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Full Log#14 124.7 [[1;34mINFO[m] Storing buildNumber: 75112a7cc905b8b7a4b3af26ee10fe28b2824e14 at timestamp: 1759826656421
#14 124.7 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 124.7 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
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#14 124.7 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-api' && 'git' 'rev-parse' '--verify' 'HEAD'
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#14 124.7 [[1;34mINFO[m] Compiling 54 source files with javac [debug release 8] to target/classes
#14 125.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java: Some input files use or override a deprecated API.
#14 125.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java: Recompile with -Xlint:deprecation for details.
#14 125.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java: Some input files use unchecked or unsafe operations.
#14 125.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java: Recompile with -Xlint:unchecked for details.
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#14 125.3 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-api/test/loci/formats/utests/CoreMetadataListTest.java: /bio-formats-build/bioformats/components/formats-api/test/loci/formats/utests/CoreMetadataListTest.java uses unchecked or unsafe operations.
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#14 125.3 [[1;34mINFO[m] -------------------------------------------------------
#14 125.3 [[1;34mINFO[m] T E S T S
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#14 125.5 [[1;34mINFO[m] Running [1mTestSuite[m
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#14 126.0 [[1;34mINFO[m] [1;32mTests run: [0;1;32m224[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.473 s - in [1mTestSuite[m
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#14 126.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-api
#14 126.4 [[1;34mINFO[m] Storing buildNumber: 75112a7cc905b8b7a4b3af26ee10fe28b2824e14 at timestamp: 1759826658082
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#14 126.4 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-api/target/formats-api-8.4.0-SNAPSHOT-sources.jar
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#14 126.4 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-api/target/formats-api-8.4.0-SNAPSHOT-tests.jar
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#14 126.4 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-api/target/formats-api-8.4.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#14 126.4 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#14 126.4 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-api/target/formats-api-8.4.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT-sources.jar
#14 126.4 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-api/target/formats-api-8.4.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT-tests.jar
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#14 126.4 [[1;34mINFO[m] [1m--------------------------< [0;36mome:formats-bsd[0;1m >---------------------------[m
#14 126.4 [[1;34mINFO[m] [1mBuilding BSD Bio-Formats readers and writers 8.4.0-SNAPSHOT [15/24][m
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#14 143.0 Downloading from central: https://repo.maven.apache.org/maven2/net/java/jvnet-parent/5/jvnet-parent-5.pom
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#14 143.1 Downloading from central: https://repo.maven.apache.org/maven2/org/yaml/snakeyaml/2.0/snakeyaml-2.0.pom
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#14 143.2 Downloading from central: https://repo.maven.apache.org/maven2/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar
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#14 143.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar
#14 143.2 Downloading from central: https://repo.maven.apache.org/maven2/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar
#14 143.2 Downloading from central: https://repo.maven.apache.org/maven2/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar
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#14 143.3 Downloading from central: https://repo.maven.apache.org/maven2/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar
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#14 143.3 Downloading from central: https://repo.maven.apache.org/maven2/cisd/base/18.09.0/base-18.09.0.jar
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#14 143.3 Progress (2): 124 kB | 544/703 kB
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#14 143.3 Downloading from central: https://repo.maven.apache.org/maven2/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar
#14 143.3 Downloading from central: https://repo.maven.apache.org/maven2/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar
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#14 143.4 Progress (3): 217/733 kB | 143 kB | 21/215 kB
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#14 143.4 Downloading from central: https://repo.maven.apache.org/maven2/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar
#14 143.4 Progress (3): 733 kB | 215 kB | 4.1/75 kB
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#14 143.4 Downloaded from central: https://repo.maven.apache.org/maven2/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar (733 kB at 3.3 MB/s)
