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Full Log#14 440.4 Progress (4): 365/435 kB | 274/290 kB | 119/154 kB | 110/632 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/4.2.7/plexus-archiver-4.2.7.jar
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#14 440.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-io/3.2.0/plexus-io-3.2.0.jar
#14 440.4 Progress (3): 435 kB | 154 kB | 340/632 kB
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#14 440.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/3.0/maven-dependency-tree-3.0.jar
#14 440.4 Progress (3): 435 kB | 364/632 kB | 12/195 kB
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#14 440.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.3.0/plexus-utils-3.3.0.jar
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#14 440.4 Progress (4): 632 kB | 76 kB | 37 kB | 164/263 kB
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#14 440.4 Progress (4): 632 kB | 76 kB | 37 kB | 168/263 kB
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#14 440.4 Progress (3): 76 kB | 37 kB | 258/263 kB
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#14 440.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-core/1.0/doxia-core-1.0.jar
#14 440.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-io/3.2.0/plexus-io-3.2.0.jar (76 kB at 176 kB/s)
#14 440.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-velocity/1.1.7/plexus-velocity-1.1.7.jar
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#14 441.1 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.13.0/maven-scm-provider-gitexe-1.13.0.jar (72 kB at 675 kB/s)
#14 441.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-manager-plexus/1.13.0/maven-scm-manager-plexus-1.13.0.pom
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#14 441.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-managers/1.13.0/maven-scm-managers-1.13.0.pom
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#14 441.4 Downloading from central: https://repo.maven.apache.org/maven2/org/kathrynhuxtable/maven/wagon/wagon-gitsite/0.3.1/wagon-gitsite-0.3.1.pom
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#14 441.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/xbean/xbean/3.4/xbean-3.4.pom
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#14 441.7 Downloading from central: https://repo.maven.apache.org/maven2/commons-logging/commons-logging-api/1.1/commons-logging-api-1.1.pom
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#14 441.7 Downloading from central: https://repo.maven.apache.org/maven2/com/google/collections/google-collections/1.0/google-collections-1.0.pom
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#14 441.7 Downloading from central: https://repo.maven.apache.org/maven2/com/google/google/1/google-1.pom
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#14 441.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.3/maven-scm-provider-gitexe-1.3.pom
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#14 441.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers-git/1.3/maven-scm-providers-git-1.3.pom
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#14 441.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers/1.3/maven-scm-providers-1.3.pom
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#14 441.8 Downloading from central: https://repo.maven.apache.org/maven2/regexp/regexp/1.3/regexp-1.3.pom
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#14 441.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-git-commons/1.3/maven-scm-provider-git-commons-1.3.pom
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#14 441.9 Downloading from central: https://repo.maven.apache.org/maven2/org/kathrynhuxtable/maven/wagon/wagon-gitsite/0.3.1/wagon-gitsite-0.3.1.jar
#14 441.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-manager-plexus/1.3/maven-scm-manager-plexus-1.3.jar
#14 441.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-gitexe/1.3/maven-scm-provider-gitexe-1.3.jar
#14 441.9 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/1.5.8/plexus-utils-1.5.8.jar
#14 441.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-api/1.3/maven-scm-api-1.3.jar
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#14 441.9 Progress (4): 20 kB | 49 kB | 199/268 kB | 89 kB
Downloading from central: https://repo.maven.apache.org/maven2/regexp/regexp/1.3/regexp-1.3.jar
#14 441.9 Progress
#14 441.9 [output clipped, log limit 2MiB reached]
#14 556.5 SLF4J: No SLF4J providers were found.
