ^
#16 10.24 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 10.24 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 10.24 [javac] ^
#16 10.24 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 10.24 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 10.24 [javac] ^
#16 10.24 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 10.24 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 10.24 [javac] ^
#16 10.24 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 10.24 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 10.24 [javac] ^
#16 10.24 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 10.24 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 10.24 [javac] ^
#16 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.34 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.34 [javac] ^
#16 10.34 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.34 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.34 [javac] 38 warnings
#16 10.57
#16 10.57 formats-bsd.jar:
#16 10.58 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.71 [resolver:install] Using default POM (ome:formats-bsd:8.2.0-SNAPSHOT)
#16 10.72 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.pom
#16 10.72 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.jar
#16 10.72 [resolver:install] Installing ome:formats-bsd:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 10.73 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.73
#16 10.73 deps-formats-gpl:
#16 10.73
#16 10.73 jar-formats-gpl:
#16 10.83 [echo] isSnapshot = true
#16 11.01
#16 11.01 init-title:
#16 11.01 [echo] ----------=========== formats-gpl ===========----------
#16 11.01
#16 11.01 init-timestamp:
#16 11.01
#16 11.01 init:
#16 11.01
#16 11.01 copy-resources:
#16 11.01 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.01 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.01
#16 11.01 compile:
#16 11.47 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.74 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 12.05 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 12.05 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 12.07 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 12.34 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 12.39 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 12.40 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 12.67 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 12.72 [resolver:resolve] Resolving artifacts
#16 12.73 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 12.73 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 12.77 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 12.77 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 12.92 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 13.19 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 13.21 [javac] Compiling 176 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.21 [javac] import loci.formats.codec.BitWriter;
#16 14.21 [javac] ^
#16 14.21 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.21 [javac] import loci.formats.codec.BitWriter;
#16 14.21 [javac] ^
#16 16.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 16.32 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 16.32 [javac] ^
#16 16.32 [javac] cast to Object for a varargs call
#16 16.32 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 16.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.32 [javac] BitWriter bits = null;
#16 16.32 [javac] ^
#16 16.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.32 [javac] bits = new BitWriter(planes[index].length / 8);
#16 16.32 [javac] ^
#16 16.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 16.62 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 16.62 [javac] ^
#16 17.02 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.02 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.02 [javac] ^
#16 17.02 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.02 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.02 [javac] ^
#16 17.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 17.30 [javac] Variable variable = group.findVariable(variableName);
#16 17.30 [javac] ^
#16 17.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 17.30 [javac] Variable variable = group.findVariable(variableName);
#16 17.30 [javac] ^
#16 17.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 17.30 [javac] List<Attribute> attributes = variable.getAttributes();
#16 17.30 [javac] ^
#16 17.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.30 [javac] String groupName = group.getName();
#16 17.30 [javac] ^
#16 17.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 17.30 [javac] List<Attribute> attributes = group.getAttributes();
#16 17.30 [javac] ^
#16 17.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.30 [javac] String variableName = variable.getName();
#16 17.30 [javac] ^
#16 17.30 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 17.30 [javac] Group nextParent = parent.findGroup(token);
#16 17.30 [javac] ^
#16 17.30 [javac] Note: Some input files use unchecked or unsafe operations.
