06:00:26Started by upstream project "Trigger" build number 60806:00:26originally caused by:
06:00:26 Started by user devspace06:00:26Running as SYSTEM
06:00:26Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
06:00:26The recommended git tool is: NONE
06:00:26No credentials specified
06:00:26 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
06:00:26Fetching changes from the remote Git repository
06:00:26 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
06:00:26Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git06:00:26 > git --version # timeout=10
06:00:26 > git --version # 'git version 2.43.5'
06:00:26 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
06:00:27 > git rev-parse origin/merge_ci^{commit} # timeout=10
06:00:27Checking out Revision e93a5db71fa89e89b1b42bc4d7cedebf8b8f9afb (origin/merge_ci)
06:00:27 > git config core.sparsecheckout # timeout=10
06:00:27 > git checkout -f e93a5db71fa89e89b1b42bc4d7cedebf8b8f9afb # timeout=10
06:00:27Commit message: "Add version.properties to etc/omero.properties"
06:00:27 > git rev-list --no-walk 755981ab8b0240632c20992bf7bc4903bea87799 # timeout=10
06:00:27Cleaning workspace
06:00:27 > git rev-parse --verify HEAD # timeout=10
06:00:27Resetting working tree
06:00:27 > git reset --hard # timeout=10
06:00:27 > git clean -fdx # timeout=10
06:00:27Copied 6 artifacts from "OMERO-python-superbuild-build" build number 50806:00:30[OMERO-build] $ /bin/bash -xe /tmp/jenkins4763862505747748222.sh
06:00:30+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
06:00:30+ cd src
06:00:30+ export OMERO_BRANCH=merge_ci
06:00:30+ OMERO_BRANCH=merge_ci
06:00:30+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
06:00:30+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
06:00:30+ source /home/omero/settings.env
06:00:30++ OMERO_DB_HOST=pg
06:00:30++ OMERO_DB_USER=postgres
06:00:30++ OMERO_DB_PASS=
06:00:30++ OMERO_ROOT_PASS=omero
06:00:30++ OMERO_DATA_DIR=/OMERO
06:00:30++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
06:00:30+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
06:00:33+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl06:00:34Collecting zeroc-ice==3.6.5
06:00:34 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
06:00:37 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 10.8 MB/s eta 0:00:00
06:00:37Installing collected packages: zeroc-ice
06:00:38Successfully installed zeroc-ice-3.6.5
06:00:3806:00:38[notice] A new release of pip available: 22.3.1 -> 25.2
06:00:38[notice] To update, run: python3.11 -m pip install --upgrade pip
06:00:38+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
06:00:38Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
06:00:39Collecting setuptools<66
06:00:39 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
06:00:39Collecting omero-py
06:00:39 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB)
06:00:39Collecting urllib3<2
06:00:39 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
06:00:39Collecting appdirs
06:00:39 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
06:00:39Collecting future
06:00:39 Using cached future-1.0.0-py3-none-any.whl (491 kB)
06:00:39Collecting numpy<3
06:00:39 Using cached numpy-2.3.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
06:00:40Collecting Pillow>=10.0.0
06:00:40 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
06:00:40Collecting PyYAML
06:00:40 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
06:00:40Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
06:00:40Collecting requests
06:00:40 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
06:00:40Collecting portalocker
06:00:40 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
06:00:40Collecting charset_normalizer<4,>=2
06:00:40 Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB)
06:00:40Collecting idna<4,>=2.5
06:00:40 Using cached idna-3.10-py3-none-any.whl (70 kB)
06:00:40Collecting certifi>=2017.4.17
06:00:40 Using cached certifi-2025.8.3-py3-none-any.whl (161 kB)
06:00:41Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
06:00:41 Attempting uninstall: setuptools
06:00:41 Found existing installation: setuptools 65.5.1
06:00:41 Uninstalling setuptools-65.5.1:
06:00:41 Successfully uninstalled setuptools-65.5.1
06:00:46Successfully installed Pillow-11.3.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.8.3 charset_normalizer-3.4.3 future-1.0.0 idna-3.10 numpy-2.3.2 omero-py-5.21.0 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-1.26.20
06:00:4606:00:46[notice] A new release of pip available: 22.3.1 -> 25.2
06:00:46[notice] To update, run: python3.11 -m pip install --upgrade pip
06:00:47+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
06:00:47++ deactivate nondestructive
06:00:47++ '[' -n '' ']'
06:00:47++ '[' -n '' ']'
06:00:47++ hash -r
06:00:47++ '[' -n '' ']'
06:00:47++ unset VIRTUAL_ENV
06:00:47++ unset VIRTUAL_ENV_PROMPT
06:00:47++ '[' '!' nondestructive = nondestructive ']'
06:00:47++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
06:00:47++ export VIRTUAL_ENV
06:00:47++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:00:47++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
06:00:47++ export PATH
06:00:47++ '[' -n '' ']'
06:00:47++ '[' -z '' ']'
06:00:47++ _OLD_VIRTUAL_PS1=
06:00:47++ PS1='(omero-virtualenv) '
06:00:47++ export PS1
06:00:47++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
06:00:47++ export VIRTUAL_ENV_PROMPT
06:00:47++ hash -r
06:00:47+ source docs/hudson/OMERO.sh
06:00:47++ set -e
06:00:47++ set -u
06:00:47++ set -x
06:00:47++ source docs/hudson/functions.sh
06:00:47++ echo Building merge_ci
06:00:47Building merge_ci
06:00:47++ python3 ./build.py build-dev release-all
06:00:47Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
06:00:4706:00:47check-ivy:
06:00:47Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
06:00:47Created dir: /home/omero/workspace/OMERO-build/src/target
06:00:47:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:00:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:00:4806:00:48build-scons:
06:00:48Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
06:00:48No sub-builds to iterate on
06:00:48Entering /home/omero/workspace/OMERO-build/src/components/tools...
