Skipping 235 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-09-01 00:54:23,300 [ scc.git] DEBUG [detached HEAD 796a36d] merge master -Dorg -Ssuccess-only
2025-09-01 00:54:23,300 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:54:23,300 [ scc.repo] DEBUG ## PRs found:
2025-09-01 00:54:23,458 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:23,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2025-09-01 00:54:24,019 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:24,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2025-09-01 00:54:24,564 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:24,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2025-09-01 00:54:25,133 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:25,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-09-01 00:54:25,709 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:25,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:54:26,227 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:26,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2025-09-01 00:54:26,755 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:26,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2025-09-01 00:54:26,970 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-09-01 00:54:27,221 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:27,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2025-09-01 00:54:27,775 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:28,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-09-01 00:54:28,277 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:28,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-09-01 00:54:28,840 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:29,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:54:29,923 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:30,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-09-01 00:54:30,407 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:30,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-09-01 00:54:30,617 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-09-01 00:54:30,617 [ scc.repo] DEBUG ## Branches found:
2025-09-01 00:54:30,617 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-09-01 00:54:30,617 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:54:30,617 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:30,620 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-01 00:54:30,623 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-01 00:54:30,623 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-01 00:54:30,626 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-01 00:54:30,634 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-09-01 00:54:30,869 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:31,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-09-01 00:54:31,315 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-09-01 00:54:31,604 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-09-01 00:54:31,604 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-09-01 00:54:31,608 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-09-01 00:54:31,890 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-09-01 00:54:31,890 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-09-01 00:54:31,894 [ scc.git] DEBUG ## Unique users: []
2025-09-01 00:54:31,894 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:54:31,894 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:31,896 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-01 00:54:31,901 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:31,903 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-01 00:54:31,916 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-09-01 00:54:31,916 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-09-01 00:54:31,916 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-09-01 00:54:31,916 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-09-01 00:54:31,916 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-01 00:54:31,917 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-01 00:54:31,919 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-01 00:54:31,924 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-09-01 00:54:31,926 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:32,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:54:32,118 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-01 00:54:32,123 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-01 00:54:32,127 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#522](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-09-01 00:54:32,129 [ scc.config] DEBUG Found github.token
2025-09-01 00:54:32,129 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-09-01 00:54:32,129 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-01 00:54:32,134 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:32,136 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-01 00:54:32,151 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-09-01 00:54:32,151 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-09-01 00:54:32,151 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-09-01 00:54:32,151 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-01 00:54:32,152 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-01 00:54:32,155 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-01 00:54:32,159 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-09-01 00:54:32,371 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:32,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:54:32,560 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-01 00:54:32,565 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-01 00:54:32,568 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#522](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-09-01 00:54:32,570 [ scc.config] DEBUG Found github.token
2025-09-01 00:54:32,570 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-09-01 00:54:32,570 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-01 00:54:32,612 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:54:32,612 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:32,614 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-01 00:54:32,654 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-01 00:54:32,658 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed319f8990> has no local changes
2025-09-01 00:54:32,659 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#522 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/)'
2025-09-01 00:54:32,666 [ scc.git] DEBUG [detached HEAD d121eb5] merge master -Dorg -Ssuccess-only
2025-09-01 00:54:32,666 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:54:32,666 [ scc.repo] DEBUG ## PRs found:
2025-09-01 00:54:32,813 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:33,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-09-01 00:54:33,445 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:33,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-09-01 00:54:33,934 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:34,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-09-01 00:54:34,500 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:34,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:54:35,037 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:35,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-01 00:54:35,542 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:35,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-09-01 00:54:36,060 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:36,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-09-01 00:54:36,267 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-01 00:54:36,519 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:36,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-09-01 00:54:36,791 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-01 00:54:37,042 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:37,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-09-01 00:54:37,628 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:37,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:54:38,169 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:38,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-01 00:54:38,760 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:39,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-09-01 00:54:39,349 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:39,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-09-01 00:54:39,555 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-09-01 00:54:39,806 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:40,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-09-01 00:54:40,087 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-01 00:54:40,339 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:40,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-09-01 00:54:40,962 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:41,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:54:41,506 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:41,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-01 00:54:42,076 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:42,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-09-01 00:54:42,654 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:42,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-09-01 00:54:42,874 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-09-01 00:54:43,126 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:43,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-09-01 00:54:43,702 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:43,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-09-01 00:54:44,214 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:44,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-09-01 00:54:44,705 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:44,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-09-01 00:54:45,208 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:45,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-09-01 00:54:45,721 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:45,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-09-01 00:54:46,242 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:46,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-09-01 00:54:46,555 [ scc.repo] DEBUG ## Branches found:
2025-09-01 00:54:46,555 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-09-01 00:54:46,556 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:54:46,556 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:46,559 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-01 00:54:46,561 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-01 00:54:46,561 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-01 00:54:46,564 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-01 00:54:46,567 [ scc.git] DEBUG Already up to date.
