Skipping 225 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-08-18 00:41:29,778 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:30,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2025-08-18 00:41:30,806 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:31,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2025-08-18 00:41:31,005 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-18 00:41:31,256 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:31,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2025-08-18 00:41:31,746 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:31,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2025-08-18 00:41:32,224 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:32,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-18 00:41:32,776 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:33,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-18 00:41:33,260 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:33,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2025-08-18 00:41:33,749 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:33,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2025-08-18 00:41:33,951 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2025-08-18 00:41:33,951 [ scc.repo] DEBUG ## Branches found:
2025-08-18 00:41:33,952 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-18 00:41:33,952 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:41:33,952 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:41:33,955 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-18 00:41:33,957 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-18 00:41:33,957 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-18 00:41:33,960 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-18 00:41:33,964 [ scc.git] DEBUG Already up to date.
2025-08-18 00:41:33,964 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2025-08-18 00:41:34,253 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-18 00:41:34,253 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2025-08-18 00:41:34,257 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2025-08-18 00:41:34,546 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2025-08-18 00:41:34,546 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2025-08-18 00:41:34,551 [ scc.git] DEBUG ## Unique users: []
2025-08-18 00:41:34,551 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:41:34,551 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:41:34,553 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-18 00:41:34,557 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:41:34,560 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2025-08-18 00:41:34,569 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-18 00:41:34,573 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2025-08-18 00:41:34,573 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2025-08-18 00:41:34,573 [ scc.git] DEBUG requirements.txt | 2 +-
2025-08-18 00:41:34,573 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2025-08-18 00:41:34,573 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2025-08-18 00:41:34,573 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2025-08-18 00:41:34,574 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:34,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:41:34,776 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-18 00:41:34,781 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:41:34,783 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2025-08-18 00:41:34,793 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-18 00:41:34,796 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-18 00:41:34,796 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-18 00:41:35,027 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:35,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:41:35,210 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-18 00:41:35,253 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:41:35,253 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:41:35,255 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-18 00:41:35,297 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-18 00:41:35,301 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7699d0d910> has no local changes
2025-08-18 00:41:35,301 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#507 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/)'
2025-08-18 00:41:35,307 [ scc.git] DEBUG [detached HEAD 52f5d84] merge master -Dorg -Ssuccess-only
2025-08-18 00:41:35,307 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:41:35,307 [ scc.repo] DEBUG ## PRs found:
2025-08-18 00:41:35,461 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:35,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-08-18 00:41:36,047 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:36,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-08-18 00:41:36,565 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:36,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-08-18 00:41:37,059 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:37,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-18 00:41:37,631 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:37,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-18 00:41:38,128 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:38,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-08-18 00:41:38,612 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:38,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-08-18 00:41:38,835 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-18 00:41:39,086 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:39,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-08-18 00:41:39,562 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:39,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-08-18 00:41:40,067 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:40,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-18 00:41:40,619 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:40,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-18 00:41:41,113 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:41,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-08-18 00:41:41,644 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:41,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-08-18 00:41:41,853 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-18 00:41:41,853 [ scc.repo] DEBUG ## Branches found:
2025-08-18 00:41:41,853 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-18 00:41:41,854 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:41:41,854 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:41:41,857 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-18 00:41:41,859 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-18 00:41:41,859 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-18 00:41:41,862 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-18 00:41:41,870 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-08-18 00:41:42,104 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:42,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-08-18 00:41:42,540 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-08-18 00:41:42,826 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-18 00:41:42,826 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-08-18 00:41:42,830 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-08-18 00:41:43,108 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-08-18 00:41:43,108 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-08-18 00:41:43,112 [ scc.git] DEBUG ## Unique users: []
2025-08-18 00:41:43,113 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:41:43,113 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:41:43,115 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-18 00:41:43,120 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:41:43,122 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-18 00:41:43,136 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-08-18 00:41:43,137 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-08-18 00:41:43,137 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-18 00:41:43,137 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-18 00:41:43,137 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-18 00:41:43,137 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-18 00:41:43,140 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-18 00:41:43,145 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-18 00:41:43,147 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:43,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:41:43,330 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-08-18 00:41:43,334 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-18 00:41:43,338 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#507](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-08-18 00:41:43,340 [ scc.config] DEBUG Found github.token
2025-08-18 00:41:43,340 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-08-18 00:41:43,340 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-18 00:41:43,345 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:41:43,347 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-18 00:41:43,363 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-08-18 00:41:43,363 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-08-18 00:41:43,363 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-08-18 00:41:43,363 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-18 00:41:43,363 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-18 00:41:43,367 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-18 00:41:43,372 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-08-18 00:41:43,580 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:43,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:41:43,777 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-08-18 00:41:43,782 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-08-18 00:41:43,785 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#507](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-08-18 00:41:43,787 [ scc.config] DEBUG Found github.token
2025-08-18 00:41:43,787 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-08-18 00:41:43,787 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-18 00:41:43,829 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:41:43,829 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:41:43,831 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-18 00:41:43,872 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-18 00:41:43,877 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7699a34910> has no local changes
2025-08-18 00:41:43,877 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#507 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/)'
2025-08-18 00:41:43,884 [ scc.git] DEBUG [detached HEAD b8e550f] merge master -Dorg -Ssuccess-only
2025-08-18 00:41:43,884 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:41:43,885 [ scc.repo] DEBUG ## PRs found:
2025-08-18 00:41:44,028 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:44,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-08-18 00:41:44,667 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:44,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-08-18 00:41:45,168 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:45,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-18 00:41:45,713 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:45,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-18 00:41:46,246 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:46,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-18 00:41:46,752 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:46,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-08-18 00:41:47,242 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:47,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-08-18 00:41:47,466 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-18 00:41:47,717 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:47,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-08-18 00:41:47,997 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-18 00:41:48,248 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:48,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-18 00:41:48,847 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:49,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-18 00:41:49,387 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:49,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-18 00:41:49,965 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:50,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-08-18 00:41:50,615 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:50,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-08-18 00:41:50,833 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-18 00:41:51,084 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:51,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-08-18 00:41:51,335 [ scc.repo] DEBUG # ... Include label: dependencies
2025-08-18 00:41:51,586 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:51,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-18 00:41:52,191 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:52,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-18 00:41:52,764 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:53,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-18 00:41:53,322 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:53,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-08-18 00:41:53,861 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:54,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-08-18 00:41:54,062 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-18 00:41:54,313 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:54,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-08-18 00:41:54,818 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:55,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-08-18 00:41:55,340 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:55,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-08-18 00:41:55,811 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:56,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-08-18 00:41:56,304 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:56,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-08-18 00:41:56,804 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:57,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-08-18 00:41:57,309 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:57,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-08-18 00:41:57,582 [ scc.repo] DEBUG ## Branches found:
2025-08-18 00:41:57,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-18 00:41:57,582 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:41:57,582 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:41:57,585 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-18 00:41:57,587 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-18 00:41:57,587 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-18 00:41:57,590 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-18 00:41:57,593 [ scc.git] DEBUG Already up to date.
2025-08-18 00:41:57,594 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-08-18 00:41:57,879 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-18 00:41:57,879 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-08-18 00:41:57,883 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-08-18 00:41:58,165 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-18 00:41:58,165 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-08-18 00:41:58,169 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-08-18 00:41:58,453 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-08-18 00:41:58,453 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-08-18 00:41:58,457 [ scc.git] DEBUG ## Unique users: []
2025-08-18 00:41:58,457 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:41:58,457 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:41:58,460 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-18 00:41:58,463 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:41:58,465 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-08-18 00:41:58,474 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-18 00:41:58,478 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-08-18 00:41:58,478 [ scc.git] DEBUG package.json | 2 +-
2025-08-18 00:41:58,478 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-08-18 00:41:58,479 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:58,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:41:58,676 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-08-18 00:41:58,680 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:41:58,682 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-08-18 00:41:58,693 [ scc.git] DEBUG Auto-merging package-lock.json
2025-08-18 00:41:58,693 [ scc.git] DEBUG Auto-merging package.json
2025-08-18 00:41:58,694 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-18 00:41:58,697 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-08-18 00:41:58,698 [ scc.git] DEBUG package.json | 2 +-
2025-08-18 00:41:58,698 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-08-18 00:41:58,927 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:59,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:41:59,124 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-18 00:41:59,128 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:41:59,130 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-08-18 00:41:59,140 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-18 00:41:59,143 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-08-18 00:41:59,143 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-08-18 00:41:59,375 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:41:59,564 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:41:59,564 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-18 00:41:59,608 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:41:59,608 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:41:59,611 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-18 00:41:59,651 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-18 00:41:59,655 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7699cdfad0> has no local changes
2025-08-18 00:41:59,655 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#507 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/)'
2025-08-18 00:41:59,662 [ scc.git] DEBUG [detached HEAD 4621c0e] merge master -Dorg -Ssuccess-only
2025-08-18 00:41:59,662 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:41:59,663 [ scc.repo] DEBUG ## PRs found:
2025-08-18 00:41:59,815 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:00,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-08-18 00:42:00,037 [ scc.repo] DEBUG ## Branches found:
2025-08-18 00:42:00,037 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-18 00:42:00,038 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:00,038 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:00,040 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-18 00:42:00,043 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-18 00:42:00,043 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-18 00:42:00,046 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-18 00:42:00,049 [ scc.git] DEBUG Already up to date.
2025-08-18 00:42:00,049 [ scc.git] DEBUG ## Unique users: []
2025-08-18 00:42:00,049 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:00,049 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:00,051 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-18 00:42:00,092 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:00,092 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:00,094 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-18 00:42:00,134 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-18 00:42:00,138 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7699adf750> has no local changes
2025-08-18 00:42:00,138 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#507 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/)'
2025-08-18 00:42:00,145 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:00,145 [ scc.git] DEBUG [detached HEAD 39a3712] merge master -Dorg -Ssuccess-only
2025-08-18 00:42:00,145 [ scc.repo] DEBUG ## PRs found:
2025-08-18 00:42:00,289 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:00,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-08-18 00:42:00,869 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:01,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-08-18 00:42:01,384 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:01,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-08-18 00:42:01,854 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:02,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-18 00:42:02,407 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:02,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-18 00:42:02,909 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:03,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-18 00:42:03,421 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:03,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-18 00:42:03,916 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:04,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-08-18 00:42:04,400 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:04,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-08-18 00:42:04,967 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:05,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-08-18 00:42:05,180 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-08-18 00:42:05,430 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:05,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-08-18 00:42:05,666 [ scc.repo] DEBUG ## Branches found:
2025-08-18 00:42:05,666 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-18 00:42:05,666 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:05,667 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:05,669 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-18 00:42:05,672 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-18 00:42:05,672 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-18 00:42:05,675 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-18 00:42:05,678 [ scc.git] DEBUG Already up to date.