#16 17.30 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.30 [javac] 15 warnings
#16 17.31
#16 17.31 formats-gpl.jar:
#16 17.32 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 17.49 [resolver:install] Using default POM (ome:formats-gpl:8.2.0-SNAPSHOT)
#16 17.49 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.pom
#16 17.50 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.jar
#16 17.50 [resolver:install] Installing ome:formats-gpl:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 17.50 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 17.50
#16 17.50 deps-bio-formats-plugins:
#16 17.50
#16 17.50 jar-bio-formats-plugins:
#16 17.62 [echo] isSnapshot = true
#16 17.80
#16 17.80 init-title:
#16 17.80 [echo] ----------=========== bio-formats_plugins ===========----------
#16 17.80
#16 17.80 init-timestamp:
#16 17.80
#16 17.80 init:
#16 17.80
#16 17.80 copy-resources:
#16 17.80 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.80 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.81
#16 17.81 compile:
#16 18.07 [resolver:resolve] Resolving artifacts
#16 18.09 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.91 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.91 [javac] import loci.common.ReflectedUniverse;
#16 18.91 [javac] ^
#16 18.91 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.91 [javac] import loci.common.ReflectedUniverse;
#16 18.91 [javac] ^
#16 19.31 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 19.31 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 19.31 [javac] ^
#16 19.51 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.51 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.51 [javac] ^
#16 19.51 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.51 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.51 [javac] ^
#16 19.61 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.61 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 19.61 [javac] ^
#16 19.61 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.61 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 19.61 [javac] ^
#16 19.91 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 19.91 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 19.91 [javac] 7 warnings
#16 19.94
#16 19.94 bio-formats-plugins.jar:
#16 19.94 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 19.97 [resolver:install] Using default POM (ome:bio-formats_plugins:8.2.0-SNAPSHOT)
#16 19.98 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.pom
#16 19.98 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.jar
#16 19.98 [resolver:install] Installing ome:bio-formats_plugins:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 19.98 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 19.99
#16 19.99 deps-bio-formats-tools:
#16 19.99
#16 19.99 jar-bio-formats-tools:
#16 20.09 [echo] isSnapshot = true
#16 20.27
#16 20.27 init-title:
#16 20.27 [echo] ----------=========== bio-formats-tools ===========----------
#16 20.27
#16 20.27 init-timestamp:
#16 20.27
#16 20.27 init:
#16 20.27
#16 20.27 copy-resources:
#16 20.27 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.27
#16 20.27 compile:
#16 20.53 [resolver:resolve] Resolving artifacts
#16 20.55 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.52
#16 21.52 bio-formats-tools.jar:
#16 21.53 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 21.54 [resolver:install] Using default POM (ome:bio-formats-tools:8.2.0-SNAPSHOT)
#16 21.54 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.pom
#16 21.54 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.jar
#16 21.55 [resolver:install] Installing ome:bio-formats-tools:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 21.55 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 21.55
#16 21.55 deps-tests:
#16 21.55
#16 21.55 jar-tests:
#16 21.66 [echo] isSnapshot = true
#16 21.83
#16 21.83 init-title:
#16 21.83 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 21.83
#16 21.83 init-timestamp:
#16 21.83
#16 21.83 init:
#16 21.83
#16 21.83 copy-resources:
#16 21.83 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.83
#16 21.83 compile:
#16 22.16 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 22.24 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 22.25 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 22.88 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 23.32 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 23.40 [resolver:resolve] Resolving artifacts
#16 23.41 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.45 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.46 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.86 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 24.22 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 24.23 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 25.25 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.25 [javac] int index = unflattenedReader.getCoreIndex();
#16 25.25 [javac] ^
#16 25.25 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 25.25 [javac] reader.setCoreIndex(index);
#16 25.25 [javac] ^
#16 25.45 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2263: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.45 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 25.45 [javac] ^
#16 25.45 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2429: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.45 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 25.45 [javac] ^
#16 25.74 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.74 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 25.74 [javac] ^
#16 25.74 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.74 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 25.74 [javac] ^
#16 25.74 [javac] Note: Some input files use unchecked or unsafe operations.