2025-09-01 00:54:46,567 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-09-01 00:54:46,867 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-01 00:54:46,867 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-09-01 00:54:46,871 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-09-01 00:54:47,154 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-01 00:54:47,154 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-09-01 00:54:47,158 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-09-01 00:54:47,449 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-01 00:54:47,450 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-09-01 00:54:47,454 [ scc.git] DEBUG ## Unique users: []
2025-09-01 00:54:47,454 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:54:47,454 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:47,456 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-09-01 00:54:47,459 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:47,461 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-09-01 00:54:47,470 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-01 00:54:47,473 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-09-01 00:54:47,473 [ scc.git] DEBUG package.json | 2 +-
2025-09-01 00:54:47,473 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-09-01 00:54:47,476 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:47,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:54:47,674 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-09-01 00:54:47,677 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:47,680 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-09-01 00:54:47,690 [ scc.git] DEBUG Auto-merging package-lock.json
2025-09-01 00:54:47,690 [ scc.git] DEBUG Auto-merging package.json
2025-09-01 00:54:47,691 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-01 00:54:47,695 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-09-01 00:54:47,695 [ scc.git] DEBUG package.json | 2 +-
2025-09-01 00:54:47,695 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-09-01 00:54:47,926 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:48,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:54:48,126 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-09-01 00:54:48,129 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:48,132 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-09-01 00:54:48,141 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-01 00:54:48,144 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-01 00:54:48,144 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-01 00:54:48,378 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:48,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:54:48,567 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-01 00:54:48,609 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:54:48,609 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:48,611 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-01 00:54:48,651 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-01 00:54:48,655 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed319cedd0> has no local changes
2025-09-01 00:54:48,655 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#522 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/)'
2025-09-01 00:54:48,661 [ scc.git] DEBUG [detached HEAD 780c39b] merge master -Dorg -Ssuccess-only
2025-09-01 00:54:48,661 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:54:48,662 [ scc.repo] DEBUG ## PRs found:
2025-09-01 00:54:48,819 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:49,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 2
2025-09-01 00:54:49,033 [ scc.repo] DEBUG ## Branches found:
2025-09-01 00:54:49,033 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-09-01 00:54:49,033 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:54:49,034 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:49,036 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-01 00:54:49,038 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-01 00:54:49,038 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-01 00:54:49,041 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-01 00:54:49,045 [ scc.git] DEBUG Already up to date.
2025-09-01 00:54:49,045 [ scc.git] DEBUG ## Unique users: []
2025-09-01 00:54:49,045 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:54:49,045 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:49,047 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-01 00:54:49,087 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:54:49,087 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:49,089 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-01 00:54:49,129 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-01 00:54:49,132 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed30031850> has no local changes
2025-09-01 00:54:49,132 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Generated by OMERO-plugins-push#522 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/)'
2025-09-01 00:54:49,138 [ scc.git] DEBUG [detached HEAD a21a989] merge master -Dorg -Ssuccess-only
2025-09-01 00:54:49,139 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:54:49,139 [ scc.repo] DEBUG ## PRs found:
2025-09-01 00:54:49,286 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:49,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-09-01 00:54:49,866 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:50,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-09-01 00:54:50,418 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:50,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-09-01 00:54:50,930 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:51,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-01 00:54:51,470 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:51,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:54:51,975 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:52,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-01 00:54:52,486 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:52,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-01 00:54:53,025 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:53,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-09-01 00:54:53,486 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:53,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-01 00:54:53,973 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:54,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-09-01 00:54:54,182 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-09-01 00:54:54,433 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:54,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-09-01 00:54:54,716 [ scc.repo] DEBUG ## Branches found:
2025-09-01 00:54:54,716 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-09-01 00:54:54,716 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:54:54,717 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:54,719 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-01 00:54:54,722 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-01 00:54:54,722 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-01 00:54:54,725 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-01 00:54:54,728 [ scc.git] DEBUG Already up to date.
2025-09-01 00:54:54,728 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-09-01 00:54:55,013 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-09-01 00:54:55,013 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-09-01 00:54:55,017 [ scc.git] DEBUG ## Unique users: []
2025-09-01 00:54:55,017 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:54:55,017 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:55,019 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-09-01 00:54:55,022 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:55,025 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-09-01 00:54:55,033 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-01 00:54:55,036 [ scc.git] DEBUG setup.py | 4 +-
2025-09-01 00:54:55,036 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-09-01 00:54:55,036 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-09-01 00:54:55,036 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-09-01 00:54:55,039 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:55,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:54:55,245 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-01 00:54:55,285 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:54:55,285 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:55,288 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-01 00:54:55,328 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-01 00:54:55,332 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed30018e10> has no local changes
2025-09-01 00:54:55,332 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Generated by OMERO-plugins-push#522 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/)'
2025-09-01 00:54:55,339 [ scc.git] DEBUG [detached HEAD 93f44e4] merge master -Dorg -Ssuccess-only
2025-09-01 00:54:55,339 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:54:55,339 [ scc.repo] DEBUG ## PRs found:
2025-09-01 00:54:55,497 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:55,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-09-01 00:54:56,058 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:56,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-09-01 00:54:56,609 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:56,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-09-01 00:54:57,103 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:57,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-09-01 00:54:57,691 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:57,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:54:58,200 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:58,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-09-01 00:54:58,787 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:59,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-09-01 00:54:59,016 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-09-01 00:54:59,016 [ scc.repo] DEBUG ## Branches found:
2025-09-01 00:54:59,016 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-09-01 00:54:59,016 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:54:59,016 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:59,019 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-01 00:54:59,021 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-01 00:54:59,021 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-01 00:54:59,024 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-01 00:54:59,028 [ scc.git] DEBUG Already up to date.
