Console Output

Skipping 2,102 KB.. Full Log
#14 481.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings-builder/3.1.1/maven-settings-builder-3.1.1.jar
#14 481.3 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/3.1.1/maven-model-3.1.1.jar (154 kB at 2.1 MB/s)
#14 481.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/3.1.1/maven-repository-metadata-3.1.1.jar
#14 481.3 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/3.1.1/maven-artifact-3.1.1.jar (52 kB at 638 kB/s)
#14 481.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/3.1.1/maven-plugin-api-3.1.1.jar
#14 481.3 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/3.1.1/maven-core-3.1.1.jar (557 kB at 6.6 MB/s)
#14 481.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model-builder/3.1.1/maven-model-builder-3.1.1.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/3.1.1/maven-settings-3.1.1.jar (42 kB at 444 kB/s)
#14 481.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-aether-provider/3.1.1/maven-aether-provider-3.1.1.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings-builder/3.1.1/maven-settings-builder-3.1.1.jar (42 kB at 355 kB/s)
#14 481.3 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/3.1.1/maven-plugin-api-3.1.1.jar (45 kB at 320 kB/s)
#14 481.3 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar
#14 481.3 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/3.1.1/maven-repository-metadata-3.1.1.jar (25 kB at 175 kB/s)
#14 481.3 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar
#14 481.3 Progress (3): 160 kB | 60 kB | 4.1/18 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model-builder/3.1.1/maven-model-builder-3.1.1.jar (160 kB at 1.0 MB/s)
#14 481.3 Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar
#14 481.3 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-aether-provider/3.1.1/maven-aether-provider-3.1.1.jar (60 kB at 375 kB/s)
#14 481.3 Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/10.0.1/guava-10.0.1.jar
#14 481.4 Progress (2): 18 kB | 4.1/134 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar (18 kB at 99 kB/s)
#14 481.4 Progress (1): 110/134 kB
                        
Downloading from central: https://repo.maven.apache.org/maven2/com/google/code/findbugs/jsr305/1.3.9/jsr305-1.3.9.jar
#14 481.4 Progress (1): 114/134 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar (134 kB at 632 kB/s)
#14 481.4 Progress (4): 145 kB | 197 kB | 0.7/1.5 MB | 33 kB
                                                  
Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/sisu-guice/3.1.0/sisu-guice-3.1.0-no_aop.jar
#14 481.4 Progress (4): 145 kB | 197 kB | 0.7/1.5 MB | 33 kB
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#14 481.4 Progress (3): 197 kB | 0.8/1.5 MB | 33 kB
                                         
Downloading from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar
#14 481.4 Progress (3): 197 kB | 0.8/1.5 MB | 33 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar (197 kB at 858 kB/s)
#14 481.4 Progress (2): 1.1/1.5 MB | 33 kB
                                
Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar
#14 481.4 Progress (2): 1.2/1.5 MB | 33 kB
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#14 481.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.26/plexus-interpolation-1.26.jar
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#14 481.5 Downloaded from central: https://repo.maven.apache.org/maven2/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar (291 kB at 1.0 MB/s)
#14 481.5 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/sisu-guice/3.1.0/sisu-guice-3.1.0-no_aop.jar (357 kB at 1.2 MB/s)
#14 481.5 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar (50 kB at 172 kB/s)
#14 481.5 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.26/plexus-interpolation-1.26.jar (85 kB at 295 kB/s)
#14 481.5 [[1;33mWARNING[m] Failed to build parent project for com.fasterxml.jackson:jackson-parent:pom:2.20
#14 481.5 [[1;33mWARNING[m] Failed to build parent project for com.fasterxml.jackson:jackson-bom:pom:2.20.0
#14 481.5 [[1;33mWARNING[m] Failed to build parent project for com.fasterxml.jackson:jackson-base:pom:2.20.0
#14 481.5 [[1;33mWARNING[m] Failed to build parent project for com.fasterxml.jackson.core:jackson-databind:jar:2.20.0
#14 481.5 [[1;33mWARNING[m] Failed to build parent project for com.fasterxml.jackson:jackson-parent:pom:2.20
#14 481.5 [[1;33mWARNING[m] Failed to build parent project for com.fasterxml.jackson.core:jackson-annotations:jar:2.20
#14 481.5 [[1;33mWARNING[m] Failed to build parent project for com.fasterxml.jackson:jackson-parent:pom:2.20