#16 25.74 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 25.74 [javac] 6 warnings
#16 25.74
#16 25.74 tests.jar:
#16 25.74 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 25.76 [resolver:install] Using default POM (ome:test-suite:8.2.0-SNAPSHOT)
#16 25.76 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.pom
#16 25.77 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.jar
#16 25.77 [resolver:install] Installing ome:test-suite:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 25.77 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 25.77
#16 25.77 jars:
#16 25.77
#16 25.77 copy-jars:
#16 25.77
#16 25.77 deps-formats-api:
#16 25.84 [echo] isSnapshot = true
#16 25.89
#16 25.89 install-pom:
#16 26.11 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/pom-bio-formats-8.2.0-SNAPSHOT.pom
#16 26.11 [resolver:install] Installing ome:pom-bio-formats:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 26.11 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 26.11
#16 26.11 jar-formats-api:
#16 26.21 [echo] isSnapshot = true
#16 26.38
#16 26.38 init-title:
#16 26.38 [echo] ----------=========== formats-api ===========----------
#16 26.38
#16 26.38 init-timestamp:
#16 26.39
#16 26.39 init:
#16 26.39
#16 26.39 copy-resources:
#16 26.39
#16 26.39 compile:
#16 26.53 [resolver:resolve] Resolving artifacts
#16 26.54
#16 26.54 formats-api.jar:
#16 26.56 [resolver:install] Using default POM (ome:formats-api:8.2.0-SNAPSHOT)
#16 26.56 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.pom
#16 26.57 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.jar
#16 26.57 [resolver:install] Installing ome:formats-api:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 26.57 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 26.57
#16 26.57 deps-turbojpeg:
#16 26.57
#16 26.57 jar-turbojpeg:
#16 26.80 [echo] isSnapshot = true
#16 26.97
#16 26.97 init-title:
#16 26.97 [echo] ----------=========== turbojpeg ===========----------
#16 26.97
#16 26.97 init-timestamp:
#16 26.97
#16 26.97 init:
#16 26.97
#16 26.97 copy-resources:
#16 26.98
#16 26.98 compile:
#16 26.99 [resolver:resolve] Resolving artifacts
#16 26.99
#16 26.99 jar:
#16 26.99 [resolver:install] Using default POM (ome:turbojpeg:8.2.0-SNAPSHOT)
#16 27.00 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.pom
#16 27.01 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.jar
#16 27.01 [resolver:install] Installing ome:turbojpeg:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 27.02 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 27.02
#16 27.02 deps-formats-bsd:
#16 27.02
#16 27.02 jar-formats-bsd:
#16 27.11 [echo] isSnapshot = true
#16 27.28
#16 27.28 init-title:
#16 27.28 [echo] ----------=========== formats-bsd ===========----------
#16 27.28
#16 27.28 init-timestamp:
#16 27.28
#16 27.28 init:
#16 27.28
#16 27.28 copy-resources:
#16 27.28
#16 27.28 compile:
#16 27.48 [resolver:resolve] Resolving artifacts
#16 27.50
#16 27.50 formats-bsd.jar:
#16 27.53 [resolver:install] Using default POM (ome:formats-bsd:8.2.0-SNAPSHOT)
#16 27.54 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.pom
#16 27.54 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.jar
#16 27.54 [resolver:install] Installing ome:formats-bsd:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 27.54 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 27.54
#16 27.54 deps-formats-gpl:
#16 27.54
#16 27.54 jar-formats-gpl:
#16 27.64 [echo] isSnapshot = true
#16 27.81
#16 27.81 init-title:
#16 27.81 [echo] ----------=========== formats-gpl ===========----------
#16 27.81
#16 27.81 init-timestamp:
#16 27.81
#16 27.81 init:
#16 27.81
#16 27.81 copy-resources:
#16 27.81
#16 27.81 compile:
#16 28.04 [resolver:resolve] Resolving artifacts
#16 28.07
#16 28.07 formats-gpl.jar:
#16 28.10 [resolver:install] Using default POM (ome:formats-gpl:8.2.0-SNAPSHOT)
#16 28.11 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.pom
#16 28.11 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.jar
#16 28.11 [resolver:install] Installing ome:formats-gpl:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 28.11 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 28.11
#16 28.11 deps-bio-formats-plugins:
#16 28.11
#16 28.11 jar-bio-formats-plugins:
#16 28.21 [echo] isSnapshot = true
#16 28.38
#16 28.38 init-title:
#16 28.38 [echo] ----------=========== bio-formats_plugins ===========----------
#16 28.38
#16 28.38 init-timestamp:
#16 28.38
#16 28.38 init:
#16 28.38
#16 28.38 copy-resources:
#16 28.38
#16 28.38 compile:
#16 28.63 [resolver:resolve] Resolving artifacts
#16 28.65
#16 28.65 bio-formats-plugins.jar:
#16 28.66 [resolver:install] Using default POM (ome:bio-formats_plugins:8.2.0-SNAPSHOT)
#16 28.67 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.pom
#16 28.67 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.jar
#16 28.67 [resolver:install] Installing ome:bio-formats_plugins:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 28.67 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 28.67
#16 28.67 deps-bio-formats-tools:
#16 28.67
#16 28.67 jar-bio-formats-tools:
#16 28.77 [echo] isSnapshot = true
#16 28.94
#16 28.94 init-title:
#16 28.94 [echo] ----------=========== bio-formats-tools ===========----------
#16 28.94
#16 28.94 init-timestamp:
#16 28.94
#16 28.94 init:
#16 28.94
#16 28.94 copy-resources:
#16 28.94
#16 28.94 compile:
#16 29.21 [resolver:resolve] Resolving artifacts
#16 29.23
#16 29.23 bio-formats-tools.jar:
#16 29.23 [resolver:install] Using default POM (ome:bio-formats-tools:8.2.0-SNAPSHOT)
#16 29.23 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.pom
#16 29.29 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.jar
#16 29.29 [resolver:install] Installing ome:bio-formats-tools:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 29.30 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 29.30
#16 29.30 deps-tests:
#16 29.30
#16 29.30 jar-tests:
#16 29.39 [echo] isSnapshot = true
#16 29.57
#16 29.57 init-title:
#16 29.57 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 29.57