2025-09-01 00:54:59,028 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-09-01 00:54:59,308 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-09-01 00:54:59,308 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-09-01 00:54:59,312 [ scc.git] DEBUG ## Unique users: []
2025-09-01 00:54:59,312 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:54:59,312 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:59,314 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-01 00:54:59,318 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:59,320 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-01 00:54:59,329 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-09-01 00:54:59,329 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-09-01 00:54:59,329 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-09-01 00:54:59,329 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-09-01 00:54:59,329 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-09-01 00:54:59,329 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-09-01 00:54:59,330 [ scc.git] DEBUG Auto-merging setup.py
2025-09-01 00:54:59,330 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-09-01 00:54:59,330 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-01 00:54:59,330 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-01 00:54:59,333 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-09-01 00:54:59,337 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-09-01 00:54:59,340 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:54:59,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:54:59,560 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-01 00:54:59,563 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-09-01 00:54:59,566 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#522](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- omero_signup/signup_settings.py
- setup.py
- omero_signup/views.py
--conflicts
2025-09-01 00:54:59,569 [ scc.config] DEBUG Found github.token
2025-09-01 00:54:59,569 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-09-01 00:54:59,569 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-01 00:54:59,609 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:54:59,609 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:54:59,611 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-01 00:54:59,652 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-01 00:54:59,655 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed319ce210> has no local changes
2025-09-01 00:54:59,656 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#522 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/)'
2025-09-01 00:54:59,664 [ scc.git] DEBUG [detached HEAD 69198a9] merge master -Dorg -Ssuccess-only
2025-09-01 00:54:59,664 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:54:59,664 [ scc.repo] DEBUG ## PRs found:
2025-09-01 00:54:59,812 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:00,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-09-01 00:55:00,386 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:00,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-09-01 00:55:00,950 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:01,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-09-01 00:55:01,556 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:01,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:55:02,120 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:02,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-01 00:55:02,634 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:02,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-09-01 00:55:03,199 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:03,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-09-01 00:55:03,421 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-09-01 00:55:03,672 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:04,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-09-01 00:55:04,424 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:04,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-09-01 00:55:04,946 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:05,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-09-01 00:55:05,517 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:05,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:55:06,043 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:06,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-01 00:55:06,562 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:06,849 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-09-01 00:55:07,101 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:07,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-09-01 00:55:07,584 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:07,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-09-01 00:55:08,132 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:08,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-09-01 00:55:08,644 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:08,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-09-01 00:55:09,169 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:09,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:55:09,701 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:09,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-09-01 00:55:10,230 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:10,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-09-01 00:55:10,447 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-09-01 00:55:10,447 [ scc.repo] DEBUG ## Branches found:
2025-09-01 00:55:10,447 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-09-01 00:55:10,447 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:10,447 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:10,450 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-01 00:55:10,453 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-01 00:55:10,453 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-01 00:55:10,456 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-01 00:55:10,459 [ scc.git] DEBUG Already up to date.
2025-09-01 00:55:10,459 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-09-01 00:55:10,776 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-09-01 00:55:10,776 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-09-01 00:55:10,781 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-09-01 00:55:11,070 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-09-01 00:55:11,070 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-09-01 00:55:11,075 [ scc.git] DEBUG ## Unique users: []
2025-09-01 00:55:11,075 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:11,075 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:11,077 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-09-01 00:55:11,082 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:11,084 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-09-01 00:55:11,096 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-01 00:55:11,100 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-09-01 00:55:11,100 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-09-01 00:55:11,100 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-09-01 00:55:11,100 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-09-01 00:55:11,100 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-09-01 00:55:11,100 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-09-01 00:55:11,100 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-09-01 00:55:11,102 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-09-01 00:55:11,102 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-09-01 00:55:11,103 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-09-01 00:55:11,103 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:11,103 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-09-01 00:55:11,103 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-09-01 00:55:11,103 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-09-01 00:55:11,103 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-09-01 00:55:11,103 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-09-01 00:55:11,103 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-09-01 00:55:11,103 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-09-01 00:55:11,103 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-09-01 00:55:11,103 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-09-01 00:55:11,103 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-09-01 00:55:11,103 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-09-01 00:55:11,103 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-09-01 00:55:11,103 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-09-01 00:55:11,103 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-09-01 00:55:11,103 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-09-01 00:55:11,103 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-09-01 00:55:11,103 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-09-01 00:55:11,103 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-09-01 00:55:11,103 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-09-01 00:55:11,103 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-09-01 00:55:11,103 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-09-01 00:55:11,103 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-09-01 00:55:11,103 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-09-01 00:55:11,103 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-09-01 00:55:11,103 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-09-01 00:55:11,103 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-09-01 00:55:11,103 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-09-01 00:55:11,103 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-09-01 00:55:11,104 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-09-01 00:55:11,104 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-09-01 00:55:11,104 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-09-01 00:55:11,104 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-09-01 00:55:11,104 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-09-01 00:55:11,104 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-09-01 00:55:11,104 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-09-01 00:55:11,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:11,302 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-09-01 00:55:11,307 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:11,309 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-09-01 00:55:11,319 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-01 00:55:11,322 [ scc.git] DEBUG docker | 1 +
2025-09-01 00:55:11,322 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-09-01 00:55:11,554 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:11,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:11,741 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-01 00:55:11,784 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:11,784 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:11,786 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-01 00:55:11,825 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-01 00:55:11,830 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed3006e090> has no local changes
2025-09-01 00:55:11,830 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#522 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/)'
2025-09-01 00:55:11,837 [ scc.git] DEBUG [detached HEAD a7076b3] merge master -Dorg -Ssuccess-only
2025-09-01 00:55:11,838 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:11,838 [ scc.repo] DEBUG ## PRs found:
2025-09-01 00:55:11,993 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:12,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2
2025-09-01 00:55:12,219 [ scc.repo] DEBUG ## Branches found:
2025-09-01 00:55:12,219 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-09-01 00:55:12,219 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:12,219 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:12,222 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-01 00:55:12,224 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-01 00:55:12,224 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-01 00:55:12,227 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-01 00:55:12,230 [ scc.git] DEBUG Already up to date.
