00:33:38 Started by upstream project "Trigger" build number 562
00:33:38 originally caused by:
00:33:38 Started by timer
00:33:38 Running as SYSTEM
00:33:38 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:33:38 [OMERO-server] $ /bin/bash -xe /tmp/jenkins12553808163419520588.sh
00:33:38 + source /home/settings.env
00:33:38 ++ OMERO_DB_HOST=pg
00:33:38 ++ OMERO_DB_USER=postgres
00:33:38 ++ OMERO_DB_PASS=
00:33:38 ++ OMERO_ROOT_PASS=omero
00:33:38 ++ OMERO_DATA_DIR=/OMERO
00:33:38 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:33:38 + OMERO_DB_NAME=OMERO-server
00:33:38 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:33:38 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:33:38 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:33:38 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:33:38 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:33:38 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:33:38 ++ deactivate nondestructive
00:33:38 ++ '[' -n '' ']'
00:33:38 ++ '[' -n '' ']'
00:33:38 ++ hash -r
00:33:38 ++ '[' -n '' ']'
00:33:38 ++ unset VIRTUAL_ENV
00:33:38 ++ unset VIRTUAL_ENV_PROMPT
00:33:38 ++ '[' '!' nondestructive = nondestructive ']'
00:33:38 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:33:38 ++ export VIRTUAL_ENV
00:33:38 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:33:38 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:33:38 ++ export PATH
00:33:38 ++ '[' -n '' ']'
00:33:38 ++ '[' -z '' ']'
00:33:38 ++ _OLD_VIRTUAL_PS1=
00:33:38 ++ PS1='(.venv3) '
00:33:38 ++ export PS1
00:33:38 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:33:38 ++ export VIRTUAL_ENV_PROMPT
00:33:38 ++ hash -r
00:33:38 + omero admin stop
00:33:39 Waiting on shutdown. Use CTRL-C to exit
00:33:39 .+ sleep 5
00:33:54 + deactivate
00:33:54 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:33:54 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:33:54 + export PATH
00:33:54 + unset _OLD_VIRTUAL_PATH
00:33:54 + '[' -n '' ']'
00:33:54 + hash -r
00:33:54 + '[' -n '' ']'
00:33:54 + unset VIRTUAL_ENV
00:33:54 + unset VIRTUAL_ENV_PROMPT
00:33:54 + '[' '!' '' = nondestructive ']'
00:33:54 + unset -f deactivate
00:33:54 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:33:55 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:33:59 + '[' false = true ']'
00:33:59 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:33:59 Skipping PURGE_DATA:CleanDbAndRepo
00:33:59 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.21.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT-with-dependencies.jar /home/omero/workspace/OMERO-server/version.properties
00:34:01 Copied 1 artifact from "OMERO-build" build number 475
00:34:01 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 468
00:34:01 Copied 2 artifacts from "OMERO-build-build" build number 498
00:34:02 Copied 2 artifacts from "OMERO-zarr-pixel-buffer-build" build number 8
00:34:02 [OMERO-server] $ /bin/bash -xe /tmp/jenkins16080300727421323269.sh
00:34:02 + source /home/settings.env
00:34:02 ++ OMERO_DB_HOST=pg
00:34:02 ++ OMERO_DB_USER=postgres
00:34:02 ++ OMERO_DB_PASS=
00:34:02 ++ OMERO_ROOT_PASS=omero
00:34:02 ++ OMERO_DATA_DIR=/OMERO
00:34:02 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:34:02 + OMERO_DB_NAME=OMERO-server
00:34:02 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:34:02 + mkdir -p /home/omero/omero-server-data
00:34:02 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:34:02 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:34:02 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:34:02 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:34:02 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:34:02 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:34:02 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:34:02 ++ ls OMERO.server-5.6.3-569-7a130069e4-ice36-b475.zip
00:34:02 + ZIP=OMERO.server-5.6.3-569-7a130069e4-ice36-b475.zip
00:34:02 + '[' '!' -z '' ']'
00:34:02 + DIST=OMERO.server-5.6.3-569-7a130069e4-ice36-b475
00:34:02 + unzip OMERO.server-5.6.3-569-7a130069e4-ice36-b475.zip
00:34:02 Archive: OMERO.server-5.6.3-569-7a130069e4-ice36-b475.zip
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/blitz/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/grid/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/profiles/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/templates/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/templates/error/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/templates/grid/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/janelia/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/matplotlib/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ncsa_paledit/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/seaborn/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/wcif/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/analysis_scripts/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/annotation_scripts/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/export_scripts/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/figure_scripts/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/import_scripts/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/util_scripts/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/misc/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__1/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__10/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__11/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__2/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__3/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__4/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__5/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__6/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__7/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__8/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__9/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3__4/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3__5/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3__6/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3__7/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO4.1__0/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO4.2__0/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO4.2__0/t/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO4.3__0/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO4.4__0/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO4__0/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.0__0/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.1__1/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.2__0/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.3__0/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4DEV__1/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4DEV__2/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4DEV__3/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4__0/
00:34:02 creating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/var/
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/LICENSE.txt
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/backup.cfg
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/blitz/mail-senders.example
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/blitz/mail-server.example
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/build.properties
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/env.bat
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/env.sh
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/hibernate.properties
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/ice.config
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/logback-cli.xml
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/logback-indexing-cli.xml
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/logback-indexing.xml
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/logback.xml
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/mime.types
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/node1.cfg
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/node2.cfg
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/omero.properties
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/profiles/psql
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/rollover.cfg
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/templates/Windows.cfg
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/templates/error/maintainance.html
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/templates/grid/README
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/templates/grid/default.xml
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/templates/grid/templates.xml
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/templates/grid/windefault.xml
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/templates/ice.config
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/templates/internal.cfg
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/templates/master.cfg
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/templates/robot.template
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/etc/testdropbox.config
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/history.rst
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/OMEZarrReader.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/accessors-smart.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/activation.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/aggdesigner-algorithm.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/aircompressor.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/antlr.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/aopalliance.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/apiguardian-api.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/asm.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/avatica-core.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/avatica-metrics.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/aws-java-sdk-core.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/aws-java-sdk-kms.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/aws-java-sdk-s3.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/base.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-anim.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-awt-util.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-bridge.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-codec.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-constants.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-css.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-dom.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-ext.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-gvt.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-i18n.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-parser.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-script.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-shared-resources.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-svg-dom.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-svggen.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-transcoder.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-util.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/batik-xml.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/btm.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/calcite-core.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/calcite-linq4j.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/cdm-core.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/checker-qual.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/commons-beanutils.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/commons-codec.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/commons-collections.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/commons-collections4.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/commons-compiler.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/commons-dbcp2.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/commons-io.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/commons-lang.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/commons-lang3.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/commons-logging.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/commons-math.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/commons-math3.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/commons-pool2.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/dom4j.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/ehcache.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/error_prone_annotations.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/failureaccess.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/filters.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/fontbox.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/formats-api.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/formats-bsd.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/formats-gpl.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/glacier2.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/google-http-client-xml.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/google-http-client.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/guava.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/hamcrest-core.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/hibernate-commons-annotations.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/hibernate-core.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/hibernate-jpa-2.0-api.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/hibernate-search-analyzers.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/hibernate-search.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/httpclient.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/httpclient5.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/httpcore.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/httpcore5-h2.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/httpcore5.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/httpmime.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/httpservices.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/ice.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/icegrid.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/icestorm.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/ini4j.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/j2objc-annotations.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/jackson-annotations.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/jackson-core.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/jackson-databind.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/jackson-dataformat-cbor.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/jackson-dataformat-yaml.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/janino.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/java-getopt.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/java-image-scaling.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/javassist.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/javax.activation.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/javax.mail.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/jblosc.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/jgoodies-common.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/jgoodies-forms.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/jhdf5.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/jmespath-java.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/jna.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/joda-time.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/json-path.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/json-simple.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/json-smart.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/json.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/jta.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/jts-core.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/jts-io-common.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/junit.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/jxrlib-all.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/jzarr.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/kryo.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/listenablefuture.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/logback-classic.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/logback-core.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/lucene-analyzers.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/lucene-core.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/lucene-highlighter.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/lucene-memory.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/lucene-misc.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/lucene-smartcn.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/lucene-spatial.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/lucene-spellchecker.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/lucene-stempel.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/memory.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/metadata-extractor.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/metakit.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/metrics-core.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/metrics-graphite.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/metrics-jvm.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/metrics-logback.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/minio.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/minlog.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/native-lib-loader.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/objenesis.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/okhttp.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/okio.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/ome-codecs.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/ome-common.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/ome-jai.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/ome-mdbtools.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/ome-poi.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/ome-xml.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/omero-blitz.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/omero-common.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/omero-gateway.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/omero-model.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/omero-renderer.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/omero-romio.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/omero-server.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/pdfbox.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/perf4j.jar