#14 481.5 [[1;33mWARNING[m] Failed to build parent project for com.fasterxml.jackson:jackson-bom:pom:2.20.0
#14 481.5 [[1;33mWARNING[m] Failed to build parent project for com.fasterxml.jackson:jackson-base:pom:2.20.0
#14 481.5 [[1;33mWARNING[m] Failed to build parent project for com.fasterxml.jackson.core:jackson-core:jar:2.20.0
#14 481.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/2.5.0/maven-bundle-plugin-2.5.0.pom
#14 481.5 Progress (1): 4.1 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/2.5.0/maven-bundle-plugin-2.5.0.pom (4.7 kB at 73 kB/s)
#14 481.6 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/bndlib/2.3.0/bndlib-2.3.0.pom
#14 481.6 Progress (1): 1.4 kB
                    
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#14 481.7 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/parent/2.3.0/parent-2.3.0.pom
#14 481.7 Progress (1): 4.1 kB
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#14 481.7 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/4.3.1/org.osgi.core-4.3.1.pom
#14 481.7 Progress (1): 1.4 kB
                    
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#14 481.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/2.0.7/maven-core-2.0.7.pom
#14 481.8 Progress (1): 4.1 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/2.0.7/maven-core-2.0.7.pom (6.7 kB at 131 kB/s)
#14 481.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/2.0.7/maven-2.0.7.pom
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#14 485.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/2.5.0/maven-bundle-plugin-2.5.0.jar
#14 485.3 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/bndlib/2.3.0/bndlib-2.3.0.jar
#14 485.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.7/maven-settings-2.0.7.jar
#14 485.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/2.0.7/maven-core-2.0.7.jar
#14 485.3 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/4.3.1/org.osgi.core-4.3.1.jar
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Progress (5): 153 kB 
#14 485.3 [output clipped, log limit 2MiB reached]
#14 612.3 SLF4J: No SLF4J providers were found.
#14 612.3 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 612.3 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 620.6s

#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s

#16 [12/13] RUN ant jars tools
#16 0.515 Buildfile: /bio-formats-build/bioformats/build.xml
#16 0.852      [echo] isSnapshot = true
#16 0.963 
#16 0.963 copy-jars:
#16 0.964 
#16 0.964 deps-formats-api:
#16 1.051      [echo] isSnapshot = true
#16 1.111 
#16 1.111 install-pom:
#16 1.324 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 1.569 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 1.573 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.575 
#16 1.575 jar-formats-api:
#16 1.689      [echo] isSnapshot = true
#16 1.869 
#16 1.869 init-title:
#16 1.870      [echo] ----------=========== formats-api ===========----------
#16 1.870 
#16 1.870 init-timestamp:
#16 1.874 
#16 1.874 init:
#16 1.874 
#16 1.874 copy-resources:
#16 1.875     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.890      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.892 
#16 1.892 compile:
#16 2.075 [resolver:resolve] Resolving artifacts
#16 2.163     [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.778     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.778     [javac] import loci.common.ReflectedUniverse;
#16 2.778     [javac]                   ^
#16 2.878     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.878     [javac]     int currentIndex = r.getCoreIndex();
#16 2.878     [javac]                         ^
#16 2.878     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.879     [javac]     r.setCoreIndex(coreIndex);
#16 2.879     [javac]      ^
#16 2.979     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.979     [javac]     r.setCoreIndex(currentIndex);
#16 2.979     [javac]      ^
#16 3.079     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.079     [javac]   public void setCoreIndex(int no) {
#16 3.079     [javac]               ^
#16 3.080     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.080     [javac]   public int getCoreIndex() {
#16 3.080     [javac]              ^
#16 3.080     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.080     [javac]   public int coreIndexToSeries(int index)
#16 3.080     [javac]              ^
#16 3.080     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.080     [javac]   public int seriesToCoreIndex(int series)
#16 3.080     [javac]              ^
#16 3.080     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.080     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 3.080     [javac]                             ^