#14 143.4 Downloading from central: https://repo.maven.apache.org/maven2/javax/xml/bind/jaxb-api/2.3.0/jaxb-api-2.3.0.jar
#14 143.4 Downloading from central: https://repo.maven.apache.org/maven2/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar
#14 143.4 Downloading from central: https://repo.maven.apache.org/maven2/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar
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#14 143.4 Progress (1): 0.8/1.4 MB
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Downloaded from central: https://repo.maven.apache.org/maven2/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar (221 kB at 728 kB/s)
#14 143.5 Progress (3): 1.4 MB | 126 kB | 111/335 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar (1.4 MB at 4.7 MB/s)
#14 143.5 Progress (2): 126 kB | 135/335 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/javax/xml/bind/jaxb-api/2.3.0/jaxb-api-2.3.0.jar (126 kB at 407 kB/s)
#14 143.5 Progress (1): 152/335 kB
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#14 143.6 Downloading from scijava: https://maven.scijava.org/content/groups/public/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar
#14 143.6 Downloading from scijava: https://maven.scijava.org/content/groups/public/cisd/base/18.09.0/base-18.09.0.jar
#14 143.6 Downloading from scijava: https://maven.scijava.org/content/groups/public/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar
#14 143.8 Progress (1): 0/8.5 MB
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Downloaded from scijava: https://maven.scijava.org/content/groups/public/cisd/base/18.09.0/base-18.09.0.jar (213 kB at 230 kB/s)
#14 144.6 Progress (2): 1.2/8.5 MB | 508 kB
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Downloaded from scijava: https://maven.scijava.org/content/groups/public/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar (508 kB at 440 kB/s)
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Downloaded from scijava: https://maven.scijava.org/content/groups/public/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar (8.5 MB at 2.0 MB/s)
#14 147.8 [[1;34mINFO[m]
#14 147.8 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mformats-bsd[0;1m ---[m
#14 147.8 [[1;34mINFO[m]
#14 147.8 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mformats-bsd[0;1m ---[m
#14 147.8 [[1;34mINFO[m]
#14 147.8 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-bsd[0;1m ---[m
#14 147.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-bsd' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 147.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-bsd
#14 147.8 [[1;34mINFO[m] Storing buildNumber: 75112a7cc905b8b7a4b3af26ee10fe28b2824e14 at timestamp: 1759826679490
#14 147.8 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 147.8 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 147.8
#14 147.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-bsd' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 147.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-bsd
#14 147.8 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 147.8 [[1;34mINFO[m]
#14 147.8 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mformats-bsd[0;1m ---[m
#14 147.8 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 147.8 [[1;34mINFO[m] Copying 1 resource
#14 147.8 [[1;34mINFO[m] Copying 0 resource
#14 147.8 [[1;34mINFO[m]
#14 147.8 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.14.0:compile[m [1m(default-compile)[m @ [36mformats-bsd[0;1m ---[m
#14 147.8 [[1;34mINFO[m] Recompiling the module because of [1mchanged dependency[m.
#14 147.8 [[1;34mINFO[m] Compiling 177 source files with javac [debug release 8] to target/classes
#14 149.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java: Some input files use or override a deprecated API.
#14 149.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java: Recompile with -Xlint:deprecation for details.
#14 149.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/cache/CacheStrategy.java: Some input files use unchecked or unsafe operations.
#14 149.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/cache/CacheStrategy.java: Recompile with -Xlint:unchecked for details.
#14 149.2 [[1;34mINFO[m]
#14 149.2 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mformats-bsd[0;1m ---[m
#14 149.2 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 149.2 [[1;34mINFO[m] Copying 10 resources
#14 149.2 [[1;34mINFO[m]
#14 149.2 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.14.0:testCompile[m [1m(default-testCompile)[m @ [36mformats-bsd[0;1m ---[m
#14 149.2 [[1;34mINFO[m] Recompiling the module because of [1mchanged dependency[m.
#14 149.2 [[1;34mINFO[m] Compiling 75 source files with javac [debug release 8] to target/test-classes
#14 149.6 [[1;33mWARNING[m] /bio-formats-build/bioformats/components/formats-bsd/test/loci/formats/utests/FileStitcherTest.java:[220,51] non-varargs call of varargs method with inexact argument type for last parameter;
#14 149.6 cast to java.lang.Object for a varargs call
#14 149.6 cast to java.lang.Object[] for a non-varargs call and to suppress this warning
#14 149.6 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-bsd/test/loci/formats/utests/CompressDecompressTest.java: Some input files use or override a deprecated API.
