Console Output

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#14 600.3 Downloading from central: https://repo.maven.apache.org/maven2/commons-math/commons-math/1.2/commons-math-1.2.pom
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#14 600.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-parent/7/commons-parent-7.pom
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#14 600.3 Downloading from central: https://repo.maven.apache.org/maven2/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.pom
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Downloaded from central: https://repo.maven.apache.org/maven2/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.pom (19 kB at 676 kB/s)
#14 600.4 Downloading from central: https://repo.maven.apache.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#14 600.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar
#14 600.4 Downloading from central: https://repo.maven.apache.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#14 600.4 Downloading from central: https://repo.maven.apache.org/maven2/com/google/re2j/re2j/1.3/re2j-1.3.jar
#14 600.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar (42 kB at 663 kB/s)
#14 600.4 Progress (2): 116/780 kB | 113/121 kB
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Downloading from central: https://repo.maven.apache.org/maven2/commons-math/commons-math/1.2/commons-math-1.2.jar
#14 600.5 Progress (2): 124/780 kB | 117/121 kB
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Progress (3): 350/780 kB | 121 kB | 8.2/338 kB
                                              
Downloaded from central: https://repo.maven.apache.org/maven2/com/google/re2j/re2j/1.3/re2j-1.3.jar (121 kB at 1.6 MB/s)
#14 600.5 Progress (2): 354/780 kB | 8.2/338 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar
#14 600.5 Progress (2): 362/780 kB | 12/338 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/commons-math/commons-math/1.2/commons-math-1.2.jar (338 kB at 3.2 MB/s)
#14 600.5 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar (780 kB at 7.2 MB/s)
#14 600.5 Progress (1): 0.2/14 MB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar (14 MB at 20 MB/s)
#14 601.1 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#14 601.1 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (80 kB at 48 kB/s)
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (4.3 MB at 18 kB/s)
#14 843.6 [[1;34mINFO[m] 
#14 843.6 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mformats-gpl[0;1m ---[m
#14 843.6 [[1;34mINFO[m] 
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#14 843.6 [[1;34mINFO[m] 
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#14 843.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 843.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 843.6 [[1;34mINFO[m] Storing buildNumber: fcb2a6ae026d49b5882cf8181df0fa75ed7f11e6 at timestamp: 1756254527727
#14 843.6 [[1;33mWARNING[m] Cannot get the branch information from the git repository: 
#14 843.6 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 843.6 
#14 843.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 843.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 843.6 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 843.6 [[1;34mINFO[m] 
#14 843.6 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mformats-gpl[0;1m ---[m
#14 843.6 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 843.6 [[1;34mINFO[m] Copying 2 resources
#14 843.6 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/formats-gpl/lib
#14 843.6 [[1;34mINFO[m] Copying 0 resource
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#14 843.6 [[1;34mINFO[m] 
#14 843.6 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.14.0:compile[m [1m(default-compile)[m @ [36mformats-gpl[0;1m ---[m
#14 843.6 [[1;34mINFO[m] Recompiling the module because of [1mchanged dependency[m.
#14 843.6 [[1;34mINFO[m] Compiling 178 source files with javac [debug release 8] to target/classes
#14 845.9 [[1;33mWARNING[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:[1321,42] non-varargs call of varargs method with inexact argument type for last parameter;
#14 845.9   cast to java.lang.Object for a varargs call
#14 845.9   cast to java.lang.Object[] for a non-varargs call and to suppress this warning
#14 845.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Some input files use or override a deprecated API.
#14 845.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Recompile with -Xlint:deprecation for details.
#14 845.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Some input files use unchecked or unsafe operations.
#14 845.9 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Recompile with -Xlint:unchecked for details.
#14 845.9 [[1;34mINFO[m] 
#14 845.9 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mformats-gpl[0;1m ---[m
#14 845.9 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 845.9 [[1;34mINFO[m] Copying 24 resources
#14 845.9 [[1;34mINFO[m] 
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#14 845.9 [[1;34mINFO[m] Recompiling the module because of [1mchanged dependency[m.
#14 845.9 [[1;34mINFO[m] Compiling 23 source files with javac [debug release 8] to target/test-classes
#14 846.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java uses unchecked or unsafe operations.
#14 846.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: Recompile with -Xlint:unchecked for details.
#14 846.2 [[1;34mINFO[m] 
#14 846.2 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mformats-gpl[0;1m ---[m
#14 846.2 [[1;34mINFO[m] 
#14 846.2 [[1;34mINFO[m] -------------------------------------------------------
#14 846.2 [[1;34mINFO[m]  T E S T S
#14 846.2 [[1;34mINFO[m] -------------------------------------------------------
#14 846.3 [[1;34mINFO[m] Running [1mTestSuite[m
#14 847.4 2025-08-27 00:28:51,520 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@78aea4b9 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 847.4 2025-08-27 00:28:51,523 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@69c79f09 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 847.4 2025-08-27 00:28:51,595 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@48e64352 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 847.4 2025-08-27 00:28:51,596 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@7249dadf reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 847.5 2025-08-27 00:28:51,645 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@7048f722 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 847.5 2025-08-27 00:28:51,645 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@c074c0c reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 847.5 2025-08-27 00:28:51,689 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@3c1e3314 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 847.5 2025-08-27 00:28:51,689 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@26f143ed reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 847.6 2025-08-27 00:28:51,798 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@22d6cac2 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 847.6 2025-08-27 00:28:51,798 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@30cdae70 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 847.7 2025-08-27 00:28:51,837 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@28782602 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 847.7 2025-08-27 00:28:51,837 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@c96a4ea reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 847.7 2025-08-27 00:28:51,876 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@6622a690 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 847.7 2025-08-27 00:28:51,876 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@6b9c69a9 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 847.8 2025-08-27 00:28:51,913 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.Laser@5d05ef57 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 847.8 2025-08-27 00:28:51,913 [main] WARN  ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@213deac2 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 848.0 [[1;34mINFO[m] [1;32mTests run: [0;1;32m99[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.713 s - in [1mTestSuite[m