#16 3.181     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.181     [javac]     if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 3.181     [javac]                                              ^
#16 3.181     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.181     [javac]     if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 3.181     [javac]                                              ^
#16 3.181     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.181     [javac]       core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 3.181     [javac]                                                      ^
#16 3.181     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.181     [javac]       core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 3.181     [javac]                                                      ^
#16 3.282     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.282     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 3.282     [javac]     ^
#16 3.282     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.282     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 3.282     [javac]                               ^
#16 3.282     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.282     [javac]   public void setCoreIndex(int no) {
#16 3.282     [javac]               ^
#16 3.282     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.283     [javac]   public int getCoreIndex() {
#16 3.283     [javac]              ^
#16 3.283     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.283     [javac]   public int coreIndexToSeries(int index) {
#16 3.283     [javac]              ^
#16 3.283     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.283     [javac]   public int seriesToCoreIndex(int series) {
#16 3.283     [javac]              ^
#16 3.283     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.283     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 3.283     [javac]                             ^
#16 3.384     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.384     [javac]     return getReader().getCoreMetadataList();
#16 3.384     [javac]                       ^
#16 3.384     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.384     [javac]     return getReader().getCoreIndex();
#16 3.384     [javac]                       ^
#16 3.384     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.384     [javac]     getReader().setCoreIndex(no);
#16 3.384     [javac]                ^
#16 3.384     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.384     [javac]     return getReader().seriesToCoreIndex(series);
#16 3.384     [javac]                       ^
#16 3.384     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.384     [javac]     return getReader().coreIndexToSeries(index);
#16 3.384     [javac]                       ^
#16 3.385     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.385     [javac]   public void setCoreIndex(int no) {
#16 3.385     [javac]               ^
#16 3.385     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.385     [javac]   public int getCoreIndex() {
#16 3.385     [javac]              ^
#16 3.385     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.385     [javac]   public int coreIndexToSeries(int index) {
#16 3.385     [javac]              ^
#16 3.385     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.385     [javac]   public int seriesToCoreIndex(int series) {
#16 3.385     [javac]              ^
#16 3.385     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.385     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 3.385     [javac]                             ^
#16 3.385     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.385     [javac]     List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.385     [javac]                                        ^
#16 3.386     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.386     [javac]     return reader.getCoreIndex();
#16 3.386     [javac]                  ^
#16 3.386     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.386     [javac]     reader.setCoreIndex(no);
#16 3.386     [javac]           ^
#16 3.386     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.386     [javac]     return reader.seriesToCoreIndex(series);
#16 3.386     [javac]                  ^
#16 3.386     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.386     [javac]     return reader.coreIndexToSeries(index);
#16 3.386     [javac]                  ^
#16 3.564     [javac] Note: Some input files use unchecked or unsafe operations.
