05:59:51Started by upstream project "Trigger" build number 60805:59:51originally caused by:
05:59:51 Started by user devspace05:59:51Running as SYSTEM
05:59:51Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
05:59:51The recommended git tool is: NONE
05:59:51No credentials specified
05:59:51 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
05:59:51Fetching changes from the remote Git repository
05:59:51 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
05:59:51Fetching upstream changes from https://github.com/ome/openmicroscopy.git05:59:51 > git --version # timeout=10
05:59:51 > git --version # 'git version 2.43.5'
05:59:51 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
05:59:52 > git rev-parse origin/develop^{commit} # timeout=10
05:59:52Checking out Revision 3503438a652ff5c436d0370e6643a16cb45f9b52 (origin/develop)
05:59:52 > git config core.sparsecheckout # timeout=10
05:59:52 > git checkout -f 3503438a652ff5c436d0370e6643a16cb45f9b52 # timeout=30
05:59:52Commit message: "Merge pull request #6436 from will-moore/fix_getObjects_by_group"
05:59:52 > git rev-list --no-walk 3503438a652ff5c436d0370e6643a16cb45f9b52 # timeout=10
05:59:52Cleaning workspace
05:59:52 > git rev-parse --verify HEAD # timeout=10
05:59:52Resetting working tree
05:59:52 > git reset --hard # timeout=10
05:59:52 > git clean -fdx # timeout=10
05:59:52Copied 1 artifact from "OMERO-python-superbuild-build" build number 50805:59:52[OMERO-push] $ /bin/bash -xe /tmp/jenkins10766720302671264897.sh
05:59:52+ python3.11 -mvenv venv
05:59:54+ source /home/omero/workspace/OMERO-push/venv/bin/activate
05:59:54++ deactivate nondestructive
05:59:54++ '[' -n '' ']'
05:59:54++ '[' -n '' ']'
05:59:54++ hash -r
05:59:54++ '[' -n '' ']'
05:59:54++ unset VIRTUAL_ENV
05:59:54++ unset VIRTUAL_ENV_PROMPT
05:59:54++ '[' '!' nondestructive = nondestructive ']'
05:59:54++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
05:59:54++ export VIRTUAL_ENV
05:59:54++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
05:59:54++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
05:59:54++ export PATH
05:59:54++ '[' -n '' ']'
05:59:54++ '[' -z '' ']'
05:59:54++ _OLD_VIRTUAL_PS1=
05:59:54++ PS1='(venv) '
05:59:54++ export PS1
05:59:54++ VIRTUAL_ENV_PROMPT='(venv) '
05:59:54++ export VIRTUAL_ENV_PROMPT
05:59:54++ hash -r
05:59:54+ pip install -U pip
05:59:54Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (25.2)
05:59:54+ pip install -U scc
05:59:55Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
05:59:55Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.6.1)
05:59:55Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.2)
05:59:55Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
05:59:55Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.18.10)
05:59:55Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
05:59:55Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
05:59:55Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
05:59:55Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
05:59:55Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.5.0)
05:59:55Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.32.3)
05:59:55Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.10.1)
05:59:55Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.13.0)
05:59:55Requirement already satisfied: Deprecated in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.2.18)
05:59:55Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (44.0.2)
05:59:55Requirement already satisfied: cffi>=1.12 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (1.17.1)
05:59:55Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=1.12->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.22)
05:59:55Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.1)
05:59:55Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.10)
05:59:55Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2025.1.31)
05:59:55Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib64/python3.11/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.17.2)
05:59:55Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib64/python3.11/site-packages (from ruamel.yaml->scc) (0.2.12)
05:59:55+ test -e src
05:59:55+ cd src
05:59:55++ git config github.user
05:59:55+ user=snoopycrimecop
05:59:55+ scc merge develop --no-ask --reset --shallow -S success-only
05:59:592025-09-04 05:59:59,268 [ scc.merge] INFO Merging Pull Request(s) based on develop
05:59:592025-09-04 05:59:59,268 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
05:59:592025-09-04 05:59:59,268 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
05:59:592025-09-04 05:59:59,268 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
05:59:592025-09-04 05:59:59,268 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
05:59:592025-09-04 05:59:59,268 [ scc.merge] INFO Excluding Pull Request(s) without successful status
06:00:182025-09-04 06:00:18,134 [ scc.merge] INFO Repository: ome/openmicroscopy
06:00:182025-09-04 06:00:18,134 [ scc.merge] INFO Excluded PRs:
06:00:182025-09-04 06:00:18,134 [ scc.merge] INFO - PR 6437 snoopycrimecop 'update dependencies' (status: failure)
06:00:182025-09-04 06:00:18,134 [ scc.merge] INFO - PR 6423 jburel 'Use \d' (status: failure)
06:00:182025-09-04 06:00:18,134 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
06:00:182025-09-04 06:00:18,134 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
06:00:182025-09-04 06:00:18,134 [ scc.merge] INFO Already up to date.