#14 556.5 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 556.5 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 567.2s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.5s
#16 [12/13] RUN ant jars tools
#16 0.338 Buildfile: /bio-formats-build/bioformats/build.xml
#16 0.661 [echo] isSnapshot = true
#16 2.773
#16 2.773 copy-jars:
#16 2.773
#16 2.773 deps-formats-api:
#16 2.855 [echo] isSnapshot = true
#16 2.921
#16 2.921 install-pom:
#16 3.133 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 3.140 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 3.145 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 3.147
#16 3.147 jar-formats-api:
#16 3.271 [echo] isSnapshot = true
#16 3.453
#16 3.453 init-title:
#16 3.454 [echo] ----------=========== formats-api ===========----------
#16 3.454
#16 3.454 init-timestamp:
#16 3.458
#16 3.458 init:
#16 3.458
#16 3.458 copy-resources:
#16 3.459 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.473 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.476
#16 3.476 compile:
#16 3.661 [resolver:resolve] Resolving artifacts
#16 3.690 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.366 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.366 [javac] import loci.common.ReflectedUniverse;
#16 4.367 [javac] ^
#16 4.567 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.567 [javac] int currentIndex = r.getCoreIndex();
#16 4.567 [javac] ^
#16 4.567 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.567 [javac] r.setCoreIndex(coreIndex);
#16 4.567 [javac] ^
#16 4.567 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.567 [javac] r.setCoreIndex(currentIndex);
#16 4.567 [javac] ^
#16 4.768 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.768 [javac] public void setCoreIndex(int no) {
#16 4.768 [javac] ^
#16 4.768 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.768 [javac] public int getCoreIndex() {
#16 4.768 [javac] ^
#16 4.769 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.769 [javac] public int coreIndexToSeries(int index)
#16 4.769 [javac] ^
#16 4.769 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.769 [javac] public int seriesToCoreIndex(int series)
#16 4.769 [javac] ^
#16 4.769 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.769 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.769 [javac] ^
#16 4.769 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.770 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.770 [javac] ^
#16 4.770 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.770 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.770 [javac] ^
#16 4.770 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.770 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.770 [javac] ^
#16 4.770 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.770 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.771 [javac] ^
#16 4.871 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.871 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.871 [javac] ^
#16 4.871 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.871 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.871 [javac] ^
#16 4.972 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.972 [javac] public void setCoreIndex(int no) {
#16 4.972 [javac] ^
#16 4.972 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.972 [javac] public int getCoreIndex() {
#16 4.972 [javac] ^
#16 4.973 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.973 [javac] public int coreIndexToSeries(int index) {
#16 4.973 [javac] ^
#16 4.973 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.973 [javac] public int seriesToCoreIndex(int series) {
#16 4.973 [javac] ^
#16 4.973 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.974 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.974 [javac] ^
#16 4.974 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.974 [javac] return getReader().getCoreMetadataList();
#16 4.974 [javac] ^
#16 4.974 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.974 [javac] return getReader().getCoreIndex();
#16 4.974 [javac] ^
#16 4.974 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.974 [javac] getReader().setCoreIndex(no);
#16 4.974 [javac] ^
#16 4.974 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.975 [javac] return getReader().seriesToCoreIndex(series);
#16 4.975 [javac] ^
#16 4.975 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.975 [javac] return getReader().coreIndexToSeries(index);
#16 4.975 [javac] ^
#16 5.075 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.075 [javac] public void setCoreIndex(int no) {
#16 5.075 [javac] ^
#16 5.076 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.076 [javac] public int getCoreIndex() {
#16 5.076 [javac] ^
#16 5.076 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.076 [javac] public int coreIndexToSeries(int index) {
#16 5.076 [javac] ^
#16 5.076 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.076 [javac] public int seriesToCoreIndex(int series) {
#16 5.076 [javac] ^
#16 5.076 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.076 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.076 [javac] ^
#16 5.076 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.076 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 5.076 [javac] ^
#16 5.077 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.077 [javac] return reader.getCoreIndex();
#16 5.077 [javac] ^
#16 5.077 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.077 [javac] reader.setCoreIndex(no);
#16 5.077 [javac] ^
#16 5.077 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.077 [javac] return reader.seriesToCoreIndex(series);
#16 5.077 [javac] ^
#16 5.077 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.077 [javac] return reader.coreIndexToSeries(index);
#16 5.077 [javac] ^
#16 5.178 [javac] Note: Some input files use unchecked or unsafe operations.