2025-08-18 00:42:05,678 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-08-18 00:42:05,960 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-08-18 00:42:05,960 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-08-18 00:42:05,964 [ scc.git] DEBUG ## Unique users: []
2025-08-18 00:42:05,964 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:05,964 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:05,967 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-18 00:42:05,970 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:05,972 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-08-18 00:42:05,981 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-18 00:42:05,984 [ scc.git] DEBUG setup.py | 4 +-
2025-08-18 00:42:05,984 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-08-18 00:42:05,984 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-08-18 00:42:05,984 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-08-18 00:42:05,985 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:06,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:06,203 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-18 00:42:06,245 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:06,245 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:06,247 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-18 00:42:06,287 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-18 00:42:06,291 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f769814af90> has no local changes
2025-08-18 00:42:06,291 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#507 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/)'
2025-08-18 00:42:06,298 [ scc.git] DEBUG [detached HEAD 8587995] merge master -Dorg -Ssuccess-only
2025-08-18 00:42:06,298 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:06,298 [ scc.repo] DEBUG ## PRs found:
2025-08-18 00:42:06,454 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:06,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-08-18 00:42:06,986 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:07,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-08-18 00:42:07,506 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:07,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-08-18 00:42:08,017 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:08,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-18 00:42:08,622 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:08,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-18 00:42:09,104 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:09,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-08-18 00:42:09,666 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:09,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-08-18 00:42:09,894 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-18 00:42:09,894 [ scc.repo] DEBUG ## Branches found:
2025-08-18 00:42:09,894 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-18 00:42:09,894 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:09,894 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:09,897 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-18 00:42:09,900 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-18 00:42:09,900 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-18 00:42:09,903 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-18 00:42:09,906 [ scc.git] DEBUG Already up to date.
2025-08-18 00:42:09,906 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-08-18 00:42:10,186 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-08-18 00:42:10,186 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-08-18 00:42:10,190 [ scc.git] DEBUG ## Unique users: []
2025-08-18 00:42:10,190 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:10,190 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:10,193 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-18 00:42:10,197 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:10,199 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-18 00:42:10,209 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-08-18 00:42:10,209 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-08-18 00:42:10,209 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-08-18 00:42:10,209 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-08-18 00:42:10,209 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-08-18 00:42:10,209 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-08-18 00:42:10,209 [ scc.git] DEBUG Auto-merging setup.py
2025-08-18 00:42:10,209 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-08-18 00:42:10,209 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-18 00:42:10,209 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-18 00:42:10,212 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-18 00:42:10,216 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-08-18 00:42:10,218 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:10,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:10,411 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-08-18 00:42:10,415 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-08-18 00:42:10,418 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#507](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- setup.py
- omero_signup/urls.py
- omero_signup/views.py
--conflicts
2025-08-18 00:42:10,420 [ scc.config] DEBUG Found github.token
2025-08-18 00:42:10,420 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-08-18 00:42:10,420 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-18 00:42:10,462 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:10,462 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:10,465 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-18 00:42:10,505 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-18 00:42:10,509 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7699d0cb90> has no local changes
2025-08-18 00:42:10,509 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#507 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/)'
2025-08-18 00:42:10,516 [ scc.git] DEBUG [detached HEAD 123904f] merge master -Dorg -Ssuccess-only
2025-08-18 00:42:10,516 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:10,516 [ scc.repo] DEBUG ## PRs found:
2025-08-18 00:42:10,662 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:10,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-08-18 00:42:11,249 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:11,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-08-18 00:42:11,772 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:12,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-18 00:42:12,388 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:12,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-18 00:42:12,900 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:13,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-18 00:42:13,423 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:13,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-08-18 00:42:14,043 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:14,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-08-18 00:42:14,251 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-08-18 00:42:14,502 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:14,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-08-18 00:42:15,082 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:15,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-08-18 00:42:15,585 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:15,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-08-18 00:42:16,125 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:16,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-18 00:42:16,645 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:17,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-18 00:42:17,448 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:17,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-08-18 00:42:17,987 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:18,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-08-18 00:42:18,468 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:18,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-08-18 00:42:18,990 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:19,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-08-18 00:42:19,492 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:19,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-18 00:42:20,065 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:20,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-18 00:42:20,546 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:20,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-08-18 00:42:21,118 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:21,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-08-18 00:42:21,340 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-18 00:42:21,340 [ scc.repo] DEBUG ## Branches found:
2025-08-18 00:42:21,340 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-18 00:42:21,340 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:21,340 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:21,343 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-18 00:42:21,346 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-18 00:42:21,346 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-18 00:42:21,349 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-18 00:42:21,352 [ scc.git] DEBUG Already up to date.
2025-08-18 00:42:21,352 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-08-18 00:42:21,660 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-18 00:42:21,660 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-08-18 00:42:21,665 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-08-18 00:42:21,948 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-08-18 00:42:21,948 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-08-18 00:42:21,953 [ scc.git] DEBUG ## Unique users: []
2025-08-18 00:42:21,953 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:21,953 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:21,955 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-08-18 00:42:21,960 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:21,962 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-08-18 00:42:21,975 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-18 00:42:21,979 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-08-18 00:42:21,979 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-08-18 00:42:21,979 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-08-18 00:42:21,979 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-08-18 00:42:21,979 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-08-18 00:42:21,979 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-08-18 00:42:21,979 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-08-18 00:42:21,979 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-08-18 00:42:21,979 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-08-18 00:42:21,979 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-08-18 00:42:21,980 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:21,980 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-08-18 00:42:21,980 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-08-18 00:42:21,980 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-08-18 00:42:21,980 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-08-18 00:42:21,980 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-08-18 00:42:21,980 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-08-18 00:42:21,980 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-08-18 00:42:21,980 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-08-18 00:42:21,980 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-08-18 00:42:21,980 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-08-18 00:42:21,980 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-08-18 00:42:21,980 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-08-18 00:42:21,981 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-08-18 00:42:21,981 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-08-18 00:42:22,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:22,157 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-18 00:42:22,162 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:22,164 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-08-18 00:42:22,174 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-18 00:42:22,177 [ scc.git] DEBUG docker | 1 +
2025-08-18 00:42:22,177 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-08-18 00:42:22,408 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:22,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:22,588 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-18 00:42:22,629 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:22,629 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:22,632 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-18 00:42:22,672 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-18 00:42:22,676 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7698130dd0> has no local changes
2025-08-18 00:42:22,676 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#507 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/)'
2025-08-18 00:42:22,683 [ scc.git] DEBUG [detached HEAD 7542e98] merge master -Dorg -Ssuccess-only
2025-08-18 00:42:22,684 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:22,684 [ scc.repo] DEBUG ## PRs found:
2025-08-18 00:42:22,839 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:23,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-08-18 00:42:23,049 [ scc.repo] DEBUG ## Branches found:
2025-08-18 00:42:23,049 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-18 00:42:23,049 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:23,049 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:23,052 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-18 00:42:23,054 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-18 00:42:23,054 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-18 00:42:23,057 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-18 00:42:23,060 [ scc.git] DEBUG Already up to date.
2025-08-18 00:42:23,060 [ scc.git] DEBUG ## Unique users: []
2025-08-18 00:42:23,060 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:23,060 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:23,062 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-18 00:42:23,101 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:23,101 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:23,104 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-18 00:42:23,143 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-18 00:42:23,146 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7698166f50> has no local changes
2025-08-18 00:42:23,146 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#507 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/)'
2025-08-18 00:42:23,153 [ scc.git] DEBUG [detached HEAD 6b2ade0] merge master -Dorg -Ssuccess-only
2025-08-18 00:42:23,153 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:23,153 [ scc.repo] DEBUG ## PRs found:
2025-08-18 00:42:23,300 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:23,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-08-18 00:42:23,515 [ scc.repo] DEBUG ## Branches found:
2025-08-18 00:42:23,515 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-18 00:42:23,515 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:23,515 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:23,517 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-18 00:42:23,520 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-18 00:42:23,520 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-18 00:42:23,523 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-18 00:42:23,531 [ scc.git] DEBUG Updating deab817..160d894
2025-08-18 00:42:23,766 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:24,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-08-18 00:42:24,259 [ scc.git] DEBUG ## Unique users: []
2025-08-18 00:42:24,260 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:24,260 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:24,262 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-18 00:42:24,304 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:24,304 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:24,306 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-18 00:42:24,347 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-18 00:42:24,350 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7698188790> has no local changes
2025-08-18 00:42:24,351 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#507 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/)'
2025-08-18 00:42:24,357 [ scc.git] DEBUG [detached HEAD 88b540a] merge master -Dorg -Ssuccess-only
2025-08-18 00:42:24,357 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:24,357 [ scc.git] INFO Overriding base-branch from master to main
2025-08-18 00:42:24,357 [ scc.repo] DEBUG ## PRs found:
2025-08-18 00:42:24,510 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:24,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-08-18 00:42:25,156 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:25,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-08-18 00:42:25,649 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:25,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-08-18 00:42:26,160 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:26,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-08-18 00:42:26,720 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:27,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-18 00:42:27,315 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:27,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-18 00:42:27,849 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:28,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-08-18 00:42:28,354 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:28,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-08-18 00:42:28,841 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:29,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-08-18 00:42:29,356 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:29,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-18 00:42:29,887 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:30,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-18 00:42:30,358 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:30,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-08-18 00:42:30,874 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:31,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-08-18 00:42:31,090 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-18 00:42:31,090 [ scc.repo] DEBUG ## Branches found:
2025-08-18 00:42:31,090 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-18 00:42:31,090 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:31,090 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:31,093 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-08-18 00:42:31,095 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-18 00:42:31,095 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-08-18 00:42:31,098 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-08-18 00:42:31,102 [ scc.git] DEBUG Already up to date.
2025-08-18 00:42:31,102 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-08-18 00:42:31,392 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-08-18 00:42:31,393 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-08-18 00:42:31,397 [ scc.git] DEBUG ## Unique users: []
2025-08-18 00:42:31,397 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:31,397 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:31,399 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-18 00:42:31,402 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:31,405 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-18 00:42:31,413 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-08-18 00:42:31,413 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-08-18 00:42:31,413 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-18 00:42:31,413 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-18 00:42:31,416 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-18 00:42:31,420 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-08-18 00:42:31,421 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:31,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:31,615 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-08-18 00:42:31,618 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-08-18 00:42:31,620 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#507](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-08-18 00:42:31,623 [ scc.config] DEBUG Found github.token
2025-08-18 00:42:31,623 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-08-18 00:42:31,623 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-18 00:42:31,665 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:31,666 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:31,668 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-18 00:42:31,707 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-18 00:42:31,711 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f769814d910> has no local changes
2025-08-18 00:42:31,711 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#507 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/)'
2025-08-18 00:42:31,717 [ scc.git] DEBUG [detached HEAD eabe5f0] merge master -Dorg -Ssuccess-only
2025-08-18 00:42:31,718 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:31,718 [ scc.repo] DEBUG ## PRs found:
2025-08-18 00:42:31,866 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:32,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-08-18 00:42:32,084 [ scc.repo] DEBUG ## Branches found:
2025-08-18 00:42:32,084 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-18 00:42:32,084 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:32,084 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:32,087 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-18 00:42:32,089 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-18 00:42:32,089 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-18 00:42:32,092 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-18 00:42:32,095 [ scc.git] DEBUG Already up to date.
2025-08-18 00:42:32,095 [ scc.git] DEBUG ## Unique users: []
2025-08-18 00:42:32,095 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:32,095 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:32,098 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-18 00:42:32,138 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:32,138 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:32,140 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-18 00:42:32,178 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-18 00:42:32,182 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7698183310> has no local changes
2025-08-18 00:42:32,182 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#507 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/)'
2025-08-18 00:42:32,188 [ scc.git] DEBUG [detached HEAD 1465259] merge master -Dorg -Ssuccess-only
2025-08-18 00:42:32,188 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:32,188 [ scc.repo] DEBUG ## PRs found:
2025-08-18 00:42:32,335 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:32,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-08-18 00:42:32,583 [ scc.repo] DEBUG ## Branches found:
2025-08-18 00:42:32,583 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-18 00:42:32,583 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:32,583 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:32,586 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-18 00:42:32,588 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-18 00:42:32,588 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-18 00:42:32,591 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-18 00:42:32,594 [ scc.git] DEBUG Already up to date.
2025-08-18 00:42:32,594 [ scc.git] DEBUG ## Unique users: []
2025-08-18 00:42:32,594 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:32,595 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:32,597 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-18 00:42:32,637 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:32,637 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:32,639 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-18 00:42:32,679 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-18 00:42:32,683 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7698184d90> has no local changes
2025-08-18 00:42:32,683 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#507 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/)'
2025-08-18 00:42:32,689 [ scc.git] DEBUG [detached HEAD bac060e] merge master -Dorg -Ssuccess-only
2025-08-18 00:42:32,690 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:32,690 [ scc.repo] DEBUG ## PRs found:
2025-08-18 00:42:32,834 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:33,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-08-18 00:42:33,383 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:33,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-08-18 00:42:33,920 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:34,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-08-18 00:42:34,412 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:34,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-18 00:42:34,961 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:35,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-18 00:42:35,456 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:35,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-08-18 00:42:35,998 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:36,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-08-18 00:42:36,190 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-08-18 00:42:36,190 [ scc.repo] DEBUG ## Branches found:
2025-08-18 00:42:36,190 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-18 00:42:36,190 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:36,190 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:36,193 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-08-18 00:42:36,196 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-18 00:42:36,196 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-08-18 00:42:36,199 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-08-18 00:42:36,202 [ scc.git] DEBUG Already up to date.
2025-08-18 00:42:36,202 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-08-18 00:42:36,479 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-08-18 00:42:36,479 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-08-18 00:42:36,483 [ scc.git] DEBUG ## Unique users: []
2025-08-18 00:42:36,484 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:36,484 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:36,486 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-18 00:42:36,489 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:36,491 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-18 00:42:36,500 [ scc.git] DEBUG Auto-merging Dockerfile
2025-08-18 00:42:36,500 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-08-18 00:42:36,500 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-18 00:42:36,501 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-18 00:42:36,504 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-18 00:42:36,509 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-08-18 00:42:36,510 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:36,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:36,737 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-08-18 00:42:36,740 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-08-18 00:42:36,743 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#507](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-08-18 00:42:36,745 [ scc.config] DEBUG Found github.token
2025-08-18 00:42:36,745 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-08-18 00:42:36,745 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-18 00:42:36,786 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:36,786 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:36,788 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-18 00:42:36,828 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-18 00:42:36,832 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7699b34450> has no local changes
2025-08-18 00:42:36,832 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#507 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/)'
2025-08-18 00:42:36,839 [ scc.git] DEBUG [detached HEAD 2da1318] merge master -Dorg -Ssuccess-only
2025-08-18 00:42:36,839 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:36,839 [ scc.git] INFO Overriding base-branch from master to develop
2025-08-18 00:42:36,840 [ scc.repo] DEBUG ## PRs found:
2025-08-18 00:42:36,988 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:37,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-08-18 00:42:37,645 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:37,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-08-18 00:42:38,183 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:38,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-08-18 00:42:38,676 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:38,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-18 00:42:39,221 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:39,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-18 00:42:39,765 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:40,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-08-18 00:42:40,258 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:40,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-08-18 00:42:40,743 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:40,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-08-18 00:42:40,997 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-18 00:42:41,248 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:41,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-08-18 00:42:41,747 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:41,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-08-18 00:42:42,211 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:42,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-18 00:42:42,732 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:42,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-08-18 00:42:43,223 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:43,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-08-18 00:42:43,714 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:43,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-08-18 00:42:43,937 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-18 00:42:44,188 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:44,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-08-18 00:42:44,778 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:45,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-08-18 00:42:45,272 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:45,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-08-18 00:42:45,810 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:46,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-08-18 00:42:46,028 [ scc.repo] DEBUG ## Branches found:
2025-08-18 00:42:46,028 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-18 00:42:46,028 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:46,028 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:46,031 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-08-18 00:42:46,034 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-08-18 00:42:46,034 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-08-18 00:42:46,037 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-08-18 00:42:46,048 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-08-18 00:42:46,278 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:46,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-08-18 00:42:46,981 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:47,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-08-18 00:42:47,439 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-08-18 00:42:47,729 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-18 00:42:47,729 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-08-18 00:42:47,733 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-08-18 00:42:48,017 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-08-18 00:42:48,017 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-08-18 00:42:48,021 [ scc.git] DEBUG ## Unique users: []
2025-08-18 00:42:48,021 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:48,021 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:48,023 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-18 00:42:48,029 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:48,031 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-18 00:42:48,042 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-08-18 00:42:48,043 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-08-18 00:42:48,043 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-08-18 00:42:48,046 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-08-18 00:42:48,050 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-08-18 00:42:48,051 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:48,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:48,240 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-08-18 00:42:48,246 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-08-18 00:42:48,250 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#507](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-08-18 00:42:48,252 [ scc.config] DEBUG Found github.token
2025-08-18 00:42:48,252 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-08-18 00:42:48,252 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-18 00:42:48,257 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:48,259 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-08-18 00:42:48,269 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-08-18 00:42:48,272 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-08-18 00:42:48,272 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-08-18 00:42:48,491 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:48,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:48,666 [ scc.git] DEBUG Calling 'git submodule update'
2025-08-18 00:42:48,707 [ scc.git] DEBUG Get sha1 of %s
2025-08-18 00:42:48,708 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-08-18 00:42:48,710 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-18 00:42:48,750 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-18 00:42:48,754 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f76981a36d0> has no local changes
2025-08-18 00:42:48,754 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#507 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/)'
2025-08-18 00:42:48,761 [ scc.git] DEBUG [detached HEAD 8cc9887] merge master -Dorg -Ssuccess-only
2025-08-18 00:42:48,761 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:48,761 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-08-18 00:42:48,840 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-08-18 00:42:48,917 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:49,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:49,106 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-08-18 00:42:49,108 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-08-18 00:42:49,352 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:49,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:49,559 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-08-18 00:42:49,561 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-08-18 00:42:49,806 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:50,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:50,007 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-08-18 00:42:50,009 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-08-18 00:42:50,253 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:50,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:50,452 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-08-18 00:42:50,696 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:50,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:50,893 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-08-18 00:42:50,895 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-08-18 00:42:51,139 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:51,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:51,341 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-08-18 00:42:51,343 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-08-18 00:42:51,588 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:51,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:51,807 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-08-18 00:42:51,809 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-08-18 00:42:52,053 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:52,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:52,254 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-08-18 00:42:52,256 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-08-18 00:42:52,500 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:52,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:52,715 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-08-18 00:42:52,717 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-08-18 00:42:52,961 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:53,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:53,157 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-08-18 00:42:53,160 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-08-18 00:42:53,404 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:53,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:53,616 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-08-18 00:42:53,618 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-08-18 00:42:53,862 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:54,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:54,194 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-08-18 00:42:54,196 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-08-18 00:42:54,441 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:54,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:54,629 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-08-18 00:42:54,873 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:55,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:55,079 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-08-18 00:42:55,323 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:55,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:55,546 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-08-18 00:42:55,549 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-08-18 00:42:55,793 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:55,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:55,978 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-08-18 00:42:56,223 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:56,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:56,452 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-08-18 00:42:56,696 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:56,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:56,887 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-08-18 00:42:56,889 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-08-18 00:42:57,134 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:57,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:57,319 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-08-18 00:42:57,321 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-08-18 00:42:57,565 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:57,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:57,751 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-08-18 00:42:57,754 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-08-18 00:42:57,998 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:58,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:58,197 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-08-18 00:42:58,199 [ scc.config] DEBUG Found submodule.scripts.url
2025-08-18 00:42:58,443 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-08-18 00:42:58,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-08-18 00:42:58,690 [ scc.config] DEBUG Found submodule.scripts.branch
2025-08-18 00:42:58,690 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-08-18 00:42:58,783 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7699d06c10> has local changes
2025-08-18 00:42:58,783 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 180 will-moore 'Register command' (status: failure)
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#507 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/507/)'
2025-08-18 00:42:58,797 [ scc.git] DEBUG [detached HEAD d6c93e4] merge master -Dorg -Ssuccess-only
2025-08-18 00:42:58,797 [ scc.merge] INFO Repository: ome/omero-plugins
2025-08-18 00:42:58,797 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-08-18 00:42:58,797 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,797 [ scc.merge] INFO
2025-08-18 00:42:58,797 [ scc.merge] INFO Merged PRs:
2025-08-18 00:42:58,797 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-08-18 00:42:58,798 [ scc.merge] INFO
2025-08-18 00:42:58,798 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-08-18 00:42:58,798 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,798 [ scc.merge] INFO
2025-08-18 00:42:58,798 [ scc.merge] INFO
2025-08-18 00:42:58,798 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-08-18 00:42:58,798 [ scc.merge] INFO Excluded PRs:
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-08-18 00:42:58,798 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,798 [ scc.merge] INFO
2025-08-18 00:42:58,798 [ scc.merge] INFO
2025-08-18 00:42:58,798 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-08-18 00:42:58,798 [ scc.merge] INFO Excluded PRs:
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-08-18 00:42:58,798 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,798 [ scc.merge] INFO
2025-08-18 00:42:58,798 [ scc.merge] INFO Merged PRs:
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-08-18 00:42:58,798 [ scc.merge] INFO
2025-08-18 00:42:58,798 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-08-18 00:42:58,798 [ scc.merge] INFO Excluded PRs:
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 180 will-moore 'Register command' (status: failure)
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-08-18 00:42:58,798 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-08-18 00:42:58,798 [ scc.merge] INFO Previously merged:
2025-08-18 00:42:58,798 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-18 00:42:58,799 [ scc.merge] INFO
2025-08-18 00:42:58,799 [ scc.merge] INFO Merged PRs:
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-08-18 00:42:58,799 [ scc.merge] INFO
2025-08-18 00:42:58,799 [ scc.merge] INFO Repository: ome/omero-figure
2025-08-18 00:42:58,799 [ scc.merge] INFO Excluded PRs:
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-08-18 00:42:58,799 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-08-18 00:42:58,799 [ scc.merge] INFO Previously merged:
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-18 00:42:58,799 [ scc.merge] INFO
2025-08-18 00:42:58,799 [ scc.merge] INFO Merged PRs:
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-08-18 00:42:58,799 [ scc.merge] INFO
2025-08-18 00:42:58,799 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-08-18 00:42:58,799 [ scc.merge] INFO
2025-08-18 00:42:58,799 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-08-18 00:42:58,799 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,799 [ scc.merge] INFO
2025-08-18 00:42:58,799 [ scc.merge] INFO Merged PRs:
2025-08-18 00:42:58,799 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-08-18 00:42:58,800 [ scc.merge] INFO
2025-08-18 00:42:58,800 [ scc.merge] INFO Repository: ome/omero-gallery
2025-08-18 00:42:58,800 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,800 [ scc.merge] INFO
2025-08-18 00:42:58,800 [ scc.merge] INFO Merged PRs:
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-08-18 00:42:58,800 [ scc.merge] INFO
2025-08-18 00:42:58,800 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-08-18 00:42:58,800 [ scc.merge] INFO
2025-08-18 00:42:58,800 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-08-18 00:42:58,800 [ scc.merge] INFO Excluded PRs:
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-08-18 00:42:58,800 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-08-18 00:42:58,800 [ scc.merge] INFO Previously merged:
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-18 00:42:58,800 [ scc.merge] INFO
2025-08-18 00:42:58,800 [ scc.merge] INFO Merged PRs:
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-08-18 00:42:58,800 [ scc.merge] INFO
2025-08-18 00:42:58,800 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-08-18 00:42:58,800 [ scc.merge] INFO
2025-08-18 00:42:58,800 [ scc.merge] INFO Repository: ome/omero-mapr
2025-08-18 00:42:58,800 [ scc.merge] INFO Excluded PRs:
2025-08-18 00:42:58,800 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-08-18 00:42:58,800 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,800 [ scc.merge] INFO
2025-08-18 00:42:58,801 [ scc.merge] INFO Merged PRs:
2025-08-18 00:42:58,801 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-08-18 00:42:58,801 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-18 00:42:58,801 [ scc.merge] INFO
2025-08-18 00:42:58,801 [ scc.merge] INFO Repository: ome/omero-metadata
2025-08-18 00:42:58,801 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-08-18 00:42:58,801 [ scc.merge] INFO Previously merged:
2025-08-18 00:42:58,801 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-18 00:42:58,801 [ scc.merge] INFO
2025-08-18 00:42:58,801 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-18 00:42:58,801 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-08-18 00:42:58,801 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-08-18 00:42:58,801 [ scc.merge] INFO
2025-08-18 00:42:58,801 [ scc.merge] INFO Repository: ome/omero-parade
2025-08-18 00:42:58,801 [ scc.merge] INFO Excluded PRs:
2025-08-18 00:42:58,801 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-08-18 00:42:58,801 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-08-18 00:42:58,801 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-08-18 00:42:58,801 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-08-18 00:42:58,801 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,801 [ scc.merge] INFO
2025-08-18 00:42:58,801 [ scc.merge] INFO Merged PRs:
2025-08-18 00:42:58,801 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-08-18 00:42:58,801 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-08-18 00:42:58,801 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-08-18 00:42:58,801 [ scc.merge] INFO
2025-08-18 00:42:58,801 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-08-18 00:42:58,801 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,801 [ scc.merge] INFO
2025-08-18 00:42:58,801 [ scc.merge] INFO
2025-08-18 00:42:58,801 [ scc.merge] INFO Repository: ome/omero-rois
2025-08-18 00:42:58,801 [ scc.merge] INFO Excluded PRs:
2025-08-18 00:42:58,801 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-08-18 00:42:58,801 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,801 [ scc.merge] INFO
2025-08-18 00:42:58,801 [ scc.merge] INFO Merged PRs:
2025-08-18 00:42:58,801 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-08-18 00:42:58,801 [ scc.merge] INFO
2025-08-18 00:42:58,801 [ scc.merge] INFO Repository: ome/omero-signup
2025-08-18 00:42:58,802 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,802 [ scc.merge] INFO
2025-08-18 00:42:58,802 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-18 00:42:58,802 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-08-18 00:42:58,802 [ scc.merge] INFO
2025-08-18 00:42:58,802 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-08-18 00:42:58,802 [ scc.merge] INFO Excluded PRs:
2025-08-18 00:42:58,802 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-08-18 00:42:58,802 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-08-18 00:42:58,802 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-08-18 00:42:58,802 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,802 [ scc.merge] INFO
2025-08-18 00:42:58,802 [ scc.merge] INFO Merged PRs:
2025-08-18 00:42:58,802 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-08-18 00:42:58,802 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-08-18 00:42:58,802 [ scc.merge] INFO
2025-08-18 00:42:58,802 [ scc.merge] INFO Repository: ome/omero-upload
2025-08-18 00:42:58,802 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,802 [ scc.merge] INFO
2025-08-18 00:42:58,802 [ scc.merge] INFO
2025-08-18 00:42:58,802 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-08-18 00:42:58,802 [ scc.merge] INFO Updating deab817..160d894
2025-08-18 00:42:58,802 [ scc.merge] INFO Previously merged:
2025-08-18 00:42:58,802 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-08-18 00:42:58,802 [ scc.merge] INFO
2025-08-18 00:42:58,802 [ scc.merge] INFO
2025-08-18 00:42:58,802 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-08-18 00:42:58,802 [ scc.merge] INFO Excluded PRs:
2025-08-18 00:42:58,802 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-08-18 00:42:58,802 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-08-18 00:42:58,802 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,802 [ scc.merge] INFO
2025-08-18 00:42:58,802 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-18 00:42:58,802 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-08-18 00:42:58,802 [ scc.merge] INFO
2025-08-18 00:42:58,802 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-08-18 00:42:58,802 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,802 [ scc.merge] INFO
2025-08-18 00:42:58,802 [ scc.merge] INFO
2025-08-18 00:42:58,802 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-08-18 00:42:58,803 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,803 [ scc.merge] INFO
2025-08-18 00:42:58,803 [ scc.merge] INFO
2025-08-18 00:42:58,803 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-08-18 00:42:58,803 [ scc.merge] INFO Already up to date.
2025-08-18 00:42:58,803 [ scc.merge] INFO
2025-08-18 00:42:58,803 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-18 00:42:58,803 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-08-18 00:42:58,803 [ scc.merge] INFO
2025-08-18 00:42:58,803 [ scc.merge] INFO Repository: ome/scripts
2025-08-18 00:42:58,803 [ scc.merge] INFO Excluded PRs:
2025-08-18 00:42:58,803 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-08-18 00:42:58,803 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-08-18 00:42:58,803 [ scc.merge] INFO Updating 4b4c755..573db34
2025-08-18 00:42:58,803 [ scc.merge] INFO Previously merged:
2025-08-18 00:42:58,803 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-08-18 00:42:58,803 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-08-18 00:42:58,803 [ scc.merge] INFO
2025-08-18 00:42:58,803 [ scc.merge] INFO Merged PRs:
2025-08-18 00:42:58,803 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-08-18 00:42:58,803 [ scc.merge] INFO
2025-08-18 00:42:58,803 [ scc.merge] INFO Conflicting PRs (not included):
2025-08-18 00:42:58,803 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-08-18 00:42:58,803 [ scc.merge] INFO
2025-08-18 00:42:58,803 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-08-18 00:42:58,803 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,805 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-08-18 00:42:58,805 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,807 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,808 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-08-18 00:42:58,808 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,810 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,810 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-08-18 00:42:58,810 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,812 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,812 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-08-18 00:42:58,813 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,815 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,815 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-08-18 00:42:58,815 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,817 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,817 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-08-18 00:42:58,817 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,819 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,819 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-08-18 00:42:58,819 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,821 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,822 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-08-18 00:42:58,822 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,824 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,824 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-08-18 00:42:58,824 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,826 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,826 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-08-18 00:42:58,826 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,828 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,829 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-08-18 00:42:58,829 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,831 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,831 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-08-18 00:42:58,831 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,833 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,833 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-08-18 00:42:58,833 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,835 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,835 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-08-18 00:42:58,835 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,838 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,838 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-08-18 00:42:58,838 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,840 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,840 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-08-18 00:42:58,840 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,842 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,842 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-08-18 00:42:58,842 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,844 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,844 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-08-18 00:42:58,845 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,847 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,847 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-08-18 00:42:58,847 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,849 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,849 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-08-18 00:42:58,849 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,851 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,851 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-08-18 00:42:58,852 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,854 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-08-18 00:42:58,854 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-08-18 00:42:58,854 [ scc.git] DEBUG Calling 'git remote'
2025-08-18 00:42:58,856 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 145fef0] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 74d4230] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-08-18 00:43:49,562 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-08-18 00:43:59,534 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-08-18 00:44:02,140 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-18 00:44:07,366 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-08-18 00:44:48,105 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/eb00aee0/images/svgs/logo.svg){kind=logo}