06:00:4806:00:48buildlist:
06:00:48:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:00:48:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:00:4806:00:48clean:
06:00:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:00:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:00:4906:00:49python-clean:
06:00:49WARNING: '' not a valid package name; please use only .-separated package names in setup.py
06:00:49/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-e93a5db71f-ice36-b515') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
06:00:49 warnings.warn(
06:00:49running clean
06:00:49Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
06:00:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
06:00:4906:00:49python-clean:
06:00:49WARNING: '' not a valid package name; please use only .-separated package names in setup.py
06:00:49/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-e93a5db71f-ice36-b515') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
06:00:49 warnings.warn(
06:00:49running clean
06:00:49Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
06:00:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:00:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:00:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:00:5006:00:50python-clean:
06:00:50WARNING: '' not a valid package name; please use only .-separated package names in setup.py
06:00:50/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-e93a5db71f-ice36-b515') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
06:00:50 warnings.warn(
06:00:50running clean
06:00:50Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
06:00:50Deleting directory /home/omero/workspace/OMERO-build/src/target
06:00:5006:00:50build-scons:
06:00:50Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
06:00:5006:00:50build:
06:00:50No sub-builds to iterate on
06:00:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:00:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:00:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
06:00:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:00:5006:00:50tools-init:
06:00:50no-op
06:00:5006:00:50retrieve:
06:00:50:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:00:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:00:53WARNING: An illegal reflective access operation has occurred
06:00:53WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
06:00:53WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
06:00:53WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
06:00:53WARNING: All illegal access operations will be denied in a future release
06:01:1906:01:19prepare:
06:01:19Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
06:01:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
06:01:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
06:01:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:01:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:01:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
06:01:19Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
06:01:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:01:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:01:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:01:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:01:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:01:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:01:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:01:19Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:01:1906:01:19pre-compile:
06:01:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:01:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:01:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:01:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:01:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:01:1906:01:19compile:
06:01:19no-op
06:01:1906:01:19package:
06:01:19Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
06:01:2006:01:20install:
06:01:20:: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-574-e93a5db71f-ice36-b515 :: integration :: Thu Sep 04 06:00:50 UTC 2025
06:01:20 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
06:01:20:: publishing :: omero#omero_client
06:01:20 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-e93a5db71f-ice36-b515/omero_client-5.6.3-574-e93a5db71f-ice36-b515.jar
06:01:20 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-e93a5db71f-ice36-b515/omero_client-5.6.3-574-e93a5db71f-ice36-b515.xml
06:01:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:01:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:01:2006:01:20retrieve:
06:01:20:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:01:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:01:20Entering /home/omero/workspace/OMERO-build/src/components/tools...
06:01:2006:01:20dist:
06:01:20Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
06:01:20Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
06:01:20Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
06:01:20Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
06:01:20Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
06:01:20Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
06:01:20Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
06:01:21Entering /home/omero/workspace/OMERO-build/src/components/tests...