#14 848.4 [[1;34mINFO[m] 
#14 848.4 [[1;34mINFO[m] Results:
#14 848.4 [[1;34mINFO[m] 
#14 848.4 [[1;34mINFO[m] [1;32mTests run: 99, Failures: 0, Errors: 0, Skipped: 0[m
#14 848.4 [[1;34mINFO[m] 
#14 848.4 [[1;34mINFO[m] 
#14 848.4 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-mdb-test)[m @ [36mformats-gpl[0;1m ---[m
#14 848.4 [[1;34mINFO[m] 
#14 848.4 [[1;34mINFO[m] -------------------------------------------------------
#14 848.4 [[1;34mINFO[m]  T E S T S
#14 848.4 [[1;34mINFO[m] -------------------------------------------------------
#14 848.5 [[1;34mINFO[m] Running [1mTestSuite[m
#14 849.0 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.404 s - in [1mTestSuite[m
#14 849.3 [[1;34mINFO[m] 
#14 849.3 [[1;34mINFO[m] Results:
#14 849.3 [[1;34mINFO[m] 
#14 849.3 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 849.3 [[1;34mINFO[m] 
#14 849.3 [[1;34mINFO[m] 
#14 849.3 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-poi-test)[m @ [36mformats-gpl[0;1m ---[m
#14 849.3 [[1;34mINFO[m] 
#14 849.3 [[1;34mINFO[m] -------------------------------------------------------
#14 849.3 [[1;34mINFO[m]  T E S T S
#14 849.3 [[1;34mINFO[m] -------------------------------------------------------
#14 849.4 [[1;34mINFO[m] Running [1mTestSuite[m
#14 849.9 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.415 s - in [1mTestSuite[m
#14 850.2 [[1;34mINFO[m] 
#14 850.2 [[1;34mINFO[m] Results:
#14 850.2 [[1;34mINFO[m] 
#14 850.2 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 850.2 [[1;34mINFO[m] 
#14 850.2 [[1;34mINFO[m] 
#14 850.2 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-netcdf-test)[m @ [36mformats-gpl[0;1m ---[m
#14 850.2 [[1;34mINFO[m] 
#14 850.2 [[1;34mINFO[m] -------------------------------------------------------
#14 850.2 [[1;34mINFO[m]  T E S T S
#14 850.2 [[1;34mINFO[m] -------------------------------------------------------
#14 850.3 [[1;34mINFO[m] Running [1mTestSuite[m
#14 850.7 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.408 s - in [1mTestSuite[m
#14 851.1 [[1;34mINFO[m] 
#14 851.1 [[1;34mINFO[m] Results:
#14 851.1 [[1;34mINFO[m] 
#14 851.1 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 851.1 [[1;34mINFO[m] 
#14 851.1 [[1;34mINFO[m] 
#14 851.1 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mformats-gpl[0;1m ---[m
#14 851.1 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT.jar
#14 851.2 [[1;34mINFO[m] 
#14 851.2 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m >>>[m
#14 851.2 [[1;34mINFO[m] 
#14 851.2 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mformats-gpl[0;1m ---[m
#14 851.2 [[1;34mINFO[m] 
#14 851.2 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 851.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 851.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 851.2 [[1;34mINFO[m] Storing buildNumber: fcb2a6ae026d49b5882cf8181df0fa75ed7f11e6 at timestamp: 1756254535318
#14 851.2 [[1;33mWARNING[m] Cannot get the branch information from the git repository: 
#14 851.2 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 851.2 
#14 851.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 851.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 851.2 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 851.2 [[1;34mINFO[m] 
#14 851.2 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m <<<[m
#14 851.2 [[1;34mINFO[m] 
#14 851.2 [[1;34mINFO[m] 
#14 851.2 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 851.2 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT-sources.jar
#14 851.2 [[1;34mINFO[m] 
#14 851.2 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 851.3 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT-tests.jar
#14 851.3 [[1;34mINFO[m] 
#14 851.3 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mformats-gpl[0;1m ---[m
#14 851.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#14 851.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#14 851.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT-sources.jar
#14 851.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT-tests.jar
#14 851.3 [[1;34mINFO[m] 
#14 851.3 [[1;34mINFO[m] [1m----------------------< [0;36mome:bio-formats_plugins[0;1m >-----------------------[m
#14 851.3 [[1;34mINFO[m] [1mBuilding Bio-Formats Plugins for ImageJ 8.4.0-SNAPSHOT           [17/24][m
#14 851.3 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 851.3 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom
#14 851.3 Progress (1): 4.1/7.9 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom (7.9 kB at 293 kB/s)
#14 851.3 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar (2.5 MB at 20 MB/s)
#14 851.5 [[1;34mINFO[m] 
#14 851.5 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 851.5 [[1;34mINFO[m] 
#14 851.5 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 851.5 [[1;34mINFO[m] 
#14 851.5 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 851.5 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 851.5 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 851.5 [[1;34mINFO[m] Storing buildNumber: fcb2a6ae026d49b5882cf8181df0fa75ed7f11e6 at timestamp: 1756254535610
#14 851.5 [[1;33mWARNING[m] Cannot get the branch information from the git repository: 
#14 851.5 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 851.5 
#14 851.5 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 851.5 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 851.5 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 851.5 [[1;34mINFO[m] 
#14 851.5 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 851.5 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 851.5 [[1;34mINFO[m] Copying 3 resources
#14 851.5 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-plugins/lib
#14 851.5 [[1;34mINFO[m] Copying 0 resource
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#14 851.5 [[1;34mINFO[m] 
#14 851.5 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.14.0:compile[m [1m(default-compile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 851.5 [[1;34mINFO[m] Recompiling the module because of [1mchanged dependency[m.
#14 851.5 [[1;34mINFO[m] Compiling 70 source files with javac [debug release 8] to target/classes
#14 852.0 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Some input files use or override a deprecated API.
#14 852.0 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Recompile with -Xlint:deprecation for details.
#14 852.0 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#14 852.0 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: Recompile with -Xlint:unchecked for details.
#14 852.0 [[1;34mINFO[m] 
#14 852.0 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 852.0 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 852.0 [[1;34mINFO[m] Copying 1 resource
#14 852.0 [[1;34mINFO[m] 
#14 852.0 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.14.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 852.0 [[1;34mINFO[m] Recompiling the module because of [1mchanged dependency[m.