#14 149.6 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-bsd/test/loci/formats/utests/CompressDecompressTest.java: Recompile with -Xlint:deprecation for details.
#14 149.6 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-bsd/test/loci/formats/utests/FileStitcherTest.java: Some input files use unchecked or unsafe operations.
#14 149.6 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-bsd/test/loci/formats/utests/FileStitcherTest.java: Recompile with -Xlint:unchecked for details.
#14 149.6 [[1;34mINFO[m]
#14 149.6 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mformats-bsd[0;1m ---[m
#14 149.6 [[1;34mINFO[m]
#14 149.6 [[1;34mINFO[m] -------------------------------------------------------
#14 149.6 [[1;34mINFO[m] T E S T S
#14 149.6 [[1;34mINFO[m] -------------------------------------------------------
#14 149.8 [[1;34mINFO[m] Running [1mTestSuite[m
#14 150.0 SLF4J: No SLF4J providers were found.
#14 150.0 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 150.0 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 307.8 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1468[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 157.968 s - in [1mTestSuite[m
#14 308.4 [[1;34mINFO[m]
#14 308.4 [[1;34mINFO[m] Results:
#14 308.4 [[1;34mINFO[m]
#14 308.4 [[1;34mINFO[m] [1;32mTests run: 1468, Failures: 0, Errors: 0, Skipped: 0[m
#14 308.4 [[1;34mINFO[m]
#14 308.4 [[1;34mINFO[m]
#14 308.4 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(test-no-hdf)[m @ [36mformats-bsd[0;1m ---[m
#14 308.4 [[1;34mINFO[m]
#14 308.4 [[1;34mINFO[m] -------------------------------------------------------
#14 308.4 [[1;34mINFO[m] T E S T S
#14 308.4 [[1;34mINFO[m] -------------------------------------------------------
#14 308.6 [[1;34mINFO[m] Running [1mTestSuite[m
#14 308.8 SLF4J: No SLF4J providers were found.
#14 308.8 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 308.8 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 308.8 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.269 s - in [1mTestSuite[m
#14 309.2 [[1;34mINFO[m]
#14 309.2 [[1;34mINFO[m] Results:
#14 309.2 [[1;34mINFO[m]
#14 309.2 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 309.2 [[1;34mINFO[m]
#14 309.2 [[1;34mINFO[m]
#14 309.2 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mformats-bsd[0;1m ---[m
#14 309.2 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-bsd/target/formats-bsd-8.4.0-SNAPSHOT.jar
#14 309.2 [[1;34mINFO[m]
#14 309.2 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mformats-bsd[0;1m >>>[m
#14 309.2 [[1;34mINFO[m]
#14 309.2 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mformats-bsd[0;1m ---[m
#14 309.2 [[1;34mINFO[m]
#14 309.2 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-bsd[0;1m ---[m
#14 309.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-bsd' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 309.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-bsd
#14 309.3 [[1;34mINFO[m] Storing buildNumber: 75112a7cc905b8b7a4b3af26ee10fe28b2824e14 at timestamp: 1759826840958
#14 309.3 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 309.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 309.3
#14 309.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-bsd' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 309.3 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-bsd
#14 309.3 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 309.3 [[1;34mINFO[m]
#14 309.3 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mformats-bsd[0;1m <<<[m
#14 309.3 [[1;34mINFO[m]
#14 309.3 [[1;34mINFO[m]
#14 309.3 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mformats-bsd[0;1m ---[m
#14 309.3 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-bsd/target/formats-bsd-8.4.0-SNAPSHOT-sources.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar (42 kB at 215 kB/s)
#14 337.8 Progress (4): 614/780 kB | 338 kB | 121 kB | 0.7/14 MB
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Downloaded from central: https://repo.maven.apache.org/maven2/commons-math/commons-math/1.2/commons-math-1.2.jar (338 kB at 1.5 MB/s)
#14 337.8 Downloaded from central: https://repo.maven.apache.org/maven2/com/google/re2j/re2j/1.3/re2j-1.3.jar (121 kB at 540 kB/s)
#14 337.8 Progress (2): 780 kB | 1.5/14 MB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar (780 kB at 3.1 MB/s)
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#14 338.3 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#14 338.3 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/repository/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (4.3 MB at 1.5 MB/s)
#14 341.2 [[1;34mINFO[m]
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#14 341.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 341.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 341.2 [[1;34mINFO[m] Storing buildNumber: 75112a7cc905b8b7a4b3af26ee10fe28b2824e14 at timestamp: 1759826872916
#14 341.2 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 341.2 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 341.2
#14 341.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 341.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 341.2 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
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#14 341.2 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 341.2 [[1;34mINFO[m] Copying 2 resources
#14 341.2 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/formats-gpl/lib
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#14 341.2 [[1;34mINFO[m] Recompiling the module because of [1mchanged dependency[m.