2025-09-01 00:55:12,230 [ scc.git] DEBUG ## Unique users: []
2025-09-01 00:55:12,230 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:12,230 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:12,232 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-01 00:55:12,272 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:12,272 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:12,274 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-01 00:55:12,312 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-01 00:55:12,316 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed300a0790> has no local changes
2025-09-01 00:55:12,316 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Generated by OMERO-plugins-push#522 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/)'
2025-09-01 00:55:12,322 [ scc.git] DEBUG [detached HEAD 7992448] merge master -Dorg -Ssuccess-only
2025-09-01 00:55:12,322 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:12,322 [ scc.repo] DEBUG ## PRs found:
2025-09-01 00:55:12,471 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:12,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2
2025-09-01 00:55:12,678 [ scc.repo] DEBUG ## Branches found:
2025-09-01 00:55:12,678 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-09-01 00:55:12,678 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:12,678 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:12,681 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-01 00:55:12,683 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-01 00:55:12,683 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-01 00:55:12,686 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-01 00:55:12,694 [ scc.git] DEBUG Updating deab817..160d894
2025-09-01 00:55:12,930 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:13,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-09-01 00:55:13,386 [ scc.git] DEBUG ## Unique users: []
2025-09-01 00:55:13,386 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:13,386 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:13,389 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-01 00:55:13,429 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:13,429 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:13,432 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-01 00:55:13,471 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-01 00:55:13,475 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed30068dd0> has no local changes
2025-09-01 00:55:13,475 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Generated by OMERO-plugins-push#522 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/)'
2025-09-01 00:55:13,481 [ scc.git] DEBUG [detached HEAD e9efb5c] merge master -Dorg -Ssuccess-only
2025-09-01 00:55:13,482 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:13,482 [ scc.git] INFO Overriding base-branch from master to main
2025-09-01 00:55:13,482 [ scc.repo] DEBUG ## PRs found:
2025-09-01 00:55:13,638 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:13,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-09-01 00:55:14,202 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:14,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-09-01 00:55:14,688 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:14,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8 HTTP/1.1" 200 None
2025-09-01 00:55:15,240 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:15,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:55:15,770 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:16,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-01 00:55:16,394 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:16,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/cf419dd60e4884ee15050271c97a6268e6e998b8 HTTP/1.1" 200 None
2025-09-01 00:55:16,929 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:17,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/cf419dd60e4884ee15050271c97a6268e6e998b8?per_page=1 HTTP/1.1" 200 2
2025-09-01 00:55:17,158 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-09-01 00:55:17,410 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:17,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/20 HTTP/1.1" 200 None
2025-09-01 00:55:17,934 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:18,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/20/comments HTTP/1.1" 200 None
2025-09-01 00:55:18,464 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:18,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-09-01 00:55:19,029 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:19,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:55:19,572 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:19,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-01 00:55:20,092 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:20,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/76b47bafa934219c6487579e3df167219ea56fec HTTP/1.1" 200 None
2025-09-01 00:55:20,629 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:20,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/76b47bafa934219c6487579e3df167219ea56fec?per_page=1 HTTP/1.1" 200 2
2025-09-01 00:55:20,837 [ scc.repo] DEBUG - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-09-01 00:55:21,089 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:21,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18 HTTP/1.1" 200 None
2025-09-01 00:55:21,618 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:21,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/18/comments HTTP/1.1" 200 None
2025-09-01 00:55:22,114 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:22,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec HTTP/1.1" 200 None
2025-09-01 00:55:22,672 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:22,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:55:23,211 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:23,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/fec20a6fff48522621889a53c632b0cd439e57ec/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-01 00:55:23,736 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:24,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-09-01 00:55:24,265 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:24,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-09-01 00:55:24,786 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:25,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-09-01 00:55:25,296 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:25,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-09-01 00:55:25,864 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:26,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:55:26,359 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:26,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-09-01 00:55:26,898 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:27,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-09-01 00:55:27,127 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-09-01 00:55:27,127 [ scc.repo] DEBUG ## Branches found:
2025-09-01 00:55:27,127 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-09-01 00:55:27,127 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:27,127 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:27,130 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-09-01 00:55:27,133 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-01 00:55:27,133 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-09-01 00:55:27,136 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-09-01 00:55:27,139 [ scc.git] DEBUG Already up to date.
2025-09-01 00:55:27,139 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-09-01 00:55:27,426 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-01 00:55:27,426 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-09-01 00:55:27,430 [ scc.git] DEBUG Calling 'git fetch origin pull/20/head'
2025-09-01 00:55:27,713 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-01 00:55:27,714 [ scc.git] DEBUG * branch refs/pull/20/head -> FETCH_HEAD
2025-09-01 00:55:27,718 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-09-01 00:55:28,002 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-01 00:55:28,002 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-09-01 00:55:28,006 [ scc.git] DEBUG ## Unique users: []
2025-09-01 00:55:28,006 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:28,006 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:28,008 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-01 00:55:28,011 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:28,014 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-01 00:55:28,021 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-09-01 00:55:28,021 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-09-01 00:55:28,022 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-01 00:55:28,022 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-01 00:55:28,025 [ scc.git] DEBUG Calling 'git reset --hard 8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-09-01 00:55:28,029 [ scc.git] DEBUG HEAD is now at 8f3c313 Merge pull request #17 from jburel/build
2025-09-01 00:55:28,032 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:28,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:28,268 [ scc.git] DEBUG Calling 'git merge-base 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-01 00:55:28,271 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2025-09-01 00:55:28,274 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#522](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-09-01 00:55:28,276 [ scc.config] DEBUG Found github.token
2025-09-01 00:55:28,277 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-09-01 00:55:28,277 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...76b47bafa934219c6487579e3df167219ea56fec'
2025-09-01 00:55:28,280 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:28,282 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 20 (Use zarr_format=2 for .zarray and chunk endpoints) 76b47bafa934219c6487579e3df167219ea56fec'
2025-09-01 00:55:28,290 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-01 00:55:28,292 [ scc.git] DEBUG omero_web_zarr/views.py | 3 ++-
2025-09-01 00:55:28,292 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 1 deletion(-)
2025-09-01 00:55:28,520 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:28,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:28,746 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf419dd60e4884ee15050271c97a6268e6e998b8'
2025-09-01 00:55:28,750 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:28,752 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) cf419dd60e4884ee15050271c97a6268e6e998b8'
2025-09-01 00:55:28,761 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-09-01 00:55:28,762 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-01 00:55:28,766 [ scc.git] DEBUG README.rst | 3 +
2025-09-01 00:55:28,766 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2025-09-01 00:55:28,766 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-09-01 00:55:28,766 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2025-09-01 00:55:28,766 [ scc.git] DEBUG setup.py | 5 +-
2025-09-01 00:55:28,766 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2025-09-01 00:55:28,766 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-09-01 00:55:28,998 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:29,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:29,186 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-01 00:55:29,226 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:29,226 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:29,229 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-01 00:55:29,269 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-01 00:55:29,273 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed31a53490> has no local changes
2025-09-01 00:55:29,273 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#522 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/)'
2025-09-01 00:55:29,279 [ scc.git] DEBUG [detached HEAD 37e8fed] merge master -Dorg -Ssuccess-only
2025-09-01 00:55:29,279 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:29,279 [ scc.repo] DEBUG ## PRs found:
2025-09-01 00:55:29,438 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:29,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2
2025-09-01 00:55:29,660 [ scc.repo] DEBUG ## Branches found:
2025-09-01 00:55:29,660 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-09-01 00:55:29,660 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:29,660 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:29,662 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-01 00:55:29,664 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-01 00:55:29,664 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-01 00:55:29,667 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-01 00:55:29,670 [ scc.git] DEBUG Already up to date.