#16 3.564     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 3.564     [javac] 35 warnings
#16 3.564 
#16 3.564 formats-api.jar:
#16 3.565     [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.589       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 3.621 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 3.625 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 3.679 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 3.681 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 3.684 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 3.684 
#16 3.684 deps-turbojpeg:
#16 3.685 
#16 3.685 jar-turbojpeg:
#16 3.800      [echo] isSnapshot = true
#16 3.983 
#16 3.983 init-title:
#16 3.983      [echo] ----------=========== turbojpeg ===========----------
#16 3.983 
#16 3.983 init-timestamp:
#16 3.983 
#16 3.983 init:
#16 3.983 
#16 3.983 copy-resources:
#16 3.984     [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 3.985 
#16 3.985 compile:
#16 3.997 [resolver:resolve] Resolving artifacts
#16 4.000     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.792 
#16 4.792 jar:
#16 4.797       [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 4.984 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 4.992 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 4.995 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 4.997 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 5.002 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 5.003 
#16 5.003 deps-formats-bsd:
#16 5.003 
#16 5.003 jar-formats-bsd:
#16 5.109      [echo] isSnapshot = true
#16 5.292 
#16 5.292 init-title:
#16 5.292      [echo] ----------=========== formats-bsd ===========----------
#16 5.292 
#16 5.292 init-timestamp:
#16 5.292 
#16 5.292 init:
#16 5.293 
#16 5.293 copy-resources:
#16 5.293     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.297      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.297 
#16 5.297 compile:
#16 5.545 [resolver:resolve] Resolving artifacts
#16 5.582     [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.592     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.592     [javac] import loci.common.ReflectedUniverse;
#16 6.592     [javac]                   ^
#16 6.893     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.893     [javac]       core.size() != reader.getCoreMetadataList().size())
#16 6.893     [javac]                            ^
#16 6.893     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.893     [javac]       List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 6.893     [javac]                                          ^
#16 6.993     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.993     [javac]     int n = reader.getCoreMetadataList().size();
#16 6.993     [javac]                   ^
#16 6.993     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.993     [javac]     reader.setCoreIndex(coreIndex);
#16 6.993     [javac]           ^
#16 6.993     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.993     [javac]     int n = reader.getCoreMetadataList().size();
#16 6.993     [javac]                   ^
#16 6.993     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.993     [javac]     int n = reader.getCoreMetadataList().size();
#16 6.993     [javac]                   ^
#16 6.993     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.993     [javac]     if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 6.993     [javac]                                         ^
#16 6.993     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.993     [javac]     int n = reader.getCoreMetadataList().size();
#16 6.993     [javac]                   ^
#16 6.993     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.994     [javac]     if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 6.994     [javac]                                         ^
#16 6.994     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.994     [javac]     int n = reader.getCoreMetadataList().size();
#16 6.994     [javac]                   ^
#16 6.994     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.994     [javac]     if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 6.994     [javac]                                  ^
#16 6.994     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.994     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 6.994     [javac]                  ^
#16 6.994     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.994     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 6.994     [javac]                                              ^
#16 6.994     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.994     [javac]     return noStitch ? reader.getCoreMetadataList() : core;
#16 6.994     [javac]                             ^
#16 6.994     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.994     [javac]     if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 6.994     [javac]               ^
#16 6.994     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.994     [javac]       seriesCount = reader.getCoreMetadataList().size();
#16 6.994     [javac]                           ^
#16 6.994     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.994     [javac]       if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 6.994     [javac]                 ^
#16 6.994     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.994     [javac]     if (reader.getCoreMetadataList().size() > 1) return 0;
#16 6.994     [javac]               ^
#16 6.994     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.994     [javac]       r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 6.994     [javac]                            ^
#16 7.095     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.095     [javac]     int seriesCount = unwrap().getCoreMetadataList().size();
#16 7.095     [javac]                               ^
#16 7.195     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.195     [javac]     BitWriter out = new BitWriter();
#16 7.195     [javac]     ^
#16 7.195     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.195     [javac]     BitWriter out = new BitWriter();
#16 7.195     [javac]                         ^
#16 8.096     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.096     [javac]       OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 8.096     [javac]                                                                    ^
#16 8.096     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 8.096     [javac]     StreamTokenizer st = new StreamTokenizer(in);
#16 8.096     [javac]                          ^
#16 8.297     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.297     [javac]     core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 8.297     [javac]                                                    ^
#16 8.297     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.297     [javac]   protected ReflectedUniverse r;
#16 8.297     [javac]             ^
#16 8.297     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.297     [javac]       r = new ReflectedUniverse();
#16 8.297     [javac]               ^
#16 8.297     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 8.297     [javac]           wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 8.297     [javac]                                                                               ^
#16 8.297     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 8.297     [javac]           sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 8.297     [javac]                                                                                ^