06:00:182025-09-04 06:00:18,134 [ scc.merge] INFO
06:00:182025-09-04 06:00:18,134 [ scc.merge] INFO Merged PRs:
06:00:182025-09-04 06:00:18,134 [ scc.merge] INFO - PR 6309 jburel 'add try block'
06:00:182025-09-04 06:00:18,134 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
06:00:182025-09-04 06:00:18,134 [ scc.merge] INFO - PR 6428 sbesson 'Remove MaxPermSize flag in the build system'
06:00:182025-09-04 06:00:18,134 [ scc.merge] INFO
06:00:18+ cp etc/omero.properties etc/omero.properties.bak
06:00:18+ rm etc/omero.properties
06:00:18+ touch etc/omero.properties
06:00:18++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
06:00:18+ ne=249
06:00:18++ sed -n 1,249p etc/omero.properties.bak
06:00:18+ line='##
06:00:18## omero.properties
06:00:18## ----------------
06:00:18##
06:00:18## DO NOT EDIT!
06:00:18##
06:00:18##
06:00:18## Any of these properties can be altered by using `omero config`. MODIFYING
06:00:18## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
06:00:18## at compile time!
06:00:18##
06:00:18## For an overview of these properties, see
06:00:18## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html06:00:18##
06:00:18## Properties marked with "DEVELOPMENT" should not be used in production.
06:00:1806:00:18# Comma separated list of Ice transports available to clients. The default
06:00:18# value ("ssl,tcp") instructs Ice to open the ports specified by the
06:00:18# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
06:00:18# will prevent all non-encrypted connections to the OMERO server.
06:00:18#
06:00:18# Additionally, there are two experimental values for using websockets:
06:00:18# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
06:00:18# that are opened are controlled by the omero.ports.ws and omero.ports.wss
06:00:18# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
06:00:18#
06:00:18# Note: When using websockets behind a web server like nginx, additional
06:00:18# configuration may be needed.
06:00:18omero.client.icetransports=ssl,tcp
06:00:1806:00:18# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
06:00:18# server
06:00:18omero.ports.prefix=
06:00:1806:00:18# The Glacier2 SSL port number to use
06:00:18omero.ports.ssl=4064
06:00:1806:00:18# The Glacier2 TCP port number to use (unencrypted)
06:00:18omero.ports.tcp=4063
06:00:1806:00:18# The Glacier2 WSS port number to use
06:00:18omero.ports.wss=4066
06:00:1806:00:18# The Glacier2 WS port number to use (unencrypted)
06:00:18omero.ports.ws=4065
06:00:1806:00:18# The IceGrid registry port number to use
06:00:18omero.ports.registry=4061
06:00:1806:00:18#############################################
06:00:18## JVM configuration
06:00:18##
06:00:18## Note: changes to the omero.jvmcfg properties
06:00:18## will *not* be reflected in OMERO.server
06:00:18## since they are defined in OMERO.py.
06:00:18#############################################
06:00:18## (For documentation only)
06:00:18# Memory strategy which will be used by default.
06:00:18# Options include: percent, manual
06:00:18omero.jvmcfg.strategy=percent
06:00:1806:00:18## (For documentation only)
06:00:18# Explicit value for the `-Xmx` argument, e.g.
06:00:18# "1g"
06:00:18omero.jvmcfg.heap_size=
06:00:1806:00:18## (For documentation only)
06:00:18# Explicit value for the MaxPermSize argument
06:00:18# to the JVM, e.g. "500M". Ignored for Java8+
06:00:18omero.jvmcfg.perm_gen=
06:00:1806:00:18## (For documentation only)
06:00:18# Toggles on or off heap dumps on OOMs. Default is "off".
06:00:18# The special value "tmp" will create the heap dumps in
06:00:18# your temp directory.