06:01:21Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
06:01:2106:01:21copy-licenses:
06:01:21Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
06:01:21Created dir: /home/omero/workspace/OMERO-build/src/dist/share
06:01:21Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
06:01:2106:01:21copy-history:
06:01:21Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
06:01:2106:01:21copy-etc:
06:01:21Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
06:01:21Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
06:01:2106:01:21copy-sql:
06:01:21Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
06:01:2506:01:25copy-server:
06:01:25 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
06:01:2506:01:25copy-client:
06:01:25Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
06:01:26 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
06:01:2606:01:26update-version:
06:01:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
06:01:2606:01:26create-workdirs:
06:01:26Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
06:01:26Created dir: /home/omero/workspace/OMERO-build/src/dist/var
06:01:2606:01:26copy-luts:
06:01:26Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
06:01:26Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
06:01:2606:01:26test-compile:
06:01:26:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:01:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
06:01:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:01:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:01:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:01:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:01:26Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
06:01:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:01:2706:01:27testng-init:
06:01:27:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:01:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:01:2906:01:29,602 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
06:01:2906:01:29,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6d2c5e02 - No custom configurators were discovered as a service.
06:01:2906:01:29,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6d2c5e02 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
06:01:2906:01:29,607 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6d2c5e02 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
06:01:2906:01:29,608 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
06:01:2906:01:29,608 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
06:01:2906:01:29,609 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6d2c5e02 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
06:01:2906:01:29,609 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6d2c5e02 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
06:01:2906:01:29,610 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6d2c5e02 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
06:01:2906:01:29,611 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
06:01:2906:01:29,611 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
06:01:2906:01:29,612 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@474998da - Resource [logback.xml] occurs multiple times on the classpath.
06:01:2906:01:29,612 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@474998da - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
06:01:2906:01:29,612 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@474998da - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
06:01:2906:01:29,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
06:01:2906:01:29,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
06:01:2906:01:29,824 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
06:01:2906:01:29,825 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@31b5db46 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
06:01:2906:01:29,825 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@31b5db46 - Please move "immediateFlush" property into the enclosing appender.
06:01:2906:01:29,884 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@31b5db46 - Setting the "immediateFlush" property of the enclosing appender to true
06:01:2906:01:29,885 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
06:01:2906:01:29,885 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
06:01:2906:01:29,885 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
06:01:2906:01:29,885 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
06:01:2906:01:29,885 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
06:01:2906:01:29,885 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
06:01:2906:01:29,886 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@78026a45 - End of configuration.
06:01:2906:01:29,888 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@77d1e709 - Registering current configuration as safe fallback point
06:01:2906:01:29,888 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6d2c5e02 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 278 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
06:01:2906:01:29lifecycle.test-compile:
06:01:29Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
06:01:29Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
06:01:30warning: [options] bootstrap class path not set in conjunction with -source 8
06:01:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:01:31import omero.grid.RawAccessRequest;
06:01:31 ^
06:01:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:01:31import omero.grid.RawAccessRequest;
06:01:31 ^
06:01:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:01:31import omero.grid.RawAccessRequest;
06:01:31 ^
06:01:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
06:01:31import omero.model.ImportJob;
06:01:31 ^
06:01:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
06:01:31import omero.model.ImportJobI;
06:01:31 ^
06:01:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
06:01:32 IObject link = (IObject) linkClass.newInstance();
06:01:32 ^
06:01:32 where T is a type-variable:
06:01:32 T extends Object declared in class Class
06:01:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
06:01:32 T copy = (T) obj.getClass().newInstance();
06:01:32 ^
06:01:32 where T is a type-variable:
06:01:32 T extends Object declared in class Class
06:01:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:01:32 RawAccessRequest raw = new RawAccessRequest();
06:01:32 ^
06:01:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:01:32 RawAccessRequest raw = new RawAccessRequest();
06:01:32 ^
06:01:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
06:01:32 raw.repoUuid = legacy.root().getHash().getValue();
06:01:32 ^
06:01:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
06:01:32 raw.command = "rm";
06:01:32 ^
06:01:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
06:01:32 raw.args = Arrays.asList(path);
06:01:32 ^
06:01:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
06:01:32 final IObject link = linkClass.newInstance();
06:01:32 ^
06:01:32 where T is a type-variable:
06:01:32 T extends Object declared in class Class
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
06:01:33 originalLink.setChild(annotationClass.newInstance());
06:01:33 ^
06:01:33 where T is a type-variable:
06:01:33 T extends Object declared in class Class
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
06:01:33 RoiResult r = svc.findByImage(id, new RoiOptions());
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:01:33 final RawAccessRequest request = new RawAccessRequest();
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:01:33 final RawAccessRequest request = new RawAccessRequest();
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
06:01:33 request.repoUuid = repo.root().getHash().getValue();
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
06:01:33 request.command = "exists";
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
