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Full Log#14 429.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/4.2.7/plexus-archiver-4.2.7.jar
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#14 429.4 Progress (4): 290 kB | 265/632 kB | 154 kB | 19/195 kB
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#14 429.4 Progress (4): 290 kB | 269/632 kB | 154 kB | 27/195 kB
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#14 429.5 Progress (3): 306/632 kB | 154 kB | 60/195 kB
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#14 429.5 Progress (2): 380/632 kB | 142/195 kB
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#14 429.5 Progress (4): 632 kB | 76 kB | 37 kB | 57/263 kB
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#14 429.5 Progress (4): 632 kB | 76 kB | 37 kB | 61/263 kB
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#14 429.5 Progress (3): 632 kB | 37 kB | 201/263 kB
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#14 430.2 Downloading from central: https://repo.maven.apache.org/maven2/org/kathrynhuxtable/maven/wagon/wagon-gitsite/0.3.1/wagon-gitsite-0.3.1.pom
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#14 430.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-api/1.3/maven-scm-api-1.3.pom
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#14 430.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm/1.3/maven-scm-1.3.pom
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#14 430.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-manager-plexus/1.3/maven-scm-manager-plexus-1.3.pom
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#14 430.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-managers/1.3/maven-scm-managers-1.3.pom
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#14 430.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-container-default/1.5.4/plexus-container-default-1.5.4.pom
#14 430.4 Progress (1): 2.8 kB
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#14 430.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.2.2/plexus-classworlds-2.2.2.pom
#14 430.4 Progress (1): 4.0 kB
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#14 430.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus/2.0.3/plexus-2.0.3.pom
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#14 430.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/xbean/xbean-reflect/3.4/xbean-reflect-3.4.pom
#14 430.4 Progress (1): 2.8 kB
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#14 430.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/xbean/xbean/3.4/xbean-3.4.pom
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#14 430.5 Downloading from central: https://repo.maven.apache.org/maven2/commons-logging/commons-logging-api/1.1/commons-logging-api-1.1.pom
#14 430.5 Progress (1): 4.1/5.3 kB
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#14 430.5 Downloading from central: https://repo.maven.apache.org/maven2/com/google/collections/google-collections/1.0/google-collections-1.0.pom
#14 430.5 Progress (1): 2.5 kB
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#14 430.5 Downloading from central: https://repo.maven.apache.org/maven2/com/google/google/1/google-1.pom
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#14 430.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.3/maven-scm-provider-gitexe-1.3.pom
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#14 430.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers-git/1.3/maven-scm-providers-git-1.3.pom
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#14 430.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers/1.3/maven-scm-providers-1.3.pom
#14 430.6 Progress (1): 3.6 kB
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#14 430.6 Downloading from central: https://repo.maven.apache.org/maven2/regexp/regexp/1.3/regexp-1.3.pom
#14 430.7 Progress (1): 145 B
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#14 430.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-git-commons/1.3/maven-scm-provider-git-commons-1.3.pom
#14 430.7 Progress (1): 2.2 kB
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#14 430.7 Downloading from central: https://repo.maven.apache.org/maven2/org/kathrynhuxtable/maven/wagon/wagon-gitsite/0.3.1/wagon-gitsite-0.3.1.jar
#14 430.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-manager-plexus/1.3/maven-scm-manager-plexus-1.3.jar