06:00:18omero.jvmcfg.heap_dump=
06:00:1806:00:18## (For documentation only)
06:00:18# Used only by the percent strategy. An integer between 0
06:00:18# and 100 which is the percent of active memory that will
06:00:18# be used by the service.
06:00:18omero.jvmcfg.percent=
06:00:1806:00:18## (For documentation only)
06:00:18# Contains other parameters which should be passed to the
06:00:18# JVM. The value of "append" is treated as if it were on
06:00:18# the command line so will be separated on whitespace.
06:00:18# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
06:00:18# results in two new arguments.
06:00:18# Note that when using `config set` from the command line
06:00:18# one may need to give a prior `--` option to prevent a value
06:00:18# starting with `-` from already being parsed as an option,
06:00:18# and values may need quoting to prevent whitespace or other
06:00:18# significant characters from being interpreted prematurely.
06:00:1806:00:18omero.jvmcfg.append=
06:00:1806:00:18## (For documentation only)
06:00:18# Manual override of the total system memory that
06:00:18# OMERO will *think* is present on the local OS (MB).
06:00:18# If unset, an attempt will be made to detect the actual
06:00:18# amount: first by using the Python library `psutil` and
06:00:18# if that is not installed, by running a Java tool. If
06:00:18# neither works, 4.0GB is assumed.
06:00:18omero.jvmcfg.system_memory=
06:00:1806:00:18## (For documentation only)
06:00:18# Suggestion for strategies as to the minimum memory
06:00:18# that they will use for calculating JVM settings (MB).
06:00:18omero.jvmcfg.min_system_memory=3414
06:00:1806:00:18## (For documentation only)
06:00:18# Suggestion for strategies as to the maximum memory
06:00:18# that they will use for calculating JVM settings (MB).
06:00:18omero.jvmcfg.max_system_memory=48000
06:00:1806:00:1806:00:18#############################################
06:00:18## Logging properties
06:00:18##
06:00:18## Note: changes to the default omero.logging values in
06:00:18## this file will *not* be reflected in OMERO.server
06:00:18## since they are defined in OMERO.py
06:00:18#############################################
06:00:1806:00:18## (For documentation only)
06:00:18# Relative server directory where the log files should be stored.
06:00:18omero.logging.directory=var/log/
06:00:1806:00:18## (For documentation only)
06:00:18# Whether the server log files should be rotated at a certain time
06:00:18# interval. If true, log files will be rolled over at midnight.
06:00:18# Otherwise, log files will be rolled over at a predetermined size,
06:00:18# see omero.logging.logsize for more information.
06:00:18omero.logging.timedlog=false
06:00:1806:00:18## (For documentation only)
06:00:18# If omero.logging.timedlog is false or unset, specifies the
06:00:18# maximum size of the server log files in bytes above which a
06:00:18# new log file should be created.
06:00:18omero.logging.logsize=5000000
06:00:1806:00:18## (For documentation only)
06:00:18# If omero.logging.timedlog is false or unset, specifies the
06:00:18# number of old server log files that should be kept. Old log
06:00:18# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
06:00:18omero.logging.lognum=9
06:00:1806:00:18## (For documentation only)
06:00:18# Specifies the threshold for the Python servers log files. Logging messages
06:00:18# which are less severe than this value will be ignored. For a list of
06:00:18# available values, see https://docs.python.org/3/library/logging.html#levels.
06:00:18omero.logging.level=20
06:00:1806:00:18#############################################
06:00:18## Ice overrides
06:00:18##
06:00:18## Though not used directly by OMERO, a number
06:00:18## of properties prefixed with "Ice.*" will
06:00:18## alter the behavior of the OMERO runtime
06:00:18## by configuring the Ice communicators. For a
06:00:18## full listing see:
06:00:18##
06:00:18## http://doc.zeroc.com/display/Ice/Property+Reference06:00:18## For more information see
06:00:18## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start06:00:18#############################################
06:00:1806:00:18# Disable IPv6 by setting to 0. Only needed in
06:00:18# certain situations.
06:00:18Ice.IPv6=1
06:00:1806:00:18# Glacier2Template IceSSL defaults and overrides,
06:00:18# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
06:00:18# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
06:00:18# update the corresponding IceSSL. property.
06:00:18omero.glacier2.IceSSL=
06:00:1806:00:18# Glacier2Template SSL maximum allowed protocol (mac bug)
06:00:18omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
06:00:18# Glacier2Template SSL allowed cipher suites
06:00:18omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
06:00:18# Glacier2Template SSL verification requirements
06:00:18omero.glacier2.IceSSL.VerifyPeer=0
06:00:18# Glacier2Template SSL allowed protocols
06:00:18omero.glacier2.IceSSL.Protocols=tls1
06:00:1806:00:18# Override the default set of OMERO services.
06:00:18# For example, to run OMERO.server with Blitz and Tables only
06:00:18# (i.e. disable Processor, DropBox, Indexer, PixelData)
06:00:18# set this to ``master:Blitz-0,Tables-0``.
06:00:18# Also use this to distribute OMERO services across multiple nodes,
06:00:18# for example:
06:00:18# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
06:00:18# See
06:00:18# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples06:00:18omero.server.nodedescriptors=
06:00:1806:00:18#############################################
06:00:18## Darwin (OS X) specific defaults for templated configuration files only.
06:00:18## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
06:00:18## file.
06:00:18## Do not set these properties in ``omero config``, instead set the original
06:00:18## ``xxx.yyy`` property
06:00:18#############################################
06:00:18_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
06:00:1806:00:18## (For documentation only)
06:00:18# Name of the Python module to use when starting the Tables service
06:00:18omero.tables.module=runTables
06:00:1806:00:18#############################################
06:00:18## Server product name for release artifacts
06:00:18#############################################
06:00:18product.name=OMERO.server
06:00:1806:00:18#############################################
06:00:18### Properties below this marker are ignored by
06:00:18### omero.install.config_parser.PropertyParser
06:00:18### END
06:00:1806:00:18#############################################
06:00:18## Library versions
06:00:18#############################################
06:00:18##
06:00:18versions.findbugs=1.2.1
06:00:18versions.ice36=3.6.5
06:00:18versions.ice36_lib=36
06:00:18## internal
06:00:18versions.omeroshares36=3.6.3
06:00:18versions.omeromock36=3.6.3
06:00:18versions.icedb36=3.6.3
06:00:18versions.ipython=1.2.1
06:00:1806:00:18versions.janino=2.5.10
06:00:1806:00:18versions.reportng=1.1.1
06:00:1806:00:18versions.testng=7.5
06:00:18versions.velocity=1.4
06:00:1806:00:18versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE06:00:18versions.omero-scripts-url=${versions.omero-pypi}
06:00:1806:00:18###
06:00:18### Appended Values
06:00:18###
06:00:1806:00:18## Internal dependencies'
06:00:18+ echo '##
06:00:18## omero.properties
06:00:18## ----------------
06:00:18##
06:00:18## DO NOT EDIT!
06:00:18##
06:00:18##
06:00:18## Any of these properties can be altered by using `omero config`. MODIFYING
06:00:18## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
06:00:18## at compile time!
06:00:18##
06:00:18## For an overview of these properties, see
06:00:18## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html06:00:18##
06:00:18## Properties marked with "DEVELOPMENT" should not be used in production.
06:00:1806:00:18# Comma separated list of Ice transports available to clients. The default
06:00:18# value ("ssl,tcp") instructs Ice to open the ports specified by the
06:00:18# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
06:00:18# will prevent all non-encrypted connections to the OMERO server.
06:00:18#
06:00:18# Additionally, there are two experimental values for using websockets:
06:00:18# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
06:00:18# that are opened are controlled by the omero.ports.ws and omero.ports.wss
06:00:18# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
06:00:18#
06:00:18# Note: When using websockets behind a web server like nginx, additional
06:00:18# configuration may be needed.
06:00:18omero.client.icetransports=ssl,tcp
06:00:1806:00:18# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
06:00:18# server
06:00:18omero.ports.prefix=
06:00:1806:00:18# The Glacier2 SSL port number to use
06:00:18omero.ports.ssl=4064
06:00:1806:00:18# The Glacier2 TCP port number to use (unencrypted)
06:00:18omero.ports.tcp=4063
06:00:1806:00:18# The Glacier2 WSS port number to use
06:00:18omero.ports.wss=4066
06:00:1806:00:18# The Glacier2 WS port number to use (unencrypted)
06:00:18omero.ports.ws=4065
06:00:1806:00:18# The IceGrid registry port number to use
06:00:18omero.ports.registry=4061
06:00:1806:00:18#############################################
06:00:18## JVM configuration
06:00:18##
06:00:18## Note: changes to the omero.jvmcfg properties
06:00:18## will *not* be reflected in OMERO.server
06:00:18## since they are defined in OMERO.py.
06:00:18#############################################
06:00:18## (For documentation only)
06:00:18# Memory strategy which will be used by default.
06:00:18# Options include: percent, manual
06:00:18omero.jvmcfg.strategy=percent
06:00:1806:00:18## (For documentation only)
06:00:18# Explicit value for the `-Xmx` argument, e.g.
06:00:18# "1g"
06:00:18omero.jvmcfg.heap_size=
06:00:1806:00:18## (For documentation only)
06:00:18# Explicit value for the MaxPermSize argument
06:00:18# to the JVM, e.g. "500M". Ignored for Java8+
06:00:18omero.jvmcfg.perm_gen=
06:00:1806:00:18## (For documentation only)
06:00:18# Toggles on or off heap dumps on OOMs. Default is "off".
06:00:18# The special value "tmp" will create the heap dumps in
06:00:18# your temp directory.
06:00:18omero.jvmcfg.heap_dump=
06:00:1806:00:18## (For documentation only)
06:00:18# Used only by the percent strategy. An integer between 0
06:00:18# and 100 which is the percent of active memory that will
06:00:18# be used by the service.
06:00:18omero.jvmcfg.percent=
06:00:1806:00:18## (For documentation only)
06:00:18# Contains other parameters which should be passed to the
06:00:18# JVM. The value of "append" is treated as if it were on
06:00:18# the command line so will be separated on whitespace.
06:00:18# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
06:00:18# results in two new arguments.
06:00:18# Note that when using `config set` from the command line
06:00:18# one may need to give a prior `--` option to prevent a value
06:00:18# starting with `-` from already being parsed as an option,
06:00:18# and values may need quoting to prevent whitespace or other
06:00:18# significant characters from being interpreted prematurely.
06:00:1806:00:18omero.jvmcfg.append=
06:00:1806:00:18## (For documentation only)
06:00:18# Manual override of the total system memory that
06:00:18# OMERO will *think* is present on the local OS (MB).
06:00:18# If unset, an attempt will be made to detect the actual
06:00:18# amount: first by using the Python library `psutil` and
06:00:18# if that is not installed, by running a Java tool. If
06:00:18# neither works, 4.0GB is assumed.
06:00:18omero.jvmcfg.system_memory=
06:00:1806:00:18## (For documentation only)
06:00:18# Suggestion for strategies as to the minimum memory
06:00:18# that they will use for calculating JVM settings (MB).
06:00:18omero.jvmcfg.min_system_memory=3414
06:00:1806:00:18## (For documentation only)
06:00:18# Suggestion for strategies as to the maximum memory
06:00:18# that they will use for calculating JVM settings (MB).
06:00:18omero.jvmcfg.max_system_memory=48000
06:00:1806:00:1806:00:18#############################################
06:00:18## Logging properties
06:00:18##
06:00:18## Note: changes to the default omero.logging values in
06:00:18## this file will *not* be reflected in OMERO.server
06:00:18## since they are defined in OMERO.py
06:00:18#############################################
06:00:1806:00:18## (For documentation only)
06:00:18# Relative server directory where the log files should be stored.
06:00:18omero.logging.directory=var/log/
06:00:1806:00:18## (For documentation only)
06:00:18# Whether the server log files should be rotated at a certain time
06:00:18# interval. If true, log files will be rolled over at midnight.
06:00:18# Otherwise, log files will be rolled over at a predetermined size,
06:00:18# see omero.logging.logsize for more information.
06:00:18omero.logging.timedlog=false
06:00:1806:00:18## (For documentation only)
06:00:18# If omero.logging.timedlog is false or unset, specifies the
06:00:18# maximum size of the server log files in bytes above which a
06:00:18# new log file should be created.
06:00:18omero.logging.logsize=5000000
06:00:1806:00:18## (For documentation only)
06:00:18# If omero.logging.timedlog is false or unset, specifies the
06:00:18# number of old server log files that should be kept. Old log
06:00:18# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
06:00:18omero.logging.lognum=9
06:00:1806:00:18## (For documentation only)
06:00:18# Specifies the threshold for the Python servers log files. Logging messages
06:00:18# which are less severe than this value will be ignored. For a list of
06:00:18# available values, see https://docs.python.org/3/library/logging.html#levels.
06:00:18omero.logging.level=20
06:00:1806:00:18#############################################
06:00:18## Ice overrides
06:00:18##
06:00:18## Though not used directly by OMERO, a number
06:00:18## of properties prefixed with "Ice.*" will
06:00:18## alter the behavior of the OMERO runtime
06:00:18## by configuring the Ice communicators. For a
06:00:18## full listing see:
06:00:18##
06:00:18## http://doc.zeroc.com/display/Ice/Property+Reference06:00:18## For more information see
06:00:18## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start06:00:18#############################################
06:00:1806:00:18# Disable IPv6 by setting to 0. Only needed in
06:00:18# certain situations.
06:00:18Ice.IPv6=1
06:00:1806:00:18# Glacier2Template IceSSL defaults and overrides,
06:00:18# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
06:00:18# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
06:00:18# update the corresponding IceSSL. property.
06:00:18omero.glacier2.IceSSL=
06:00:1806:00:18# Glacier2Template SSL maximum allowed protocol (mac bug)
06:00:18omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
06:00:18# Glacier2Template SSL allowed cipher suites
06:00:18omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
06:00:18# Glacier2Template SSL verification requirements
06:00:18omero.glacier2.IceSSL.VerifyPeer=0
06:00:18# Glacier2Template SSL allowed protocols
06:00:18omero.glacier2.IceSSL.Protocols=tls1
06:00:1806:00:18# Override the default set of OMERO services.
06:00:18# For example, to run OMERO.server with Blitz and Tables only
06:00:18# (i.e. disable Processor, DropBox, Indexer, PixelData)
06:00:18# set this to ``master:Blitz-0,Tables-0``.
06:00:18# Also use this to distribute OMERO services across multiple nodes,
06:00:18# for example:
06:00:18# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
06:00:18# See
06:00:18# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples06:00:18omero.server.nodedescriptors=
06:00:1806:00:18#############################################
06:00:18## Darwin (OS X) specific defaults for templated configuration files only.
06:00:18## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
06:00:18## file.
06:00:18## Do not set these properties in ``omero config``, instead set the original
06:00:18## ``xxx.yyy`` property
06:00:18#############################################
06:00:18_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
06:00:1806:00:18## (For documentation only)
06:00:18# Name of the Python module to use when starting the Tables service
06:00:18omero.tables.module=runTables
06:00:1806:00:18#############################################
06:00:18## Server product name for release artifacts
06:00:18#############################################
06:00:18product.name=OMERO.server
06:00:1806:00:18#############################################
06:00:18### Properties below this marker are ignored by
06:00:18### omero.install.config_parser.PropertyParser
06:00:18### END
06:00:1806:00:18#############################################
06:00:18## Library versions
06:00:18#############################################
06:00:18##
06:00:18versions.findbugs=1.2.1
06:00:18versions.ice36=3.6.5
06:00:18versions.ice36_lib=36
06:00:18## internal
06:00:18versions.omeroshares36=3.6.3
06:00:18versions.omeromock36=3.6.3
06:00:18versions.icedb36=3.6.3
06:00:18versions.ipython=1.2.1
06:00:1806:00:18versions.janino=2.5.10
06:00:1806:00:18versions.reportng=1.1.1
06:00:1806:00:18versions.testng=7.5
06:00:18versions.velocity=1.4
06:00:1806:00:18versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE06:00:18versions.omero-scripts-url=${versions.omero-pypi}
06:00:1806:00:18###
06:00:18### Appended Values
06:00:18###
06:00:1806:00:18## Internal dependencies'
06:00:18+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/06:00:18+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive06:00:18+ echo versions.scripts-prefix=
06:00:18+ echo versions.scripts=merge_ci
06:00:18+ cat /home/omero/workspace/OMERO-push/version.properties
06:00:18+ git commit -a -m 'Add version.properties to etc/omero.properties'
06:00:18[detached HEAD e93a5db71f] Add version.properties to etc/omero.properties
06:00:18 1 file changed, 46 insertions(+), 7 deletions(-)
06:00:18+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
06:00:19To github.com:snoopycrimecop/openmicroscopy.git
06:00:19 + 755981ab8b...e93a5db71f HEAD -> merge_ci (forced update)
06:00:19Finished: SUCCESS
![[Jenkins]](/jenkins/static/eb00aee0/images/svgs/logo.svg){kind=logo}
