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+ export BASE_REPO=omero-matlab.git
+ BASE_REPO=omero-matlab.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-matlab-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-matlab-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-matlab-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-matlab-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2025-07-14 00:44:16,542 [  scc.config] DEBUG Found github.token
2025-07-14 00:44:16,543 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:16,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-14 00:44:16,982 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:17,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-14 00:44:17,409 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:17,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2025-07-14 00:44:17,572 [      scc.gh] DEBUG 2921 remaining from 5000 (Reset at 00:07
2025-07-14 00:44:17,572 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-07-14 00:44:17,575 [     scc.git] DEBUG Check current status
2025-07-14 00:44:17,575 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-07-14 00:44:17,577 [     scc.git] DEBUG 7d4ddff change date
2025-07-14 00:44:17,577 [     scc.git] DEBUG Calling 'git submodule status'
2025-07-14 00:44:17,619 [  scc.config] DEBUG Found remote.origin.url
2025-07-14 00:44:17,823 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:18,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab HTTP/1.1" 200 None
2025-07-14 00:44:18,352 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:18,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-07-14 00:44:18,829 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:19,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-07-14 00:44:19,260 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:19,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-07-14 00:44:19,709 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:19,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-07-14 00:44:19,888 [     scc.git] DEBUG Resetting...
2025-07-14 00:44:19,888 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2025-07-14 00:44:19,892 [     scc.git] DEBUG HEAD is now at 7d4ddff change date
2025-07-14 00:44:19,892 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2025-07-14 00:44:19,932 [     scc.git] DEBUG Check current status
2025-07-14 00:44:19,932 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-07-14 00:44:19,934 [     scc.git] DEBUG 7d4ddff change date
2025-07-14 00:44:19,935 [     scc.git] DEBUG Calling 'git submodule status'
2025-07-14 00:44:19,973 [   scc.merge] INFO  Merging Pull Request(s) based on master
2025-07-14 00:44:19,974 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2025-07-14 00:44:19,974 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2025-07-14 00:44:19,974 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2025-07-14 00:44:19,974 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2025-07-14 00:44:19,974 [    scc.repo] DEBUG ## PRs found:
2025-07-14 00:44:20,138 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:20,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/pulls HTTP/1.1" 200 None
2025-07-14 00:44:20,649 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:20,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/issues/38 HTTP/1.1" 200 None
2025-07-14 00:44:20,954 [    scc.repo] DEBUG   - PR 38 jburel 'Update dependency'
2025-07-14 00:44:20,954 [    scc.repo] DEBUG ## Branches found:
2025-07-14 00:44:20,954 [     scc.git] DEBUG Get sha1 of %s
2025-07-14 00:44:20,954 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-14 00:44:20,957 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-07-14 00:44:20,959 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-14 00:44:20,959 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-07-14 00:44:20,962 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-07-14 00:44:20,965 [     scc.git] DEBUG Already up to date.

2025-07-14 00:44:20,965 [     scc.git] DEBUG Calling 'git fetch origin pull/38/head'
2025-07-14 00:44:21,254 [     scc.git] DEBUG From https://github.com/ome/omero-matlab
2025-07-14 00:44:21,254 [     scc.git] DEBUG  * branch            refs/pull/38/head -> FETCH_HEAD
2025-07-14 00:44:21,259 [     scc.git] DEBUG ## Unique users: []
2025-07-14 00:44:21,259 [     scc.git] DEBUG Get sha1 of %s
2025-07-14 00:44:21,259 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-14 00:44:21,261 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...a8d38c69bde53075007fff870c8bb5f671b87737'
2025-07-14 00:44:21,264 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-14 00:44:21,266 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 38 (Update dependency) a8d38c69bde53075007fff870c8bb5f671b87737'
2025-07-14 00:44:21,275 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-07-14 00:44:21,278 [     scc.git] DEBUG  .github/workflows/gradle.yml | 19 ++++++++++++-------
2025-07-14 00:44:21,278 [     scc.git] DEBUG  build.gradle                 |  4 ++--
2025-07-14 00:44:21,278 [     scc.git] DEBUG  2 files changed, 14 insertions(+), 9 deletions(-)
2025-07-14 00:44:21,280 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:21,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-14 00:44:21,448 [     scc.git] DEBUG Calling 'git submodule update'
2025-07-14 00:44:21,487 [     scc.git] DEBUG Get sha1 of %s
2025-07-14 00:44:21,487 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-14 00:44:21,489 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-07-14 00:44:21,493 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f2af1cf7c10> has no local changes
2025-07-14 00:44:21,493 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone

Repository: ome/omero-matlab
Already up to date.