#14 852.0 [[1;34mINFO[m] Compiling 3 source files with javac [debug release 8] to target/test-classes
#14 852.2 [[1;34mINFO[m] 
#14 852.2 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 852.2 [[1;34mINFO[m] 
#14 852.2 [[1;34mINFO[m] -------------------------------------------------------
#14 852.2 [[1;34mINFO[m]  T E S T S
#14 852.2 [[1;34mINFO[m] -------------------------------------------------------
#14 852.4 [[1;34mINFO[m] Running [1mTestSuite[m
#14 853.7 Warning: Data has too many channels for Colorized color mode
#14 853.8 Warning: Data has too many channels for Colorized color mode
#14 853.8 Warning: Data has too many channels for Colorized color mode
#14 853.9 Warning: Data has too many channels for Colorized color mode
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#14 853.9 Warning: Data has too many channels for Colorized color mode
#14 854.0 Warning: Data has too many channels for Colorized color mode
#14 854.0 Warning: Data has too many channels for Colorized color mode
#14 854.0 Warning: Data has too many channels for Composite color mode
#14 854.1 Warning: Data has too many channels for Composite color mode
#14 854.4 Warning: Data has too many channels for Composite color mode
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#14 855.2 Warning: Data has too many channels for Composite color mode
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#14 855.3 Warning: Data has too many channels for Composite color mode
#14 855.3 Warning: Data has too many channels for Composite color mode
#14 855.3 Warning: Data has too many channels for Composite color mode
#14 855.3 Warning: Data has too many channels for Composite color mode
#14 855.3 Warning: Data has too many channels for Composite color mode
#14 855.3 Warning: Data has too many channels for Composite color mode
#14 855.4 Warning: Data has too many channels for Composite color mode
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#14 855.4 Warning: Data has too many channels for Composite color mode
#14 855.4 Warning: Data has too many channels for Composite color mode
#14 855.7 Warning: Data has too many channels for Composite color mode
#14 855.7 Warning: Data has too many channels for Composite color mode
#14 855.7 Warning: Data has too many channels for Composite color mode
#14 855.7 Warning: Data has too many channels for Composite color mode
#14 855.8 Warning: Data has too many channels for Composite color mode
#14 855.8 Warning: Data has too many channels for Composite color mode
#14 855.8 Warning: Data has too many channels for Composite color mode
#14 855.8 Warning: Data has too many channels for Composite color mode
#14 855.8 Warning: Data has too many channels for Composite color mode
#14 855.8 Warning: Data has too many channels for Composite color mode
#14 855.8 Warning: Data has too many channels for Composite color mode
#14 855.8 Warning: Data has too many channels for Composite color mode
#14 855.8 Warning: Data has too many channels for Composite color mode
#14 855.8 Warning: Data has too many channels for Composite color mode
#14 855.9 Warning: Data has too many channels for Composite color mode
#14 855.9 Warning: Data has too many channels for Composite color mode
#14 855.9 Warning: Data has too many channels for Custom color mode
#14 855.9 Warning: Data has too many channels for Custom color mode
#14 855.9 Warning: Data has too many channels for Custom color mode
#14 855.9 Warning: Data has too many channels for Custom color mode
#14 856.0 Warning: Data has too many channels for Custom color mode
#14 856.0 Warning: Data has too many channels for Custom color mode
#14 856.0 Warning: Data has too many channels for Custom color mode
#14 856.0 Warning: Data has too many channels for Custom color mode
#14 856.1 Warning: Data has too many channels for Default color mode
#14 856.1 Warning: Data has too many channels for Default color mode
#14 856.1 Warning: Data has too many channels for Default color mode
#14 856.1 Warning: Data has too many channels for Default color mode
#14 856.1 Warning: Data has too many channels for Default color mode
#14 856.2 Warning: Data has too many channels for Default color mode
#14 856.2 Warning: Data has too many channels for Default color mode
#14 856.2 Warning: Data has too many channels for Default color mode
#14 856.2 Warning: Data has too many channels for Default color mode
#14 856.3 Warning: Data has too many channels for Default color mode
#14 856.3 Warning: Data has too many channels for Default color mode
#14 856.3 Warning: Data has too many channels for Default color mode
#14 856.3 Warning: Data has too many channels for Default color mode
#14 856.3 Warning: Data has too many channels for Default color mode
#14 856.4 Warning: Data has too many channels for Default color mode
#14 856.4 Warning: Data has too many channels for Default color mode
#14 856.4 Warning: Data has too many channels for Grayscale color mode
#14 856.4 Warning: Data has too many channels for Grayscale color mode
#14 856.5 Warning: Data has too many channels for Grayscale color mode
#14 856.5 Warning: Data has too many channels for Grayscale color mode
#14 856.5 Warning: Data has too many channels for Grayscale color mode
#14 856.5 Warning: Data has too many channels for Grayscale color mode
#14 856.6 Warning: Data has too many channels for Grayscale color mode
#14 856.6 Warning: Data has too many channels for Grayscale color mode
#14 856.6 Warning: Data has too many channels for Colorized color mode
#14 856.6 Warning: Data has too many channels for Colorized color mode
#14 856.7 Warning: Data has too many channels for Colorized color mode
#14 857.3 Warning: Data has too many channels for Default color mode
#14 857.5 [[1;34mINFO[m] [1;32mTests run: [0;1;32m30[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.083 s - in [1mTestSuite[m
#14 857.8 [[1;34mINFO[m] 
#14 857.8 [[1;34mINFO[m] Results:
#14 857.8 [[1;34mINFO[m] 
#14 857.8 [[1;34mINFO[m] [1;32mTests run: 30, Failures: 0, Errors: 0, Skipped: 0[m
#14 857.8 [[1;34mINFO[m] 
#14 857.8 [[1;34mINFO[m] 
#14 857.8 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 857.8 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#14 857.8 [[1;34mINFO[m] 
#14 857.8 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m >>>[m
#14 857.8 [[1;34mINFO[m] 
#14 857.8 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 857.8 [[1;34mINFO[m] 
#14 857.8 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 857.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 857.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 857.8 [[1;34mINFO[m] Storing buildNumber: fcb2a6ae026d49b5882cf8181df0fa75ed7f11e6 at timestamp: 1756254541987
#14 857.8 [[1;33mWARNING[m] Cannot get the branch information from the git repository: 
#14 857.8 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 857.8 
#14 857.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 857.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 857.8 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 857.8 [[1;34mINFO[m] 
#14 857.8 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m <<<[m
#14 857.8 [[1;34mINFO[m] 
#14 857.8 [[1;34mINFO[m] 
#14 857.8 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 857.9 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.4.0-SNAPSHOT-sources.jar
#14 857.9 [[1;34mINFO[m] 
#14 857.9 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 857.9 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.4.0-SNAPSHOT-tests.jar
#14 857.9 [[1;34mINFO[m] 
#14 857.9 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 857.9 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.4.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#14 857.9 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#14 857.9 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.4.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT-sources.jar
#14 857.9 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.4.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT-tests.jar
#14 857.9 [[1;34mINFO[m] 
#14 857.9 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bio-formats-tools[0;1m >------------------------[m
#14 857.9 [[1;34mINFO[m] [1mBuilding Bio-Formats command line tools 8.4.0-SNAPSHOT           [18/24][m
#14 857.9 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 857.9 [[1;34mINFO[m] 
#14 857.9 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats-tools[0;1m ---[m
#14 857.9 [[1;34mINFO[m] 
#14 857.9 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 857.9 [[1;34mINFO[m] 
#14 857.9 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 857.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 857.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 857.9 [[1;34mINFO[m] Storing buildNumber: fcb2a6ae026d49b5882cf8181df0fa75ed7f11e6 at timestamp: 1756254542070
#14 857.9 [[1;33mWARNING[m] Cannot get the branch information from the git repository: 
#14 857.9 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 857.9 
#14 857.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 857.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 857.9 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 857.9 [[1;34mINFO[m] 
#14 857.9 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 857.9 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 857.9 [[1;34mINFO[m] Copying 0 resource
#14 857.9 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-tools/lib
#14 857.9 [[1;34mINFO[m] Copying 0 resource
#14 857.9 [[1;34mINFO[m] Copying 0 resource
#14 857.9 [[1;34mINFO[m] 
#14 857.9 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.14.0:compile[m [1m(default-compile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 857.9 [[1;34mINFO[m] Recompiling the module because of [1mchanged dependency[m.