#16 8.297     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 8.297     [javac]         String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 8.297     [javac]                                                                                   ^
#16 8.297     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 8.297     [javac]         String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 8.297     [javac]                                                                                   ^
#16 8.297     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 8.297     [javac]         volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 8.297     [javac]                                                                                        ^
#16 8.297     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 8.297     [javac]         volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 8.297     [javac]                                                                                         ^
#16 8.297     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 8.297     [javac]         volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 8.297     [javac]                                                                                        ^
#16 8.297     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 8.297     [javac]             offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 8.298     [javac]                                                                                                               ^
#16 8.298     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 8.298     [javac]             offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 8.298     [javac]                                                                                                               ^
#16 8.398     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 8.398     [javac]       libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 8.398     [javac]                                        ^
#16 8.498     [javac] Note: Some input files use unchecked or unsafe operations.
#16 8.498     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 8.498     [javac] 38 warnings
#16 8.512 
#16 8.512 formats-bsd.jar:
#16 8.522       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 8.645 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 8.649 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 8.652 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 8.654 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 8.656 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 8.657 
#16 8.657 deps-formats-gpl:
#16 8.657 
#16 8.657 jar-formats-gpl:
#16 8.756      [echo] isSnapshot = true
#16 8.933 
#16 8.933 init-title:
#16 8.933      [echo] ----------=========== formats-gpl ===========----------
#16 8.933 
#16 8.933 init-timestamp:
#16 8.933 
#16 8.933 init:
#16 8.933 
#16 8.933 copy-resources:
#16 8.934     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 8.935      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 8.936 
#16 8.936 compile:
#16 9.413 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 9.866 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.37 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.38 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.63 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.75 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.81 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.06 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.18 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.28 [resolver:resolve] Resolving artifacts
#16 11.28 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 11.29 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 11.55 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 11.55 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 11.90 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 11.90 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 11.92     [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 13.03     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.03     [javac] import loci.formats.codec.BitWriter;
#16 13.03     [javac]                          ^
#16 13.03     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.03     [javac] import loci.formats.codec.BitWriter;
#16 13.03     [javac]                          ^
#16 14.73     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 14.73     [javac]       LOGGER.trace("Parsing tokens: {}", tokens);
#16 14.73     [javac]                                          ^
#16 14.73     [javac]   cast to Object for a varargs call
#16 14.73     [javac]   cast to Object[] for a non-varargs call and to suppress this warning
#16 14.73     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.73     [javac]     BitWriter bits = null;
#16 14.73     [javac]     ^
#16 14.73     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.73     [javac]       bits = new BitWriter(planes[index].length / 8);
#16 14.73     [javac]                  ^
#16 15.03     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 15.03     [javac]     CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 15.03     [javac]                                                    ^
#16 15.43     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#16 15.43     [javac]       store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#16 15.43     [javac]                                   ^
#16 15.43     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#16 15.43     [javac]       AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#16 15.43     [javac]                              ^
#16 15.43     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.43     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.43     [javac]     ^
#16 15.43     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.43     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.43     [javac]                          ^
#16 15.69     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 15.69     [javac]     Variable variable = group.findVariable(variableName);
#16 15.69     [javac]                              ^
#16 15.69     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 15.69     [javac]     Variable variable = group.findVariable(variableName);
#16 15.69     [javac]                              ^
#16 15.69     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 15.69     [javac]       List<Attribute> attributes = variable.getAttributes();
#16 15.69     [javac]                                            ^
#16 15.69     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.69     [javac]       String groupName = group.getName();
#16 15.69     [javac]                               ^
#16 15.69     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 15.69     [javac]       List<Attribute> attributes = group.getAttributes();
#16 15.69     [javac]                                         ^
#16 15.69     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.69     [javac]         String variableName = variable.getName();
#16 15.69     [javac]                                       ^
#16 15.69     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 15.69     [javac]       Group nextParent = parent.findGroup(token);
#16 15.69     [javac]                                ^
#16 15.69     [javac] Note: Some input files use unchecked or unsafe operations.