#14 430.7 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/1.5.8/plexus-utils-1.5.8.jar
#14 430.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.3/maven-scm-provider-gitexe-1.3.jar
#14 430.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-api/1.3/maven-scm-api-1.3.jar
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#14 430.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/kathrynhuxtable/maven/wagon/wagon-gitsite/0.3.1/wagon-gitsite-0.3.1.jar (20 kB at 730 kB/s)
#14 430.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-git-commons/1.3/maven-scm-provider-git-commons-1.3.jar
#14 430.7 Progress (3): 196/268 kB | 89 kB | 49 kB
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#14 430.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-api/1.3/maven-scm-api-1.3.jar (89 kB at 2.7 MB/s)
#14 430.7 Progress (2): 268 kB | 4.1/37 kB
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#14 430.8 Downloaded from central: https://repo.maven.apache.org/maven2/regexp/regexp/1.3/regexp-1.3.jar (25 kB at 471 kB/s)
#14 430.8 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-git-commons/1.3/maven-scm-provider-git-commons-1.3.jar (37 kB at 666 kB/s)
#14 430.8 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.8/nexus-staging-maven-plugin-1.6.8.pom
#14 430.8 Progress (1): 4.1/12 kB
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#14 430.8 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-staging/1.6.8/nexus-staging-1.6.8.pom
#14 430.8 Progress (1): 2.8 kB
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#14 430.8 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-maven-plugins/1.6.8/nexus-maven-plugins-1.6.8.pom
#14 430.8 Progress (1): 4.1/18 kB
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#14 430.9 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/buildsupport/public-parent/6/public-parent-6.pom
#14 430.9 Progress (1): 760 B
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#14 430.9 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/buildsupport/buildsupport/6/buildsupport-6.pom
#14 430.9 Progress (1): 4.1/23 kB
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#14 430.9 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-common/1.6.8/nexus-common-1.6.8.pom
#14 430.9 Progress (1): 2.2 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-common/1.6.8/nexus-common-1.6.8.pom (2.2 kB at 89 kB/s)
#14 430.9 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plexus/plexus-cipher/1.7/plexus-cipher-1.7.pom
#14 431.0 Progress (1): 4.1/4.2 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/plexus/plexus-cipher/1.7/plexus-cipher-1.7.pom (4.2 kB at 174 kB/s)
#14 431.0 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/14.0.1/guava-14.0.1.pom
#14 431.0 Progress (1): 4.1/5.4 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/14.0.1/guava-14.0.1.pom (5.4 kB at 224 kB/s)
#14 431.0 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava-parent/14.0.1/guava-parent-14.0.1.pom
#14 431.0 Progress (1): 2.6 kB
Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava-parent/14.0.1/guava-parent-14.0.1.pom (2.6 kB at 106 kB/s)
#14 431.0 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-client-core/2.14.3-02/nexus-client-core-2.14.3-02.pom
#14 431.0 Progress (1): 4.1/4.9 kB
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#14 431.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-components/2.14.3-02/nexus-components-2.14.3-02.pom
#14 431.1 Progress (1): 2.6 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-components/2.14.3-02/nexus-components-2.14.3-02.pom (2.6 kB at 104 kB/s)
#14 431.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/nexus-parent/2.14.3-02/nexus-parent-2.14.3-02.pom
#14 431.1 Progress (1): 4.1/38 kB
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#14 431.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/buildsupport/public-parent/9/public-parent-9.pom
#14 431.1 Progress (1): 760 B
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/buildsupport/public-parent/9/public-parent-9.pom (760 B at 30 kB/s)
#14 431.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/buildsupport/buildsupport/9/buildsupport-9.pom
#14 431.1 Progress (1): 4.1/24 kB
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#14 431.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/buildsupport/nexus-buildsupport-all/2.14.3-02/nexus-buildsupport-all-2.14
#14 431.2 [output clipped, log limit 2MiB reached]
#14 541.6 SLF4J: No SLF4J providers were found.