#16 29.57 init-timestamp:
#16 29.57
#16 29.57 init:
#16 29.57
#16 29.57 copy-resources:
#16 29.57
#16 29.57 compile:
#16 29.85 [resolver:resolve] Resolving artifacts
#16 29.86
#16 29.86 tests.jar:
#16 29.87 [resolver:install] Using default POM (ome:test-suite:8.2.0-SNAPSHOT)
#16 29.87 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.pom
#16 29.88 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.jar
#16 29.88 [resolver:install] Installing ome:test-suite:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 29.88 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 29.88
#16 29.88 jars:
#16 29.88
#16 29.88 tools:
#16 29.88 [echo] ----------=========== bioformats_package ===========----------
#16 29.98 [echo] isSnapshot = true
#16 30.16
#16 30.16 init-timestamp:
#16 30.16
#16 30.16 bundle:
#16 30.49 [resolver:resolve] Resolving artifacts
#16 30.51 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.55 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.26-SNAPSHOT/ome-common-6.0.26-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.58 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.60 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.61 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.69 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.71 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.77 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.79 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.07 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.13 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.15 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.23 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.24 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.25 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.25 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.46 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.07 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.08 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.08 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.09 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.19 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.20 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.21 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.0-SNAPSHOT/ome-xml-6.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.28 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.0-SNAPSHOT/specification-6.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.36 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.38 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.1-SNAPSHOT/ome-codecs-1.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.39 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.57 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.66 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.71 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.72 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.76 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.79 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.38 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.41 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.45 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.54 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.67 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.69 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.72 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.73 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.02 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.11 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.18 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.31 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.33 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/metakit-5.8.9-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.33 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.48 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.49 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.08 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.09 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.23 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.29 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.31 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.32 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.39 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.43 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.88 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.90 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.91 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.93 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.93 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.97 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.45 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.58 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 37.09 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 44.97 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.84 [resolver:install] Using default POM (ome:bioformats_package:8.2.0-SNAPSHOT)
#16 45.84 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.2.0-SNAPSHOT/bioformats_package-8.2.0-SNAPSHOT.pom
#16 45.84 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.2.0-SNAPSHOT/bioformats_package-8.2.0-SNAPSHOT.jar
#16 45.89 [resolver:install] Installing ome:bioformats_package:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 45.89 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 45.90
#16 45.90 BUILD SUCCESSFUL
#16 45.90 Total time: 45 seconds
#16 DONE 48.1s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 4.0s done
#18 writing image sha256:ab9cd158b1c3e7134cc1268097f72e7e2bd1b8279defde0903df7b6f54c2cdf9 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 4.0s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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