#14 341.2 [[1;34mINFO[m] Compiling 178 source files with javac [debug release 8] to target/classes
#14 343.3 [[1;33mWARNING[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:[1321,42] non-varargs call of varargs method with inexact argument type for last parameter;
#14 343.3 cast to java.lang.Object for a varargs call
#14 343.3 cast to java.lang.Object[] for a non-varargs call and to suppress this warning
#14 343.3 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Some input files use or override a deprecated API.
#14 343.3 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Recompile with -Xlint:deprecation for details.
#14 343.3 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Some input files use unchecked or unsafe operations.
#14 343.3 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Recompile with -Xlint:unchecked for details.
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#14 343.3 [[1;34mINFO[m] Compiling 23 source files with javac [debug release 8] to target/test-classes
#14 343.5 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java uses unchecked or unsafe operations.
#14 343.5 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: Recompile with -Xlint:unchecked for details.
#14 343.5 [[1;34mINFO[m]
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#14 343.5 [[1;34mINFO[m]
#14 343.5 [[1;34mINFO[m] -------------------------------------------------------
#14 343.5 [[1;34mINFO[m] T E S T S
#14 343.5 [[1;34mINFO[m] -------------------------------------------------------
#14 343.7 [[1;34mINFO[m] Running [1mTestSuite[m
#14 344.8 2025-10-07 08:47:56,552 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@46074492 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 344.8 2025-10-07 08:47:56,555 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@2baa8d82 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 344.9 2025-10-07 08:47:56,634 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@15deb1dc reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 344.9 2025-10-07 08:47:56,635 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@24b52d3e reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 345.0 2025-10-07 08:47:56,703 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@3ee39da0 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 345.0 2025-10-07 08:47:56,703 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@5d332969 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 345.0 2025-10-07 08:47:56,753 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@5b43e173 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 345.0 2025-10-07 08:47:56,753 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@28f8e165 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 345.2 2025-10-07 08:47:56,874 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@2e6ba49a reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 345.2 2025-10-07 08:47:56,874 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@5f5b5ca4 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 345.2 2025-10-07 08:47:56,917 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@c3c4c1c reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 345.2 2025-10-07 08:47:56,918 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@27e32fe4 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 345.2 2025-10-07 08:47:56,958 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@272a179c reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 345.2 2025-10-07 08:47:56,958 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@3eba57a7 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 345.3 2025-10-07 08:47:56,993 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@16fe9c29 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 345.3 2025-10-07 08:47:56,993 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@3e9803c2 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 345.6 [[1;34mINFO[m] [1;32mTests run: [0;1;32m99[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.843 s - in [1mTestSuite[m