Merged PRs:
  - PR 38 jburel 'Update dependency'

Generated by OMERO-matlab-push#432 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-matlab-push/432/)'
2025-07-14 00:44:21,499 [     scc.git] DEBUG [detached HEAD f810c6c] merge master -Dorg -Snone
2025-07-14 00:44:21,499 [   scc.merge] INFO  Repository: ome/omero-matlab
2025-07-14 00:44:21,500 [   scc.merge] INFO  Already up to date.
2025-07-14 00:44:21,500 [   scc.merge] INFO  
2025-07-14 00:44:21,500 [   scc.merge] INFO  Merged PRs:
2025-07-14 00:44:21,500 [   scc.merge] INFO    - PR 38 jburel 'Update dependency'
2025-07-14 00:44:21,500 [   scc.merge] INFO  
2025-07-14 00:44:21,500 [   scc.merge] DEBUG Cleaning remote branches created for merging
2025-07-14 00:44:21,500 [     scc.git] DEBUG Calling 'git remote'
Merge all submodules2025-07-14 00:44:21,935 [  scc.config] DEBUG Found github.token
2025-07-14 00:44:21,936 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:22,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-14 00:44:22,357 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:22,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-14 00:44:22,766 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:22,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2025-07-14 00:44:22,927 [      scc.gh] DEBUG 2911 remaining from 5000 (Reset at 00:07
2025-07-14 00:44:22,927 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2025-07-14 00:44:22,930 [     scc.git] DEBUG Check current status
2025-07-14 00:44:22,930 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-07-14 00:44:22,933 [     scc.git] DEBUG f810c6c merge master -Dorg -Snone
2025-07-14 00:44:22,933 [     scc.git] DEBUG Calling 'git submodule status'
2025-07-14 00:44:22,975 [  scc.config] DEBUG Found remote.origin.url
2025-07-14 00:44:23,178 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:23,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab HTTP/1.1" 200 None
2025-07-14 00:44:23,673 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:23,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2025-07-14 00:44:24,140 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:24,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2025-07-14 00:44:24,576 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:24,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2025-07-14 00:44:25,041 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:25,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2025-07-14 00:44:25,224 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-14 00:44:25,265 [     scc.git] DEBUG Resetting...
2025-07-14 00:44:25,265 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2025-07-14 00:44:25,269 [     scc.git] DEBUG HEAD is now at f810c6c merge master -Dorg -Snone
2025-07-14 00:44:25,269 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2025-07-14 00:44:25,309 [     scc.git] DEBUG Check current status
2025-07-14 00:44:25,309 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2025-07-14 00:44:25,311 [     scc.git] DEBUG f810c6c merge master -Dorg -Snone
2025-07-14 00:44:25,311 [     scc.git] DEBUG Calling 'git submodule status'
2025-07-14 00:44:25,349 [   scc.merge] INFO  Merging Pull Request(s) based on master
2025-07-14 00:44:25,349 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2025-07-14 00:44:25,349 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2025-07-14 00:44:25,349 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2025-07-14 00:44:25,349 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2025-07-14 00:44:25,349 [   scc.merge] INFO  Excluding Pull Request(s) without successful status
2025-07-14 00:44:25,350 [    scc.repo] DEBUG ## PRs found:
2025-07-14 00:44:25,475 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:25,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/pulls HTTP/1.1" 200 None
2025-07-14 00:44:25,984 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:26,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/issues/38 HTTP/1.1" 200 None
2025-07-14 00:44:26,478 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:26,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/commits/a8d38c69bde53075007fff870c8bb5f671b87737 HTTP/1.1" 200 None
2025-07-14 00:44:27,031 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:27,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/commits/a8d38c69bde53075007fff870c8bb5f671b87737/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-07-14 00:44:27,549 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:27,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/commits/a8d38c69bde53075007fff870c8bb5f671b87737/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-07-14 00:44:28,034 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:28,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/commits/a8d38c69bde53075007fff870c8bb5f671b87737 HTTP/1.1" 200 None
2025-07-14 00:44:28,564 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:28,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-matlab/statuses/a8d38c69bde53075007fff870c8bb5f671b87737?per_page=1 HTTP/1.1" 200 2
2025-07-14 00:44:28,750 [    scc.repo] DEBUG   - PR 38 jburel 'Update dependency'
2025-07-14 00:44:28,750 [    scc.repo] DEBUG ## Branches found:
2025-07-14 00:44:28,750 [     scc.git] DEBUG Get sha1 of %s
2025-07-14 00:44:28,750 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-14 00:44:28,753 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-07-14 00:44:28,755 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-07-14 00:44:28,755 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-07-14 00:44:28,758 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-07-14 00:44:28,761 [     scc.git] DEBUG Already up to date.