00:34:02 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/postgresql.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/proj4j.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/protobuf-java.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/quartz.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/re2j.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/reflectasm.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/serializer.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/sketches-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/slf4j-api.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/snakeyaml.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/solr-analysis-extras.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/solr-commons-csv.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/solr-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/solr-solrj.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/specification.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/spring-aop.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/spring-beans.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/spring-context-support.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/spring-context.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/spring-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/spring-expression.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/spring-jdbc.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/spring-jms.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/spring-ldap-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/spring-messaging.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/spring-orm.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/spring-security-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/spring-security-ldap.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/spring-tx.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/sqlite-jdbc.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/subethasmtp.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/turbojpeg.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/uzaygezen-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/xalan.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/xercesImpl.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/xml-apis-ext.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/xml-apis.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/xmlgraphics-commons.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/xmpcore.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/client/xpp3.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/README.rst
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/3-3-2_rgb.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/cividis.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/fire.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/glasbey.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/glasbey_inverted.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/glow.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/grays.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ice.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/janelia/pup_br.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/janelia/pup_nr.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/matplotlib/inferno.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/matplotlib/magma.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/matplotlib/plasma.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/matplotlib/viridis.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ncsa_paledit/16_colors.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ncsa_paledit/5_ramps.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ncsa_paledit/6_shades.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ncsa_paledit/blue_orange_icb.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ncsa_paledit/brgbcmyw.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ncsa_paledit/cool.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ncsa_paledit/edges.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ncsa_paledit/gem.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ncsa_paledit/phase.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ncsa_paledit/royal.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ncsa_paledit/sepia.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ncsa_paledit/smart.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ncsa_paledit/thal.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ncsa_paledit/thallium.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/ncsa_paledit/unionjack.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/physics.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/red-green.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/seaborn/mako.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/seaborn/rocket.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/spectrum.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/thermal.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/turbo.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/wcif/cyan_hot.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/wcif/green_fire_blue.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/wcif/hilo.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/wcif/ica.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/wcif/ica2.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/wcif/ica3.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/wcif/magenta_hot.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/wcif/orange_hot.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/wcif/rainbow_rgb.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/wcif/red_hot.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/luts/wcif/yellow_hot.lut
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/analysis_scripts/Kymograph.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/analysis_scripts/Kymograph_Analysis.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/analysis_scripts/Plot_Profile.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/analysis_scripts/__init__.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/annotation_scripts/Convert_KeyVal_namespace.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/annotation_scripts/Export_to_csv.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/annotation_scripts/Import_from_csv.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/annotation_scripts/Remove_KeyVal.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/annotation_scripts/__init__.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/export_scripts/Batch_Image_Export.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/export_scripts/Batch_ROI_Export.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/export_scripts/Make_Movie.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/export_scripts/__init__.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/figure_scripts/Movie_Figure.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/figure_scripts/Movie_ROI_Figure.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/figure_scripts/ROI_Split_Figure.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/figure_scripts/Split_View_Figure.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/figure_scripts/Thumbnail_Figure.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/figure_scripts/__init__.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/import_scripts/Populate_Metadata.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/import_scripts/Populate_ROI.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/import_scripts/__init__.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/util_scripts/Channel_Offsets.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/util_scripts/Combine_Images.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/util_scripts/Dataset_To_Plate.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/util_scripts/Images_From_ROIs.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/util_scripts/Move_Annotations.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/scripts/omero/util_scripts/__init__.py
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/OMEZarrReader.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/accessors-smart.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/activation.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/aggdesigner-algorithm.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/aircompressor.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/antlr.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/aopalliance.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/apiguardian-api.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/asm.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/avatica-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/avatica-metrics.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/aws-java-sdk-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/aws-java-sdk-kms.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/aws-java-sdk-s3.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/base.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-anim.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-awt-util.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-bridge.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-codec.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-constants.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-css.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-dom.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-ext.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-gvt.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-i18n.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-parser.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-script.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-shared-resources.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-svg-dom.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-svggen.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-transcoder.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-util.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/batik-xml.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/btm.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/calcite-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/calcite-linq4j.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/cdm-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/checker-qual.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/commons-beanutils.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/commons-codec.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/commons-collections.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/commons-collections4.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/commons-compiler.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/commons-dbcp2.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/commons-io.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/commons-lang.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/commons-lang3.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/commons-logging.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/commons-math.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/commons-math3.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/commons-pool2.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/dom4j.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/ehcache.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/error_prone_annotations.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/failureaccess.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/filters.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/fontbox.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/formats-api.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/formats-bsd.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/formats-gpl.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/glacier2.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/google-http-client-xml.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/google-http-client.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/guava.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/hamcrest-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/hibernate-commons-annotations.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/hibernate-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/hibernate-jpa-2.0-api.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/hibernate-search-analyzers.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/hibernate-search.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/httpclient.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/httpclient5.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/httpcore.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/httpcore5-h2.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/httpcore5.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/httpmime.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/httpservices.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/ice.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/icegrid.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/icestorm.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/ini4j.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/j2objc-annotations.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/jackson-annotations.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/jackson-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/jackson-databind.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/jackson-dataformat-cbor.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/jackson-dataformat-yaml.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/janino.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/java-getopt.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/java-image-scaling.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/javassist.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/javax.activation.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/javax.mail.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/jblosc.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/jgoodies-common.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/jgoodies-forms.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/jhdf5.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/jmespath-java.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/jna.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/joda-time.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/json-path.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/json-simple.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/json-smart.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/json.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/jta.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/jts-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/jts-io-common.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/junit.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/jxrlib-all.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/jzarr.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/kryo.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/listenablefuture.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/logback-classic.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/logback-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/lucene-analyzers.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/lucene-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/lucene-highlighter.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/lucene-memory.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/lucene-misc.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/lucene-smartcn.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/lucene-spatial.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/lucene-spellchecker.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/lucene-stempel.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/memory.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/metadata-extractor.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/metakit.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/metrics-core.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/metrics-graphite.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/metrics-jvm.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/metrics-logback.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/minio.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/minlog.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/native-lib-loader.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/objenesis.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/okhttp.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/okio.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/ome-codecs.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/ome-common.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/ome-jai.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/ome-mdbtools.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/ome-poi.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/ome-xml.jar