#14 345.9 [[1;34mINFO[m]
#14 345.9 [[1;34mINFO[m] Results:
#14 345.9 [[1;34mINFO[m]
#14 345.9 [[1;34mINFO[m] [1;32mTests run: 99, Failures: 0, Errors: 0, Skipped: 0[m
#14 345.9 [[1;34mINFO[m]
#14 345.9 [[1;34mINFO[m]
#14 345.9 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-mdb-test)[m @ [36mformats-gpl[0;1m ---[m
#14 345.9 [[1;34mINFO[m]
#14 345.9 [[1;34mINFO[m] -------------------------------------------------------
#14 345.9 [[1;34mINFO[m] T E S T S
#14 345.9 [[1;34mINFO[m] -------------------------------------------------------
#14 346.1 [[1;34mINFO[m] Running [1mTestSuite[m
#14 346.5 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.432 s - in [1mTestSuite[m
#14 346.8 [[1;34mINFO[m]
#14 346.8 [[1;34mINFO[m] Results:
#14 346.8 [[1;34mINFO[m]
#14 346.8 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 346.8 [[1;34mINFO[m]
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#14 346.8 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-poi-test)[m @ [36mformats-gpl[0;1m ---[m
#14 346.8 [[1;34mINFO[m]
#14 346.8 [[1;34mINFO[m] -------------------------------------------------------
#14 346.8 [[1;34mINFO[m] T E S T S
#14 346.8 [[1;34mINFO[m] -------------------------------------------------------
#14 347.0 [[1;34mINFO[m] Running [1mTestSuite[m
#14 347.4 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.412 s - in [1mTestSuite[m
#14 347.8 [[1;34mINFO[m]
#14 347.8 [[1;34mINFO[m] Results:
#14 347.8 [[1;34mINFO[m]
#14 347.8 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 347.8 [[1;34mINFO[m]
#14 347.8 [[1;34mINFO[m]
#14 347.8 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-netcdf-test)[m @ [36mformats-gpl[0;1m ---[m
#14 347.8 [[1;34mINFO[m]
#14 347.8 [[1;34mINFO[m] -------------------------------------------------------
#14 347.8 [[1;34mINFO[m] T E S T S
#14 347.8 [[1;34mINFO[m] -------------------------------------------------------
#14 348.0 [[1;34mINFO[m] Running [1mTestSuite[m
#14 348.4 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.43 s - in [1mTestSuite[m
#14 348.7 [[1;34mINFO[m]
#14 348.7 [[1;34mINFO[m] Results:
#14 348.7 [[1;34mINFO[m]
#14 348.7 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 348.7 [[1;34mINFO[m]
#14 348.7 [[1;34mINFO[m]
#14 348.7 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mformats-gpl[0;1m ---[m
#14 348.7 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT.jar
#14 348.8 [[1;34mINFO[m]
#14 348.8 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m >>>[m
#14 348.8 [[1;34mINFO[m]
#14 348.8 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mformats-gpl[0;1m ---[m
#14 348.8 [[1;34mINFO[m]
#14 348.8 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 348.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 348.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 348.8 [[1;34mINFO[m] Storing buildNumber: 75112a7cc905b8b7a4b3af26ee10fe28b2824e14 at timestamp: 1759826880474
#14 348.8 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 348.8 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 348.8
#14 348.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 348.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 348.8 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 348.8 [[1;34mINFO[m]
#14 348.8 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m <<<[m
#14 348.8 [[1;34mINFO[m]
#14 348.8 [[1;34mINFO[m]
#14 348.8 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 348.8 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT-sources.jar
#14 348.8 [[1;34mINFO[m]
