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Started by upstream project "BIOFORMATS-test-repo" build number 399 originally caused by: Started by upstream project "Trigger" build number 485 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins9856170999927380980.sh + '[' cellr = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_63112_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 12:02:14,279 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 12:02:14,281 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 12:02:14,281 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:02:14,282 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:02:14,282 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 12:02:14,282 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 12:02:14,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 12:02:14,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:02:14,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:02:14,283 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 12:02:14,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 12:02:14,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 12:02:14,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 12:02:14,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 12:02:14,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 12:02:14,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 12:02:14,523 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 12:02:14,523 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 12:02:14,523 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 12:02:14,524 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 12:02:14,524 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 12:02:14,525 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 12:02:14,525 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 242 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-19 12:02:14,534] [main] java.version = 1.8.0_342 [testng] 12:02:14,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 12:02:14,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:02:14,580 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-19_12-02-14.log] [testng] 12:02:14,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-19 12:02:14,583] [main] testng.directory = /data [testng] [2025-05-19 12:02:14,583] [main] testng.configDirectory = /config [testng] [2025-05-19 12:02:14,594] [main] testng.multiplier = 1.0 [testng] [2025-05-19 12:02:14,594] [main] testng.in-memory = false [testng] [2025-05-19 12:02:14,594] [main] testng.allow-missing = false [testng] [2025-05-19 12:02:14,594] [main] user.language = fr [testng] [2025-05-19 12:02:14,594] [main] user.country = FR [testng] [2025-05-19 12:02:14,595] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-19 12:12:27,091] [main] ---------------------------------------- [testng] [2025-05-19 12:12:27,091] [main] Total files: 256 [testng] [2025-05-19 12:12:27,091] [main] Scan time: 612.496 s (2392 ms/file) [testng] [2025-05-19 12:12:27,091] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-19 12:58:36,451] [pool-1-thread-1] Initializing /data/colin/07-06-21/07-06-21_d.mtb: [testng] 12:58:36,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 12:58:36,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:58:36,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-19_12-58-36.log] [testng] 12:58:36,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60855000 - End of configuration. [testng] [2025-05-19 12:58:48,708] [pool-1-thread-12] Initializing /data/viktorie/090902/090902_d.mtb: [testng] 12:58:48,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 12:58:48,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:58:48,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-19_12-58-48.log] [testng] 12:58:48,709 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77ebd848 - End of configuration. [testng] [2025-05-19 12:59:02,764] [pool-1-thread-11] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb: [testng] 12:59:02,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 12:59:02,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:59:02,765 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-19_12-59-02.log] [testng] 12:59:02,765 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77172590 - End of configuration. [testng] [2025-05-19 12:59:17,080] [pool-1-thread-10] Initializing /data/viktorie/2Channels.tif: [testng] 12:59:17,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 12:59:17,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:59:17,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-19_12-59-17.log] [testng] 12:59:17,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d7a8c8b - End of configuration. [testng] [2025-05-19 12:59:50,914] [pool-1-thread-9] Initializing /data/colin/08-10-09/08-10-09_d.mtb: [testng] 12:59:50,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 12:59:50,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:59:50,915 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-19_12-59-50.log] [testng] 12:59:50,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e95c853 - End of configuration. [testng] [2025-05-19 13:00:03,891] [pool-1-thread-8] Initializing /data/qa-17107/example2/example2_d.mtb: [testng] 13:00:03,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:00:03,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:03,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-19_13-00-03.log] [testng] 13:00:03,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bb34627 - End of configuration. [testng] [2025-05-19 13:00:15,571] [pool-1-thread-7] Initializing /data/clare/set_27_on_d.mtb: [testng] 13:00:15,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:00:15,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:15,571 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-19_13-00-15.log] [testng] 13:00:15,572 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a97d17d - End of configuration. [testng] [2025-05-19 13:00:25,747] [pool-1-thread-6] Initializing /data/qa-17107/plain/Plain_d.mtb: [testng] 13:00:25,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:00:25,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:25,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-19_13-00-25.log] [testng] 13:00:25,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14a5d2df - End of configuration. [testng] [2025-05-19 13:00:37,359] [pool-1-thread-5] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb: [testng] 13:00:37,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:00:37,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:37,360 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-19_13-00-37.log] [testng] 13:00:37,360 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e56f9b4 - End of configuration. [testng] [2025-05-19 13:00:50,746] [pool-1-thread-4] Initializing /data/kees/Mariaelena_d.mtb: [testng] 13:00:50,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:00:50,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:00:50,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-19_13-00-50.log] [testng] 13:00:50,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52f6b7b - End of configuration. [testng] [2025-05-19 13:01:15,273] [pool-1-thread-3] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb: [testng] 13:01:15,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:01:15,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:15,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-19_13-01-15.log] [testng] 13:01:15,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cd28f81 - End of configuration. [testng] [2025-05-19 13:01:30,073] [pool-1-thread-2] Initializing /data/viktorie/Structure.jpg: [testng] 13:01:30,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:01:30,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:01:30,074 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-19_13-01-30.log] [testng] 13:01:30,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bdcba0b - End of configuration. [testng] [2025-05-19 13:02:25,196] [pool-1-thread-2] Initializing /data/viktorie/test/test_d.mtb: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 79 minutes 29 seconds Finished: SUCCESS