2025-09-01 00:55:29,670 [ scc.git] DEBUG ## Unique users: []
2025-09-01 00:55:29,670 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:29,671 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:29,673 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-01 00:55:29,713 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:29,713 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:29,715 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-01 00:55:29,755 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-01 00:55:29,759 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed34007a90> has no local changes
2025-09-01 00:55:29,759 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Generated by OMERO-plugins-push#522 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/)'
2025-09-01 00:55:29,766 [ scc.git] DEBUG [detached HEAD 4aae9d1] merge master -Dorg -Ssuccess-only
2025-09-01 00:55:29,766 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:29,766 [ scc.repo] DEBUG ## PRs found:
2025-09-01 00:55:29,912 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:30,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2
2025-09-01 00:55:30,132 [ scc.repo] DEBUG ## Branches found:
2025-09-01 00:55:30,132 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-09-01 00:55:30,132 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:30,132 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:30,134 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-01 00:55:30,137 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-01 00:55:30,137 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-01 00:55:30,140 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-01 00:55:30,143 [ scc.git] DEBUG Already up to date.
2025-09-01 00:55:30,143 [ scc.git] DEBUG ## Unique users: []
2025-09-01 00:55:30,143 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:30,143 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:30,145 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-01 00:55:30,186 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:30,186 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:30,188 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-01 00:55:30,228 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-01 00:55:30,231 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed300eead0> has no local changes
2025-09-01 00:55:30,231 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Generated by OMERO-plugins-push#522 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/)'
2025-09-01 00:55:30,238 [ scc.git] DEBUG [detached HEAD 4aaf240] merge master -Dorg -Ssuccess-only
2025-09-01 00:55:30,238 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:30,238 [ scc.repo] DEBUG ## PRs found:
2025-09-01 00:55:30,384 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:30,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-09-01 00:55:30,975 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:31,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-09-01 00:55:31,477 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:31,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-09-01 00:55:32,018 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:32,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-09-01 00:55:32,564 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:32,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:55:33,071 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:33,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-09-01 00:55:33,553 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:33,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-09-01 00:55:33,760 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-09-01 00:55:33,760 [ scc.repo] DEBUG ## Branches found:
2025-09-01 00:55:33,760 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-09-01 00:55:33,760 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:33,760 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:33,763 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-01 00:55:33,766 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-01 00:55:33,766 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-01 00:55:33,769 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-01 00:55:33,772 [ scc.git] DEBUG Already up to date.
2025-09-01 00:55:33,772 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-09-01 00:55:34,051 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-09-01 00:55:34,052 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-09-01 00:55:34,056 [ scc.git] DEBUG ## Unique users: []
2025-09-01 00:55:34,056 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:34,056 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:34,058 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-01 00:55:34,061 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:34,063 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-01 00:55:34,072 [ scc.git] DEBUG Auto-merging Dockerfile
2025-09-01 00:55:34,072 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-09-01 00:55:34,073 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-01 00:55:34,073 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-01 00:55:34,076 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-09-01 00:55:34,081 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-09-01 00:55:34,083 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:34,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:34,272 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-01 00:55:34,275 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-09-01 00:55:34,279 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#522](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-09-01 00:55:34,281 [ scc.config] DEBUG Found github.token
2025-09-01 00:55:34,281 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-09-01 00:55:34,281 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-01 00:55:34,321 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:34,321 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:34,323 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-01 00:55:34,361 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-01 00:55:34,365 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed300e5a90> has no local changes
2025-09-01 00:55:34,365 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#522 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/)'
2025-09-01 00:55:34,372 [ scc.git] DEBUG [detached HEAD 463d740] merge master -Dorg -Ssuccess-only
2025-09-01 00:55:34,372 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:34,372 [ scc.git] INFO Overriding base-branch from master to develop
2025-09-01 00:55:34,372 [ scc.repo] DEBUG ## PRs found:
2025-09-01 00:55:34,524 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:34,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-09-01 00:55:35,219 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:35,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-09-01 00:55:35,736 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:35,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-09-01 00:55:36,229 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:36,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-09-01 00:55:36,768 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:37,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:55:37,287 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:37,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-01 00:55:37,812 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:38,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-09-01 00:55:38,283 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:38,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-09-01 00:55:38,487 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-09-01 00:55:38,739 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:39,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-09-01 00:55:39,288 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:39,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-09-01 00:55:39,772 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:40,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-09-01 00:55:40,329 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:40,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-01 00:55:40,871 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:41,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-09-01 00:55:41,351 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:41,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-09-01 00:55:41,556 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-09-01 00:55:41,807 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:42,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-09-01 00:55:42,377 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:42,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-09-01 00:55:42,914 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:43,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-09-01 00:55:43,449 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:43,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-09-01 00:55:43,700 [ scc.repo] DEBUG ## Branches found:
2025-09-01 00:55:43,700 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-09-01 00:55:43,700 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:43,700 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:43,703 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-09-01 00:55:43,705 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-01 00:55:43,705 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-09-01 00:55:43,708 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-09-01 00:55:43,719 [ scc.git] DEBUG Updating 4b4c755..573db34