#14 348.8 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 348.8 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT-tests.jar
#14 348.9 [[1;34mINFO[m]
#14 348.9 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mformats-gpl[0;1m ---[m
#14 348.9 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#14 348.9 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#14 348.9 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT-sources.jar
#14 348.9 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.4.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT-tests.jar
#14 348.9 [[1;34mINFO[m]
#14 348.9 [[1;34mINFO[m] [1m----------------------< [0;36mome:bio-formats_plugins[0;1m >-----------------------[m
#14 348.9 [[1;34mINFO[m] [1mBuilding Bio-Formats Plugins for ImageJ 8.4.0-SNAPSHOT [17/24][m
#14 348.9 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 348.9 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom
#14 348.9 Progress (1): 4.1 kB
Progress (1): 7.9 kB
Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom (7.9 kB at 1.3 kB/s)
#14 355.0 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar
#14 359.9 Progress (1): 0/2.5 MB
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Downloading from scijava: https://maven.scijava.org/content/groups/public/net/imagej/ij/1.54c/ij-1.54c.jar
#14 601.8 Downloading from ome: https://artifacts.openmicroscopy.org/artifactory/maven/net/imagej/ij/1.54c/ij-1.54c.jar
#14 656.8 Progress (1): 0/2.5 MB
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[[1;34mINFO[m] [1m------------------------------------------------------------------------[m
#14 695.4 [[1;34mINFO[m] [1mReactor Summary:[m
#14 695.4 [[1;34mINFO[m]
#14 695.4 [[1;34mINFO[m] OME Common Java 6.1.1-SNAPSHOT ..................... [1;32mSUCCESS[m [ 56.502 s]
#14 695.4 [[1;34mINFO[m] OME Model 6.5.1-SNAPSHOT ........................... [1;32mSUCCESS[m [ 0.006 s]
#14 695.4 [[1;34mINFO[m] Metadata model specification 6.5.1-SNAPSHOT ........ [1;32mSUCCESS[m [ 11.034 s]
#14 695.4 [[1;34mINFO[m] OME XML library 6.5.1-SNAPSHOT ..................... [1;32mSUCCESS[m [ 19.780 s]
#14 695.4 [[1;34mINFO[m] OME POI 5.3.11-SNAPSHOT ............................ [1;32mSUCCESS[m [ 7.712 s]
#14 695.4 [[1;34mINFO[m] MDB Tools (Java port) 5.3.5-SNAPSHOT ............... [1;32mSUCCESS[m [ 3.173 s]
#14 695.4 [[1;34mINFO[m] OME JAI 0.1.6-SNAPSHOT ............................. [1;32mSUCCESS[m [ 6.304 s]
#14 695.4 [[1;34mINFO[m] OME Codecs 1.1.2-SNAPSHOT .......................... [1;32mSUCCESS[m [ 6.305 s]
#14 695.4 [[1;34mINFO[m] OME Stubs 6.0.4-SNAPSHOT ........................... [1;32mSUCCESS[m [ 0.005 s]
#14 695.4 [[1;34mINFO[m] MIPAV stubs 6.0.4-SNAPSHOT ......................... [1;32mSUCCESS[m [ 1.512 s]
#14 695.4 [[1;34mINFO[m] Metakit 5.3.10-SNAPSHOT ............................ [1;32mSUCCESS[m [ 2.786 s]
#14 695.4 [[1;34mINFO[m] Bio-Formats projects 8.4.0-SNAPSHOT ................ [1;32mSUCCESS[m [ 1.306 s]
#14 695.4 [[1;34mINFO[m] libjpeg-turbo Java bindings 8.4.0-SNAPSHOT ......... [1;32mSUCCESS[m [ 0.500 s]
#14 695.4 [[1;34mINFO[m] Bio-Formats API 8.4.0-SNAPSHOT ..................... [1;32mSUCCESS[m [ 2.506 s]
#14 695.4 [[1;34mINFO[m] BSD Bio-Formats readers and writers 8.4.0-SNAPSHOT . [1;32mSUCCESS[m [03:02 min]
#14 695.4 [[1;34mINFO[m] Bio-Formats library 8.4.0-SNAPSHOT ................. [1;32mSUCCESS[m [ 39.513 s]
#14 695.4 [[1;34mINFO[m] Bio-Formats Plugins for ImageJ 8.4.0-SNAPSHOT ...... [1;31mFAILURE[m [05:46 min]
#14 695.4 [[1;34mINFO[m] Bio-Formats command line tools 8.4.0-SNAPSHOT ...... [1;33mSKIPPED[m
#14 695.4 [[1;34mINFO[m] bioformats_package bundle 8.4.0-SNAPSHOT ........... [1;33mSKIPPED[m
#14 695.4 [[1;34mINFO[m] Bio-Formats testing framework 8.4.0-SNAPSHOT ....... [1;33mSKIPPED[m