#14 541.6 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 541.6 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 549.0s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.327 Buildfile: /bio-formats-build/bioformats/build.xml
#16 0.646 [echo] isSnapshot = true
#16 2.755
#16 2.755 copy-jars:
#16 2.755
#16 2.755 deps-formats-api:
#16 2.837 [echo] isSnapshot = true
#16 2.913
#16 2.913 install-pom:
#16 3.128 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/pom-bio-formats-8.2.0-SNAPSHOT.pom
#16 3.134 [resolver:install] Installing ome:pom-bio-formats:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 3.141 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 3.144
#16 3.144 jar-formats-api:
#16 3.290 [echo] isSnapshot = true
#16 3.480
#16 3.480 init-title:
#16 3.481 [echo] ----------=========== formats-api ===========----------
#16 3.481
#16 3.481 init-timestamp:
#16 3.485
#16 3.485 init:
#16 3.485
#16 3.485 copy-resources:
#16 3.486 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.502 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.504
#16 3.504 compile:
#16 3.695 [resolver:resolve] Resolving artifacts
#16 3.785 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.399 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.399 [javac] import loci.common.ReflectedUniverse;
#16 4.399 [javac] ^
#16 4.599 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.599 [javac] int currentIndex = r.getCoreIndex();
#16 4.599 [javac] ^
#16 4.599 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.600 [javac] r.setCoreIndex(coreIndex);
#16 4.600 [javac] ^
#16 4.600 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.600 [javac] r.setCoreIndex(currentIndex);
#16 4.600 [javac] ^
#16 4.700 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.700 [javac] public void setCoreIndex(int no) {
#16 4.700 [javac] ^
#16 4.700 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.700 [javac] public int getCoreIndex() {
#16 4.700 [javac] ^
#16 4.700 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.700 [javac] public int coreIndexToSeries(int index)
#16 4.701 [javac] ^
#16 4.701 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.701 [javac] public int seriesToCoreIndex(int series)
#16 4.701 [javac] ^
#16 4.701 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.701 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.701 [javac] ^
#16 4.801 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.801 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.801 [javac] ^
#16 4.802 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.802 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.802 [javac] ^
#16 4.802 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.802 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.802 [javac] ^
#16 4.802 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.802 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.802 [javac] ^
#16 4.802 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.802 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.802 [javac] ^
#16 4.802 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.802 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.802 [javac] ^
#16 4.903 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.903 [javac] public void setCoreIndex(int no) {
#16 4.903 [javac] ^
#16 4.903 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.903 [javac] public int getCoreIndex() {
#16 4.903 [javac] ^
#16 4.903 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.903 [javac] public int coreIndexToSeries(int index) {
#16 4.903 [javac] ^
#16 4.903 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.903 [javac] public int seriesToCoreIndex(int series) {
#16 4.903 [javac] ^
#16 4.903 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.903 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.903 [javac] ^
#16 4.903 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.904 [javac] return getReader().getCoreMetadataList();
#16 4.904 [javac] ^
#16 5.004 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.004 [javac] return getReader().getCoreIndex();
#16 5.004 [javac] ^
#16 5.004 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.004 [javac] getReader().setCoreIndex(no);
#16 5.004 [javac] ^
#16 5.004 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.004 [javac] return getReader().seriesToCoreIndex(series);
#16 5.004 [javac] ^
#16 5.004 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.004 [javac] return getReader().coreIndexToSeries(index);
#16 5.004 [javac] ^
#16 5.004 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.005 [javac] public void setCoreIndex(int no) {
#16 5.005 [javac] ^
#16 5.005 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.005 [javac] public int getCoreIndex() {
#16 5.005 [javac] ^
#16 5.005 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.005 [javac] public int coreIndexToSeries(int index) {
#16 5.005 [javac] ^
#16 5.005 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.005 [javac] public int seriesToCoreIndex(int series) {
#16 5.005 [javac] ^
#16 5.005 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.005 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.005 [javac] ^
#16 5.005 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.005 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 5.005 [javac] ^
#16 5.005 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.005 [javac] return reader.getCoreIndex();
#16 5.005 [javac] ^
#16 5.005 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.005 [javac] reader.setCoreIndex(no);
#16 5.005 [javac] ^
#16 5.005 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.005 [javac] return reader.seriesToCoreIndex(series);
#16 5.006 [javac] ^
#16 5.006 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.006 [javac] return reader.coreIndexToSeries(index);
#16 5.006 [javac] ^
#16 5.188 [javac] Note: Some input files use unchecked or unsafe operations.