2025-09-01 00:55:43,951 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:44,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-09-01 00:55:44,681 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:45,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-09-01 00:55:45,129 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-09-01 00:55:45,443 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-09-01 00:55:45,443 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-09-01 00:55:45,447 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-09-01 00:55:45,751 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-09-01 00:55:45,751 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-09-01 00:55:45,756 [ scc.git] DEBUG ## Unique users: []
2025-09-01 00:55:45,756 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:45,756 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:45,758 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-01 00:55:45,764 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:45,766 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-01 00:55:45,777 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-09-01 00:55:45,778 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-01 00:55:45,778 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-01 00:55:45,781 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150'
2025-09-01 00:55:45,785 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0
2025-09-01 00:55:45,787 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:45,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:45,990 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-01 00:55:45,996 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150'
2025-09-01 00:55:46,000 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#522](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-09-01 00:55:46,002 [ scc.config] DEBUG Found github.token
2025-09-01 00:55:46,002 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-09-01 00:55:46,002 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-09-01 00:55:46,007 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:46,009 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-09-01 00:55:46,019 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-01 00:55:46,023 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-09-01 00:55:46,023 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-09-01 00:55:46,242 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:46,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:46,460 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-01 00:55:46,501 [ scc.git] DEBUG Get sha1 of %s
2025-09-01 00:55:46,501 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-01 00:55:46,503 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-01 00:55:46,542 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-01 00:55:46,546 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed30088ed0> has no local changes
2025-09-01 00:55:46,546 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#522 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/)'
2025-09-01 00:55:46,553 [ scc.git] DEBUG [detached HEAD 66c5746] merge master -Dorg -Ssuccess-only
2025-09-01 00:55:46,553 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:46,553 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-01 00:55:46,631 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-09-01 00:55:46,712 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:46,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:46,920 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-09-01 00:55:46,922 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-09-01 00:55:47,167 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:47,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:47,397 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-09-01 00:55:47,399 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-09-01 00:55:47,644 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:47,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:47,842 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-09-01 00:55:47,844 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-09-01 00:55:48,089 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:48,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:48,297 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-09-01 00:55:48,542 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:48,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:48,743 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-09-01 00:55:48,745 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-09-01 00:55:48,990 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:49,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:49,207 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-09-01 00:55:49,209 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-09-01 00:55:49,454 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:49,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:49,649 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-09-01 00:55:49,652 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-09-01 00:55:49,897 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:50,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:50,095 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-09-01 00:55:50,097 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-09-01 00:55:50,342 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:50,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:50,540 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-09-01 00:55:50,542 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-09-01 00:55:50,787 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:50,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:51,002 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-09-01 00:55:51,004 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-09-01 00:55:51,250 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:51,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:51,457 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-09-01 00:55:51,459 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-09-01 00:55:51,705 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:51,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:51,911 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-09-01 00:55:51,913 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-09-01 00:55:52,158 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:52,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:52,364 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-09-01 00:55:52,609 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:52,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:52,814 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-09-01 00:55:53,059 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:53,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:53,285 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-09-01 00:55:53,287 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-09-01 00:55:53,533 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:53,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:53,733 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-09-01 00:55:53,978 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:54,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:54,183 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-09-01 00:55:54,428 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:54,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:54,630 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-09-01 00:55:54,632 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-09-01 00:55:54,877 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:55,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:55,072 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-09-01 00:55:55,074 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-09-01 00:55:55,319 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:55,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:55,518 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-09-01 00:55:55,520 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-09-01 00:55:55,765 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:55,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:55,988 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-09-01 00:55:55,990 [ scc.config] DEBUG Found submodule.scripts.url
2025-09-01 00:55:56,236 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2025-09-01 00:55:56,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-01 00:55:56,449 [ scc.config] DEBUG Found submodule.scripts.branch
2025-09-01 00:55:56,449 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-01 00:55:56,538 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed31bf7590> has local changes
2025-09-01 00:55:56,538 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 180 will-moore 'Register command'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
Conflicting PRs (not included):
- PR 616 Rdornier 'Fix labels around border'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 18 will-moore 'Build' (status: failure)
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Already up to date.
Merged PRs:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Repository: openmicroscopy/omero-webtest
Already up to date.
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..573db34
Previously merged:
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#522 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/522/)'
2025-09-01 00:55:56,551 [ scc.git] DEBUG [detached HEAD 73ca37b] merge master -Dorg -Ssuccess-only
2025-09-01 00:55:56,551 [ scc.merge] INFO Repository: ome/omero-plugins
2025-09-01 00:55:56,551 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-09-01 00:55:56,551 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,552 [ scc.merge] INFO
2025-09-01 00:55:56,552 [ scc.merge] INFO Merged PRs:
2025-09-01 00:55:56,552 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-09-01 00:55:56,552 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-09-01 00:55:56,552 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-09-01 00:55:56,552 [ scc.merge] INFO
2025-09-01 00:55:56,552 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-09-01 00:55:56,552 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,552 [ scc.merge] INFO
2025-09-01 00:55:56,552 [ scc.merge] INFO
2025-09-01 00:55:56,552 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-09-01 00:55:56,552 [ scc.merge] INFO Excluded PRs:
2025-09-01 00:55:56,552 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-09-01 00:55:56,552 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,552 [ scc.merge] INFO
2025-09-01 00:55:56,552 [ scc.merge] INFO
2025-09-01 00:55:56,552 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-09-01 00:55:56,552 [ scc.merge] INFO Excluded PRs:
2025-09-01 00:55:56,552 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-09-01 00:55:56,552 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-09-01 00:55:56,552 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,552 [ scc.merge] INFO
2025-09-01 00:55:56,552 [ scc.merge] INFO Merged PRs:
2025-09-01 00:55:56,552 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-09-01 00:55:56,552 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-09-01 00:55:56,552 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-09-01 00:55:56,552 [ scc.merge] INFO
2025-09-01 00:55:56,552 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-09-01 00:55:56,552 [ scc.merge] INFO Excluded PRs:
2025-09-01 00:55:56,552 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-09-01 00:55:56,552 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
2025-09-01 00:55:56,552 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-09-01 00:55:56,552 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-09-01 00:55:56,552 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-09-01 00:55:56,552 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-09-01 00:55:56,553 [ scc.merge] INFO Updating 11d3587..f7eea7c
2025-09-01 00:55:56,553 [ scc.merge] INFO Previously merged:
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-01 00:55:56,553 [ scc.merge] INFO
2025-09-01 00:55:56,553 [ scc.merge] INFO Merged PRs:
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 180 will-moore 'Register command'
2025-09-01 00:55:56,553 [ scc.merge] INFO
2025-09-01 00:55:56,553 [ scc.merge] INFO Repository: ome/omero-figure
2025-09-01 00:55:56,553 [ scc.merge] INFO Excluded PRs:
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-09-01 00:55:56,553 [ scc.merge] INFO Updating 9cc36cde..d2c6f5bc
2025-09-01 00:55:56,553 [ scc.merge] INFO Previously merged:
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-01 00:55:56,553 [ scc.merge] INFO
2025-09-01 00:55:56,553 [ scc.merge] INFO Merged PRs:
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-09-01 00:55:56,553 [ scc.merge] INFO - PR 639 dependabot[bot] 'Bump vite from 6.2.6 to 6.2.7'
2025-09-01 00:55:56,553 [ scc.merge] INFO
2025-09-01 00:55:56,553 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-09-01 00:55:56,554 [ scc.merge] INFO
2025-09-01 00:55:56,554 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-09-01 00:55:56,554 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,554 [ scc.merge] INFO
2025-09-01 00:55:56,554 [ scc.merge] INFO Merged PRs:
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-09-01 00:55:56,554 [ scc.merge] INFO
2025-09-01 00:55:56,554 [ scc.merge] INFO Repository: ome/omero-gallery
2025-09-01 00:55:56,554 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,554 [ scc.merge] INFO
2025-09-01 00:55:56,554 [ scc.merge] INFO Merged PRs:
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-09-01 00:55:56,554 [ scc.merge] INFO
2025-09-01 00:55:56,554 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-09-01 00:55:56,554 [ scc.merge] INFO
2025-09-01 00:55:56,554 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-09-01 00:55:56,554 [ scc.merge] INFO Excluded PRs:
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-09-01 00:55:56,554 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-09-01 00:55:56,554 [ scc.merge] INFO Previously merged:
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-01 00:55:56,554 [ scc.merge] INFO
2025-09-01 00:55:56,554 [ scc.merge] INFO Merged PRs:
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-09-01 00:55:56,554 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-09-01 00:55:56,555 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-09-01 00:55:56,555 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-09-01 00:55:56,555 [ scc.merge] INFO
2025-09-01 00:55:56,555 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-01 00:55:56,555 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-09-01 00:55:56,555 [ scc.merge] INFO
2025-09-01 00:55:56,555 [ scc.merge] INFO Repository: ome/omero-mapr
2025-09-01 00:55:56,555 [ scc.merge] INFO Excluded PRs:
2025-09-01 00:55:56,555 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-09-01 00:55:56,555 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,555 [ scc.merge] INFO
2025-09-01 00:55:56,555 [ scc.merge] INFO Merged PRs:
2025-09-01 00:55:56,555 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-09-01 00:55:56,555 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-01 00:55:56,555 [ scc.merge] INFO
2025-09-01 00:55:56,555 [ scc.merge] INFO Repository: ome/omero-metadata
2025-09-01 00:55:56,555 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-09-01 00:55:56,555 [ scc.merge] INFO Previously merged:
2025-09-01 00:55:56,555 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-01 00:55:56,555 [ scc.merge] INFO
2025-09-01 00:55:56,555 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-01 00:55:56,555 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-09-01 00:55:56,555 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-09-01 00:55:56,555 [ scc.merge] INFO
2025-09-01 00:55:56,555 [ scc.merge] INFO Repository: ome/omero-parade
2025-09-01 00:55:56,555 [ scc.merge] INFO Excluded PRs:
2025-09-01 00:55:56,555 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-09-01 00:55:56,555 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-09-01 00:55:56,555 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-09-01 00:55:56,555 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-09-01 00:55:56,555 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,555 [ scc.merge] INFO
2025-09-01 00:55:56,555 [ scc.merge] INFO Merged PRs:
2025-09-01 00:55:56,555 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-09-01 00:55:56,555 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-09-01 00:55:56,555 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-01 00:55:56,555 [ scc.merge] INFO
2025-09-01 00:55:56,555 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-09-01 00:55:56,556 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,556 [ scc.merge] INFO
2025-09-01 00:55:56,556 [ scc.merge] INFO
2025-09-01 00:55:56,556 [ scc.merge] INFO Repository: ome/omero-rois
2025-09-01 00:55:56,556 [ scc.merge] INFO Excluded PRs:
2025-09-01 00:55:56,556 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-09-01 00:55:56,556 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,556 [ scc.merge] INFO
2025-09-01 00:55:56,556 [ scc.merge] INFO Merged PRs:
2025-09-01 00:55:56,556 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-09-01 00:55:56,556 [ scc.merge] INFO
2025-09-01 00:55:56,556 [ scc.merge] INFO Repository: ome/omero-signup
2025-09-01 00:55:56,556 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,556 [ scc.merge] INFO
2025-09-01 00:55:56,556 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-01 00:55:56,556 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-09-01 00:55:56,556 [ scc.merge] INFO
2025-09-01 00:55:56,556 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-09-01 00:55:56,556 [ scc.merge] INFO Excluded PRs:
2025-09-01 00:55:56,556 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-09-01 00:55:56,556 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-09-01 00:55:56,556 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-09-01 00:55:56,556 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,556 [ scc.merge] INFO
2025-09-01 00:55:56,556 [ scc.merge] INFO Merged PRs:
2025-09-01 00:55:56,556 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-09-01 00:55:56,556 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-09-01 00:55:56,556 [ scc.merge] INFO
2025-09-01 00:55:56,556 [ scc.merge] INFO Repository: ome/omero-upload
2025-09-01 00:55:56,556 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,556 [ scc.merge] INFO
2025-09-01 00:55:56,556 [ scc.merge] INFO
2025-09-01 00:55:56,556 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-09-01 00:55:56,556 [ scc.merge] INFO Updating deab817..160d894
2025-09-01 00:55:56,556 [ scc.merge] INFO Previously merged:
2025-09-01 00:55:56,556 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-09-01 00:55:56,556 [ scc.merge] INFO
2025-09-01 00:55:56,556 [ scc.merge] INFO
2025-09-01 00:55:56,557 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-09-01 00:55:56,557 [ scc.merge] INFO Excluded PRs:
2025-09-01 00:55:56,557 [ scc.merge] INFO - PR 18 will-moore 'Build' (status: failure)
2025-09-01 00:55:56,557 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-09-01 00:55:56,557 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,557 [ scc.merge] INFO
2025-09-01 00:55:56,557 [ scc.merge] INFO Merged PRs:
2025-09-01 00:55:56,557 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-09-01 00:55:56,557 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-09-01 00:55:56,557 [ scc.merge] INFO
2025-09-01 00:55:56,557 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-01 00:55:56,557 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-09-01 00:55:56,557 [ scc.merge] INFO
2025-09-01 00:55:56,557 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-09-01 00:55:56,557 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,557 [ scc.merge] INFO
2025-09-01 00:55:56,557 [ scc.merge] INFO
2025-09-01 00:55:56,557 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-09-01 00:55:56,557 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,557 [ scc.merge] INFO
2025-09-01 00:55:56,557 [ scc.merge] INFO
2025-09-01 00:55:56,557 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-09-01 00:55:56,557 [ scc.merge] INFO Already up to date.
2025-09-01 00:55:56,557 [ scc.merge] INFO
2025-09-01 00:55:56,557 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-01 00:55:56,557 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-09-01 00:55:56,557 [ scc.merge] INFO
2025-09-01 00:55:56,557 [ scc.merge] INFO Repository: ome/scripts
2025-09-01 00:55:56,557 [ scc.merge] INFO Excluded PRs:
2025-09-01 00:55:56,557 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-09-01 00:55:56,557 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-09-01 00:55:56,557 [ scc.merge] INFO Updating 4b4c755..573db34
2025-09-01 00:55:56,557 [ scc.merge] INFO Previously merged:
2025-09-01 00:55:56,557 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-09-01 00:55:56,557 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-09-01 00:55:56,557 [ scc.merge] INFO
2025-09-01 00:55:56,557 [ scc.merge] INFO Merged PRs:
2025-09-01 00:55:56,557 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-09-01 00:55:56,558 [ scc.merge] INFO
2025-09-01 00:55:56,558 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-01 00:55:56,558 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-09-01 00:55:56,558 [ scc.merge] INFO
2025-09-01 00:55:56,558 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-09-01 00:55:56,558 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,560 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-09-01 00:55:56,560 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,562 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,562 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-09-01 00:55:56,562 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,565 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,565 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-09-01 00:55:56,565 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,567 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,567 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-09-01 00:55:56,567 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,569 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,569 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-09-01 00:55:56,569 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,571 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,571 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-09-01 00:55:56,572 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,574 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,574 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-09-01 00:55:56,574 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,576 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,576 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-09-01 00:55:56,576 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,578 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,579 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-09-01 00:55:56,579 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,581 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,581 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-09-01 00:55:56,581 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,583 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,583 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-09-01 00:55:56,583 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,586 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,586 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-09-01 00:55:56,586 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,588 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,588 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-09-01 00:55:56,588 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,590 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,590 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-09-01 00:55:56,590 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,592 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,592 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-09-01 00:55:56,593 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,595 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,595 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-09-01 00:55:56,595 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,597 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,597 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-09-01 00:55:56,597 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,599 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,599 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-09-01 00:55:56,599 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,602 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,602 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-09-01 00:55:56,602 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,604 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,604 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-09-01 00:55:56,604 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,606 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,606 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-09-01 00:55:56,606 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,608 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-01 00:55:56,609 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-09-01 00:55:56,609 [ scc.git] DEBUG Calling 'git remote'
2025-09-01 00:55:56,611 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 18a6bf5] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 0d47466] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-09-01 00:56:46,243 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-09-01 00:56:56,349 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-09-01 00:56:59,129 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-09-01 00:57:04,716 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-09-01 00:57:43,969 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/9161e9ff/images/svgs/logo.svg){kind=logo}