06:01:33 request.args = Collections.singletonList(dirPath);
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:01:33 final RawAccessRequest request = new RawAccessRequest();
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:01:33 final RawAccessRequest request = new RawAccessRequest();
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
06:01:33 request.repoUuid = repo.root().getHash().getValue();
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
06:01:33 request.command = "exists";
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
06:01:33 request.args = Collections.singletonList(dirName);
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
06:01:33 final ImportJob importJob = new ImportJobI();
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
06:01:33 final ImportJob importJob = new ImportJobI();
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
06:01:33 importJob.setImageName(omero.rtypes.rstring(name));
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
06:01:33 importJob.setImageDescription(omero.rtypes.rstring(desc));
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
06:01:33 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
06:01:33 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
06:01:33 final String savedName = sent.getImageName().getValue().toString();
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
06:01:33 final String savedDesc = sent.getImageDescription().getValue().toString();
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
06:01:33 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
06:01:33 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
06:01:33 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
06:01:33 ^
06:01:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
06:01:33 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
06:01:33 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
06:01:34 RoiResult r = svc.findByImage(image.getId().getValue(),
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:01:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:01:34 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:01:34 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:01:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
06:01:34 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:01:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
06:01:34 table = svc.getTable(f.getId().getValue());
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
06:01:34 RoiResult r = svc.findByImage(image.getId().getValue(),
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
06:01:34 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
06:01:34 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
06:01:34 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
06:01:34 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
06:01:34 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
06:01:34 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
06:01:34 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
06:01:34 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
06:01:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
06:01:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
06:01:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
06:01:34 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
06:01:34 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
06:01:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
06:01:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
06:01:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
06:01:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
06:01:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
06:01:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
06:01:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
06:01:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
06:01:34 svc.getShapeStatsRestricted(
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
06:01:34 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:01:34 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:01:34 request.typesToIgnore = Collections.singletonList("TagAnnotation");
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:01:34 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:01:34 request.typesToIgnore = Collections.singletonList("Annotation");
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:01:34 request.typesToIgnore = Collections.singletonList("Annotation");
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:01:34 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:01:34 p2.setRelatedTo(p1);
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:01:34 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:01:34 pixels1.setRelatedTo(pixels2);
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:01:34 Pixels pixels = pixels1.getRelatedTo();
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:01:34 Assert.assertNull(pixels1.getRelatedTo());
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:01:34 pixels1.setRelatedTo(pixels2);
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:01:34 Pixels pixels = pixels1.getRelatedTo();
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:01:34 Assert.assertNull(pixels1.getRelatedTo());
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:01:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:01:34 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:01:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:01:34 ^
06:01:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:01:34 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:01:34 ^
06:01:35Note: Some input files use unchecked or unsafe operations.
06:01:35Note: Recompile with -Xlint:unchecked for details.
06:01:3588 warnings
06:01:35Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1100670221.tmp
06:01:35Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
06:01:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:01:35:: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-574-e93a5db71f-ice36-b515 :: integration :: Thu Sep 04 06:01:26 UTC 2025
06:01:35 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
06:01:35:: publishing :: omero#OmeroJava-test
06:01:35 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-e93a5db71f-ice36-b515.jar
06:01:35 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-e93a5db71f-ice36-b515.xml
06:01:3506:01:35build-eclipse:
06:01:35No sub-builds to iterate on
06:01:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:01:3506:01:35retrieve:
06:01:35:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:01:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:01:3706:01:37prepare:
06:01:37Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
06:01:3806:01:38release-clients:
06:01:38Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-574-e93a5db71f-ice36-b515.zip
06:01:4406:01:44release-zip:
06:01:44Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-574-e93a5db71f-ice36-b515.zip
06:01:5506:01:55BUILD SUCCESSFUL
06:01:55Total time: 1 minute 8 seconds
06:01:55++ '[' -d .git ']'
06:01:55++ python3 ./build.py release-src
06:01:55Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
06:01:5606:01:56release-src-git:
06:01:56Releasing openmicroscopy-5.6.3-574-e93a5db71f-ice36-b515
06:01:57 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-e93a5db71f-ice36-b515.zip
06:01:57 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-e93a5db71f-ice36-b515-base.zip
06:01:5906:01:59BUILD SUCCESSFUL
06:01:59Total time: 3 seconds
06:01:59++ echo BUILD_NUMBER=515
06:01:59++ echo OMERO_BRANCH=merge_ci
06:01:59++ git_info
06:01:59+++ git rev-parse HEAD
06:01:59++ HEAD=e93a5db71fa89e89b1b42bc4d7cedebf8b8f9afb
06:01:59++ git log --max-count=1 e93a5db71fa89e89b1b42bc4d7cedebf8b8f9afb
06:01:59++ env
06:01:59++ sort
06:01:59Archiving artifacts
06:02:23Finished: SUCCESS
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