#16 5.188 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 5.188 [javac] 35 warnings
#16 5.188
#16 5.188 formats-api.jar:
#16 5.189 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 5.215 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 5.251 [resolver:install] Using default POM (ome:formats-api:8.2.0-SNAPSHOT)
#16 5.255 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.pom
#16 5.258 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.jar
#16 5.259 [resolver:install] Installing ome:formats-api:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 5.262 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 5.263
#16 5.263 deps-turbojpeg:
#16 5.263
#16 5.263 jar-turbojpeg:
#16 5.372 [echo] isSnapshot = true
#16 5.542
#16 5.542 init-title:
#16 5.542 [echo] ----------=========== turbojpeg ===========----------
#16 5.542
#16 5.542 init-timestamp:
#16 5.542
#16 5.542 init:
#16 5.543
#16 5.543 copy-resources:
#16 5.543 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.544
#16 5.544 compile:
#16 5.555 [resolver:resolve] Resolving artifacts
#16 5.560 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.263
#16 6.263 jar:
#16 6.267 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.459 [resolver:install] Using default POM (ome:turbojpeg:8.2.0-SNAPSHOT)
#16 6.467 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.pom
#16 6.470 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.jar
#16 6.472 [resolver:install] Installing ome:turbojpeg:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 6.476 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.477
#16 6.477 deps-formats-bsd:
#16 6.477
#16 6.477 jar-formats-bsd:
#16 6.580 [echo] isSnapshot = true
#16 6.753
#16 6.753 init-title:
#16 6.753 [echo] ----------=========== formats-bsd ===========----------
#16 6.753
#16 6.753 init-timestamp:
#16 6.753
#16 6.753 init:
#16 6.753
#16 6.753 copy-resources:
#16 6.754 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.757 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.758
#16 6.758 compile:
#16 6.968 [resolver:resolve] Resolving artifacts
#16 6.998 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.107 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.107 [javac] import loci.common.ReflectedUniverse;
#16 8.107 [javac] ^
#16 8.508 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.508 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.508 [javac] ^
#16 8.508 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.508 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.508 [javac] ^
#16 8.508 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.508 [javac] int n = reader.getCoreMetadataList().size();
#16 8.508 [javac] ^
#16 8.508 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.508 [javac] reader.setCoreIndex(coreIndex);
#16 8.508 [javac] ^
#16 8.508 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.508 [javac] int n = reader.getCoreMetadataList().size();
#16 8.508 [javac] ^
#16 8.508 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.508 [javac] int n = reader.getCoreMetadataList().size();
#16 8.508 [javac] ^
#16 8.508 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.508 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.508 [javac] ^
#16 8.508 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.508 [javac] int n = reader.getCoreMetadataList().size();
#16 8.508 [javac] ^
#16 8.509 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.509 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.509 [javac] ^
#16 8.509 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.509 [javac] int n = reader.getCoreMetadataList().size();
#16 8.509 [javac] ^
#16 8.509 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.509 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.509 [javac] ^
#16 8.509 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.509 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.509 [javac] ^
#16 8.509 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.509 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.509 [javac] ^
#16 8.509 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.509 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.509 [javac] ^
#16 8.509 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.509 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.509 [javac] ^
#16 8.509 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.509 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.509 [javac] ^
#16 8.509 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.509 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.509 [javac] ^
#16 8.509 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.509 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.509 [javac] ^
#16 8.509 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.510 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.510 [javac] ^
#16 8.610 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.610 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.610 [javac] ^
#16 8.710 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.710 [javac] BitWriter out = new BitWriter();
#16 8.710 [javac] ^
#16 8.710 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.710 [javac] BitWriter out = new BitWriter();
#16 8.710 [javac] ^
#16 9.711 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.711 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.711 [javac] ^
#16 9.711 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.711 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.711 [javac] ^
#16 9.812 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.812 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.812 [javac] ^
#16 9.812 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.812 [javac] protected ReflectedUniverse r;
#16 9.812 [javac] ^