#14 857.9 [[1;34mINFO[m] Compiling 10 source files with javac [debug release 8] to target/classes
#14 858.1 [[1;34mINFO[m] 
#14 858.1 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 858.1 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 858.1 [[1;34mINFO[m] Copying 1 resource
#14 858.1 [[1;34mINFO[m] 
#14 858.1 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.14.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 858.1 [[1;34mINFO[m] Recompiling the module because of [1mchanged dependency[m.
#14 858.1 [[1;34mINFO[m] Compiling 1 source file with javac [debug release 8] to target/test-classes
#14 858.3 [[1;34mINFO[m] 
#14 858.3 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats-tools[0;1m ---[m
#14 858.3 [[1;34mINFO[m] 
#14 858.3 [[1;34mINFO[m] -------------------------------------------------------
#14 858.3 [[1;34mINFO[m]  T E S T S
#14 858.3 [[1;34mINFO[m] -------------------------------------------------------
#14 858.4 [[1;34mINFO[m] Running loci.formats.tools.[1mImageConverterTest[m
#14 945.7 [[1;34mINFO[m] [1;32mTests run: [0;1;32m55[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 87.222 s - in loci.formats.tools.[1mImageConverterTest[m
#14 946.0 [[1;34mINFO[m] 
#14 946.0 [[1;34mINFO[m] Results:
#14 946.0 [[1;34mINFO[m] 
#14 946.0 [[1;34mINFO[m] [1;32mTests run: 55, Failures: 0, Errors: 0, Skipped: 0[m
#14 946.0 [[1;34mINFO[m] 
#14 946.0 [[1;34mINFO[m] 
#14 946.0 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats-tools[0;1m ---[m
#14 946.0 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.4.0-SNAPSHOT.jar
#14 946.0 [[1;34mINFO[m] 
#14 946.0 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m >>>[m
#14 946.0 [[1;34mINFO[m] 
#14 946.0 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 946.0 [[1;34mINFO[m] 
#14 946.0 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 946.0 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 946.0 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 946.0 [[1;34mINFO[m] Storing buildNumber: fcb2a6ae026d49b5882cf8181df0fa75ed7f11e6 at timestamp: 1756254630189
#14 946.0 [[1;33mWARNING[m] Cannot get the branch information from the git repository: 
#14 946.0 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 946.0 
#14 946.0 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 946.0 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 946.0 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 946.0 [[1;34mINFO[m] 
#14 946.0 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m <<<[m
#14 946.0 [[1;34mINFO[m] 
#14 946.0 [[1;34mINFO[m] 
#14 946.0 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 946.1 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.4.0-SNAPSHOT-sources.jar
#14 946.1 [[1;34mINFO[m] 
#14 946.1 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 946.1 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.4.0-SNAPSHOT-tests.jar
#14 946.1 [[1;34mINFO[m] 
#14 946.1 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats-tools[0;1m ---[m
#14 946.1 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.4.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#14 946.1 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#14 946.1 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.4.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT-sources.jar
#14 946.1 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.4.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT-tests.jar
#14 946.1 [[1;34mINFO[m] 
#14 946.1 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bioformats_package[0;1m >-----------------------[m
#14 946.1 [[1;34mINFO[m] [1mBuilding bioformats_package bundle 8.4.0-SNAPSHOT                [19/24][m
#14 946.1 [[1;34mINFO[m] [1m--------------------------------[ pom ]---------------------------------[m
#14 946.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-assembly-plugin/3.1.0/maven-assembly-plugin-3.1.0.pom
#14 946.1 Progress (1): 2.8/16 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-assembly-plugin/3.1.0/maven-assembly-plugin-3.1.0.pom (16 kB at 196 kB/s)
#14 946.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-assembly-plugin/3.1.0/maven-assembly-plugin-3.1.0.jar
#14 946.2 Progress (1): 2.8/241 kB
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#14 946.2 [output clipped, log limit 2MiB reached]
#14 1072.1 SLF4J: No SLF4J providers were found.