#14 695.4 [[1;34mINFO[m] Bio-Formats examples 8.4.0-SNAPSHOT ................ [1;33mSKIPPED[m
#14 695.4 [[1;34mINFO[m] Bio-Formats documentation 8.4.0-SNAPSHOT ........... [1;33mSKIPPED[m
#14 695.4 [[1;34mINFO[m] Implementation of Bio-Formats readers for the next-generation file formats 0.6.1-SNAPSHOT [1;33mSKIPPED[m
#14 695.4 [[1;34mINFO[m] Bio-Formats top-level build 6.0.0-SNAPSHOT ......... [1;33mSKIPPED[m
#14 695.4 [[1;34mINFO[m] [1m------------------------------------------------------------------------[m
#14 695.4 [[1;34mINFO[m] [1;31mBUILD FAILURE[m
#14 695.4 [[1;34mINFO[m] [1m------------------------------------------------------------------------[m
#14 695.4 [[1;34mINFO[m] Total time: 11:32 min
#14 695.4 [[1;34mINFO[m] Finished at: 2025-10-07T08:53:47Z
#14 695.4 [[1;34mINFO[m] [1m------------------------------------------------------------------------[m
#14 695.4 [[1;31mERROR[m] Failed to execute goal on project [36mbio-formats_plugins[m: [1;31mCould not resolve dependencies for project ome:bio-formats_plugins:jar:8.4.0-SNAPSHOT: Could not transfer artifact net.imagej:ij:jar:1.54c from/to central (https://repo.maven.apache.org/maven2): GET request of: net/imagej/ij/1.54c/ij-1.54c.jar from central failed[m: Premature end of Content-Length delimited message body (expected: 2,484,048; received: 69,120) -> [1m[Help 1][m
#14 695.4 [[1;31mERROR[m]
#14 695.4 [[1;31mERROR[m] To see the full stack trace of the errors, re-run Maven with the [1m-e[m switch.
#14 695.4 [[1;31mERROR[m] Re-run Maven using the [1m-X[m switch to enable full debug logging.
#14 695.4 [[1;31mERROR[m]
#14 695.4 [[1;31mERROR[m] For more information about the errors and possible solutions, please read the following articles:
#14 695.4 [[1;31mERROR[m] [1m[Help 1][m http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
#14 695.4 [[1;31mERROR[m]
#14 695.4 [[1;31mERROR[m] After correcting the problems, you can resume the build with the command
#14 695.4 [[1;31mERROR[m] [1mmvn <args> -rf :bio-formats_plugins[m
#14 ERROR: process "/bin/sh -c mvn clean install -DskipSphinxTests" did not complete successfully: exit code: 1
------
> [10/13] RUN mvn clean install -DskipSphinxTests:
695.4 [[1;31mERROR[m] Failed to execute goal on project [36mbio-formats_plugins[m: [1;31mCould not resolve dependencies for project ome:bio-formats_plugins:jar:8.4.0-SNAPSHOT: Could not transfer artifact net.imagej:ij:jar:1.54c from/to central (https://repo.maven.apache.org/maven2): GET request of: net/imagej/ij/1.54c/ij-1.54c.jar from central failed[m: Premature end of Content-Length delimited message body (expected: 2,484,048; received: 69,120) -> [1m[Help 1][m
695.4 [[1;31mERROR[m]
695.4 [[1;31mERROR[m] To see the full stack trace of the errors, re-run Maven with the [1m-e[m switch.
695.4 [[1;31mERROR[m] Re-run Maven using the [1m-X[m switch to enable full debug logging.
695.4 [[1;31mERROR[m]
695.4 [[1;31mERROR[m] For more information about the errors and possible solutions, please read the following articles:
695.4 [[1;31mERROR[m] [1m[Help 1][m http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
695.4 [[1;31mERROR[m]
695.4 [[1;31mERROR[m] After correcting the problems, you can resume the build with the command
695.4 [[1;31mERROR[m] [1mmvn <args> -rf :bio-formats_plugins[m
------
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Dockerfile:25
--------------------
23 | RUN pip install -r ome-model/requirements.txt
24 |
25 | >>> RUN mvn clean install -DskipSphinxTests
26 |
27 | WORKDIR /bio-formats-build/bioformats
--------------------
ERROR: failed to solve: process "/bin/sh -c mvn clean install -DskipSphinxTests" did not complete successfully: exit code: 1
Build step 'Execute shell' marked build as failure
Finished: FAILURE
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