#16 9.812 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.812 [javac] r = new ReflectedUniverse();
#16 9.812 [javac] ^
#16 9.912 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 9.912 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 9.912 [javac] ^
#16 9.912 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 9.912 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 9.912 [javac] ^
#16 9.912 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 9.912 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 9.912 [javac] ^
#16 9.912 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 9.912 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 9.912 [javac] ^
#16 9.912 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 9.912 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 9.912 [javac] ^
#16 9.912 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 9.913 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 9.913 [javac] ^
#16 9.913 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 9.913 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 9.913 [javac] ^
#16 9.913 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 9.913 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 9.913 [javac] ^
#16 9.913 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 9.913 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 9.913 [javac] ^
#16 10.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.01 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.01 [javac] ^
#16 10.01 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.01 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.01 [javac] 38 warnings
#16 10.08
#16 10.08 formats-bsd.jar:
#16 10.08 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.21 [resolver:install] Using default POM (ome:formats-bsd:8.2.0-SNAPSHOT)
#16 10.22 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.pom
#16 10.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.jar
#16 10.22 [resolver:install] Installing ome:formats-bsd:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 10.23 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.23
#16 10.23 deps-formats-gpl:
#16 10.23
#16 10.23 jar-formats-gpl:
#16 10.33 [echo] isSnapshot = true
#16 10.51
#16 10.51 init-title:
#16 10.51 [echo] ----------=========== formats-gpl ===========----------
#16 10.51
#16 10.51 init-timestamp:
#16 10.51
#16 10.51 init:
#16 10.51
#16 10.51 copy-resources:
#16 10.51 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.51 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.51
#16 10.51 compile:
#16 10.97 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.23 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.71 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.72 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 11.73 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 11.84 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.86 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.87 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.98 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 12.03 [resolver:resolve] Resolving artifacts
#16 12.04 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 12.04 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 12.08 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 12.08 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 12.42 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 12.42 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 12.44 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.65 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.65 [javac] import loci.formats.codec.BitWriter;
#16 13.65 [javac] ^
#16 13.65 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.65 [javac] import loci.formats.codec.BitWriter;
#16 13.65 [javac] ^
#16 15.35 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 15.35 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 15.35 [javac] ^
#16 15.35 [javac] cast to Object for a varargs call
#16 15.35 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 15.35 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.35 [javac] BitWriter bits = null;
#16 15.35 [javac] ^
#16 15.35 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.35 [javac] bits = new BitWriter(planes[index].length / 8);
#16 15.35 [javac] ^
#16 15.65 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 15.65 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 15.65 [javac] ^
#16 16.05 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.05 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.05 [javac] ^
#16 16.05 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.05 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.05 [javac] ^
#16 16.31 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 16.31 [javac] Variable variable = group.findVariable(variableName);
#16 16.31 [javac] ^
#16 16.31 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 16.31 [javac] Variable variable = group.findVariable(variableName);
#16 16.31 [javac] ^
#16 16.31 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 16.31 [javac] List<Attribute> attributes = variable.getAttributes();
#16 16.31 [javac] ^
#16 16.31 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.31 [javac] String groupName = group.getName();
#16 16.31 [javac] ^
#16 16.31 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 16.31 [javac] List<Attribute> attributes = group.getAttributes();
#16 16.31 [javac] ^
#16 16.31 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.31 [javac] String variableName = variable.getName();
#16 16.31 [javac] ^
#16 16.31 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 16.31 [javac] Group nextParent = parent.findGroup(token);
#16 16.31 [javac] ^
#16 16.31 [javac] Note: Some input files use unchecked or unsafe operations.