2025-07-14 00:44:28,761 [     scc.git] DEBUG Calling 'git fetch origin pull/38/head'
2025-07-14 00:44:29,045 [     scc.git] DEBUG From https://github.com/ome/omero-matlab
2025-07-14 00:44:29,045 [     scc.git] DEBUG  * branch            refs/pull/38/head -> FETCH_HEAD
2025-07-14 00:44:29,049 [     scc.git] DEBUG ## Unique users: []
2025-07-14 00:44:29,049 [     scc.git] DEBUG Get sha1 of %s
2025-07-14 00:44:29,049 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-14 00:44:29,051 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...a8d38c69bde53075007fff870c8bb5f671b87737'
2025-07-14 00:44:29,054 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-14 00:44:29,056 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 38 (Update dependency) a8d38c69bde53075007fff870c8bb5f671b87737'
2025-07-14 00:44:29,059 [     scc.git] DEBUG Already up to date.
2025-07-14 00:44:29,061 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-07-14 00:44:29,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-07-14 00:44:29,229 [     scc.git] DEBUG Calling 'git submodule update'
2025-07-14 00:44:29,268 [     scc.git] DEBUG Get sha1 of %s
2025-07-14 00:44:29,268 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-07-14 00:44:29,270 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-07-14 00:44:29,309 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-07-14 00:44:29,312 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f04a454dc90> has no local changes
2025-07-14 00:44:29,313 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-matlab
Already up to date.

Merged PRs:
  - PR 38 jburel 'Update dependency'

Generated by OMERO-matlab-push#432 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-matlab-push/432/)'
2025-07-14 00:44:29,319 [     scc.git] DEBUG [detached HEAD 75d422b] merge master -Dorg -Ssuccess-only
2025-07-14 00:44:29,319 [   scc.merge] INFO  Repository: ome/omero-matlab
2025-07-14 00:44:29,319 [   scc.merge] INFO  Already up to date.
2025-07-14 00:44:29,319 [   scc.merge] INFO  
2025-07-14 00:44:29,319 [   scc.merge] INFO  Merged PRs:
2025-07-14 00:44:29,319 [   scc.merge] INFO    - PR 38 jburel 'Update dependency'
2025-07-14 00:44:29,319 [   scc.merge] INFO  
2025-07-14 00:44:29,319 [   scc.merge] DEBUG Cleaning remote branches created for merging
2025-07-14 00:44:29,319 [     scc.git] DEBUG Calling 'git remote'
Update component versions
Updating omero-gateway from 5.10.1 to 5.10.4-SNAPSHOT
Commit all component version changes
[detached HEAD 5960903] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
2025-07-14 00:44:35,649 [    scc.push] INFO  Merged branch pushed to https://github.com/snoopycrimecop/omero-matlab/tree/merge_ci