#14 1072.1 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 1072.1 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 1079.3s

#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s

#16 [12/13] RUN ant jars tools
#16 0.806 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.564      [echo] isSnapshot = true
#16 1.671 
#16 1.671 copy-jars:
#16 1.671 
#16 1.671 deps-formats-api:
#16 1.753      [echo] isSnapshot = true
#16 1.813 
#16 1.813 install-pom:
#16 1.984 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 2.133 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 2.137 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 2.139 
#16 2.139 jar-formats-api:
#16 2.261      [echo] isSnapshot = true
#16 2.408 
#16 2.408 init-title:
#16 2.409      [echo] ----------=========== formats-api ===========----------
#16 2.409 
#16 2.409 init-timestamp:
#16 2.415 
#16 2.415 init:
#16 2.415 
#16 2.415 copy-resources:
#16 2.416     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.429      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.432 
#16 2.432 compile:
#16 2.611 [resolver:resolve] Resolving artifacts
#16 2.637     [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.885     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 3.486     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.486     [javac] import loci.common.ReflectedUniverse;
#16 3.486     [javac]                   ^
#16 3.687     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.687     [javac]     int currentIndex = r.getCoreIndex();
#16 3.687     [javac]                         ^
#16 3.687     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.687     [javac]     r.setCoreIndex(coreIndex);
#16 3.687     [javac]      ^
#16 3.787     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.787     [javac]     r.setCoreIndex(currentIndex);
#16 3.787     [javac]      ^
#16 3.888     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.888     [javac]   public void setCoreIndex(int no) {
#16 3.888     [javac]               ^
#16 3.888     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.888     [javac]   public int getCoreIndex() {
#16 3.888     [javac]              ^
#16 3.888     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.888     [javac]   public int coreIndexToSeries(int index)
#16 3.888     [javac]              ^
#16 3.888     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.888     [javac]   public int seriesToCoreIndex(int series)
#16 3.888     [javac]              ^
#16 3.888     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.888     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 3.888     [javac]                             ^
#16 3.989     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.989     [javac]     if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 3.989     [javac]                                              ^
#16 3.989     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.989     [javac]     if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 3.989     [javac]                                              ^
#16 3.989     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.989     [javac]       core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 3.989     [javac]                                                      ^
#16 3.989     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.989     [javac]       core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 3.989     [javac]                                                      ^
#16 4.090     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.090     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 4.090     [javac]     ^
#16 4.090     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.090     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 4.090     [javac]                               ^
#16 4.190     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.190     [javac]   public void setCoreIndex(int no) {
#16 4.190     [javac]               ^
#16 4.190     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.190     [javac]   public int getCoreIndex() {
#16 4.190     [javac]              ^
#16 4.190     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.190     [javac]   public int coreIndexToSeries(int index) {
#16 4.191     [javac]              ^
#16 4.191     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.191     [javac]   public int seriesToCoreIndex(int series) {
#16 4.191     [javac]              ^
#16 4.191     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.191     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 4.191     [javac]                             ^
#16 4.191     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.191     [javac]     return getReader().getCoreMetadataList();
#16 4.191     [javac]                       ^
#16 4.191     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.191     [javac]     return getReader().getCoreIndex();
#16 4.191     [javac]                       ^
#16 4.191     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.191     [javac]     getReader().setCoreIndex(no);
#16 4.192     [javac]                ^
#16 4.192     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.192     [javac]     return getReader().seriesToCoreIndex(series);
#16 4.192     [javac]                       ^
#16 4.192     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.192     [javac]     return getReader().coreIndexToSeries(index);
#16 4.192     [javac]                       ^
#16 4.293     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.293     [javac]   public void setCoreIndex(int no) {
#16 4.293     [javac]               ^
#16 4.293     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.293     [javac]   public int getCoreIndex() {
#16 4.293     [javac]              ^
#16 4.293     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.293     [javac]   public int coreIndexToSeries(int index) {
#16 4.293     [javac]              ^
#16 4.293     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.293     [javac]   public int seriesToCoreIndex(int series) {
#16 4.293     [javac]              ^
#16 4.293     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.293     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 4.293     [javac]                             ^
#16 4.293     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.293     [javac]     List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.293     [javac]                                        ^
#16 4.293     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.293     [javac]     return reader.getCoreIndex();
#16 4.294     [javac]                  ^
#16 4.294     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.294     [javac]     reader.setCoreIndex(no);
#16 4.294     [javac]           ^
#16 4.294     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.294     [javac]     return reader.seriesToCoreIndex(series);
#16 4.294     [javac]                  ^
#16 4.294     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.294     [javac]     return reader.coreIndexToSeries(index);
#16 4.294     [javac]                  ^
#16 4.465     [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.465     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.465     [javac] 36 warnings
#16 4.466 
#16 4.466 formats-api.jar:
#16 4.466     [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.489       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.523 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 4.526 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 4.533 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 4.535 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 4.537 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.537 
#16 4.537 deps-turbojpeg:
#16 4.537 
#16 4.537 jar-turbojpeg:
#16 4.636      [echo] isSnapshot = true
#16 4.797 
#16 4.797 init-title:
#16 4.797      [echo] ----------=========== turbojpeg ===========----------
#16 4.797 
#16 4.797 init-timestamp:
#16 4.798 
#16 4.798 init:
#16 4.798 
#16 4.798 copy-resources:
#16 4.798     [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.800 
#16 4.800 compile:
#16 4.810 [resolver:resolve] Resolving artifacts
#16 4.814     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.017     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.618     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 5.618     [javac]   protected void finalize() throws Throwable {
#16 5.618     [javac]                  ^
#16 5.618     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 5.618     [javac]       super.finalize();
#16 5.618     [javac]            ^
#16 5.670     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 5.670     [javac]   protected void finalize() throws Throwable {
#16 5.670     [javac]                  ^
#16 5.670     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 5.670     [javac]       super.finalize();
#16 5.670     [javac]            ^
#16 5.670     [javac] 5 warnings
#16 5.671 
#16 5.671 jar:
#16 5.675       [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 5.864 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 5.872 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 5.875 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 5.878 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 5.881 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 5.882 
#16 5.882 deps-formats-bsd:
#16 5.882 
#16 5.882 jar-formats-bsd:
#16 5.997      [echo] isSnapshot = true
#16 6.144 
#16 6.144 init-title:
#16 6.144      [echo] ----------=========== formats-bsd ===========----------
#16 6.144 
#16 6.144 init-timestamp:
#16 6.144 
#16 6.144 init:
#16 6.144 
#16 6.144 copy-resources:
#16 6.144     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.148      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.148 
#16 6.148 compile:
#16 6.365 [resolver:resolve] Resolving artifacts
#16 6.391     [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.600     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.801     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.801     [javac] import loci.common.ReflectedUniverse;
#16 7.801     [javac]                   ^
#16 8.101     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.101     [javac]       core.size() != reader.getCoreMetadataList().size())
#16 8.101     [javac]                            ^
#16 8.101     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.101     [javac]       List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.101     [javac]                                          ^
#16 8.202     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.202     [javac]     int n = reader.getCoreMetadataList().size();
#16 8.202     [javac]                   ^
#16 8.202     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.202     [javac]     reader.setCoreIndex(coreIndex);
#16 8.202     [javac]           ^
#16 8.202     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.202     [javac]     int n = reader.getCoreMetadataList().size();
#16 8.202     [javac]                   ^
#16 8.202     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.202     [javac]     int n = reader.getCoreMetadataList().size();
#16 8.202     [javac]                   ^
#16 8.202     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.202     [javac]     if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.202     [javac]                                         ^
#16 8.202     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.202     [javac]     int n = reader.getCoreMetadataList().size();
#16 8.202     [javac]                   ^
#16 8.202     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.202     [javac]     if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.202     [javac]                                         ^
#16 8.202     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.202     [javac]     int n = reader.getCoreMetadataList().size();
#16 8.202     [javac]                   ^
#16 8.202     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.202     [javac]     if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.202     [javac]                                  ^
#16 8.203     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.203     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.203     [javac]                  ^
#16 8.203     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.203     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.203     [javac]                                              ^
#16 8.203     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.203     [javac]     return noStitch ? reader.getCoreMetadataList() : core;
#16 8.203     [javac]                             ^
#16 8.203     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.203     [javac]     if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.203     [javac]               ^
#16 8.203     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.203     [javac]       seriesCount = reader.getCoreMetadataList().size();
#16 8.203     [javac]                           ^
#16 8.203     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.203     [javac]       if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.203     [javac]                 ^
#16 8.203     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.203     [javac]     if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.203     [javac]               ^
#16 8.203     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.203     [javac]       r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.203     [javac]                            ^
#16 8.303     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.303     [javac]     int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.303     [javac]                               ^
#16 8.504     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.504     [javac]     BitWriter out = new BitWriter();
#16 8.504     [javac]     ^
#16 8.504     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.504     [javac]     BitWriter out = new BitWriter();
#16 8.504     [javac]                         ^
#16 8.604     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.604     [javac]       return new Double(v);
#16 8.604     [javac]              ^
#16 9.305     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2129: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.305     [javac]     return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 9.305     [javac]                                         ^
#16 9.305     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2136: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.305     [javac]     return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 9.305     [javac]                                         ^
#16 9.305     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2143: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.305     [javac]     return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 9.305     [javac]                                         ^
#16 9.405     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.405     [javac]                channelNames.put(new Integer(channelNames.size()), value);
#16 9.405     [javac]                                 ^
#16 9.606     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.606     [javac]       OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.606     [javac]                                                                    ^
#16 9.706     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.706     [javac]     StreamTokenizer st = new StreamTokenizer(in);
#16 9.706     [javac]                          ^
#16 9.707     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.707     [javac] 									store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#16 9.707     [javac] 									                                    ^
#16 9.807     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.807     [javac]     core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.807     [javac]                                                    ^
#16 9.807     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.807     [javac]   protected ReflectedUniverse r;
#16 9.807     [javac]             ^
#16 9.807     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.807     [javac]       r = new ReflectedUniverse();
#16 9.807     [javac]               ^
#16 9.807     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 9.807     [javac]           wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 9.807     [javac]                                                                               ^
#16 9.807     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 9.807     [javac]           sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 9.807     [javac]                                                                                ^
#16 9.807     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 9.807     [javac]         String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 9.807     [javac]                                                                                   ^
#16 9.807     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 9.807     [javac]         String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 9.807     [javac]                                                                                   ^
#16 9.807     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 9.807     [javac]         volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 9.807     [javac]                                                                                        ^
#16 9.807     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 9.807     [javac]         volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 9.807     [javac]                                                                                         ^
#16 9.807     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 9.807     [javac]         volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 9.807     [javac]                                                                                        ^
#16 9.808     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 9.808     [javac]             offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 9.808     [javac]                                                                                                               ^
#16 9.808     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 9.808     [javac]             offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 9.808     [javac]                                                                                                               ^
#16 9.908     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.908     [javac]       ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 9.908     [javac]               ^
#16 9.908     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 9.908     [javac]       ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 9.908     [javac]                                            ^
#16 9.908     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.908     [javac]       ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 9.908     [javac]               ^
#16 9.908     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 9.908     [javac]       ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 9.908     [javac]                                             ^
#16 10.01     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.01     [javac]       libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.01     [javac]                                        ^
#16 10.01     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.01     [javac]         doubleResult[i] = new Double(result.get(i).doubleValue());
#16 10.01     [javac]                           ^
#16 10.01     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.01     [javac]       result[i] = new Double(readNumber().doubleValue());
#16 10.01     [javac]                   ^
#16 10.01     [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.01     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.01     [javac] 51 warnings
#16 10.03 
#16 10.03 formats-bsd.jar:
#16 10.04       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.16 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 10.16 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 10.17 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 10.17 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 10.17 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.17 
#16 10.17 deps-formats-gpl:
#16 10.17 
#16 10.17 jar-formats-gpl:
#16 10.27      [echo] isSnapshot = true
#16 10.40 
#16 10.40 init-title:
#16 10.40      [echo] ----------=========== formats-gpl ===========----------
#16 10.40 
#16 10.40 init-timestamp:
#16 10.40 
#16 10.40 init:
#16 10.40 
#16 10.40 copy-resources:
#16 10.40     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.40      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.40 
#16 10.40 compile:
#16 10.77 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.11 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.50 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.51 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 11.62 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 11.74 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.76 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.88 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 12.01 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 12.05 [resolver:resolve] Resolving artifacts
#16 12.06 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 12.06 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 12.21 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 12.21 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 12.58 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 12.58 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 12.60     [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.80     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 14.10     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.10     [javac] import loci.formats.codec.BitWriter;
#16 14.10     [javac]                          ^
#16 14.20     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.20     [javac] import loci.formats.codec.BitWriter;
#16 14.20     [javac]                          ^
#16 16.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 16.31     [javac]       LOGGER.trace("Parsing tokens: {}", tokens);
#16 16.31     [javac]                                          ^
#16 16.31     [javac]   cast to Object for a varargs call
#16 16.31     [javac]   cast to Object[] for a non-varargs call and to suppress this warning
#16 16.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.31     [javac]     BitWriter bits = null;
#16 16.31     [javac]     ^
#16 16.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.31     [javac]       bits = new BitWriter(planes[index].length / 8);
#16 16.31     [javac]                  ^
#16 16.61     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 16.61     [javac]     CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 16.61     [javac]                                                    ^
#16 17.01     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#16 17.01     [javac]       store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#16 17.01     [javac]                                   ^
#16 17.01     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#16 17.01     [javac]       AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#16 17.01     [javac]                              ^
#16 17.01     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.01     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.01     [javac]     ^
#16 17.01     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.01     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 17.01     [javac]                          ^
#16 17.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 17.31     [javac]     Variable variable = group.findVariable(variableName);
#16 17.31     [javac]                              ^
#16 17.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 17.31     [javac]     Variable variable = group.findVariable(variableName);
#16 17.31     [javac]                              ^
#16 17.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 17.31     [javac]       List<Attribute> attributes = variable.getAttributes();
#16 17.31     [javac]                                            ^
#16 17.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.31     [javac]       String groupName = group.getName();
#16 17.31     [javac]                               ^
#16 17.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 17.31     [javac]       List<Attribute> attributes = group.getAttributes();
#16 17.31     [javac]                                         ^
#16 17.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 17.31     [javac]         String variableName = variable.getName();
#16 17.31     [javac]                                       ^
#16 17.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 17.31     [javac]       Group nextParent = parent.findGroup(token);
#16 17.31     [javac]                                ^
#16 17.31     [javac] Note: Some input files use unchecked or unsafe operations.
#16 17.31     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.31     [javac] 18 warnings
#16 17.34 
#16 17.34 formats-gpl.jar:
#16 17.34       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 17.50 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 17.50 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 17.60 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 17.60 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 17.61 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 17.61 
#16 17.61 deps-bio-formats-plugins:
#16 17.61 
#16 17.61 jar-bio-formats-plugins:
#16 17.70      [echo] isSnapshot = true
#16 17.83 
#16 17.83 init-title:
#16 17.83      [echo] ----------=========== bio-formats_plugins ===========----------
#16 17.83 
#16 17.83 init-timestamp:
#16 17.83 
#16 17.83 init:
#16 17.83 
#16 17.83 copy-resources:
#16 17.83     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.84      [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.84 
#16 17.84 compile:
#16 18.08 [resolver:resolve] Resolving artifacts
#16 18.10     [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.31     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 19.11     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.11     [javac] import loci.common.ReflectedUniverse;
#16 19.11     [javac]                   ^
#16 19.11     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.11     [javac] import loci.common.ReflectedUniverse;
#16 19.11     [javac]                   ^
#16 19.71     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 19.71     [javac]     "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 19.71     [javac]                                      ^
#16 19.91     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.91     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 19.91     [javac]         ^
#16 19.91     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.91     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 19.91     [javac]                                   ^
#16 20.01     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.01     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 20.01     [javac]     ^
#16 20.01     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.01     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 20.01     [javac]                                ^
#16 20.38     [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 20.38     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 20.38     [javac] 8 warnings
#16 20.38 
#16 20.38 bio-formats-plugins.jar:
#16 20.39       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 20.42 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 20.42 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 20.43 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 20.44 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 20.44 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 20.44 
#16 20.44 deps-bio-formats-tools:
#16 20.44 
#16 20.44 jar-bio-formats-tools:
#16 20.54      [echo] isSnapshot = true
#16 20.67 
#16 20.67 init-title:
#16 20.67      [echo] ----------=========== bio-formats-tools ===========----------
#16 20.67 
#16 20.67 init-timestamp:
#16 20.67 
#16 20.67 init:
#16 20.67 
#16 20.67 copy-resources:
#16 20.67     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.67 
#16 20.67 compile:
#16 20.90 [resolver:resolve] Resolving artifacts
#16 20.91     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.11     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 22.19     [javac] 1 warning
#16 22.19 
#16 22.19 bio-formats-tools.jar:
#16 22.20       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 22.20 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 22.21 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 22.21 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 22.21 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 22.21 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 22.21 
#16 22.21 deps-tests:
#16 22.21 
#16 22.21 jar-tests:
#16 22.31      [echo] isSnapshot = true
#16 22.44 
#16 22.44 init-title:
#16 22.44      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 22.44 
#16 22.44 init-timestamp:
#16 22.44 
#16 22.44 init:
#16 22.44 
#16 22.44 copy-resources:
#16 22.44     [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.44 
#16 22.44 compile:
#16 22.73 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.80 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.16 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.18 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.94 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.87 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 24.89 [resolver:resolve] Resolving artifacts
#16 24.90 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.94 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 26.15 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 26.16 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 26.74 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 27.10 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 27.11     [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 27.31     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 28.31     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 28.31     [javac]         int index = unflattenedReader.getCoreIndex();
#16 28.31     [javac]                                      ^
#16 28.31     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 28.31     [javac]         reader.setCoreIndex(index);
#16 28.31     [javac]               ^
#16 28.51     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 28.51     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 28.51     [javac]                                              ^
#16 28.61     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 28.61     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 28.61     [javac]                                              ^
#16 28.82     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 28.82     [javac]         FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 28.82     [javac]                                                    ^
#16 28.82     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 28.82     [javac]         FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 28.82     [javac]                                                    ^
#16 28.82     [javac] Note: Some input files use unchecked or unsafe operations.