#16 16.31 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.31 [javac] 15 warnings
#16 16.31
#16 16.31 formats-gpl.jar:
#16 16.32 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 16.48 [resolver:install] Using default POM (ome:formats-gpl:8.2.0-SNAPSHOT)
#16 16.49 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.pom
#16 16.49 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.jar
#16 16.49 [resolver:install] Installing ome:formats-gpl:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 16.49 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 16.50
#16 16.50 deps-bio-formats-plugins:
#16 16.50
#16 16.50 jar-bio-formats-plugins:
#16 16.60 [echo] isSnapshot = true
#16 16.77
#16 16.77 init-title:
#16 16.77 [echo] ----------=========== bio-formats_plugins ===========----------
#16 16.77
#16 16.77 init-timestamp:
#16 16.77
#16 16.77 init:
#16 16.77
#16 16.77 copy-resources:
#16 16.78 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.78 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.78
#16 16.78 compile:
#16 17.03 [resolver:resolve] Resolving artifacts
#16 17.04 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.85 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.85 [javac] import loci.common.ReflectedUniverse;
#16 17.85 [javac] ^
#16 17.85 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.85 [javac] import loci.common.ReflectedUniverse;
#16 17.85 [javac] ^
#16 18.25 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 18.25 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 18.25 [javac] ^
#16 18.35 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.35 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.35 [javac] ^
#16 18.35 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.35 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.35 [javac] ^
#16 18.45 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.45 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.45 [javac] ^
#16 18.45 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.45 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.45 [javac] ^
#16 18.75 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 18.75 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.75 [javac] 7 warnings
#16 18.78
#16 18.78 bio-formats-plugins.jar:
#16 18.78 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 18.82 [resolver:install] Using default POM (ome:bio-formats_plugins:8.2.0-SNAPSHOT)
#16 18.82 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.pom
#16 18.88 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.jar
#16 18.88 [resolver:install] Installing ome:bio-formats_plugins:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 18.88 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 18.88
#16 18.88 deps-bio-formats-tools:
#16 18.88
#16 18.88 jar-bio-formats-tools:
#16 18.98 [echo] isSnapshot = true
#16 19.15
#16 19.15 init-title:
#16 19.15 [echo] ----------=========== bio-formats-tools ===========----------
#16 19.15
#16 19.15 init-timestamp:
#16 19.15
#16 19.15 init:
#16 19.15
#16 19.15 copy-resources:
#16 19.15 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.15
#16 19.15 compile:
#16 19.40 [resolver:resolve] Resolving artifacts
#16 19.41 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.42
#16 20.42 bio-formats-tools.jar:
#16 20.42 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 20.43 [resolver:install] Using default POM (ome:bio-formats-tools:8.2.0-SNAPSHOT)
#16 20.44 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.pom
#16 20.44 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.jar
#16 20.45 [resolver:install] Installing ome:bio-formats-tools:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 20.45 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 20.45
#16 20.45 deps-tests:
#16 20.45
#16 20.45 jar-tests:
#16 20.55 [echo] isSnapshot = true
#16 20.72
#16 20.72 init-title:
#16 20.72 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 20.72
#16 20.72 init-timestamp:
#16 20.72
#16 20.72 init:
#16 20.72
#16 20.72 copy-resources:
#16 20.72 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 20.72
#16 20.72 compile:
#16 21.02 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.10 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.60 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.62 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 22.25 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 22.68 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 22.71 [resolver:resolve] Resolving artifacts
#16 22.72 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.75 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.10 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.11 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.52 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.78 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 23.79 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 24.71 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.71 [javac] int index = unflattenedReader.getCoreIndex();
#16 24.71 [javac] ^
#16 24.71 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 24.71 [javac] reader.setCoreIndex(index);
#16 24.71 [javac] ^
#16 24.91 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2263: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.91 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.91 [javac] ^
#16 24.91 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2429: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.91 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.91 [javac] ^
#16 25.11 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.11 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 25.11 [javac] ^
#16 25.11 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.11 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 25.11 [javac] ^
#16 25.19 [javac] Note: Some input files use unchecked or unsafe operations.
#16 25.19 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 25.19 [javac] 6 warnings
#16 25.19
#16 25.19 tests.jar:
#16 25.19 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 25.21 [resolver:install] Using default POM (ome:test-suite:8.2.0-SNAPSHOT)
#16 25.21 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.pom
#16 25.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.jar
#16 25.22 [resolver:install] Installing ome:test-suite:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 25.22 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 25.22
#16 25.22 jars:
#16 25.22
#16 25.22 copy-jars:
#16 25.22
#16 25.22 deps-formats-api:
#16 25.27 [echo] isSnapshot = true
#16 25.32
#16 25.32 install-pom:
#16 25.54 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/pom-bio-formats-8.2.0-SNAPSHOT.pom
#16 25.54 [resolver:install] Installing ome:pom-bio-formats:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 25.54 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 25.54
#16 25.54 jar-formats-api:
#16 25.64 [echo] isSnapshot = true
#16 25.80
#16 25.80 init-title:
#16 25.80 [echo] ----------=========== formats-api ===========----------
#16 25.80
#16 25.80 init-timestamp:
#16 25.80
#16 25.80 init:
#16 25.80
#16 25.80 copy-resources:
#16 25.80
#16 25.80 compile:
#16 25.94 [resolver:resolve] Resolving artifacts
#16 25.95
#16 25.95 formats-api.jar:
#16 25.97 [resolver:install] Using default POM (ome:formats-api:8.2.0-SNAPSHOT)
#16 25.97 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.pom
#16 25.97 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.jar
#16 25.98 [resolver:install] Installing ome:formats-api:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 25.98 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 25.98
#16 25.98 deps-turbojpeg:
#16 25.98
#16 25.98 jar-turbojpeg:
#16 26.19 [echo] isSnapshot = true
#16 26.35
#16 26.35 init-title:
#16 26.35 [echo] ----------=========== turbojpeg ===========----------
#16 26.35
#16 26.35 init-timestamp:
#16 26.35
#16 26.35 init:
#16 26.35
#16 26.35 copy-resources:
#16 26.35
#16 26.35 compile:
#16 26.36 [resolver:resolve] Resolving artifacts
#16 26.36
#16 26.36 jar:
#16 26.37 [resolver:install] Using default POM (ome:turbojpeg:8.2.0-SNAPSHOT)
#16 26.38 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.pom
#16 26.38 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.jar
#16 26.38 [resolver:install] Installing ome:turbojpeg:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 26.38 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 26.39
#16 26.39 deps-formats-bsd:
#16 26.39
#16 26.39 jar-formats-bsd:
#16 26.48 [echo] isSnapshot = true
#16 26.63
#16 26.63 init-title:
#16 26.63 [echo] ----------=========== formats-bsd ===========----------
#16 26.63
#16 26.63 init-timestamp:
#16 26.63
#16 26.63 init:
#16 26.63
#16 26.63 copy-resources:
#16 26.64
#16 26.64 compile:
#16 26.82 [resolver:resolve] Resolving artifacts
#16 26.84
#16 26.84 formats-bsd.jar:
#16 26.87 [resolver:install] Using default POM (ome:formats-bsd:8.2.0-SNAPSHOT)
#16 26.88 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.pom
#16 26.88 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.jar
#16 26.88 [resolver:install] Installing ome:formats-bsd:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 26.88 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 26.88
#16 26.88 deps-formats-gpl:
#16 26.88
#16 26.88 jar-formats-gpl:
#16 26.98 [echo] isSnapshot = true
#16 27.15
#16 27.15 init-title:
#16 27.15 [echo] ----------=========== formats-gpl ===========----------
#16 27.15
#16 27.15 init-timestamp:
#16 27.15
#16 27.15 init:
#16 27.15
#16 27.15 copy-resources:
#16 27.16
#16 27.16 compile:
#16 27.40 [resolver:resolve] Resolving artifacts
#16 27.42
#16 27.42 formats-gpl.jar:
#16 27.46 [resolver:install] Using default POM (ome:formats-gpl:8.2.0-SNAPSHOT)
#16 27.46 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.pom
#16 27.46 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.jar
#16 27.47 [resolver:install] Installing ome:formats-gpl:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 27.47 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 27.47
#16 27.47 deps-bio-formats-plugins:
#16 27.47
#16 27.47 jar-bio-formats-plugins:
#16 27.56 [echo] isSnapshot = true
#16 27.73
#16 27.73 init-title:
#16 27.73 [echo] ----------=========== bio-formats_plugins ===========----------
#16 27.73
#16 27.73 init-timestamp:
#16 27.73
#16 27.73 init:
#16 27.73
#16 27.73 copy-resources:
#16 27.73
#16 27.73 compile:
#16 27.98 [resolver:resolve] Resolving artifacts
#16 28.00
#16 28.00 bio-formats-plugins.jar:
#16 28.01 [resolver:install] Using default POM (ome:bio-formats_plugins:8.2.0-SNAPSHOT)
#16 28.02 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.pom
#16 28.02 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.jar
#16 28.02 [resolver:install] Installing ome:bio-formats_plugins:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 28.02 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 28.02
#16 28.02 deps-bio-formats-tools:
#16 28.02
#16 28.02 jar-bio-formats-tools:
#16 28.12 [echo] isSnapshot = true
#16 28.29
#16 28.29 init-title:
#16 28.29 [echo] ----------=========== bio-formats-tools ===========----------
#16 28.29
#16 28.29 init-timestamp:
#16 28.29
#16 28.29 init:
#16 28.29
#16 28.29 copy-resources:
#16 28.29
#16 28.29 compile:
#16 28.56 [resolver:resolve] Resolving artifacts
#16 28.57
#16 28.57 bio-formats-tools.jar:
#16 28.58 [resolver:install] Using default POM (ome:bio-formats-tools:8.2.0-SNAPSHOT)
#16 28.58 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.pom
#16 28.59 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.jar
#16 28.59 [resolver:install] Installing ome:bio-formats-tools:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 28.59 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 28.59
#16 28.59 deps-tests:
#16 28.59
#16 28.59 jar-tests:
#16 28.69 [echo] isSnapshot = true
#16 28.87
#16 28.87 init-title:
#16 28.87 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 28.87
#16 28.87 init-timestamp:
#16 28.87
#16 28.87 init:
#16 28.87
#16 28.87 copy-resources:
#16 28.87
#16 28.87 compile:
#16 29.13 [resolver:resolve] Resolving artifacts
#16 29.15
#16 29.15 tests.jar:
#16 29.15 [resolver:install] Using default POM (ome:test-suite:8.2.0-SNAPSHOT)
#16 29.16 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.pom
#16 29.16 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/test-suite-8.2.0-SNAPSHOT.jar
#16 29.16 [resolver:install] Installing ome:test-suite:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 29.16 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 29.17
#16 29.17 jars:
#16 29.17
#16 29.17 tools:
#16 29.17 [echo] ----------=========== bioformats_package ===========----------
#16 29.26 [echo] isSnapshot = true
#16 29.48
#16 29.48 init-timestamp:
#16 29.48
#16 29.48 bundle:
#16 29.72 [resolver:resolve] Resolving artifacts
#16 29.74 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.2.0-SNAPSHOT/bio-formats_plugins-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.77 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.26-SNAPSHOT/ome-common-6.0.26-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.80 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.82 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.83 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.90 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.92 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.98 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.00 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.26 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.32 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.34 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.41 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.42 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.43 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.43 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.63 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.19 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.19 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.20 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.20 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.30 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.31 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.31 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.0-SNAPSHOT/ome-xml-6.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.38 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.0-SNAPSHOT/specification-6.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.45 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.2.0-SNAPSHOT/formats-api-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.47 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.1-SNAPSHOT/ome-codecs-1.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.48 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.64 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.2.0-SNAPSHOT/formats-bsd-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.73 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.2.0-SNAPSHOT/turbojpeg-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.78 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.79 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.83 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.86 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.39 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.42 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.46 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.54 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.65 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.67 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.70 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.70 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.96 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.04 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.11 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.2.0-SNAPSHOT/formats-gpl-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.22 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.24 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/metakit-5.8.9-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.24 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.38 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.39 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.93 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.94 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.07 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.12 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.13 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.15 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.21 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.24 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.67 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.69 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.70 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.71 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.2.0-SNAPSHOT/bio-formats-tools-8.2.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.72 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.75 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.19 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.31 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.75 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 43.44 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.30 [resolver:install] Using default POM (ome:bioformats_package:8.2.0-SNAPSHOT)
#16 44.30 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.2.0-SNAPSHOT/bioformats_package-8.2.0-SNAPSHOT.pom
#16 44.31 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.2.0-SNAPSHOT/bioformats_package-8.2.0-SNAPSHOT.jar
#16 44.35 [resolver:install] Installing ome:bioformats_package:8.2.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.2.0-SNAPSHOT/maven-metadata-local.xml
#16 44.36 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 44.36
#16 44.36 BUILD SUCCESSFUL
#16 44.36 Total time: 44 seconds
#16 DONE 44.6s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.2s
#18 exporting to image
#18 exporting layers
#18 exporting layers 4.0s done
#18 writing image sha256:8d202ccdca15812011932b543ea5f34d379a67002a46b07983bf58d8ebf15b0f done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 4.0s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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