00:34:03 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/omero-blitz.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/omero-common.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/omero-gateway.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/omero-model.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/omero-renderer.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/omero-romio.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/omero-server.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/pdfbox.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/perf4j.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/postgresql.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/proj4j.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/protobuf-java.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/quartz.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/re2j.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/reflectasm.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/serializer.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/sketches-core.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/slf4j-api.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/snakeyaml.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/solr-analysis-extras.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/solr-commons-csv.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/solr-core.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/solr-solrj.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/specification.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/spring-aop.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/spring-beans.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/spring-context-support.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/spring-context.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/spring-core.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/spring-expression.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/spring-jdbc.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/spring-jms.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/spring-ldap-core.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/spring-messaging.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/spring-orm.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/spring-security-core.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/spring-security-ldap.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/spring-tx.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/sqlite-jdbc.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/subethasmtp.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/turbojpeg.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/uzaygezen-core.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/xalan.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/xercesImpl.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/xml-apis-ext.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/xml-apis.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/xmlgraphics-commons.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/xmpcore.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/lib/server/xpp3.jar
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/README
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/agpl.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/antlr.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/apache-v1.1.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/apache-v2.0.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/asm.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/bouncy_castle_license.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/bsd.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/cddl-v1.0.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/cpl-v10.html
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/crystalclear.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/django.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/dom4j.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/epl-v1.0.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/fbsd.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/freemarker.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/gpl-v2.0.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/gpl.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/gtest.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/iconsweets_license.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/jamon.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/jmock.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/jquery.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/jtidy.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/lgpl-3.0.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/lgpl-v2.0.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/lgpl-v2.1.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/lgpl-v3.0.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/lgpl.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/matplotlib.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/mit.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/mpl-v1_0.htm
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/npl-1_1.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/path.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/pil.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/postgresql.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/psf-v2.0.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/psf-v2.5.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/scons.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/slf4j.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/tablelayout.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/which.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/zlib-libpng.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/share/licenses/zpl-v2.1.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/README.txt
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/misc/Makefile
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/misc/current.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/misc/enums.py
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__1/OMERO3__7.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__10/OMERO3A__9.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__11/OMERO3A__10.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__11/OMERO3A__5.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__2/OMERO3A__1.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__3/OMERO3A__2.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__3/OMERO3__5.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__4/OMERO3A__3.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__4/OMERO3__5.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__5/OMERO3A__4.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__6/OMERO3A__5.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__7/OMERO3A__6.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__8/OMERO3A__6.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3A__9/OMERO3A__8.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3__4/OMERO3__1.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3__5/OMERO3__4.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3__6/OMERO3__5.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO3__7/OMERO3__6.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO4.1__0/OMERO4__0.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO4__0/OMERO3A__11.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4__0/psql-footer.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4__0/psql-header.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4__0/schema.sql
00:34:04 inflating: OMERO.server-5.6.3-569-7a130069e4-ice36-b475/sql/psql/OMERO5.4__0/views.sql
00:34:04 + rm -f OMERO.server-5.6.3-569-7a130069e4-ice36-b475.zip
00:34:04 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-569-7a130069e4-ice36-b475 /home/omero/workspace/OMERO-server/OMERO.server
00:34:04 ++ ls omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar omero-zarr-pixel-buffer-0.5.1-SNAPSHOT-with-dependencies.jar
00:34:04 + JAR='omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar
00:34:04 omero-zarr-pixel-buffer-0.5.1-SNAPSHOT-with-dependencies.jar'
00:34:04 ++ basename omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar omero-zarr-pixel-buffer-0.5.1-SNAPSHOT-with-dependencies.jar
00:34:04 + JAR_NAME=omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar
00:34:04 + mv /home/omero/workspace/OMERO-server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar
00:34:04 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:34:04 --2025-07-22 00:34:04-- https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:34:04 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
00:34:04 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
00:34:04 HTTP request sent, awaiting response... 200 OK
00:34:04 Length: 889211 (868K) [application/java-archive]
00:34:04 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:34:04
00:34:04 0K .......... .......... .......... .......... .......... 5% 4.08M 0s
00:34:04 50K .......... .......... .......... .......... .......... 11% 9.76M 0s
00:34:04 100K .......... .......... .......... .......... .......... 17% 7.79M 0s
00:34:04 150K .......... .......... .......... .......... .......... 23% 14.0M 0s
00:34:04 200K .......... .......... .......... .......... .......... 28% 53.0M 0s
00:34:04 250K .......... .......... .......... .......... .......... 34% 8.88M 0s
00:34:04 300K .......... .......... .......... .......... .......... 40% 24.3M 0s
00:34:04 350K .......... .......... .......... .......... .......... 46% 26.0M 0s
00:34:04 400K .......... .......... .......... .......... .......... 51% 94.6M 0s
00:34:04 450K .......... .......... .......... .......... .......... 57% 9.74M 0s
00:34:04 500K .......... .......... .......... .......... .......... 63% 32.0M 0s
00:34:04 550K .......... .......... .......... .......... .......... 69% 25.5M 0s
00:34:04 600K .......... .......... .......... .......... .......... 74% 143M 0s
00:34:04 650K .......... .......... .......... .......... .......... 80% 23.6M 0s
00:34:04 700K .......... .......... .......... .......... .......... 86% 9.55M 0s
00:34:04 750K .......... .......... .......... .......... .......... 92% 26.1M 0s
00:34:04 800K .......... .......... .......... .......... .......... 97% 35.1M 0s
00:34:04 850K .......... ........ 100% 103M=0.06s
00:34:04
00:34:04 2025-07-22 00:34:04 (14.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:34:04
00:34:04 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
00:34:04 --2025-07-22 00:34:04-- https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
00:34:04 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
00:34:04 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
00:34:04 HTTP request sent, awaiting response... 200 OK
00:34:04 Length: 73309 (72K) [application/java-archive]
00:34:04 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’
00:34:04
00:34:04 0K .......... .......... .......... .......... .......... 69% 3.75M 0s
00:34:04 50K .......... .......... . 100% 21.2M=0.01s
00:34:04
00:34:04 2025-07-22 00:34:04 (4.99 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309]
00:34:04
00:34:04 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
00:34:04 --2025-07-22 00:34:04-- https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
00:34:05 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
00:34:05 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
00:34:05 HTTP request sent, awaiting response... 200 OK
00:34:05 Length: 63303 (62K) [application/java-archive]
00:34:05 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’
00:34:05
00:34:05 0K .......... .......... .......... .......... .......... 80% 4.16M 0s
00:34:05 50K .......... . 100% 11.6M=0.01s
00:34:05
00:34:05 2025-07-22 00:34:05 (4.74 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303]
00:34:05
00:34:05 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
00:34:05 --2025-07-22 00:34:05-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
00:34:05 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
00:34:05 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
00:34:05 HTTP request sent, awaiting response... 200 OK
00:34:05 Length: 1271272 (1.2M) [application/java-archive]
00:34:05 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’
00:34:05
00:34:05 0K .......... .......... .......... .......... .......... 4% 4.22M 0s
00:34:05 50K .......... .......... .......... .......... .......... 8% 5.18M 0s
00:34:05 100K .......... .......... .......... .......... .......... 12% 23.1M 0s
00:34:05 150K .......... .......... .......... .......... .......... 16% 23.5M 0s
00:34:05 200K .......... .......... .......... .......... .......... 20% 7.77M 0s
00:34:05 250K .......... .......... .......... .......... .......... 24% 31.2M 0s
00:34:05 300K .......... .......... .......... .......... .......... 28% 59.1M 0s
00:34:05 350K .......... .......... .......... .......... .......... 32% 30.9M 0s
00:34:05 400K .......... .......... .......... .......... .......... 36% 26.6M 0s
00:34:05 450K .......... .......... .......... .......... .......... 40% 9.36M 0s
00:34:05 500K .......... .......... .......... .......... .......... 44% 33.6M 0s
00:34:05 550K .......... .......... .......... .......... .......... 48% 82.8M 0s
00:34:05 600K .......... .......... .......... .......... .......... 52% 28.6M 0s
00:34:05 650K .......... .......... .......... .......... .......... 56% 23.3M 0s
00:34:05 700K .......... .......... .......... .......... .......... 60% 9.70M 0s
00:34:05 750K .......... .......... .......... .......... .......... 64% 34.7M 0s
00:34:05 800K .......... .......... .......... .......... .......... 68% 33.1M 0s
00:34:05 850K .......... .......... .......... .......... .......... 72% 98.1M 0s
00:34:05 900K .......... .......... .......... .......... .......... 76% 21.0M 0s
00:34:05 950K .......... .......... .......... .......... .......... 80% 9.95M 0s
00:34:05 1000K .......... .......... .......... .......... .......... 84% 36.6M 0s
00:34:05 1050K .......... .......... .......... .......... .......... 88% 136M 0s
00:34:05 1100K .......... .......... .......... .......... .......... 92% 28.6M 0s
00:34:05 1150K .......... .......... .......... .......... .......... 96% 21.4M 0s
00:34:05 1200K .......... .......... .......... .......... . 100% 11.9M=0.07s
00:34:05
00:34:05 2025-07-22 00:34:05 (16.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272]
00:34:05
00:34:05 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:34:05 ++ deactivate nondestructive
00:34:05 ++ '[' -n '' ']'
00:34:05 ++ '[' -n '' ']'
00:34:05 ++ hash -r
00:34:05 ++ '[' -n '' ']'
00:34:05 ++ unset VIRTUAL_ENV
00:34:05 ++ unset VIRTUAL_ENV_PROMPT
00:34:05 ++ '[' '!' nondestructive = nondestructive ']'
00:34:05 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:34:05 ++ export VIRTUAL_ENV
00:34:05 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:34:05 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:34:05 ++ export PATH
00:34:05 ++ '[' -n '' ']'
00:34:05 ++ '[' -z '' ']'
00:34:05 ++ _OLD_VIRTUAL_PS1=
00:34:05 ++ PS1='(.venv3) '
00:34:05 ++ export PS1
00:34:05 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:34:05 ++ export VIRTUAL_ENV_PROMPT
00:34:05 ++ hash -r
00:34:05 + pip install -U pip
00:34:05 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:34:05 Collecting pip
00:34:05 Using cached pip-25.1.1-py3-none-any.whl (1.8 MB)
00:34:05 Installing collected packages: pip
00:34:05 Attempting uninstall: pip
00:34:05 Found existing installation: pip 22.3.1
00:34:06 Uninstalling pip-22.3.1:
00:34:06 Successfully uninstalled pip-22.3.1
00:34:07 Successfully installed pip-25.1.1
00:34:07 WARNING: There was an error checking the latest version of pip.
00:34:07 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:34:07 Collecting zeroc-ice==3.6.5
00:34:07 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:34:09 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 20.2 MB/s eta 0:00:00
00:34:09 Installing collected packages: zeroc-ice
00:34:10 Successfully installed zeroc-ice-3.6.5
00:34:10 + pip install markdown
00:34:10 Collecting markdown
00:34:10 Using cached markdown-3.8.2-py3-none-any.whl.metadata (5.1 kB)
00:34:10 Using cached markdown-3.8.2-py3-none-any.whl (106 kB)
00:34:10 Installing collected packages: markdown
00:34:11 Successfully installed markdown-3.8.2
00:34:11 + pip install reportlab
00:34:11 Collecting reportlab
00:34:11 Using cached reportlab-4.4.2-py3-none-any.whl.metadata (1.8 kB)
00:34:11 Collecting pillow>=9.0.0 (from reportlab)
00:34:11 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:34:11 Collecting charset-normalizer (from reportlab)
00:34:11 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
00:34:11 Using cached reportlab-4.4.2-py3-none-any.whl (2.0 MB)
00:34:11 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
00:34:11 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
00:34:11 Installing collected packages: pillow, charset-normalizer, reportlab
00:34:12
00:34:12 Successfully installed charset-normalizer-3.4.2 pillow-11.3.0 reportlab-4.4.2
00:34:12 + pip install pyarrow
00:34:13 Collecting pyarrow
00:34:13 Using cached pyarrow-21.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.3 kB)
00:34:13 Using cached pyarrow-21.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (42.8 MB)
00:34:13 Installing collected packages: pyarrow
00:34:14 Successfully installed pyarrow-21.0.0
00:34:15 + pip install omego
00:34:15 Collecting omego
00:34:15 Using cached omego-0.7.0-py3-none-any.whl
00:34:15 Collecting future (from omego)
00:34:15 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:34:15 Collecting yaclifw>=0.1.1 (from omego)
00:34:15 Using cached yaclifw-0.2.0-py3-none-any.whl
00:34:15 Collecting six (from yaclifw>=0.1.1->omego)
00:34:15 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:34:15 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:34:15 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:34:15 Installing collected packages: six, future, yaclifw, omego
00:34:16
00:34:16 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:34:16 + pip install tables
00:34:16 Collecting tables
00:34:16 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:34:16 Collecting numpy>=1.20.0 (from tables)
00:34:16 Using cached numpy-2.3.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (62 kB)
00:34:16 Collecting numexpr>=2.6.2 (from tables)
00:34:16 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:34:16 Collecting packaging (from tables)
00:34:16 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
00:34:16 Collecting py-cpuinfo (from tables)
00:34:16 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:34:16 Collecting blosc2>=2.3.0 (from tables)
00:34:16 Using cached blosc2-3.6.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.0 kB)
00:34:16 Collecting typing-extensions>=4.4.0 (from tables)
00:34:16 Using cached typing_extensions-4.14.1-py3-none-any.whl.metadata (3.0 kB)
00:34:17 Collecting ndindex (from blosc2>=2.3.0->tables)
00:34:17 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.6 kB)
00:34:17 Collecting msgpack (from blosc2>=2.3.0->tables)
00:34:17 Using cached msgpack-1.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
00:34:17 Collecting platformdirs (from blosc2>=2.3.0->tables)
00:34:17 Using cached platformdirs-4.3.8-py3-none-any.whl.metadata (12 kB)
00:34:17 Collecting requests (from blosc2>=2.3.0->tables)
00:34:17 Using cached requests-2.32.4-py3-none-any.whl.metadata (4.9 kB)
00:34:17 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.2)
00:34:17 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:34:17 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
00:34:17 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:34:17 Using cached urllib3-2.5.0-py3-none-any.whl.metadata (6.5 kB)
00:34:17 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:34:17 Using cached certifi-2025.7.14-py3-none-any.whl.metadata (2.4 kB)
00:34:17 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:34:17 Using cached blosc2-3.6.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.4 MB)
00:34:17 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (401 kB)
00:34:17 Using cached numpy-2.3.1-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB)
00:34:17 Using cached typing_extensions-4.14.1-py3-none-any.whl (43 kB)
00:34:17 Using cached msgpack-1.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (429 kB)
00:34:17 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (528 kB)
00:34:17 Using cached packaging-25.0-py3-none-any.whl (66 kB)
00:34:17 Using cached platformdirs-4.3.8-py3-none-any.whl (18 kB)
00:34:17 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:34:17 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
00:34:17 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:34:17 Using cached urllib3-2.5.0-py3-none-any.whl (129 kB)
00:34:17 Using cached certifi-2025.7.14-py3-none-any.whl (162 kB)
00:34:17 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:34:22
00:34:22 Successfully installed blosc2-3.6.1 certifi-2025.7.14 idna-3.10 msgpack-1.1.1 ndindex-1.10.0 numexpr-2.11.0 numpy-2.3.1 packaging-25.0 platformdirs-4.3.8 py-cpuinfo-9.0.0 requests-2.32.4 tables-3.10.2 typing-extensions-4.14.1 urllib3-2.5.0
00:34:22 + pip install jinja2
00:34:22 Collecting jinja2
00:34:22 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:34:22 Collecting MarkupSafe>=2.0 (from jinja2)
00:34:22 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
00:34:22 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:34:22 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB)
00:34:23 Installing collected packages: MarkupSafe, jinja2
00:34:23
00:34:23 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6
00:34:23 + pip install ome-zarr
00:34:23 Collecting ome-zarr
00:34:23 Using cached ome_zarr-0.11.1-py3-none-any.whl.metadata (2.9 kB)
00:34:23 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr) (2.3.1)
00:34:23 Collecting dask (from ome-zarr)
00:34:23 Using cached dask-2025.7.0-py3-none-any.whl.metadata (3.8 kB)
00:34:23 Collecting zarr<3,>=2.8.1 (from ome-zarr)
00:34:23 Using cached zarr-2.18.7-py3-none-any.whl.metadata (5.8 kB)
00:34:23 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr)
00:34:23 Using cached fsspec-2025.7.0-py3-none-any.whl.metadata (12 kB)
00:34:24 Collecting aiohttp<4 (from ome-zarr)
00:34:24 Using cached aiohttp-3.12.14-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.6 kB)
00:34:24 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr) (2.32.4)
00:34:24 Collecting scikit-image (from ome-zarr)
00:34:24 Using cached scikit_image-0.25.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (14 kB)
00:34:24 Collecting toolz (from ome-zarr)
00:34:24 Using cached toolz-1.0.0-py3-none-any.whl.metadata (5.1 kB)
00:34:24 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp<4->ome-zarr)
00:34:24 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:34:24 Collecting aiosignal>=1.4.0 (from aiohttp<4->ome-zarr)
00:34:24 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:34:24 Collecting attrs>=17.3.0 (from aiohttp<4->ome-zarr)
00:34:24 Using cached attrs-25.3.0-py3-none-any.whl.metadata (10 kB)
00:34:24 Collecting frozenlist>=1.1.1 (from aiohttp<4->ome-zarr)
00:34:24 Using cached frozenlist-1.7.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (18 kB)
00:34:25 Collecting multidict<7.0,>=4.5 (from aiohttp<4->ome-zarr)
00:34:25 Using cached multidict-6.6.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:34:25 Collecting propcache>=0.2.0 (from aiohttp<4->ome-zarr)
00:34:25 Using cached propcache-0.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (12 kB)
00:34:25 Collecting yarl<2.0,>=1.17.0 (from aiohttp<4->ome-zarr)
00:34:25 Using cached yarl-1.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (73 kB)
00:34:25 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp<4->ome-zarr) (3.10)
00:34:25 Collecting asciitree (from zarr<3,>=2.8.1->ome-zarr)
00:34:25 Using cached asciitree-0.3.3-py3-none-any.whl
00:34:25 Collecting fasteners (from zarr<3,>=2.8.1->ome-zarr)
00:34:25 Using cached fasteners-0.19-py3-none-any.whl.metadata (4.9 kB)
00:34:25 Collecting numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0 (from zarr<3,>=2.8.1->ome-zarr)
00:34:25 Using cached numcodecs-0.15.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.9 kB)
00:34:25 Collecting deprecated (from numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr)
00:34:25 Using cached Deprecated-1.2.18-py2.py3-none-any.whl.metadata (5.7 kB)
00:34:25 Requirement already satisfied: typing-extensions>=4.2 in ./.venv3/lib64/python3.11/site-packages (from aiosignal>=1.4.0->aiohttp<4->ome-zarr) (4.14.1)
00:34:25 Collecting s3fs (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr)
00:34:25 Using cached s3fs-2025.7.0-py3-none-any.whl.metadata (1.4 kB)
00:34:25 Collecting click>=8.1 (from dask->ome-zarr)
00:34:25 Using cached click-8.2.1-py3-none-any.whl.metadata (2.5 kB)
00:34:25 Collecting cloudpickle>=3.0.0 (from dask->ome-zarr)
00:34:25 Using cached cloudpickle-3.1.1-py3-none-any.whl.metadata (7.1 kB)
00:34:25 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask->ome-zarr) (25.0)
00:34:25 Collecting partd>=1.4.0 (from dask->ome-zarr)
00:34:25 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:34:25 Collecting pyyaml>=5.3.1 (from dask->ome-zarr)
00:34:25 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
00:34:25 Collecting importlib_metadata>=4.13.0 (from dask->ome-zarr)
00:34:25 Using cached importlib_metadata-8.7.0-py3-none-any.whl.metadata (4.8 kB)
00:34:25 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask->ome-zarr)
00:34:25 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:34:25 Collecting locket (from partd>=1.4.0->dask->ome-zarr)
00:34:25 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:34:26 Collecting wrapt<2,>=1.10 (from deprecated->numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr)
00:34:26 Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB)
00:34:26 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr) (3.4.2)
00:34:26 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr) (2.5.0)
00:34:26 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr) (2025.7.14)
00:34:26 Collecting aiobotocore<3.0.0,>=2.5.4 (from s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr)
00:34:26 Using cached aiobotocore-2.23.1-py3-none-any.whl.metadata (25 kB)
00:34:26 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr)
00:34:26 Using cached aioitertools-0.12.0-py3-none-any.whl.metadata (3.8 kB)
00:34:26 Collecting botocore<1.38.47,>=1.38.40 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr)
00:34:26 Using cached botocore-1.38.46-py3-none-any.whl.metadata (5.7 kB)
00:34:26 Collecting python-dateutil<3.0.0,>=2.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr)
00:34:26 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:34:26 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr)
00:34:26 Using cached jmespath-1.0.1-py3-none-any.whl.metadata (7.6 kB)
00:34:26 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr) (1.17.0)
00:34:26 Collecting scipy>=1.11.4 (from scikit-image->ome-zarr)
00:34:26 Using cached scipy-1.16.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (61 kB)
00:34:26 Collecting networkx>=3.0 (from scikit-image->ome-zarr)
00:34:26 Using cached networkx-3.5-py3-none-any.whl.metadata (6.3 kB)
00:34:26 Requirement already satisfied: pillow>=10.1 in ./.venv3/lib64/python3.11/site-packages (from scikit-image->ome-zarr) (11.3.0)
00:34:26 Collecting imageio!=2.35.0,>=2.33 (from scikit-image->ome-zarr)
00:34:26 Using cached imageio-2.37.0-py3-none-any.whl.metadata (5.2 kB)
00:34:26 Collecting tifffile>=2022.8.12 (from scikit-image->ome-zarr)
00:34:26 Using cached tifffile-2025.6.11-py3-none-any.whl.metadata (32 kB)
00:34:27 Collecting lazy-loader>=0.4 (from scikit-image->ome-zarr)
00:34:27 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
00:34:27 Using cached ome_zarr-0.11.1-py3-none-any.whl (40 kB)
00:34:27 Using cached aiohttp-3.12.14-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.7 MB)
00:34:27 Using cached multidict-6.6.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:34:27 Using cached yarl-1.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (348 kB)
00:34:27 Using cached zarr-2.18.7-py3-none-any.whl (211 kB)
00:34:27 Using cached numcodecs-0.15.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.9 MB)
00:34:27 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:34:27 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:34:27 Using cached attrs-25.3.0-py3-none-any.whl (63 kB)
00:34:27 Using cached frozenlist-1.7.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (235 kB)
00:34:27 Using cached fsspec-2025.7.0-py3-none-any.whl (199 kB)
00:34:27 Using cached propcache-0.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (213 kB)
00:34:27 Using cached dask-2025.7.0-py3-none-any.whl (1.5 MB)
00:34:27 Using cached click-8.2.1-py3-none-any.whl (102 kB)
00:34:27 Using cached cloudpickle-3.1.1-py3-none-any.whl (20 kB)
00:34:27 Using cached importlib_metadata-8.7.0-py3-none-any.whl (27 kB)
00:34:27 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:34:27 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:34:27 Using cached toolz-1.0.0-py3-none-any.whl (56 kB)
00:34:27 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:34:27 Using cached Deprecated-1.2.18-py2.py3-none-any.whl (10.0 kB)
00:34:27 Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (83 kB)
00:34:27 Using cached fasteners-0.19-py3-none-any.whl (18 kB)
00:34:27 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:34:27 Using cached s3fs-2025.7.0-py3-none-any.whl (30 kB)
00:34:27 Using cached aiobotocore-2.23.1-py3-none-any.whl (84 kB)
00:34:27 Using cached aioitertools-0.12.0-py3-none-any.whl (24 kB)
00:34:27 Using cached botocore-1.38.46-py3-none-any.whl (13.7 MB)
00:34:27 Using cached jmespath-1.0.1-py3-none-any.whl (20 kB)
00:34:27 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:34:27 Using cached scikit_image-0.25.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (14.8 MB)
00:34:27 Using cached imageio-2.37.0-py3-none-any.whl (315 kB)
00:34:27 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:34:27 Using cached networkx-3.5-py3-none-any.whl (2.0 MB)
00:34:27 Using cached scipy-1.16.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (35.3 MB)
00:34:27 Using cached tifffile-2025.6.11-py3-none-any.whl (230 kB)
00:34:27 Installing collected packages: asciitree, zipp, wrapt, toolz, tifffile, scipy, pyyaml, python-dateutil, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, fsspec, frozenlist, fasteners, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, importlib_metadata, deprecated, botocore, aiosignal, numcodecs, dask, aiohttp, zarr, aiobotocore, s3fs, ome-zarr
00:34:39
00:34:39 Successfully installed aiobotocore-2.23.1 aiohappyeyeballs-2.6.1 aiohttp-3.12.14 aioitertools-0.12.0 aiosignal-1.4.0 asciitree-0.3.3 attrs-25.3.0 botocore-1.38.46 click-8.2.1 cloudpickle-3.1.1 dask-2025.7.0 deprecated-1.2.18 fasteners-0.19 frozenlist-1.7.0 fsspec-2025.7.0 imageio-2.37.0 importlib_metadata-8.7.0 jmespath-1.0.1 lazy-loader-0.4 locket-1.0.0 multidict-6.6.3 networkx-3.5 numcodecs-0.15.1 ome-zarr-0.11.1 partd-1.4.2 propcache-0.3.2 python-dateutil-2.9.0.post0 pyyaml-6.0.2 s3fs-2025.7.0 scikit-image-0.25.2 scipy-1.16.0 tifffile-2025.6.11 toolz-1.0.0 wrapt-1.17.2 yarl-1.20.1 zarr-2.18.7 zipp-3.23.0
00:34:39 + pip install omero-rois
00:34:39 Collecting omero-rois
00:34:39 Using cached omero_rois-0.3.0-py3-none-any.whl.metadata (2.4 kB)
00:34:39 Collecting omero-py>=5.6.0 (from omero-rois)
00:34:39 Using cached omero_py-5.21.0-py3-none-any.whl.metadata (6.5 kB)
00:34:39 Collecting urllib3<2 (from omero-py>=5.6.0->omero-rois)
00:34:39 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
00:34:40 Collecting appdirs (from omero-py>=5.6.0->omero-rois)
00:34:40 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:34:40 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-rois) (1.0.0)
00:34:40 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-rois) (2.3.1)
00:34:40 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-rois) (11.3.0)
00:34:40 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-rois) (6.0.2)
00:34:40 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-rois) (3.6.5)
00:34:40 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-rois) (2.32.4)
00:34:40 Collecting portalocker (from omero-py>=5.6.0->omero-rois)
00:34:40 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:34:40 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-rois) (3.4.2)
00:34:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-rois) (3.10)
00:34:40 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-rois) (2025.7.14)
00:34:40 Using cached omero_rois-0.3.0-py3-none-any.whl (11 kB)
00:34:40 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB)
00:34:40 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:34:40 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:34:40 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:34:40 Installing collected packages: appdirs, urllib3, portalocker, omero-py, omero-rois
00:34:40 Attempting uninstall: urllib3
00:34:40 Found existing installation: urllib3 2.5.0
00:34:40 Uninstalling urllib3-2.5.0:
00:34:40 Successfully uninstalled urllib3-2.5.0
00:34:42
00:34:42 Successfully installed appdirs-1.4.4 omero-py-5.21.0 omero-rois-0.3.0 portalocker-3.2.0 urllib3-1.26.20
00:34:42 + pip install boto3
00:34:42 Collecting boto3
00:34:43 Downloading boto3-1.39.10-py3-none-any.whl.metadata (6.7 kB)
00:34:43 Collecting botocore<1.40.0,>=1.39.10 (from boto3)
00:34:43 Downloading botocore-1.39.10-py3-none-any.whl.metadata (5.7 kB)
00:34:43 Requirement already satisfied: jmespath<2.0.0,>=0.7.1 in ./.venv3/lib64/python3.11/site-packages (from boto3) (1.0.1)
00:34:43 Collecting s3transfer<0.14.0,>=0.13.0 (from boto3)
00:34:43 Using cached s3transfer-0.13.1-py3-none-any.whl.metadata (1.7 kB)
00:34:43 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.40.0,>=1.39.10->boto3) (2.9.0.post0)
00:34:43 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.40.0,>=1.39.10->boto3) (1.26.20)
00:34:43 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->botocore<1.40.0,>=1.39.10->boto3) (1.17.0)
00:34:43 Downloading boto3-1.39.10-py3-none-any.whl (139 kB)
00:34:43 Downloading botocore-1.39.10-py3-none-any.whl (13.9 MB)
00:34:44 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.9/13.9 MB 23.0 MB/s eta 0:00:00
00:34:44 Using cached s3transfer-0.13.1-py3-none-any.whl (85 kB)
00:34:44 Installing collected packages: botocore, s3transfer, boto3
00:34:44 Attempting uninstall: botocore
00:34:44 Found existing installation: botocore 1.38.46
00:34:44 Uninstalling botocore-1.38.46:
00:34:44 Successfully uninstalled botocore-1.38.46
00:34:45
00:34:45 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
00:34:45 aiobotocore 2.23.1 requires botocore<1.38.47,>=1.38.40, but you have botocore 1.39.10 which is incompatible.
00:34:45 Successfully installed boto3-1.39.10 botocore-1.39.10 s3transfer-0.13.1
00:34:45 + pip install smart-open
00:34:46 Collecting smart-open
00:34:46 Using cached smart_open-7.3.0.post1-py3-none-any.whl.metadata (24 kB)
00:34:46 Requirement already satisfied: wrapt in ./.venv3/lib64/python3.11/site-packages (from smart-open) (1.17.2)
00:34:46 Using cached smart_open-7.3.0.post1-py3-none-any.whl (61 kB)
00:34:46 Installing collected packages: smart-open
00:34:46 Successfully installed smart-open-7.3.0.post1
00:34:46 + pip install omero-py
00:34:46 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (5.21.0)
00:34:46 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.26.20)
00:34:46 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.4.4)
00:34:46 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:34:46 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.3.1)
00:34:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (11.3.0)
00:34:46 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py) (6.0.2)
00:34:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:34:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.4)
00:34:46 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.2.0)
00:34:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.2)
00:34:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.10)
00:34:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.7.14)
00:34:47 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:34:47 Collecting omero-metadata
00:34:47 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-d9kafn7g/omero-metadata_10044c3bae8e4def90ecfb60a53bbbc4
00:34:47 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-d9kafn7g/omero-metadata_10044c3bae8e4def90ecfb60a53bbbc4
00:34:48 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 82f51bd1e1b767e75d001e582bb4aefa0c356da5
00:34:48 Installing build dependencies: started
00:34:49 Installing build dependencies: finished with status 'done'
00:34:49 Getting requirements to build wheel: started
00:34:49 Getting requirements to build wheel: finished with status 'done'
00:34:49 Preparing metadata (pyproject.toml): started
00:34:49 Preparing metadata (pyproject.toml): finished with status 'done'
00:34:49 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.0)
00:34:49 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.2)
00:34:49 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:34:49 Collecting pandas (from omero-metadata)
00:34:49 Using cached pandas-2.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (91 kB)
00:34:49 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
00:34:49 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:34:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:34:49 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.3.1)
00:34:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (11.3.0)
00:34:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:34:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.4)
00:34:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:34:49 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.2)
00:34:49 Requirement already satisfied: python-dateutil>=2.8.2 in ./.venv3/lib64/python3.11/site-packages (from pandas->omero-metadata) (2.9.0.post0)
00:34:49 Collecting pytz>=2020.1 (from pandas->omero-metadata)
00:34:49 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:34:49 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
00:34:49 Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB)
00:34:49 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:34:50 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.2)
00:34:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
00:34:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.7.14)
00:34:50 Using cached pandas-2.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.4 MB)
00:34:50 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:34:50 Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB)
00:34:50 Building wheels for collected packages: omero-metadata
00:34:50 Building wheel for omero-metadata (pyproject.toml): started
00:34:50 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:34:50 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=7b3558d6fe73a6100bc064499d8c81e345ef825f7de78f6b3a01ef3a21f48910
00:34:50 Stored in directory: /tmp/pip-ephem-wheel-cache-jny3isg5/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:34:50 Successfully built omero-metadata
00:34:50 Installing collected packages: pytz, tzdata, pandas, omero-metadata
00:34:55
00:34:55 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.1 pytz-2025.2 tzdata-2025.2
00:34:55 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:34:55 Collecting omero-cli-render
00:34:55 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-ks3tu70o/omero-cli-render_1f0956d130d54f2d817911b0712be919
00:34:55 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-ks3tu70o/omero-cli-render_1f0956d130d54f2d817911b0712be919
00:34:56 Running command git checkout -b merge_ci --track origin/merge_ci
00:34:56 Switched to a new branch 'merge_ci'
00:34:56 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:34:56 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit cc51578e5151337b266a98d822ca941ae0ea5b88
00:34:56 Installing build dependencies: started
00:34:57 Installing build dependencies: finished with status 'done'
00:34:57 Getting requirements to build wheel: started
00:34:58 Getting requirements to build wheel: finished with status 'done'
00:34:58 Preparing metadata (pyproject.toml): started
00:34:58 Preparing metadata (pyproject.toml): finished with status 'done'
00:34:58 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.2)
00:34:58 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.0)
00:34:58 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
00:34:58 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:34:58 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:34:58 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.3.1)
00:34:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.3.0)
00:34:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:34:58 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.4)
00:34:58 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:34:58 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.2)
00:34:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
00:34:58 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.7.14)
00:34:58 Building wheels for collected packages: omero-cli-render
00:34:58 Building wheel for omero-cli-render (pyproject.toml): started
00:34:58 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:34:58 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19694 sha256=a632c2376959b4eeca333a7abb1db7ff5964c24514f60a9b66463b8207fdf9c1
00:34:58 Stored in directory: /tmp/pip-ephem-wheel-cache-shz1bcij/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:34:58 Successfully built omero-cli-render
00:34:58 Installing collected packages: omero-cli-render
00:34:58 Successfully installed omero-cli-render-0.8.2.dev0
00:34:58 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:34:59 Collecting omero-cli-duplicate
00:34:59 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-5y9snwhx/omero-cli-duplicate_0f3aff82813648bab572b1c561e974e0
00:34:59 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-5y9snwhx/omero-cli-duplicate_0f3aff82813648bab572b1c561e974e0
00:35:00 Running command git checkout -b merge_ci --track origin/merge_ci
00:35:00 Switched to a new branch 'merge_ci'
00:35:00 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:35:00 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 08d7a4ca2553fae68a16effc25bc25e223172c27
00:35:00 Installing build dependencies: started
00:35:01 Installing build dependencies: finished with status 'done'
00:35:01 Getting requirements to build wheel: started
00:35:01 Getting requirements to build wheel: finished with status 'done'
00:35:01 Preparing metadata (pyproject.toml): started
00:35:01 Preparing metadata (pyproject.toml): finished with status 'done'
00:35:01 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.0)
00:35:01 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
00:35:01 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:35:01 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:35:01 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.3.1)
00:35:01 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.3.0)
00:35:01 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
00:35:01 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:35:01 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.4)
00:35:01 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:35:01 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.2)
00:35:01 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
00:35:01 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.7.14)
00:35:01 Building wheels for collected packages: omero-cli-duplicate
00:35:01 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:35:02 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:35:02 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=c537772150e2a83847b71723642900b46997c66a12f414755229b1dbbd929cf2
00:35:02 Stored in directory: /tmp/pip-ephem-wheel-cache-2u9lh0s6/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:35:02 Successfully built omero-cli-duplicate
00:35:02 Installing collected packages: omero-cli-duplicate
00:35:02 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:35:02 + pip install omero-certificates
00:35:02 Collecting omero-certificates
00:35:02 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:35:02 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.0)
00:35:02 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
00:35:02 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:35:02 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:35:02 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.3.1)
00:35:02 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.3.0)
00:35:02 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
00:35:02 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:35:02 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.4)
00:35:02 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:35:02 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.2)
00:35:02 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
00:35:02 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.7.14)
00:35:02 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:35:02 Installing collected packages: omero-certificates
00:35:03 Successfully installed omero-certificates-0.4.0
00:35:03 + for x in *.tar.gz
00:35:03 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:35:03 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:35:03 Installing build dependencies: started
00:35:04 Installing build dependencies: finished with status 'done'
00:35:04 Getting requirements to build wheel: started
00:35:04 Getting requirements to build wheel: finished with status 'done'
00:35:04 Preparing metadata (pyproject.toml): started
00:35:04 Preparing metadata (pyproject.toml): finished with status 'done'
00:35:04 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.0)
00:35:04 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
00:35:04 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:35:04 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:35:04 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.1)
00:35:04 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.3.0)
00:35:04 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
00:35:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:35:04 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.4)
00:35:04 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:35:04 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.2)
00:35:04 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
00:35:04 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.7.14)
00:35:04 Building wheels for collected packages: omero-dropbox
00:35:04 Building wheel for omero-dropbox (pyproject.toml): started
00:35:05 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:35:05 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=db6d22c43a7097f321493acea1ff5cea598b7edad443138ae7f093173393c6e8
00:35:05 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:35:05 Successfully built omero-dropbox
00:35:05 Installing collected packages: omero-dropbox
00:35:05 Successfully installed omero-dropbox-5.7.1.dev0
00:35:05 + for x in *.tar.gz
00:35:05 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
00:35:05 Processing ./omero_marshal-0.9.1.dev0.tar.gz
00:35:05 Installing build dependencies: started
00:35:06 Installing build dependencies: finished with status 'done'
00:35:06 Getting requirements to build wheel: started
00:35:07 Getting requirements to build wheel: finished with status 'done'
00:35:07 Preparing metadata (pyproject.toml): started
00:35:07 Preparing metadata (pyproject.toml): finished with status 'done'
00:35:07 Building wheels for collected packages: omero_marshal
00:35:07 Building wheel for omero_marshal (pyproject.toml): started
00:35:07 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:35:07 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88126 sha256=ec2b8560d1d27963bcfde295d10efe52cb0fbcd41308f00a91a5efb2184a18de
00:35:07 Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18
00:35:07 Successfully built omero_marshal
00:35:07 Installing collected packages: omero_marshal
00:35:07 Successfully installed omero_marshal-0.9.1.dev0
00:35:07 + for x in *.tar.gz
00:35:07 + pip install -U omero_py-5.21.1.dev0.tar.gz
00:35:08 Processing ./omero_py-5.21.1.dev0.tar.gz
00:35:08 Installing build dependencies: started
00:35:09 Installing build dependencies: finished with status 'done'
00:35:09 Getting requirements to build wheel: started
00:35:09 Getting requirements to build wheel: finished with status 'done'
00:35:09 Preparing metadata (pyproject.toml): started
00:35:10 Preparing metadata (pyproject.toml): finished with status 'done'
00:35:10 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.26.20)
00:35:10 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.4.4)
00:35:10 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.0.0)
00:35:10 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (2.3.1)
00:35:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (11.3.0)
00:35:10 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (6.0.2)
00:35:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (3.6.5)
00:35:10 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (2.32.4)
00:35:10 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (3.2.0)
00:35:10 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (3.4.2)
00:35:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (3.10)
00:35:10 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (2025.7.14)
00:35:10 Building wheels for collected packages: omero-py
00:35:10 Building wheel for omero-py (pyproject.toml): started
00:35:11 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:35:11 Created wheel for omero-py: filename=omero_py-5.21.1.dev0-py3-none-any.whl size=2783541 sha256=52609023c141f2ebb9bb51c90194560e9f3e0e254969c99919730d48afc6aace
00:35:11 Stored in directory: /home/omero/.cache/pip/wheels/32/8a/68/256ffa196397e2ec55e537fc96a9b9c4178b3eab623cd87f3d
00:35:11 Successfully built omero-py
00:35:11 Installing collected packages: omero-py
00:35:11 Attempting uninstall: omero-py
00:35:11 Found existing installation: omero-py 5.21.0
00:35:11 Uninstalling omero-py-5.21.0:
00:35:11 Successfully uninstalled omero-py-5.21.0
00:35:13 Successfully installed omero-py-5.21.1.dev0
00:35:13 + for x in *.tar.gz
00:35:13 + pip install -U omero_scripts-5.9.2.dev0.tar.gz
00:35:14 Processing ./omero_scripts-5.9.2.dev0.tar.gz
00:35:14 Installing build dependencies: started
00:35:15 Installing build dependencies: finished with status 'done'
00:35:15 Getting requirements to build wheel: started
00:35:15 Getting requirements to build wheel: finished with status 'done'
00:35:15 Preparing metadata (pyproject.toml): started
00:35:15 Preparing metadata (pyproject.toml): finished with status 'done'
00:35:15 Building wheels for collected packages: omero-scripts
00:35:15 Building wheel for omero-scripts (pyproject.toml): started
00:35:15 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:35:15 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136847 sha256=364e9cfa3bb876b4a555187ad5c17723ff61bb64edc554c21c76dd33b76b7f45
00:35:15 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850
00:35:15 Successfully built omero-scripts
00:35:16 Installing collected packages: omero-scripts
00:35:16 Successfully installed omero-scripts-5.9.2.dev0
00:35:16 + for x in *.tar.gz
00:35:16 + pip install -U omero_web-5.29.2.dev0.tar.gz
00:35:16 Processing ./omero_web-5.29.2.dev0.tar.gz
00:35:17 Installing build dependencies: started
00:35:17 Installing build dependencies: finished with status 'done'
00:35:17 Getting requirements to build wheel: started
00:35:18 Getting requirements to build wheel: finished with status 'done'
00:35:18 Preparing metadata (pyproject.toml): started
00:35:18 Preparing metadata (pyproject.toml): finished with status 'done'
00:35:18 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (5.21.1.dev0)
00:35:18 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.2.dev0)
00:35:18 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:35:18 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.2.dev0)
00:35:18 Using cached django-4.2.23-py3-none-any.whl.metadata (4.2 kB)
00:35:18 Collecting django-pipeline (from omero-web==5.29.2.dev0)
00:35:18 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
00:35:18 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.2.dev0)
00:35:18 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:35:19 Collecting django-csp (from omero-web==5.29.2.dev0)
00:35:19 Using cached django_csp-4.0-py3-none-any.whl.metadata (3.6 kB)
00:35:19 Collecting whitenoise>=5.3.0 (from omero-web==5.29.2.dev0)
00:35:19 Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB)
00:35:19 Collecting gunicorn>=19.3 (from omero-web==5.29.2.dev0)
00:35:19 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
00:35:19 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (0.9.1.dev0)
00:35:19 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (11.3.0)
00:35:19 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (2025.2)
00:35:19 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (3.2.0)
00:35:19 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (25.0)
00:35:19 Collecting importlib-resources (from omero-web==5.29.2.dev0)
00:35:19 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:35:19 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.2.dev0)
00:35:19 Using cached asgiref-3.9.1-py3-none-any.whl.metadata (9.3 kB)
00:35:19 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.2.dev0)
00:35:19 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
00:35:19 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.26.20)
00:35:19 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.4.4)
00:35:19 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.0.0)
00:35:19 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (2.3.1)
00:35:19 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (6.0.2)
00:35:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.6.5)
00:35:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (2.32.4)
00:35:19 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.2.dev0) (65.5.1)
00:35:19 Collecting wheel (from django-pipeline->omero-web==5.29.2.dev0)
00:35:19 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
00:35:19 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.4.2)
00:35:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.10)
00:35:19 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (2025.7.14)
00:35:19 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:35:19 Using cached django-4.2.23-py3-none-any.whl (8.0 MB)
00:35:19 Using cached asgiref-3.9.1-py3-none-any.whl (23 kB)
00:35:19 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:35:19 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
00:35:19 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
00:35:19 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB)
00:35:19 Using cached django_csp-4.0-py3-none-any.whl (25 kB)
00:35:19 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
00:35:19 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:35:19 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
00:35:19 Building wheels for collected packages: omero-web
00:35:19 Building wheel for omero-web (pyproject.toml): started
00:35:20 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:35:20 Created wheel for omero-web: filename=omero_web-5.29.2.dev0-py3-none-any.whl size=2817943 sha256=57a61f808ebbce72678a6cb45142bceb8ba8be12f217e949ae4567cbef2d19b0
00:35:20 Stored in directory: /home/omero/.cache/pip/wheels/8b/82/d4/64ba3d9f4efaa51110316831003d98aee03867a3665750278c
00:35:20 Successfully built omero-web
00:35:20 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web
00:35:23
00:35:23 Successfully installed Django-4.2.23 asgiref-3.9.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-csp-4.0 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.2.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.9.0
00:35:23 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:35:23 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:35:23 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:35:23 --2025-07-22 00:35:23-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:35:23 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.108.133, 185.199.109.133, ...
00:35:23 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
00:35:23 HTTP request sent, awaiting response... 200 OK
00:35:24 Length: 125072 (122K) [text/plain]
00:35:24 Saving to: ‘Figure_To_Pdf.py’
00:35:24
00:35:24 0K .......... .......... .......... .......... .......... 40% 3.92M 0s
00:35:24 50K .......... .......... .......... .......... .......... 81% 13.5M 0s
00:35:24 100K .......... .......... .. 100% 4.12M=0.02s
00:35:24
00:35:24 2025-07-22 00:35:24 (5.59 MB/s) - ‘Figure_To_Pdf.py’ saved [125072/125072]
00:35:24
00:35:24 + chmod 755 Figure_To_Pdf.py
00:35:24 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:35:24 + omero config set omero.db.name OMERO-server
00:35:25 + omero config set omero.db.host pg
00:35:26 + omero config set omero.db.user postgres
00:35:27 + omero config set omero.data.dir /home/omero/omero-server-data
00:35:29 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:35:30 + omero config set omero.db.poolsize 25
00:35:31 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:35:32 + omero config set omero.security.trustStorePassword changeit
00:35:34 + omero config set omero.mail.config true
00:35:35 + omero config set omero.mail.from qa@openmicroscopy.org.uk
00:35:36 + omero config set omero.mail.host smtp.dundee.ac.uk
00:35:37 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:35:39 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:35:40 + omero certificates
00:35:41 OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024)
00:35:41 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:35:41 + '[' false = true ']'
00:35:41 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:35:41 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:35:41 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:35:41 2025-07-22 00:35:41,883 [ omego.db] DEBUG dbcommand => upgrade
00:35:41 2025-07-22 00:35:41,883 [ omego.db] DEBUG dbhost => localhost
00:35:41 2025-07-22 00:35:41,883 [ omego.db] DEBUG dbname => OMERO-server
00:35:41 2025-07-22 00:35:41,883 [ omego.db] DEBUG dbpass => omero
00:35:41 2025-07-22 00:35:41,883 [ omego.db] DEBUG dbuser => omero
00:35:41 2025-07-22 00:35:41,883 [ omego.db] DEBUG rootpass => omero
00:35:41 2025-07-22 00:35:41,883 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:35:41 2025-07-22 00:35:41,883 [omego.extern] INFO Executing : omero version
00:35:42 OMERO.py version:
00:35:43 OMERO.server version:
00:35:43 5.6.3-569-7a130069e4-ice36-b475
00:35:43 5.21.1.dev0
00:35:43 2025-07-22 00:35:43,170 [omego.extern] INFO Completed [1.287 s]
00:35:43 2025-07-22 00:35:43,170 [omego.extern] DEBUG Using omero CLI from omero
00:35:43 2025-07-22 00:35:43,170 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:35:43 2025-07-22 00:35:43,170 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:35:43 2025-07-22 00:35:43,170 [omego.extern] INFO Executing : omero config get --show-password
00:35:44 2025-07-22 00:35:44,413 [omego.extern] INFO Completed [1.243 s]
00:35:44 2025-07-22 00:35:44,413 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:35:44 2025-07-22 00:35:44,413 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:35:44 2025-07-22 00:35:44,419 [omego.extern] INFO Completed [0.006 s]
00:35:44 2025-07-22 00:35:44,419 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.9\n'
00:35:44 2025-07-22 00:35:44,419 [ omego.db] INFO psql version: psql (PostgreSQL) 16.9
00:35:44
00:35:44 2025-07-22 00:35:44,420 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:35:44 2025-07-22 00:35:44,420 [omego.extern] INFO Executing : omero config get --show-password
00:35:45 2025-07-22 00:35:45,692 [omego.extern] INFO Completed [1.272 s]
00:35:45 2025-07-22 00:35:45,692 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:35:45 2025-07-22 00:35:45,692 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:35:45 2025-07-22 00:35:45,702 [omego.extern] INFO Completed [0.010 s]
00:35:45 2025-07-22 00:35:45,702 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.9") at port "5432".\n'
00:35:45 2025-07-22 00:35:45,702 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:35:45 2025-07-22 00:35:45,703 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:35:45 2025-07-22 00:35:45,703 [omego.extern] INFO Executing : omero config get --show-password
00:35:46 2025-07-22 00:35:46,976 [omego.extern] INFO Completed [1.273 s]
00:35:46 2025-07-22 00:35:46,976 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:35:46 2025-07-22 00:35:46,976 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:35:46 2025-07-22 00:35:46,987 [omego.extern] INFO Completed [0.011 s]
00:35:46 2025-07-22 00:35:46,987 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:35:46 2025-07-22 00:35:46,987 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:35:46 2025-07-22 00:35:46,989 [ omego.db] INFO Database is already at OMERO5.4__0
00:35:47 + export LANG=en_US.UTF-8
00:35:47 + LANG=en_US.UTF-8
00:35:47 + export LANGUAGE=en_US:en
00:35:47 + LANGUAGE=en_US:en
00:35:47 + export LC_ALL=en_US.UTF-8
00:35:47 + LC_ALL=en_US.UTF-8
00:35:47 + BUILD_ID=DONT_KILL_ME
00:35:47 + omero admin start
00:35:51 No descriptor given. Using etc/grid/default.xml
00:36:01 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:36:01 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:36:01 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:36:01 Waiting on startup. Use CTRL-C to exit
00:36:02 + omero admin waitup
00:36:03 Waiting on startup. Use CTRL-C to exit
00:36:03 + omero admin diagnostics
00:36:05
00:36:05 ================================================================================
00:36:05 OMERO Diagnostics (admin)
00:36:05 ================================================================================
00:36:05
00:36:05 Commands: java -version 11.0.25 (/usr/bin/java)
00:36:05 Commands: python -V 3.11.11 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:36:05 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:36:05 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:36:05 Commands: psql --version 16.9 (/usr/bin/psql)
00:36:05 Commands: openssl version 3.2.24 (/usr/bin/openssl)
00:36:05
00:36:05 Component: OMERO.py 5.21.1.dev0
00:36:05 Component: OMERO.server 5.6.3-569-7a130069e4-ice36-b475
00:36:05
00:36:05 Server: icegridnode running
00:36:05 Server: Blitz-0 active (pid = 70672, enabled)
00:36:05 Server: Indexer-0 activating (enabled)
00:36:05 Server: OMERO.Glacier2 active (pid = 70702, enabled)
00:36:05 Server: OMERO.IceStorm active (pid = 70729, enabled)
00:36:05 Server: Processor-0 active (pid = 70709, enabled)
00:36:05 Server: Tables-0 active (pid = 70726, enabled)
00:36:05
00:36:05 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:36:05 Log files: Blitz-0.log 33.1 KB errors=0 warnings=1
00:36:05 Log files: DropBox.log n/a
00:36:05 Log files: FileServer.log n/a
00:36:05 Log files: Indexer-0.log 598 B
00:36:05 Log files: MonitorServer.log n/a
00:36:05 Log files: Processor-0.log 735 B
00:36:05 Log files: Tables-0.log 961 B
00:36:05 Log files: TestDropBox.log n/a
00:36:05 Log files: master.err empty
00:36:05 Log files: master.out 30.5 KB
00:36:05 Log files: Total size 0.07 MB
00:36:05
00:36:05
00:36:05 Environment:OMERO_HOME=(unset)
00:36:05 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:36:05 Environment:OMERO_NODE=(unset)
00:36:05 Environment:OMERO_MASTER=(unset)
00:36:05 Environment:OMERO_USERDIR=(unset)
00:36:05 Environment:OMERO_TMPDIR=(unset)
00:36:05 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:36:05 Environment:PYTHONPATH=(unset)
00:36:05 Environment:ICE_HOME=/opt/ice-3.6.5
00:36:05 Environment:LD_LIBRARY_PATH=(unset)
00:36:05 Environment:DYLD_LIBRARY_PATH=(unset)
00:36:05
00:36:05 OMERO SSL port:4064
00:36:05 OMERO TCP port:4063
00:36:05 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:36:05 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:36:05
00:36:05 JVM settings: Blitz-${index} -Xmx7200m
00:36:05 JVM settings: Indexer-${index} -Xmx4800m
00:36:05 JVM settings: PixelData-${index} -Xmx7200m
00:36:05 JVM settings: Repository-${index} -Xmx4800m
00:36:05
00:36:05 Jar: lib/server/formats-api.jar Bio-Formats API 8.3.0-SNAPSHOT 22 July 2025 e90409b0e7be55fec52dd9685392f79e3999cbbc
00:36:05 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.3.0-SNAPSHOT 22 July 2025 e90409b0e7be55fec52dd9685392f79e3999cbbc
00:36:05 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.3.0-SNAPSHOT 22 July 2025 e90409b0e7be55fec52dd9685392f79e3999cbbc
00:36:05 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.2-SNAPSHOT 22 July 2025 11be9a5d5fdc488b42b3222c8e109b62df092829
00:36:05 Jar: lib/server/ome-common.jar OME Common Java 6.0.27-SNAPSHOT 22 July 2025 11be9a5d5fdc488b42b3222c8e109b62df092829
00:36:05 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 22 July 2025 11be9a5d5fdc488b42b3222c8e109b62df092829
00:36:05 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 22 July 2025 11be9a5d5fdc488b42b3222c8e109b62df092829
00:36:05 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 22 July 2025 11be9a5d5fdc488b42b3222c8e109b62df092829
00:36:05 Jar: lib/server/ome-xml.jar OME XML library 6.5.1-SNAPSHOT 22 July 2025 11be9a5d5fdc488b42b3222c8e109b62df092829
00:36:05 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
00:36:05 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
00:36:05 Jar: lib/server/omero-gateway.jar jar 5.10.4-SNAPSHOT
00:36:05 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
00:36:05 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
00:36:05 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
00:36:05 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
00:36:05 Jar: lib/server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.5.1-SNAPSHOT 3ef5b9098bb2681909e83e034d2221e758d9bee5
00:36:05 + deactivate
00:36:05 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:36:05 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:36:05 + export PATH
00:36:05 + unset _OLD_VIRTUAL_PATH
00:36:05 + '[' -n '' ']'
00:36:05 + hash -r
00:36:05 + '[' -n '' ']'
00:36:05 + unset VIRTUAL_ENV
00:36:05 + unset VIRTUAL_ENV_PROMPT
00:36:05 + '[' '!' '' = nondestructive ']'
00:36:05 + unset -f deactivate
00:36:05 Finished: SUCCESS
![[Jenkins]](/jenkins/static/9161e9ff/images/svgs/logo.svg){kind=logo}