#16 28.82     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 28.82     [javac] 7 warnings
#16 28.87 
#16 28.87 tests.jar:
#16 28.87       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 28.89 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 28.89 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 28.89 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 28.89 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 28.90 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.90 
#16 28.90 jars:
#16 28.90 
#16 28.90 copy-jars:
#16 28.90 
#16 28.90 deps-formats-api:
#16 28.94      [echo] isSnapshot = true
#16 28.99 
#16 28.99 install-pom:
#16 29.14 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 29.14 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.14 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 29.15 
#16 29.15 jar-formats-api:
#16 29.23      [echo] isSnapshot = true
#16 29.35 
#16 29.35 init-title:
#16 29.35      [echo] ----------=========== formats-api ===========----------
#16 29.35 
#16 29.35 init-timestamp:
#16 29.35 
#16 29.35 init:
#16 29.35 
#16 29.35 copy-resources:
#16 29.36 
#16 29.36 compile:
#16 29.48 [resolver:resolve] Resolving artifacts
#16 29.49 
#16 29.49 formats-api.jar:
#16 29.51 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 29.51 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 29.51 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 29.52 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.52 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 29.52 
#16 29.52 deps-turbojpeg:
#16 29.52 
#16 29.52 jar-turbojpeg:
#16 29.60      [echo] isSnapshot = true
#16 29.72 
#16 29.72 init-title:
#16 29.72      [echo] ----------=========== turbojpeg ===========----------
#16 29.72 
#16 29.72 init-timestamp:
#16 29.72 
#16 29.72 init:
#16 29.72 
#16 29.72 copy-resources:
#16 29.72 
#16 29.72 compile:
#16 29.73 [resolver:resolve] Resolving artifacts
#16 29.73 
#16 29.73 jar:
#16 29.74 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 29.75 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 29.75 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 29.75 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.76 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 29.76 
#16 29.76 deps-formats-bsd:
#16 29.76 
#16 29.76 jar-formats-bsd:
#16 29.84      [echo] isSnapshot = true
#16 29.98 
#16 29.98 init-title:
#16 29.98      [echo] ----------=========== formats-bsd ===========----------
#16 29.98 
#16 29.98 init-timestamp:
#16 29.98 
#16 29.98 init:
#16 29.98 
#16 29.98 copy-resources:
#16 29.98 
#16 29.98 compile:
#16 30.18 [resolver:resolve] Resolving artifacts
#16 30.20 
#16 30.20 formats-bsd.jar:
#16 30.23 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 30.24 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 30.24 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 30.24 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 30.24 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 30.24 
#16 30.24 deps-formats-gpl:
#16 30.24 
#16 30.24 jar-formats-gpl:
#16 30.32      [echo] isSnapshot = true
#16 30.45 
#16 30.45 init-title:
#16 30.45      [echo] ----------=========== formats-gpl ===========----------
#16 30.45 
#16 30.45 init-timestamp:
#16 30.45 
#16 30.45 init:
#16 30.45 
#16 30.45 copy-resources:
#16 30.45 
#16 30.45 compile:
#16 30.68 [resolver:resolve] Resolving artifacts
#16 30.70 
#16 30.70 formats-gpl.jar:
#16 30.73 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 30.73 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 30.74 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 30.74 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 30.74 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 30.74 
#16 30.74 deps-bio-formats-plugins:
#16 30.74 
#16 30.74 jar-bio-formats-plugins:
#16 30.82      [echo] isSnapshot = true
#16 30.95 
#16 30.95 init-title:
#16 30.95      [echo] ----------=========== bio-formats_plugins ===========----------
#16 30.95 
#16 30.95 init-timestamp:
#16 30.95 
#16 30.95 init:
#16 30.95 
#16 30.95 copy-resources:
#16 30.95 
#16 30.95 compile:
#16 31.18 [resolver:resolve] Resolving artifacts
#16 31.20 
#16 31.20 bio-formats-plugins.jar:
#16 31.21 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 31.21 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 31.21 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 31.21 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 31.22 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 31.22 
#16 31.22 deps-bio-formats-tools:
#16 31.22 
#16 31.22 jar-bio-formats-tools:
#16 31.30      [echo] isSnapshot = true
#16 31.43 
#16 31.43 init-title:
#16 31.43      [echo] ----------=========== bio-formats-tools ===========----------
#16 31.43 
#16 31.43 init-timestamp:
#16 31.43 
#16 31.43 init:
#16 31.43 
#16 31.43 copy-resources:
#16 31.43 
#16 31.43 compile:
#16 31.66 [resolver:resolve] Resolving artifacts
#16 31.67 
#16 31.67 bio-formats-tools.jar:
#16 31.67 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 31.68 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 31.68 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 31.68 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 31.68 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 31.68 
#16 31.68 deps-tests:
#16 31.68 
#16 31.68 jar-tests:
#16 31.77      [echo] isSnapshot = true
#16 31.90 
#16 31.90 init-title:
#16 31.90      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 31.90 
#16 31.90 init-timestamp:
#16 31.90 
#16 31.90 init:
#16 31.90 
#16 31.90 copy-resources:
#16 31.90 
#16 31.90 compile:
#16 32.13 [resolver:resolve] Resolving artifacts
#16 32.14 
#16 32.14 tests.jar:
#16 32.15 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 32.15 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 32.15 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 32.15 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 32.15 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 32.16 
#16 32.16 jars:
#16 32.16 
#16 32.16 tools:
#16 32.16      [echo] ----------=========== bioformats_package ===========----------
#16 32.24      [echo] isSnapshot = true
#16 32.38 
#16 32.38 init-timestamp:
#16 32.38 
#16 32.38 bundle:
#16 32.61 [resolver:resolve] Resolving artifacts
#16 32.62     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.66     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.1.1-SNAPSHOT/ome-common-6.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.68     [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.71     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.71     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.78     [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.80     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.86     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.87     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.13     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.19     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.21     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.28     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.29     [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.30     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.30     [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.50     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.07     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.07     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.07     [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.08     [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.23     [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.23     [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.24     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.1-SNAPSHOT/ome-xml-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.31     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.1-SNAPSHOT/specification-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.38     [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.39     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.2-SNAPSHOT/ome-codecs-1.1.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.41     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.56     [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.65     [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.69     [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.70     [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.81     [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.84     [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.36     [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.39     [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.42     [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.54     [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.56     [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.58     [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.59     [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.84     [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.93     [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.99     [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.10     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.12     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 37.83     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.07     [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.08     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.64     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.65     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.78     [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.83     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.84     [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.85     [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.94     [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.97     [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.40     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.41     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.42     [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.44     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.44     [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.47     [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.90     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 40.02     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 40.55       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 47.70    [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.55 [resolver:install] Using default POM (ome:bioformats_package:8.4.0-SNAPSHOT)
#16 48.55 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.pom
#16 48.56 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.jar
#16 48.60 [resolver:install] Installing ome:bioformats_package:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 48.60 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 48.61 
#16 48.61 BUILD SUCCESSFUL
#16 48.61 Total time: 47 seconds
#16 DONE 50.0s

#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.5s

#18 exporting to image
#18 exporting layers
#18 exporting layers 4.1s done
#18 writing image sha256:88ab391a092a634b5dd6c7cf21ee225de010866519fc5e279aaa550cc919a2f8 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 4.1s

 [33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS