00:44:42Started by upstream project "Trigger" build number 62000:44:42originally caused by:
00:44:42 Started by timer
00:44:42Running as SYSTEM
00:44:42Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:44:42The recommended git tool is: NONE
00:44:42No credentials specified
00:44:42 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:44:42Fetching changes from the remote Git repository
00:44:42 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:44:42Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:44:42 > git --version # timeout=10
00:44:42 > git --version # 'git version 2.43.5'
00:44:42 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:44:43 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:44:43Checking out Revision 76fef64a8fcda08ebef2d653b6358c197da59cbc (origin/merge_ci)
00:44:43 > git config core.sparsecheckout # timeout=10
00:44:43 > git checkout -f 76fef64a8fcda08ebef2d653b6358c197da59cbc # timeout=10
00:44:43Commit message: "Add version.properties to etc/omero.properties"
00:44:43 > git rev-list --no-walk 6eb3d5e955ef7e6487b32f71a7a7c089cb8f9b23 # timeout=10
00:44:43Cleaning workspace
00:44:43 > git rev-parse --verify HEAD # timeout=10
00:44:43Resetting working tree
00:44:43 > git reset --hard # timeout=10
00:44:43 > git clean -fdx # timeout=10
00:44:43Copied 6 artifacts from "OMERO-python-superbuild-build" build number 51700:44:43[OMERO-build] $ /bin/bash -xe /tmp/jenkins5234099694700945002.sh
00:44:43+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
00:44:43+ cd src
00:44:43+ export OMERO_BRANCH=merge_ci
00:44:43+ OMERO_BRANCH=merge_ci
00:44:43+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:44:43+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:44:43+ source /home/omero/settings.env
00:44:43++ OMERO_DB_HOST=pg
00:44:43++ OMERO_DB_USER=postgres
00:44:43++ OMERO_DB_PASS=
00:44:43++ OMERO_ROOT_PASS=omero
00:44:43++ OMERO_DATA_DIR=/OMERO
00:44:43++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:44:43+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:44:47+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:44:47Collecting zeroc-ice==3.6.5
00:44:48 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:44:50 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 7.4 MB/s eta 0:00:00
00:44:50Installing collected packages: zeroc-ice
00:44:51Successfully installed zeroc-ice-3.6.5
00:44:5100:44:51[notice] A new release of pip available: 22.3.1 -> 25.2
00:44:51[notice] To update, run: python3.11 -m pip install --upgrade pip
00:44:51+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:44:52Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:44:52Collecting setuptools<66
00:44:52 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:44:52Collecting omero-py
00:44:52 Using cached omero_py-5.21.1-py3-none-any.whl (2.8 MB)
00:44:52Collecting appdirs
00:44:52 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:44:52Collecting future
00:44:52 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:44:53Collecting numpy<3
00:44:53 Using cached numpy-2.3.3-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:44:53Collecting Pillow>=10.0.0
00:44:53 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
00:44:53Collecting PyYAML
00:44:53 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:44:53Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:44:53Collecting requests
00:44:53 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:44:53Collecting portalocker
00:44:53 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:44:54Collecting charset_normalizer<4,>=2
00:44:54 Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB)
00:44:54Collecting idna<4,>=2.5
00:44:54 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:44:54Collecting urllib3<3,>=1.21.1
00:44:54 Using cached urllib3-2.5.0-py3-none-any.whl (129 kB)
00:44:54Collecting certifi>=2017.4.17
00:44:54 Using cached certifi-2025.8.3-py3-none-any.whl (161 kB)
00:44:54Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:44:54 Attempting uninstall: setuptools
00:44:54 Found existing installation: setuptools 65.5.1
00:44:54 Uninstalling setuptools-65.5.1:
00:44:54 Successfully uninstalled setuptools-65.5.1
00:45:00Successfully installed Pillow-11.3.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.8.3 charset_normalizer-3.4.3 future-1.0.0 idna-3.10 numpy-2.3.3 omero-py-5.21.1 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.5.0
00:45:0000:45:00[notice] A new release of pip available: 22.3.1 -> 25.2
00:45:00[notice] To update, run: python3.11 -m pip install --upgrade pip
00:45:00+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:45:00++ deactivate nondestructive
00:45:00++ '[' -n '' ']'
00:45:00++ '[' -n '' ']'
00:45:00++ hash -r
00:45:00++ '[' -n '' ']'
00:45:00++ unset VIRTUAL_ENV
00:45:00++ unset VIRTUAL_ENV_PROMPT
00:45:00++ '[' '!' nondestructive = nondestructive ']'
00:45:00++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:45:00++ export VIRTUAL_ENV
00:45:00++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:00++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:00++ export PATH
00:45:00++ '[' -n '' ']'
00:45:00++ '[' -z '' ']'
00:45:00++ _OLD_VIRTUAL_PS1=
00:45:00++ PS1='(omero-virtualenv) '
00:45:00++ export PS1
00:45:00++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:45:00++ export VIRTUAL_ENV_PROMPT
00:45:00++ hash -r
00:45:00+ source docs/hudson/OMERO.sh
00:45:00++ set -e
00:45:00++ set -u
00:45:00++ set -x
00:45:00++ source docs/hudson/functions.sh
00:45:00++ echo Building merge_ci
00:45:00Building merge_ci
00:45:00++ python3 ./build.py build-dev release-all
00:45:00Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:45:0000:45:00check-ivy:
00:45:00Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:45:00Created dir: /home/omero/workspace/OMERO-build/src/target
00:45:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:45:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:45:0100:45:01build-scons:
00:45:01Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:45:01No sub-builds to iterate on
00:45:01Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:45:0200:45:02buildlist:
00:45:02:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:45:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:45:0200:45:02clean:
00:45:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:45:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:45:0200:45:02python-clean:
00:45:02WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:45:02/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-76fef64a8f-ice36-b524') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:45:02 warnings.warn(
00:45:02running clean
00:45:02Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:45:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:45:0200:45:02python-clean:
00:45:02WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:45:02/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-76fef64a8f-ice36-b524') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:45:02 warnings.warn(
00:45:02running clean
00:45:02Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:45:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:45:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:45:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:45:0300:45:03python-clean:
00:45:03WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:45:03/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-76fef64a8f-ice36-b524') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:45:03 warnings.warn(
00:45:03running clean
00:45:03Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:45:03Deleting directory /home/omero/workspace/OMERO-build/src/target
00:45:0300:45:03build-scons:
00:45:03Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:45:0300:45:03build:
00:45:03No sub-builds to iterate on
00:45:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:45:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:45:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:45:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:45:0300:45:03tools-init:
00:45:03no-op
00:45:0400:45:04retrieve:
00:45:04:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:45:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:45:04WARNING: An illegal reflective access operation has occurred
00:45:04WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:45:04WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:45:04WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:45:04WARNING: All illegal access operations will be denied in a future release
00:45:1700:45:17prepare:
00:45:17Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:45:17Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:45:17Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:45:17Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:45:17Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:45:17Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:45:17Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:45:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:45:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:45:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:45:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:45:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:45:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:45:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:45:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:45:1700:45:17pre-compile:
00:45:17Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:45:17Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:45:17Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:45:18Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:45:18Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:45:1800:45:18compile:
00:45:18no-op
00:45:1800:45:18package:
00:45:18Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:45:1800:45:18install:
00:45:18:: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-574-76fef64a8f-ice36-b524 :: integration :: Tue Sep 16 00:45:03 UTC 2025
00:45:18 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:45:18:: publishing :: omero#omero_client
00:45:18 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-76fef64a8f-ice36-b524/omero_client-5.6.3-574-76fef64a8f-ice36-b524.jar
00:45:18 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-76fef64a8f-ice36-b524/omero_client-5.6.3-574-76fef64a8f-ice36-b524.xml
00:45:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:45:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:45:1900:45:19retrieve:
00:45:19:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:45:19:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:45:19Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:45:1900:45:19dist:
00:45:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:45:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:45:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:45:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:45:19Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:45:19Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:45:19Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:45:19Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:45:19Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:45:1900:45:19copy-licenses:
00:45:19Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:45:19Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:45:19Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:45:1900:45:19copy-history:
00:45:19Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:45:1900:45:19copy-etc:
00:45:19Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:45:19Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:45:1900:45:19copy-sql:
00:45:19Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:45:2300:45:23copy-server:
00:45:23 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:45:2400:45:24copy-client:
00:45:24Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:45:25 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:45:2500:45:25update-version:
00:45:25Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:45:2500:45:25create-workdirs:
00:45:25Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:45:25Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:45:2500:45:25copy-luts:
00:45:25Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:45:25Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:45:2500:45:25test-compile:
00:45:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:45:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:45:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:45:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:45:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:45:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:45:25Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:45:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:45:2600:45:26testng-init:
00:45:26:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:45:26:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:45:2800:45:28,474 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
00:45:2800:45:28,477 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6d2c5e02 - No custom configurators were discovered as a service.
00:45:2800:45:28,477 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6d2c5e02 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:45:2800:45:28,480 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6d2c5e02 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:45:2800:45:28,481 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:45:2800:45:28,481 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:45:2800:45:28,482 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6d2c5e02 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:45:2800:45:28,482 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6d2c5e02 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:45:2800:45:28,484 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6d2c5e02 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:45:2800:45:28,484 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:45:2800:45:28,484 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:45:2800:45:28,485 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@474998da - Resource [logback.xml] occurs multiple times on the classpath.
00:45:2800:45:28,485 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@474998da - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:45:2800:45:28,485 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@474998da - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:45:2800:45:28,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:45:2800:45:28,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:45:2800:45:28,702 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:45:2800:45:28,704 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@31b5db46 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:45:2800:45:28,704 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@31b5db46 - Please move "immediateFlush" property into the enclosing appender.
00:45:2800:45:28,765 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@31b5db46 - Setting the "immediateFlush" property of the enclosing appender to true
00:45:2800:45:28,766 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:45:2800:45:28,766 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:45:2800:45:28,766 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:45:2800:45:28,766 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:45:2800:45:28,766 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:45:2800:45:28,766 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:45:2800:45:28,767 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@78026a45 - End of configuration.
00:45:2800:45:28,769 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@77d1e709 - Registering current configuration as safe fallback point
00:45:2800:45:28,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6d2c5e02 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 285 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:45:2800:45:28lifecycle.test-compile:
00:45:28Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:45:28Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:45:29warning: [options] bootstrap class path not set in conjunction with -source 8
00:45:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:45:30import omero.grid.RawAccessRequest;
00:45:30 ^
00:45:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:45:30import omero.grid.RawAccessRequest;
00:45:30 ^
00:45:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:45:30import omero.grid.RawAccessRequest;
00:45:30 ^
00:45:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:45:30import omero.model.ImportJob;
00:45:30 ^
00:45:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:45:30import omero.model.ImportJobI;
00:45:30 ^
00:45:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:45:31 IObject link = (IObject) linkClass.newInstance();
00:45:31 ^
00:45:31 where T is a type-variable:
00:45:31 T extends Object declared in class Class
00:45:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:45:31 T copy = (T) obj.getClass().newInstance();
00:45:31 ^
00:45:31 where T is a type-variable:
00:45:31 T extends Object declared in class Class
00:45:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:45:31 RawAccessRequest raw = new RawAccessRequest();
00:45:31 ^
00:45:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:45:31 RawAccessRequest raw = new RawAccessRequest();
00:45:31 ^
00:45:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:45:31 raw.repoUuid = legacy.root().getHash().getValue();
00:45:31 ^
00:45:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:45:31 raw.command = "rm";
00:45:31 ^
00:45:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:45:31 raw.args = Arrays.asList(path);
00:45:31 ^
00:45:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:45:31 final IObject link = linkClass.newInstance();
00:45:31 ^
00:45:31 where T is a type-variable:
00:45:31 T extends Object declared in class Class
00:45:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:45:31 originalLink.setChild(annotationClass.newInstance());
00:45:31 ^
00:45:31 where T is a type-variable:
00:45:31 T extends Object declared in class Class
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:45:32 RoiResult r = svc.findByImage(id, new RoiOptions());
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:45:32 final RawAccessRequest request = new RawAccessRequest();
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:45:32 final RawAccessRequest request = new RawAccessRequest();
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:45:32 request.repoUuid = repo.root().getHash().getValue();
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:45:32 request.command = "exists";
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:45:32 request.args = Collections.singletonList(dirPath);
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:45:32 final RawAccessRequest request = new RawAccessRequest();
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:45:32 final RawAccessRequest request = new RawAccessRequest();
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:45:32 request.repoUuid = repo.root().getHash().getValue();
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:45:32 request.command = "exists";
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:45:32 request.args = Collections.singletonList(dirName);
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:45:32 final ImportJob importJob = new ImportJobI();
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:45:32 final ImportJob importJob = new ImportJobI();
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:45:32 importJob.setImageName(omero.rtypes.rstring(name));
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:45:32 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:45:32 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:45:32 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:45:32 final String savedName = sent.getImageName().getValue().toString();
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:45:32 final String savedDesc = sent.getImageDescription().getValue().toString();
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:45:32 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:45:32 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:45:32 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:45:32 ^
00:45:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:45:32 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:45:32 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:45:33 RoiResult r = svc.findByImage(image.getId().getValue(),
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:45:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:45:33 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:45:33 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:45:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:45:33 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:45:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:45:33 table = svc.getTable(f.getId().getValue());
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:45:33 RoiResult r = svc.findByImage(image.getId().getValue(),
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:45:33 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:45:33 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:45:33 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:45:33 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:45:33 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:45:33 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:45:33 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:45:33 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:45:33 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:45:33 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:45:33 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:45:33 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:45:33 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:45:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:45:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:45:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:45:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:45:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:45:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:45:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:45:33 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:45:33 svc.getShapeStatsRestricted(
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:45:33 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:45:33 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:45:33 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:45:33 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:45:33 request.typesToIgnore = Collections.singletonList("Annotation");
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:45:33 request.typesToIgnore = Collections.singletonList("Annotation");
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:45:33 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:45:33 p2.setRelatedTo(p1);
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:45:33 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:45:33 pixels1.setRelatedTo(pixels2);
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:45:33 Pixels pixels = pixels1.getRelatedTo();
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:45:33 Assert.assertNull(pixels1.getRelatedTo());
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:45:33 pixels1.setRelatedTo(pixels2);
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:45:33 Pixels pixels = pixels1.getRelatedTo();
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:45:33 Assert.assertNull(pixels1.getRelatedTo());
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:45:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:45:33 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:45:33 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:45:33 ^
00:45:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:45:33 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:45:33 ^
00:45:33Note: Some input files use unchecked or unsafe operations.
00:45:33Note: Recompile with -Xlint:unchecked for details.
00:45:3388 warnings
00:45:33Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1941322531.tmp
00:45:33Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:45:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:45:33:: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-574-76fef64a8f-ice36-b524 :: integration :: Tue Sep 16 00:45:25 UTC 2025
00:45:33 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:45:33:: publishing :: omero#OmeroJava-test
00:45:33 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-76fef64a8f-ice36-b524.jar
00:45:33 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-76fef64a8f-ice36-b524.xml
00:45:3300:45:33build-eclipse:
00:45:33No sub-builds to iterate on
00:45:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:45:3400:45:34retrieve:
00:45:34:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:45:34:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:45:3600:45:36prepare:
00:45:36Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:45:3700:45:37release-clients:
00:45:37Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-574-76fef64a8f-ice36-b524.zip
00:45:4300:45:43release-zip:
00:45:43Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-574-76fef64a8f-ice36-b524.zip
00:45:5400:45:54BUILD SUCCESSFUL
00:45:54Total time: 53 seconds
00:45:54++ '[' -d .git ']'
00:45:54++ python3 ./build.py release-src
00:45:54Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:45:5400:45:54release-src-git:
00:45:54Releasing openmicroscopy-5.6.3-574-76fef64a8f-ice36-b524
00:45:56 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-76fef64a8f-ice36-b524.zip
00:45:56 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-76fef64a8f-ice36-b524-base.zip
00:45:5700:45:57BUILD SUCCESSFUL
00:45:57Total time: 3 seconds
00:45:57++ echo BUILD_NUMBER=524
00:45:57++ echo OMERO_BRANCH=merge_ci
00:45:57++ git_info
00:45:57+++ git rev-parse HEAD
00:45:57++ HEAD=76fef64a8fcda08ebef2d653b6358c197da59cbc
00:45:57++ git log --max-count=1 76fef64a8fcda08ebef2d653b6358c197da59cbc
00:45:57++ env
00:45:57++ sort
00:45:57Archiving artifacts
00:46:22Finished: SUCCESS
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