#16 5.178 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 5.178 [javac] 35 warnings
#16 5.215
#16 5.215 formats-api.jar:
#16 5.216 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 5.242 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 5.277 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 5.281 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 5.327 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 5.328 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 5.331 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 5.332
#16 5.332 deps-turbojpeg:
#16 5.332
#16 5.332 jar-turbojpeg:
#16 5.444 [echo] isSnapshot = true
#16 5.615
#16 5.615 init-title:
#16 5.615 [echo] ----------=========== turbojpeg ===========----------
#16 5.615
#16 5.615 init-timestamp:
#16 5.615
#16 5.615 init:
#16 5.615
#16 5.615 copy-resources:
#16 5.616 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.617
#16 5.617 compile:
#16 5.628 [resolver:resolve] Resolving artifacts
#16 5.632 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.433
#16 6.433 jar:
#16 6.438 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.632 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 6.640 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 6.642 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 6.645 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 6.649 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.651
#16 6.651 deps-formats-bsd:
#16 6.651
#16 6.651 jar-formats-bsd:
#16 6.759 [echo] isSnapshot = true
#16 6.937
#16 6.937 init-title:
#16 6.937 [echo] ----------=========== formats-bsd ===========----------
#16 6.937
#16 6.937 init-timestamp:
#16 6.937
#16 6.937 init:
#16 6.937
#16 6.937 copy-resources:
#16 6.938 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.941 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.942
#16 6.942 compile:
#16 7.165 [resolver:resolve] Resolving artifacts
#16 7.198 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.207 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.207 [javac] import loci.common.ReflectedUniverse;
#16 8.207 [javac] ^
#16 8.608 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.608 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.608 [javac] ^
#16 8.608 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.608 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.608 [javac] ^
#16 8.608 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.608 [javac] int n = reader.getCoreMetadataList().size();
#16 8.608 [javac] ^
#16 8.608 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.608 [javac] reader.setCoreIndex(coreIndex);
#16 8.608 [javac] ^
#16 8.608 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.608 [javac] int n = reader.getCoreMetadataList().size();
#16 8.609 [javac] ^
#16 8.609 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.609 [javac] int n = reader.getCoreMetadataList().size();
#16 8.609 [javac] ^
#16 8.609 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.609 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.609 [javac] ^
#16 8.609 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.609 [javac] int n = reader.getCoreMetadataList().size();
#16 8.609 [javac] ^
#16 8.609 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.609 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.609 [javac] ^
#16 8.609 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.609 [javac] int n = reader.getCoreMetadataList().size();
#16 8.609 [javac] ^
#16 8.609 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.609 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.609 [javac] ^
#16 8.610 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.610 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.610 [javac] ^
#16 8.610 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.610 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.610 [javac] ^
#16 8.610 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.610 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.610 [javac] ^
#16 8.610 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.610 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.610 [javac] ^
#16 8.610 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.610 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.610 [javac] ^
#16 8.610 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.610 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.610 [javac] ^
#16 8.610 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.610 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.610 [javac] ^
#16 8.610 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.611 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.611 [javac] ^
#16 8.911 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.911 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.911 [javac] ^
#16 9.011 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.011 [javac] BitWriter out = new BitWriter();
#16 9.011 [javac] ^
#16 9.011 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.011 [javac] BitWriter out = new BitWriter();
#16 9.012 [javac] ^
#16 9.912 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.912 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.913 [javac] ^
#16 10.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 10.01 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 10.01 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.11 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.11 [javac] protected ReflectedUniverse r;
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.11 [javac] r = new ReflectedUniverse();
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 10.11 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 10.11 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 10.11 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 10.11 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 10.11 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 10.11 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 10.11 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 10.11 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 10.11 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 10.11 [javac] ^
#16 10.21 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.21 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.22 [javac] ^
#16 10.32 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.32 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.32 [javac] 38 warnings
#16 10.36
#16 10.36 formats-bsd.jar:
#16 10.36 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.50 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 10.50 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 10.50 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 10.51 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 10.51 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.51
#16 10.51 deps-formats-gpl:
#16 10.51
#16 10.51 jar-formats-gpl:
#16 10.61 [echo] isSnapshot = true
#16 10.79
#16 10.79 init-title:
#16 10.79 [echo] ----------=========== formats-gpl ===========----------
#16 10.79
#16 10.79 init-timestamp:
#16 10.79
#16 10.79 init:
#16 10.79
#16 10.79 copy-resources:
#16 10.80 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.80 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.80
#16 10.80 compile:
#16 11.26 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.52 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 12.01 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 12.02 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 12.03 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 12.15 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 12.17 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 12.18 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 12.30 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 12.36 [resolver:resolve] Resolving artifacts
#16 12.37 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 12.37 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 12.41 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 12.41 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 12.75 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 12.75 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 12.77 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.98 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.98 [javac] import loci.formats.codec.BitWriter;
#16 13.98 [javac] ^
#16 14.08 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.08 [javac] import loci.formats.codec.BitWriter;
#16 14.08 [javac] ^
#16 15.88 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 15.88 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 15.88 [javac] ^
#16 15.88 [javac] cast to Object for a varargs call
#16 15.88 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 15.88 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.88 [javac] BitWriter bits = null;
#16 15.88 [javac] ^
#16 15.88 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.88 [javac] bits = new BitWriter(planes[index].length / 8);
#16 15.88 [javac] ^
#16 16.18 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 16.18 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 16.18 [javac] ^
#16 16.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.48 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.48 [javac] ^
#16 16.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.48 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.48 [javac] ^
#16 16.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 16.77 [javac] Variable variable = group.findVariable(variableName);
#16 16.77 [javac] ^
#16 16.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 16.77 [javac] Variable variable = group.findVariable(variableName);
#16 16.77 [javac] ^
#16 16.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 16.77 [javac] List<Attribute> attributes = variable.getAttributes();
#16 16.77 [javac] ^
#16 16.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.77 [javac] String groupName = group.getName();
#16 16.77 [javac] ^
#16 16.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 16.77 [javac] List<Attribute> attributes = group.getAttributes();
#16 16.77 [javac] ^
#16 16.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.77 [javac] String variableName = variable.getName();
#16 16.77 [javac] ^
#16 16.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 16.77 [javac] Group nextParent = parent.findGroup(token);
#16 16.77 [javac] ^
#16 16.77 [javac] Note: Some input files use unchecked or unsafe operations.