#16 15.69     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 15.69     [javac] 17 warnings
#16 15.70 
#16 15.70 formats-gpl.jar:
#16 15.71       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 15.85 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 15.86 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 15.86 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 15.86 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 15.87 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 15.87 
#16 15.87 deps-bio-formats-plugins:
#16 15.87 
#16 15.87 jar-bio-formats-plugins:
#16 15.97      [echo] isSnapshot = true
#16 16.14 
#16 16.14 init-title:
#16 16.14      [echo] ----------=========== bio-formats_plugins ===========----------
#16 16.14 
#16 16.14 init-timestamp:
#16 16.14 
#16 16.14 init:
#16 16.14 
#16 16.14 copy-resources:
#16 16.14     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.14      [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.15 
#16 16.15 compile:
#16 16.39 [resolver:resolve] Resolving artifacts
#16 16.40     [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.21     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.21     [javac] import loci.common.ReflectedUniverse;
#16 17.21     [javac]                   ^
#16 17.21     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.21     [javac] import loci.common.ReflectedUniverse;
#16 17.21     [javac]                   ^
#16 17.61     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 17.61     [javac]     "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 17.61     [javac]                                      ^
#16 17.71     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.71     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 17.71     [javac]         ^
#16 17.71     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.71     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 17.71     [javac]                                   ^
#16 17.81     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.81     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 17.81     [javac]     ^
#16 17.81     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.81     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 17.81     [javac]                                ^
#16 18.11     [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 18.11     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.11     [javac] 7 warnings
#16 18.13 
#16 18.13 bio-formats-plugins.jar:
#16 18.13       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 18.16 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 18.16 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 18.23 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 18.23 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 18.23 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 18.23 
#16 18.23 deps-bio-formats-tools:
#16 18.23 
#16 18.23 jar-bio-formats-tools:
#16 18.33      [echo] isSnapshot = true
#16 18.50 
#16 18.50 init-title:
#16 18.50      [echo] ----------=========== bio-formats-tools ===========----------
#16 18.50 
#16 18.50 init-timestamp:
#16 18.50 
#16 18.50 init:
#16 18.50 
#16 18.50 copy-resources:
#16 18.50     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 18.50 
#16 18.50 compile:
#16 18.74 [resolver:resolve] Resolving artifacts
#16 18.75     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.78 
#16 19.78 bio-formats-tools.jar:
#16 19.78       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 19.79 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 19.79 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 19.80 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 19.80 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 19.80 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 19.80 
#16 19.80 deps-tests:
#16 19.80 
#16 19.80 jar-tests:
#16 19.90      [echo] isSnapshot = true
#16 20.06 
#16 20.06 init-title:
#16 20.06      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 20.06 
#16 20.06 init-timestamp:
#16 20.06 
#16 20.06 init:
#16 20.06 
#16 20.06 copy-resources:
#16 20.06     [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 20.06 
#16 20.06 compile:
#16 20.37 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.46 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.82 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.84 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.48 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.93 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 21.96 [resolver:resolve] Resolving artifacts
#16 21.97 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.03 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.38 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.39 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.80 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.16 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 23.17     [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 24.09     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.09     [javac]         int index = unflattenedReader.getCoreIndex();
#16 24.09     [javac]                                      ^
#16 24.09     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 24.09     [javac]         reader.setCoreIndex(index);
#16 24.09     [javac]               ^
#16 24.29     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.29     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 24.29     [javac]                                              ^
#16 24.29     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.29     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 24.29     [javac]                                              ^
#16 24.49     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.49     [javac]         FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 24.49     [javac]                                                    ^
#16 24.49     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.49     [javac]         FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 24.49     [javac]                                                    ^
#16 24.49     [javac] Note: Some input files use unchecked or unsafe operations.