#16 16.77 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.77 [javac] 15 warnings
#16 16.77
#16 16.77 formats-gpl.jar:
#16 16.78 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 16.94 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 16.95 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 16.95 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 16.96 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 16.96 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 16.96
#16 16.96 deps-bio-formats-plugins:
#16 16.96
#16 16.96 jar-bio-formats-plugins:
#16 17.07 [echo] isSnapshot = true
#16 17.24
#16 17.24 init-title:
#16 17.24 [echo] ----------=========== bio-formats_plugins ===========----------
#16 17.24
#16 17.24 init-timestamp:
#16 17.24
#16 17.24 init:
#16 17.24
#16 17.24 copy-resources:
#16 17.24 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.24 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.24
#16 17.24 compile:
#16 17.51 [resolver:resolve] Resolving artifacts
#16 17.53 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.33 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.33 [javac] import loci.common.ReflectedUniverse;
#16 18.33 [javac] ^
#16 18.33 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.33 [javac] import loci.common.ReflectedUniverse;
#16 18.33 [javac] ^
#16 18.83 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 18.83 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 18.83 [javac] ^
#16 18.93 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.93 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.93 [javac] ^
#16 18.93 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.93 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.93 [javac] ^
#16 19.03 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.03 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 19.03 [javac] ^
#16 19.03 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.03 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 19.03 [javac] ^
#16 19.33 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 19.33 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 19.33 [javac] 7 warnings
#16 19.33
#16 19.33 bio-formats-plugins.jar:
#16 19.34 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 19.37 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 19.37 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 19.42 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 19.42 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 19.43 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 19.43
#16 19.43 deps-bio-formats-tools:
#16 19.43
#16 19.43 jar-bio-formats-tools:
#16 19.53 [echo] isSnapshot = true
#16 19.70
#16 19.70 init-title:
#16 19.70 [echo] ----------=========== bio-formats-tools ===========----------
#16 19.70
#16 19.70 init-timestamp:
#16 19.70
#16 19.70 init:
#16 19.70
#16 19.70 copy-resources:
#16 19.70 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.70
#16 19.70 compile:
#16 19.95 [resolver:resolve] Resolving artifacts
#16 19.96 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.96
#16 20.96 bio-formats-tools.jar:
#16 20.97 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 20.97 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 20.98 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 20.99 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 20.99 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 20.99 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 21.00
#16 21.00 deps-tests:
#16 21.00
#16 21.00 jar-tests:
#16 21.10 [echo] isSnapshot = true
#16 21.27
#16 21.27 init-title:
#16 21.27 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 21.27
#16 21.27 init-timestamp:
#16 21.27
#16 21.27 init:
#16 21.27
#16 21.27 copy-resources:
#16 21.27 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.27
#16 21.27 compile:
#16 21.61 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.70 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 22.10 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 22.12 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 22.75 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 23.48 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 23.50 [resolver:resolve] Resolving artifacts
#16 23.51 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.55 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.90 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.91 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 24.31 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 24.61 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 24.61 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 25.53 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.53 [javac] int index = unflattenedReader.getCoreIndex();
#16 25.53 [javac] ^
#16 25.53 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 25.53 [javac] reader.setCoreIndex(index);
#16 25.53 [javac] ^
#16 25.83 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2341: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.83 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 25.83 [javac] ^
#16 25.83 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2507: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.83 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 25.83 [javac] ^
#16 26.02 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.02 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 26.02 [javac] ^
#16 26.02 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 26.02 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 26.02 [javac] ^
#16 26.02 [javac] Note: Some input files use unchecked or unsafe operations.
#16 26.02 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 26.02 [javac] 6 warnings
#16 26.02
#16 26.02 tests.jar:
#16 26.02 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 26.04 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 26.04 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 26.06 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 26.06 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 26.07 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.07
#16 26.07 jars:
#16 26.07
#16 26.07 copy-jars:
#16 26.07
#16 26.07 deps-formats-api:
#16 26.12 [echo] isSnapshot = true
#16 26.22
#16 26.22 install-pom:
#16 26.39 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 26.39 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 26.40 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 26.40
#16 26.40 jar-formats-api:
#16 26.50 [echo] isSnapshot = true
#16 26.67
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#16 26.67 [echo] ----------=========== formats-api ===========----------
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#16 26.82 [resolver:resolve] Resolving artifacts
#16 26.83
#16 26.83 formats-api.jar:
#16 26.84 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 26.85 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 26.85 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 26.85 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 26.85 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 26.85
#16 26.85 deps-turbojpeg:
#16 26.85
#16 26.85 jar-turbojpeg:
#16 27.07 [echo] isSnapshot = true
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#16 27.24 [echo] ----------=========== turbojpeg ===========----------
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#16 27.25 [resolver:resolve] Resolving artifacts
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#16 27.25 jar:
#16 27.26 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 27.27 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 27.27 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 27.27 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 27.28 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 27.28
#16 27.28 deps-formats-bsd:
#16 27.28
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#16 27.37 [echo] isSnapshot = true
#16 27.54
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#16 27.55 [echo] ----------=========== formats-bsd ===========----------
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#16 27.80 formats-bsd.jar:
#16 27.83 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 27.84 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 27.84 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 27.84 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 27.84 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 27.84
#16 27.84 deps-formats-gpl:
#16 27.84
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#16 28.12
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#16 28.12 [echo] ----------=========== formats-gpl ===========----------
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#16 28.44 formats-gpl.jar:
#16 28.47 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 28.48 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 28.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 28.48 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 28.49 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 28.49
#16 28.49 deps-bio-formats-plugins:
#16 28.49
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#16 28.58 [echo] isSnapshot = true
#16 28.75
#16 28.75 init-title:
#16 28.75 [echo] ----------=========== bio-formats_plugins ===========----------
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#16 29.02 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 29.03 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 29.03 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 29.03 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.03 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 29.04
#16 29.04 deps-bio-formats-tools:
#16 29.04
#16 29.04 jar-bio-formats-tools:
#16 29.14 [echo] isSnapshot = true
#16 29.30
#16 29.30 init-title:
#16 29.30 [echo] ----------=========== bio-formats-tools ===========----------
#16 29.30
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#16 29.30
#16 29.30 compile:
#16 29.53 [resolver:resolve] Resolving artifacts
#16 29.54
#16 29.54 bio-formats-tools.jar:
#16 29.55 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 29.55 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 29.55 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 29.55 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.56 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 29.56
#16 29.56 deps-tests:
#16 29.56
#16 29.56 jar-tests:
#16 29.66 [echo] isSnapshot = true
#16 29.82
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#16 29.82 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 29.82
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#16 29.82
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#16 30.10
#16 30.10 tests.jar:
#16 30.11 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 30.11 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 30.12 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 30.12 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 30.12 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 30.12
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#16 30.12
#16 30.12 tools:
#16 30.12 [echo] ----------=========== bioformats_package ===========----------
#16 30.22 [echo] isSnapshot = true
#16 30.44
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#16 30.44
#16 30.44 bundle:
#16 30.68 [resolver:resolve] Resolving artifacts
#16 30.69 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.73 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.1.1-SNAPSHOT/ome-common-6.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.75 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.78 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.79 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.85 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.88 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.94 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 31.21 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.27 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.29 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.36 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 31.38 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.39 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.58 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 32.14 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 32.26 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.1-SNAPSHOT/ome-xml-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 32.60 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.69 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 33.67 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.69 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 34.25 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 34.27 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 34.97 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.98 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.11 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.18 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.18 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.20 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.26 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.30 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.75 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.77 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.78 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.79 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.80 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.83 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.28 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.41 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.84 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 44.41 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.33 [resolver:install] Using default POM (ome:bioformats_package:8.4.0-SNAPSHOT)
#16 45.34 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.pom
#16 45.34 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.jar
#16 45.39 [resolver:install] Installing ome:bioformats_package:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 45.39 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 45.39
#16 45.39 BUILD SUCCESSFUL
#16 45.39 Total time: 45 seconds
#16 DONE 45.7s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 4.1s done
#18 writing image sha256:cc9b43bf113e4c4bd8c084499077d04c71e556b20180f73d885862066e31802d done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 4.1s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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