#16 24.49     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 24.49     [javac] 6 warnings
#16 24.51 
#16 24.51 tests.jar:
#16 24.51       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 24.53 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 24.53 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 24.54 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 24.54 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 24.54 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 24.54 
#16 24.54 jars:
#16 24.54 
#16 24.54 copy-jars:
#16 24.54 
#16 24.54 deps-formats-api:
#16 24.59      [echo] isSnapshot = true
#16 24.64 
#16 24.64 install-pom:
#16 24.81 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 24.81 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 24.81 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 24.82 
#16 24.82 jar-formats-api:
#16 24.91      [echo] isSnapshot = true
#16 25.07 
#16 25.07 init-title:
#16 25.07      [echo] ----------=========== formats-api ===========----------
#16 25.07 
#16 25.07 init-timestamp:
#16 25.07 
#16 25.07 init:
#16 25.07 
#16 25.07 copy-resources:
#16 25.07 
#16 25.07 compile:
#16 25.22 [resolver:resolve] Resolving artifacts
#16 25.23 
#16 25.23 formats-api.jar:
#16 25.25 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 25.25 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 25.25 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 25.25 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 25.26 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 25.26 
#16 25.26 deps-turbojpeg:
#16 25.26 
#16 25.26 jar-turbojpeg:
#16 25.51      [echo] isSnapshot = true
#16 25.68 
#16 25.68 init-title:
#16 25.68      [echo] ----------=========== turbojpeg ===========----------
#16 25.69 
#16 25.69 init-timestamp:
#16 25.69 
#16 25.69 init:
#16 25.69 
#16 25.69 copy-resources:
#16 25.69 
#16 25.69 compile:
#16 25.70 [resolver:resolve] Resolving artifacts
#16 25.70 
#16 25.70 jar:
#16 25.71 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 25.71 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 25.72 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 25.72 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 25.72 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 25.72 
#16 25.72 deps-formats-bsd:
#16 25.72 
#16 25.72 jar-formats-bsd:
#16 25.81      [echo] isSnapshot = true
#16 25.97 
#16 25.97 init-title:
#16 25.97      [echo] ----------=========== formats-bsd ===========----------
#16 25.97 
#16 25.97 init-timestamp:
#16 25.97 
#16 25.97 init:
#16 25.97 
#16 25.97 copy-resources:
#16 25.98 
#16 25.98 compile:
#16 26.16 [resolver:resolve] Resolving artifacts
#16 26.18 
#16 26.18 formats-bsd.jar:
#16 26.21 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 26.22 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 26.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 26.22 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 26.22 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 26.22 
#16 26.22 deps-formats-gpl:
#16 26.22 
#16 26.22 jar-formats-gpl:
#16 26.31      [echo] isSnapshot = true
#16 26.48 
#16 26.48 init-title:
#16 26.48      [echo] ----------=========== formats-gpl ===========----------
#16 26.48 
#16 26.48 init-timestamp:
#16 26.48 
#16 26.48 init:
#16 26.48 
#16 26.48 copy-resources:
#16 26.49 
#16 26.49 compile:
#16 26.72 [resolver:resolve] Resolving artifacts
#16 26.74 
#16 26.74 formats-gpl.jar:
#16 26.78 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 26.78 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 26.78 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 26.79 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 26.79 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 26.79 
#16 26.79 deps-bio-formats-plugins:
#16 26.79 
#16 26.79 jar-bio-formats-plugins:
#16 26.88      [echo] isSnapshot = true
#16 27.04 
#16 27.04 init-title:
#16 27.04      [echo] ----------=========== bio-formats_plugins ===========----------
#16 27.04 
#16 27.04 init-timestamp:
#16 27.04 
#16 27.04 init:
#16 27.04 
#16 27.04 copy-resources:
#16 27.04 
#16 27.04 compile:
#16 27.28 [resolver:resolve] Resolving artifacts
#16 27.29 
#16 27.29 bio-formats-plugins.jar:
#16 27.31 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 27.31 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 27.31 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 27.32 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 27.32 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 27.32 
#16 27.32 deps-bio-formats-tools:
#16 27.32 
#16 27.32 jar-bio-formats-tools:
#16 27.41      [echo] isSnapshot = true
#16 27.58 
#16 27.58 init-title:
#16 27.58      [echo] ----------=========== bio-formats-tools ===========----------
#16 27.58 
#16 27.58 init-timestamp:
#16 27.58 
#16 27.58 init:
#16 27.58 
#16 27.58 copy-resources:
#16 27.59 
#16 27.59 compile:
#16 27.83 [resolver:resolve] Resolving artifacts
#16 27.84 
#16 27.84 bio-formats-tools.jar:
#16 27.85 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 27.85 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 27.86 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 27.86 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 27.86 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 27.86 
#16 27.86 deps-tests:
#16 27.86 
#16 27.86 jar-tests:
#16 27.95      [echo] isSnapshot = true
#16 28.12 
#16 28.12 init-title:
#16 28.12      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 28.12 
#16 28.12 init-timestamp:
#16 28.12 
#16 28.12 init:
#16 28.12 
#16 28.12 copy-resources:
#16 28.12 
#16 28.12 compile:
#16 28.37 [resolver:resolve] Resolving artifacts
#16 28.39 
#16 28.39 tests.jar:
#16 28.40 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 28.41 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 28.41 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 28.41 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 28.41 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.41 
#16 28.41 jars:
#16 28.41 
#16 28.41 tools:
#16 28.41      [echo] ----------=========== bioformats_package ===========----------
#16 28.51      [echo] isSnapshot = true
#16 28.67 
#16 28.67 init-timestamp:
#16 28.67 
#16 28.67 bundle:
#16 28.92 [resolver:resolve] Resolving artifacts
#16 28.93     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.96     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.1.1-SNAPSHOT/ome-common-6.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.98     [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.00     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.01     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.06     [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.08     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.12     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.13     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.34     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.41     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.43     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.48     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.49     [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.50     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.50     [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.65     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.09     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.09     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.09     [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.10     [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.17     [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.17     [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.18     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.1-SNAPSHOT/ome-xml-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.23     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.1-SNAPSHOT/specification-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.28     [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.29     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.2-SNAPSHOT/ome-codecs-1.1.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.30     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.48     [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.54     [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.58     [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.59     [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.67     [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.69     [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.10     [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.12     [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.15     [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.24     [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.26     [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.27     [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.28     [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.48     [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.63     [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.74     [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.83     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.84     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.88     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.99     [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.00     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.42     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.43     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.53     [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.58     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.59     [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.60     [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.65     [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.68     [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.02     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.04     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.04     [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.05     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.06     [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.08     [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.43     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.52     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.89       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 40.68    [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 41.30 [resolver:install] Using default POM (ome:bioformats_package:8.4.0-SNAPSHOT)
#16 41.31 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.pom
#16 41.31 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.jar
#16 41.42 [resolver:install] Installing ome:bioformats_package:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 41.42 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 41.43 
#16 41.43 BUILD SUCCESSFUL
#16 41.43 Total time: 40 seconds
#16 DONE 42.4s

#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.1s

#18 exporting to image
#18 exporting layers
#18 exporting layers 4.1s done
#18 writing image sha256:dbe28d16669bd9b05360369ce64f7c40719ff991419aa94d1ddbabea281a84c9 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 4.1s

 [33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS