10:14:49 Started by user devspace
10:14:49 Running as SYSTEM
10:14:51 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
10:14:52 [OMERO-server] $ /bin/bash -xe /tmp/jenkins8948528818216704819.sh
10:14:52 + source /home/settings.env
10:14:52 ++ OMERO_DB_HOST=pg
10:14:52 ++ OMERO_DB_USER=postgres
10:14:52 ++ OMERO_DB_PASS=
10:14:52 ++ OMERO_ROOT_PASS=omero
10:14:52 ++ OMERO_DATA_DIR=/OMERO
10:14:52 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:14:52 + OMERO_DB_NAME=OMERO-server
10:14:52 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
10:14:52 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:14:52 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:14:52 + OMERO_DATA_DIR=/home/omero/omero-server-data
10:14:52 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
10:14:52 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
10:14:52 ++ deactivate nondestructive
10:14:52 ++ '[' -n '' ']'
10:14:52 ++ '[' -n '' ']'
10:14:52 ++ hash -r
10:14:52 ++ '[' -n '' ']'
10:14:52 ++ unset VIRTUAL_ENV
10:14:52 ++ unset VIRTUAL_ENV_PROMPT
10:14:52 ++ '[' '!' nondestructive = nondestructive ']'
10:14:52 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
10:14:52 ++ export VIRTUAL_ENV
10:14:52 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:14:52 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:14:52 ++ export PATH
10:14:52 ++ '[' -n '' ']'
10:14:52 ++ '[' -z '' ']'
10:14:52 ++ _OLD_VIRTUAL_PS1=
10:14:52 ++ PS1='(.venv3) '
10:14:52 ++ export PS1
10:14:52 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
10:14:52 ++ export VIRTUAL_ENV_PROMPT
10:14:52 ++ hash -r
10:14:52 + omero admin stop
10:14:54 Server not running
10:14:54 + echo not running
10:14:54 not running
10:14:54 + sleep 5
10:14:59 + deactivate
10:14:59 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
10:14:59 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:14:59 + export PATH
10:14:59 + unset _OLD_VIRTUAL_PATH
10:14:59 + '[' -n '' ']'
10:14:59 + hash -r
10:14:59 + '[' -n '' ']'
10:14:59 + unset VIRTUAL_ENV
10:14:59 + unset VIRTUAL_ENV_PROMPT
10:14:59 + '[' '!' '' = nondestructive ']'
10:14:59 + unset -f deactivate
10:14:59 + rm -rf /home/omero/workspace/OMERO-server/.venv3
10:15:00 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
10:15:05 + '[' false = true ']'
10:15:05 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
10:15:05 Skipping PURGE_DATA:CleanDbAndRepo
10:15:05 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.21.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
10:15:08 Copied 1 artifact from "OMERO-build" build number 481
10:15:08 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 474
10:15:08 Copied 2 artifacts from "OMERO-build-build" build number 504
10:15:08 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 14
10:15:08 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14099806333650450173.sh
10:15:08 + source /home/settings.env
10:15:08 ++ OMERO_DB_HOST=pg
10:15:08 ++ OMERO_DB_USER=postgres
10:15:08 ++ OMERO_DB_PASS=
10:15:08 ++ OMERO_ROOT_PASS=omero
10:15:08 ++ OMERO_DATA_DIR=/OMERO
10:15:08 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:15:08 + OMERO_DB_NAME=OMERO-server
10:15:08 + OMERO_DATA_DIR=/home/omero/omero-server-data
10:15:08 + mkdir -p /home/omero/omero-server-data
10:15:08 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
10:15:08 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:15:08 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:15:08 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
10:15:08 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
10:15:08 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
10:15:08 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
10:15:08 ++ ls OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481.zip
10:15:08 + ZIP=OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481.zip
10:15:08 + '[' '!' -z '' ']'
10:15:08 + DIST=OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481
10:15:08 + unzip OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481.zip
10:15:08 Archive: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481.zip
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/blitz/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/grid/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/profiles/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/templates/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/templates/error/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/templates/grid/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/scripts/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/scripts/luts/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/scripts/luts/janelia/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/scripts/luts/matplotlib/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/scripts/luts/ncsa_paledit/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/scripts/luts/seaborn/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/scripts/luts/wcif/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/scripts/omero/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/scripts/omero/analysis_scripts/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/scripts/omero/annotation_scripts/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/scripts/omero/export_scripts/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/scripts/omero/figure_scripts/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/scripts/omero/import_scripts/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/scripts/omero/util_scripts/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/server/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/share/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/share/licenses/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/misc/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3A__1/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3A__10/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3A__11/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3A__2/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3A__3/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3A__4/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3A__5/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3A__6/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3A__7/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3A__8/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3A__9/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3__4/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3__5/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3__6/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3__7/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO4.1__0/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO4.2__0/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO4.2__0/t/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO4.3__0/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO4.4__0/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO4__0/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.0__0/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.1__1/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.2__0/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.3__0/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4DEV__1/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4DEV__2/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4DEV__3/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4__0/
10:15:08 creating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/var/
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/LICENSE.txt
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/backup.cfg
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/blitz/mail-senders.example
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/blitz/mail-server.example
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/build.properties
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/env.bat
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/env.sh
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/hibernate.properties
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/ice.config
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/logback-cli.xml
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/logback-indexing-cli.xml
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/logback-indexing.xml
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/logback.xml
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/mime.types
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/node1.cfg
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/node2.cfg
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/omero.properties
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/profiles/psql
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/rollover.cfg
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/templates/Windows.cfg
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/templates/error/maintainance.html
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/templates/grid/README
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/templates/grid/default.xml
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/templates/grid/templates.xml
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/templates/grid/windefault.xml
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/templates/ice.config
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/templates/internal.cfg
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/templates/master.cfg
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/templates/robot.template
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/etc/testdropbox.config
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/history.rst
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/OMEZarrReader.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/accessors-smart.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/activation.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/aggdesigner-algorithm.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/aircompressor.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/antlr.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/aopalliance.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/apiguardian-api.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/asm.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/avatica-core.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/avatica-metrics.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/aws-java-sdk-core.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/aws-java-sdk-kms.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/aws-java-sdk-s3.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/base.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/batik-anim.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/batik-awt-util.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/batik-bridge.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/batik-codec.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/batik-constants.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/batik-css.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/batik-dom.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/batik-ext.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/batik-gvt.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/batik-i18n.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/batik-parser.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/batik-script.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/batik-shared-resources.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/batik-svg-dom.jar
10:15:08 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/lib/client/batik-svggen.jar
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10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3A__6/OMERO3A__5.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3A__7/OMERO3A__6.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3A__8/OMERO3A__6.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3A__9/OMERO3A__8.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3__4/OMERO3__1.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3__5/OMERO3__4.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3__6/OMERO3__5.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO3__7/OMERO3__6.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO4.1__0/OMERO4__0.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO4__0/OMERO3A__11.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4__0/psql-footer.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4__0/psql-header.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4__0/schema.sql
10:15:10 inflating: OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481/sql/psql/OMERO5.4__0/views.sql
10:15:10 + rm -f OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481.zip
10:15:11 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-574-9c21c3b0e6-ice36-b481 /home/omero/workspace/OMERO-server/OMERO.server
10:15:11 ++ ls omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar
10:15:11 + JAR=omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar
10:15:11 ++ basename omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar
10:15:11 + JAR_NAME=omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar
10:15:11 + mv /home/omero/workspace/OMERO-server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar
10:15:11 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
10:15:11 --2025-07-31 10:15:11-- https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
10:15:12 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
10:15:12 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
10:15:12 HTTP request sent, awaiting response... 200 OK
10:15:12 Length: 889211 (868K) [application/java-archive]
10:15:12 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
10:15:12
10:15:12 0K .......... .......... .......... .......... .......... 5% 4.04M 0s
10:15:12 50K .......... .......... .......... .......... .......... 11% 9.63M 0s
10:15:12 100K .......... .......... .......... .......... .......... 17% 8.30M 0s
10:15:12 150K .......... .......... .......... .......... .......... 23% 17.1M 0s
10:15:12 200K .......... .......... .......... .......... .......... 28% 8.09M 0s
10:15:12 250K .......... .......... .......... .......... .......... 34% 40.2M 0s
10:15:12 300K .......... .......... .......... .......... .......... 40% 21.0M 0s
10:15:12 350K .......... .......... .......... .......... .......... 46% 29.3M 0s
10:15:12 400K .......... .......... .......... .......... .......... 51% 95.9M 0s
10:15:12 450K .......... .......... .......... .......... .......... 57% 9.31M 0s
10:15:12 500K .......... .......... .......... .......... .......... 63% 31.4M 0s
10:15:12 550K .......... .......... .......... .......... .......... 69% 30.7M 0s
10:15:12 600K .......... .......... .......... .......... .......... 74% 45.9M 0s
10:15:12 650K .......... .......... .......... .......... .......... 80% 38.5M 0s
10:15:12 700K .......... .......... .......... .......... .......... 86% 8.65M 0s
10:15:12 750K .......... .......... .......... .......... .......... 92% 47.1M 0s
10:15:12 800K .......... .......... .......... .......... .......... 97% 32.0M 0s
10:15:12 850K .......... ........ 100% 9.77M=0.06s
10:15:12
10:15:12 2025-07-31 10:15:12 (14.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
10:15:12
10:15:12 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
10:15:12 --2025-07-31 10:15:12-- https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
10:15:12 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
10:15:12 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
10:15:12 HTTP request sent, awaiting response... 200 OK
10:15:12 Length: 73309 (72K) [application/java-archive]
10:15:12 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’
10:15:12
10:15:12 0K .......... .......... .......... .......... .......... 69% 3.66M 0s
10:15:12 50K .......... .......... . 100% 28.4M=0.01s
10:15:12
10:15:12 2025-07-31 10:15:12 (4.96 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309]
10:15:12
10:15:12 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
10:15:12 --2025-07-31 10:15:12-- https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
10:15:12 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
10:15:12 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
10:15:12 HTTP request sent, awaiting response... 200 OK
10:15:12 Length: 63303 (62K) [application/java-archive]
10:15:12 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’
10:15:12
10:15:12 0K .......... .......... .......... .......... .......... 80% 4.19M 0s
10:15:12 50K .......... . 100% 10.4M=0.01s
10:15:12
10:15:12 2025-07-31 10:15:12 (4.73 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303]
10:15:12
10:15:12 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
10:15:12 --2025-07-31 10:15:12-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
10:15:12 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
10:15:12 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
10:15:12 HTTP request sent, awaiting response... 200 OK
10:15:12 Length: 1271272 (1.2M) [application/java-archive]
10:15:12 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’
10:15:12
10:15:12 0K .......... .......... .......... .......... .......... 4% 4.22M 0s
10:15:12 50K .......... .......... .......... .......... .......... 8% 5.16M 0s
10:15:12 100K .......... .......... .......... .......... .......... 12% 21.3M 0s
10:15:12 150K .......... .......... .......... .......... .......... 16% 27.4M 0s
10:15:12 200K .......... .......... .......... .......... .......... 20% 7.75M 0s
10:15:12 250K .......... .......... .......... .......... .......... 24% 34.6M 0s
10:15:12 300K .......... .......... .......... .......... .......... 28% 25.9M 0s
10:15:12 350K .......... .......... .......... .......... .......... 32% 82.7M 0s
10:15:12 400K .......... .......... .......... .......... .......... 36% 23.5M 0s
10:15:12 450K .......... .......... .......... .......... .......... 40% 9.67M 0s
10:15:12 500K .......... .......... .......... .......... .......... 44% 27.2M 0s
10:15:12 550K .......... .......... .......... .......... .......... 48% 31.8M 0s
10:15:12 600K .......... .......... .......... .......... .......... 52% 142M 0s
10:15:12 650K .......... .......... .......... .......... .......... 56% 22.5M 0s
10:15:12 700K .......... .......... .......... .......... .......... 60% 9.54M 0s
10:15:12 750K .......... .......... .......... .......... .......... 64% 29.7M 0s
10:15:12 800K .......... .......... .......... .......... .......... 68% 34.8M 0s
10:15:13 850K .......... .......... .......... .......... .......... 72% 140M 0s
10:15:13 900K .......... .......... .......... .......... .......... 76% 24.6M 0s
10:15:13 950K .......... .......... .......... .......... .......... 80% 9.63M 0s
10:15:13 1000K .......... .......... .......... .......... .......... 84% 29.4M 0s
10:15:13 1050K .......... .......... .......... .......... .......... 88% 92.2M 0s
10:15:13 1100K .......... .......... .......... .......... .......... 92% 32.7M 0s
10:15:13 1150K .......... .......... .......... .......... .......... 96% 24.0M 0s
10:15:13 1200K .......... .......... .......... .......... . 100% 11.1M=0.07s
10:15:13
10:15:13 2025-07-31 10:15:13 (16.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272]
10:15:13
10:15:13 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
10:15:13 ++ deactivate nondestructive
10:15:13 ++ '[' -n '' ']'
10:15:13 ++ '[' -n '' ']'
10:15:13 ++ hash -r
10:15:13 ++ '[' -n '' ']'
10:15:13 ++ unset VIRTUAL_ENV
10:15:13 ++ unset VIRTUAL_ENV_PROMPT
10:15:13 ++ '[' '!' nondestructive = nondestructive ']'
10:15:13 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
10:15:13 ++ export VIRTUAL_ENV
10:15:13 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:15:13 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:15:13 ++ export PATH
10:15:13 ++ '[' -n '' ']'
10:15:13 ++ '[' -z '' ']'
10:15:13 ++ _OLD_VIRTUAL_PS1=
10:15:13 ++ PS1='(.venv3) '
10:15:13 ++ export PS1
10:15:13 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
10:15:13 ++ export VIRTUAL_ENV_PROMPT
10:15:13 ++ hash -r
10:15:13 + pip install -U pip
10:15:13 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
10:15:13 Collecting pip
10:15:14 Downloading pip-25.2-py3-none-any.whl (1.8 MB)
10:15:14 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 17.0 MB/s eta 0:00:00
10:15:14 Installing collected packages: pip
10:15:14 Attempting uninstall: pip
10:15:14 Found existing installation: pip 22.3.1
10:15:14 Uninstalling pip-22.3.1:
10:15:14 Successfully uninstalled pip-22.3.1
10:15:15 Successfully installed pip-25.2
10:15:15 WARNING: There was an error checking the latest version of pip.
10:15:15 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
10:15:16 Collecting zeroc-ice==3.6.5
10:15:16 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
10:15:18 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 16.7 MB/s 0:00:02
10:15:18 Installing collected packages: zeroc-ice
10:15:19 Successfully installed zeroc-ice-3.6.5
10:15:19 + pip install markdown
10:15:20 Collecting markdown
10:15:20 Using cached markdown-3.8.2-py3-none-any.whl.metadata (5.1 kB)
10:15:20 Using cached markdown-3.8.2-py3-none-any.whl (106 kB)
10:15:20 Installing collected packages: markdown
10:15:20 Successfully installed markdown-3.8.2
10:15:20 + pip install reportlab
10:15:21 Collecting reportlab
10:15:21 Using cached reportlab-4.4.3-py3-none-any.whl.metadata (1.7 kB)
10:15:21 Collecting pillow>=9.0.0 (from reportlab)
10:15:21 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
10:15:21 Collecting charset-normalizer (from reportlab)
10:15:21 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
10:15:21 Using cached reportlab-4.4.3-py3-none-any.whl (2.0 MB)
10:15:21 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
10:15:21 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
10:15:21 Installing collected packages: pillow, charset-normalizer, reportlab
10:15:22
10:15:22 Successfully installed charset-normalizer-3.4.2 pillow-11.3.0 reportlab-4.4.3
10:15:22 + pip install pyarrow
10:15:23 Collecting pyarrow
10:15:23 Using cached pyarrow-21.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.3 kB)
10:15:23 Using cached pyarrow-21.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (42.8 MB)
10:15:24 Installing collected packages: pyarrow
10:15:25 Successfully installed pyarrow-21.0.0
10:15:25 + pip install omego
10:15:26 Collecting omego
10:15:26 Using cached omego-0.7.0-py3-none-any.whl
10:15:26 Collecting future (from omego)
10:15:26 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
10:15:26 Collecting yaclifw>=0.1.1 (from omego)
10:15:26 Using cached yaclifw-0.2.0-py3-none-any.whl
10:15:26 Collecting six (from yaclifw>=0.1.1->omego)
10:15:26 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
10:15:26 Using cached future-1.0.0-py3-none-any.whl (491 kB)
10:15:26 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
10:15:26 Installing collected packages: six, future, yaclifw, omego
10:15:26
10:15:26 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
10:15:26 + pip install tables
10:15:27 Collecting tables
10:15:27 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
10:15:27 Collecting numpy>=1.20.0 (from tables)
10:15:27 Using cached numpy-2.3.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
10:15:28 Collecting numexpr>=2.6.2 (from tables)
10:15:28 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
10:15:28 Collecting packaging (from tables)
10:15:28 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
10:15:28 Collecting py-cpuinfo (from tables)
10:15:28 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
10:15:28 Collecting blosc2>=2.3.0 (from tables)
10:15:28 Using cached blosc2-3.6.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.0 kB)
10:15:28 Collecting typing-extensions>=4.4.0 (from tables)
10:15:28 Using cached typing_extensions-4.14.1-py3-none-any.whl.metadata (3.0 kB)
10:15:28 Collecting ndindex (from blosc2>=2.3.0->tables)
10:15:28 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.6 kB)
10:15:29 Collecting msgpack (from blosc2>=2.3.0->tables)
10:15:29 Using cached msgpack-1.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
10:15:29 Collecting platformdirs (from blosc2>=2.3.0->tables)
10:15:29 Using cached platformdirs-4.3.8-py3-none-any.whl.metadata (12 kB)
10:15:29 Collecting requests (from blosc2>=2.3.0->tables)
10:15:29 Using cached requests-2.32.4-py3-none-any.whl.metadata (4.9 kB)
10:15:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.2)
10:15:29 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
10:15:29 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
10:15:29 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
10:15:29 Using cached urllib3-2.5.0-py3-none-any.whl.metadata (6.5 kB)
10:15:29 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
10:15:29 Using cached certifi-2025.7.14-py3-none-any.whl.metadata (2.4 kB)
10:15:29 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
10:15:29 Using cached blosc2-3.6.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.4 MB)
10:15:30 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (401 kB)
10:15:30 Using cached numpy-2.3.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
10:15:30 Using cached typing_extensions-4.14.1-py3-none-any.whl (43 kB)
10:15:30 Using cached msgpack-1.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (429 kB)
10:15:30 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (528 kB)
10:15:30 Using cached packaging-25.0-py3-none-any.whl (66 kB)
10:15:30 Using cached platformdirs-4.3.8-py3-none-any.whl (18 kB)
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10:15:30 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
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10:15:30 Using cached certifi-2025.7.14-py3-none-any.whl (162 kB)
10:15:31 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
10:15:39
10:15:39 Successfully installed blosc2-3.6.1 certifi-2025.7.14 idna-3.10 msgpack-1.1.1 ndindex-1.10.0 numexpr-2.11.0 numpy-2.3.2 packaging-25.0 platformdirs-4.3.8 py-cpuinfo-9.0.0 requests-2.32.4 tables-3.10.2 typing-extensions-4.14.1 urllib3-2.5.0
10:15:39 + pip install jinja2
10:15:40 Collecting jinja2
10:15:40 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
10:15:40 Collecting MarkupSafe>=2.0 (from jinja2)
10:15:40 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
10:15:40 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
10:15:40 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB)
10:15:40 Installing collected packages: MarkupSafe, jinja2
10:15:40
10:15:40 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6
10:15:40 + pip install zarr
10:15:43 Collecting zarr
10:15:43 Downloading zarr-3.1.1-py3-none-any.whl.metadata (10 kB)
10:15:44 Collecting donfig>=0.8 (from zarr)
10:15:44 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
10:15:44 Collecting numcodecs>=0.14 (from numcodecs[crc32c]>=0.14->zarr)
10:15:44 Using cached numcodecs-0.16.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.3 kB)
10:15:44 Requirement already satisfied: numpy>=1.26 in ./.venv3/lib64/python3.11/site-packages (from zarr) (2.3.2)
10:15:44 Requirement already satisfied: packaging>=22.0 in ./.venv3/lib64/python3.11/site-packages (from zarr) (25.0)
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10:15:44 Collecting pyyaml (from donfig>=0.8->zarr)
10:15:44 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
10:15:44 Collecting crc32c>=2.7 (from numcodecs[crc32c]>=0.14->zarr)
10:15:44 Using cached crc32c-2.7.1-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB)
10:15:44 Downloading zarr-3.1.1-py3-none-any.whl (255 kB)
10:15:44 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
10:15:44 Using cached numcodecs-0.16.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.8 MB)
10:15:45 Using cached crc32c-2.7.1-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (53 kB)
10:15:45 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
10:15:45 Installing collected packages: pyyaml, numcodecs, crc32c, donfig, zarr
10:15:45
10:15:45 Successfully installed crc32c-2.7.1 donfig-0.8.1.post1 numcodecs-0.16.1 pyyaml-6.0.2 zarr-3.1.1
10:15:45 + pip install fsspec requests aiohttp s3fs
10:15:46 Collecting fsspec
10:15:46 Using cached fsspec-2025.7.0-py3-none-any.whl.metadata (12 kB)
10:15:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (2.32.4)
10:15:46 Collecting aiohttp
10:15:47 Downloading aiohttp-3.12.15-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.7 kB)
10:15:47 Collecting s3fs
10:15:47 Using cached s3fs-2025.7.0-py3-none-any.whl.metadata (1.4 kB)
10:15:47 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests) (3.4.2)
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10:15:47 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests) (2025.7.14)
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10:15:47 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
10:15:47 Collecting aiosignal>=1.4.0 (from aiohttp)
10:15:47 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
10:15:47 Collecting attrs>=17.3.0 (from aiohttp)
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10:15:47 Collecting frozenlist>=1.1.1 (from aiohttp)
10:15:47 Using cached frozenlist-1.7.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (18 kB)
10:15:47 Collecting multidict<7.0,>=4.5 (from aiohttp)
10:15:47 Using cached multidict-6.6.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
10:15:47 Collecting propcache>=0.2.0 (from aiohttp)
10:15:47 Using cached propcache-0.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (12 kB)
10:15:48 Collecting yarl<2.0,>=1.17.0 (from aiohttp)
10:15:48 Using cached yarl-1.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (73 kB)
10:15:48 Collecting aiobotocore<3.0.0,>=2.5.4 (from s3fs)
10:15:48 Using cached aiobotocore-2.23.2-py3-none-any.whl.metadata (25 kB)
10:15:48 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs)
10:15:48 Using cached aioitertools-0.12.0-py3-none-any.whl.metadata (3.8 kB)
10:15:49 Collecting botocore<1.39.9,>=1.39.7 (from aiobotocore<3.0.0,>=2.5.4->s3fs)
10:15:49 Using cached botocore-1.39.8-py3-none-any.whl.metadata (5.7 kB)
10:15:49 Collecting python-dateutil<3.0.0,>=2.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs)
10:15:49 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
10:15:49 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs)
10:15:49 Using cached jmespath-1.0.1-py3-none-any.whl.metadata (7.6 kB)
10:15:49 Collecting wrapt<2.0.0,>=1.10.10 (from aiobotocore<3.0.0,>=2.5.4->s3fs)
10:15:49 Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB)
10:15:49 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<3.0.0,>=2.5.4->s3fs) (1.17.0)
10:15:49 Requirement already satisfied: typing-extensions>=4.2 in ./.venv3/lib64/python3.11/site-packages (from aiosignal>=1.4.0->aiohttp) (4.14.1)
10:15:49 Using cached fsspec-2025.7.0-py3-none-any.whl (199 kB)
10:15:49 Downloading aiohttp-3.12.15-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.7 MB)
10:15:49 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 19.7 MB/s 0:00:00
10:15:49 Using cached multidict-6.6.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
10:15:49 Using cached yarl-1.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (348 kB)
10:15:49 Using cached s3fs-2025.7.0-py3-none-any.whl (30 kB)
10:15:50 Using cached aiobotocore-2.23.2-py3-none-any.whl (84 kB)
10:15:50 Using cached aioitertools-0.12.0-py3-none-any.whl (24 kB)
10:15:50 Using cached botocore-1.39.8-py3-none-any.whl (13.9 MB)
10:15:50 Using cached jmespath-1.0.1-py3-none-any.whl (20 kB)
10:15:50 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
10:15:50 Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (83 kB)
10:15:50 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
10:15:50 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
10:15:50 Using cached attrs-25.3.0-py3-none-any.whl (63 kB)
10:15:50 Using cached frozenlist-1.7.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (235 kB)
10:15:50 Using cached propcache-0.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (213 kB)
10:15:51 Installing collected packages: wrapt, python-dateutil, propcache, multidict, jmespath, fsspec, frozenlist, attrs, aioitertools, aiohappyeyeballs, yarl, botocore, aiosignal, aiohttp, aiobotocore, s3fs
10:15:52
10:15:52 Successfully installed aiobotocore-2.23.2 aiohappyeyeballs-2.6.1 aiohttp-3.12.15 aioitertools-0.12.0 aiosignal-1.4.0 attrs-25.3.0 botocore-1.39.8 frozenlist-1.7.0 fsspec-2025.7.0 jmespath-1.0.1 multidict-6.6.3 propcache-0.3.2 python-dateutil-2.9.0.post0 s3fs-2025.7.0 wrapt-1.17.2 yarl-1.20.1
10:15:52 + pip install omero-py
10:15:53 Collecting omero-py
10:15:53 Using cached omero_py-5.21.0-py3-none-any.whl.metadata (6.5 kB)
10:15:53 Collecting urllib3<2 (from omero-py)
10:15:53 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
10:15:53 Collecting appdirs (from omero-py)
10:15:53 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
10:15:53 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
10:15:53 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.3.2)
10:15:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (11.3.0)
10:15:53 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py) (6.0.2)
10:15:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
10:15:53 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.4)
10:15:53 Collecting portalocker (from omero-py)
10:15:53 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
10:15:53 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.2)
10:15:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.10)
10:15:53 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.7.14)
10:15:53 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB)
10:15:53 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
10:15:53 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
10:15:53 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
10:15:54 Installing collected packages: appdirs, urllib3, portalocker, omero-py
10:15:54 Attempting uninstall: urllib3
10:15:54 Found existing installation: urllib3 2.5.0
10:15:54 Uninstalling urllib3-2.5.0:
10:15:54 Successfully uninstalled urllib3-2.5.0
10:15:55
10:15:55 Successfully installed appdirs-1.4.4 omero-py-5.21.0 portalocker-3.2.0 urllib3-1.26.20
10:15:55 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
10:15:56 Collecting omero-metadata
10:15:56 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-zua4nn3w/omero-metadata_138783a68f514767b9083bccb4f7f403
10:15:56 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-zua4nn3w/omero-metadata_138783a68f514767b9083bccb4f7f403
10:15:57 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 052d4542a7c8ec107fef272044754aa18f8a72c4
10:15:57 Installing build dependencies: started
10:15:59 Installing build dependencies: finished with status 'done'
10:15:59 Getting requirements to build wheel: started
10:15:59 Getting requirements to build wheel: finished with status 'done'
10:15:59 Preparing metadata (pyproject.toml): started
10:15:59 Preparing metadata (pyproject.toml): finished with status 'done'
10:15:59 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.0)
10:15:59 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.2)
10:15:59 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
10:16:00 Collecting pandas (from omero-metadata)
10:16:00 Using cached pandas-2.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (91 kB)
10:16:00 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
10:16:00 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
10:16:00 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
10:16:00 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.3.2)
10:16:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (11.3.0)
10:16:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
10:16:00 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.4)
10:16:00 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
10:16:00 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.2)
10:16:00 Requirement already satisfied: python-dateutil>=2.8.2 in ./.venv3/lib64/python3.11/site-packages (from pandas->omero-metadata) (2.9.0.post0)
10:16:00 Collecting pytz>=2020.1 (from pandas->omero-metadata)
10:16:00 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
10:16:00 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
10:16:00 Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB)
10:16:00 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
10:16:00 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.2)
10:16:00 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
10:16:00 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.7.14)
10:16:00 Using cached pandas-2.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.4 MB)
10:16:00 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
10:16:01 Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB)
10:16:01 Building wheels for collected packages: omero-metadata
10:16:01 Building wheel for omero-metadata (pyproject.toml): started
10:16:01 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
10:16:01 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=3fb8a78d03b94ad6bbf2b00d7cd1fb673305935a581d54d667a7c7426bf6cd4e
10:16:01 Stored in directory: /tmp/pip-ephem-wheel-cache-1uc9z29b/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
10:16:01 Successfully built omero-metadata
10:16:01 Installing collected packages: pytz, tzdata, pandas, omero-metadata
10:16:06
10:16:06 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.1 pytz-2025.2 tzdata-2025.2
10:16:06 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
10:16:06 Collecting omero-cli-render
10:16:06 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-d5ekh8u1/omero-cli-render_18d3d57924f449a684b19cabebd78551
10:16:06 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-d5ekh8u1/omero-cli-render_18d3d57924f449a684b19cabebd78551
10:16:07 Running command git checkout -b merge_ci --track origin/merge_ci
10:16:07 Switched to a new branch 'merge_ci'
10:16:07 branch 'merge_ci' set up to track 'origin/merge_ci'.
10:16:07 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 1978b918ce0c6c81c44797ef4f7e87acf5ee4012
10:16:07 Installing build dependencies: started
10:16:08 Installing build dependencies: finished with status 'done'
10:16:08 Getting requirements to build wheel: started
10:16:08 Getting requirements to build wheel: finished with status 'done'
10:16:08 Preparing metadata (pyproject.toml): started
10:16:09 Preparing metadata (pyproject.toml): finished with status 'done'
10:16:09 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.2)
10:16:09 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.0)
10:16:09 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
10:16:09 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
10:16:09 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
10:16:09 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.3.2)
10:16:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.3.0)
10:16:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
10:16:09 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.4)
10:16:09 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
10:16:09 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.2)
10:16:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
10:16:09 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.7.14)
10:16:09 Building wheels for collected packages: omero-cli-render
10:16:09 Building wheel for omero-cli-render (pyproject.toml): started
10:16:09 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
10:16:09 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19694 sha256=6c1f92dd2ceff89dcd5bd335e0d4c49852b95df902e5615bbd0944dda2d1bf0b
10:16:09 Stored in directory: /tmp/pip-ephem-wheel-cache-bo5bf38j/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
10:16:09 Successfully built omero-cli-render
10:16:09 Installing collected packages: omero-cli-render
10:16:09 Successfully installed omero-cli-render-0.8.2.dev0
10:16:09 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
10:16:09 Collecting omero-cli-duplicate
10:16:09 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-401y367f/omero-cli-duplicate_258b3868c1e4450289b11fbf9e6ccb1b
10:16:09 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-401y367f/omero-cli-duplicate_258b3868c1e4450289b11fbf9e6ccb1b
10:16:11 Running command git checkout -b merge_ci --track origin/merge_ci
10:16:11 Switched to a new branch 'merge_ci'
10:16:11 branch 'merge_ci' set up to track 'origin/merge_ci'.
10:16:11 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit ede6e0e85a68b699e1a10ddca8af8a99a48db5b5
10:16:11 Installing build dependencies: started
10:16:12 Installing build dependencies: finished with status 'done'
10:16:12 Getting requirements to build wheel: started
10:16:12 Getting requirements to build wheel: finished with status 'done'
10:16:12 Preparing metadata (pyproject.toml): started
10:16:13 Preparing metadata (pyproject.toml): finished with status 'done'
10:16:13 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.0)
10:16:13 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
10:16:13 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
10:16:13 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
10:16:13 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.3.2)
10:16:13 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.3.0)
10:16:13 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
10:16:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
10:16:13 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.4)
10:16:13 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
10:16:13 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.2)
10:16:13 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
10:16:13 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.7.14)
10:16:13 Building wheels for collected packages: omero-cli-duplicate
10:16:13 Building wheel for omero-cli-duplicate (pyproject.toml): started
10:16:13 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
10:16:13 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=3bebe1705dae6791809fc1aaa822f380d4a7fdd90ae578f651e49e566d0985fb
10:16:13 Stored in directory: /tmp/pip-ephem-wheel-cache-9_tlv3a3/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
10:16:13 Successfully built omero-cli-duplicate
10:16:13 Installing collected packages: omero-cli-duplicate
10:16:13 Successfully installed omero-cli-duplicate-0.4.1.dev0
10:16:13 + pip install omero-certificates
10:16:14 Collecting omero-certificates
10:16:14 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
10:16:14 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.0)
10:16:14 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
10:16:14 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
10:16:14 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
10:16:14 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.3.2)
10:16:14 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.3.0)
10:16:14 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
10:16:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
10:16:14 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.4)
10:16:14 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
10:16:14 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.2)
10:16:14 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
10:16:14 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.7.14)
10:16:14 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
10:16:14 Installing collected packages: omero-certificates
10:16:14 Successfully installed omero-certificates-0.4.0
10:16:14 + for x in *.tar.gz
10:16:14 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
10:16:14 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
10:16:14 Installing build dependencies: started
10:16:15 Installing build dependencies: finished with status 'done'
10:16:15 Getting requirements to build wheel: started
10:16:16 Getting requirements to build wheel: finished with status 'done'
10:16:16 Preparing metadata (pyproject.toml): started
10:16:16 Preparing metadata (pyproject.toml): finished with status 'done'
10:16:16 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.0)
10:16:16 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
10:16:16 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
10:16:16 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
10:16:16 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.2)
10:16:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.3.0)
10:16:16 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
10:16:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
10:16:16 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.4)
10:16:16 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
10:16:16 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.2)
10:16:16 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
10:16:16 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.7.14)
10:16:16 Building wheels for collected packages: omero-dropbox
10:16:16 Building wheel for omero-dropbox (pyproject.toml): started
10:16:16 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
10:16:16 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=43f31d828276434dd358356bc88bea251e74b6d9515fd4da3b7b1be758db1ff8
10:16:16 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
10:16:16 Successfully built omero-dropbox
10:16:16 Installing collected packages: omero-dropbox
10:16:16 Successfully installed omero-dropbox-5.7.1.dev0
10:16:16 + for x in *.tar.gz
10:16:16 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
10:16:17 Processing ./omero_marshal-0.9.1.dev0.tar.gz
10:16:17 Installing build dependencies: started
10:16:17 Installing build dependencies: finished with status 'done'
10:16:17 Getting requirements to build wheel: started
10:16:18 Getting requirements to build wheel: finished with status 'done'
10:16:18 Preparing metadata (pyproject.toml): started
10:16:18 Preparing metadata (pyproject.toml): finished with status 'done'
10:16:18 Building wheels for collected packages: omero_marshal
10:16:18 Building wheel for omero_marshal (pyproject.toml): started
10:16:18 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
10:16:18 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88126 sha256=b93b418f65b882c334b31af882c0bf3061bbfa73c371b343ff23d36dc1b3e2ed
10:16:18 Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18
10:16:18 Successfully built omero_marshal
10:16:19 Installing collected packages: omero_marshal
10:16:19 Successfully installed omero_marshal-0.9.1.dev0
10:16:19 + for x in *.tar.gz
10:16:19 + pip install -U omero_py-5.21.1.dev0.tar.gz
10:16:19 Processing ./omero_py-5.21.1.dev0.tar.gz
10:16:19 Installing build dependencies: started
10:16:20 Installing build dependencies: finished with status 'done'
10:16:20 Getting requirements to build wheel: started
10:16:21 Getting requirements to build wheel: finished with status 'done'
10:16:21 Preparing metadata (pyproject.toml): started
10:16:21 Preparing metadata (pyproject.toml): finished with status 'done'
10:16:21 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.26.20)
10:16:21 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.4.4)
10:16:21 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.0.0)
10:16:21 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (2.3.2)
10:16:21 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (11.3.0)
10:16:21 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (6.0.2)
10:16:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (3.6.5)
10:16:21 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (2.32.4)
10:16:21 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (3.2.0)
10:16:21 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (3.4.2)
10:16:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (3.10)
10:16:21 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (2025.7.14)
10:16:21 Building wheels for collected packages: omero-py
10:16:21 Building wheel for omero-py (pyproject.toml): started
10:16:22 Building wheel for omero-py (pyproject.toml): finished with status 'done'
10:16:22 Created wheel for omero-py: filename=omero_py-5.21.1.dev0-py3-none-any.whl size=2783541 sha256=96ddd13b04305e64214c544d4738747d87f4069b707803503bab5d9fe25e5d6d
10:16:22 Stored in directory: /home/omero/.cache/pip/wheels/32/8a/68/256ffa196397e2ec55e537fc96a9b9c4178b3eab623cd87f3d
10:16:22 Successfully built omero-py
10:16:22 Installing collected packages: omero-py
10:16:22 Attempting uninstall: omero-py
10:16:22 Found existing installation: omero-py 5.21.0
10:16:22 Uninstalling omero-py-5.21.0:
10:16:23 Successfully uninstalled omero-py-5.21.0
10:16:25 Successfully installed omero-py-5.21.1.dev0
10:16:25 + for x in *.tar.gz
10:16:25 + pip install -U omero_scripts-5.9.2.dev0.tar.gz
10:16:25 Processing ./omero_scripts-5.9.2.dev0.tar.gz
10:16:25 Installing build dependencies: started
10:16:26 Installing build dependencies: finished with status 'done'
10:16:26 Getting requirements to build wheel: started
10:16:26 Getting requirements to build wheel: finished with status 'done'
10:16:26 Preparing metadata (pyproject.toml): started
10:16:27 Preparing metadata (pyproject.toml): finished with status 'done'
10:16:27 Building wheels for collected packages: omero-scripts
10:16:27 Building wheel for omero-scripts (pyproject.toml): started
10:16:27 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
10:16:27 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136847 sha256=51ccac4c92f25b00958901c2ae4ce6644f65e0d26e78f92216086eeeb0afaab5
10:16:27 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850
10:16:27 Successfully built omero-scripts
10:16:27 Installing collected packages: omero-scripts
10:16:27 Successfully installed omero-scripts-5.9.2.dev0
10:16:27 + for x in *.tar.gz
10:16:27 + pip install -U omero_web-5.29.2.dev0.tar.gz
10:16:27 Processing ./omero_web-5.29.2.dev0.tar.gz
10:16:28 Installing build dependencies: started
10:16:29 Installing build dependencies: finished with status 'done'
10:16:29 Getting requirements to build wheel: started
10:16:29 Getting requirements to build wheel: finished with status 'done'
10:16:29 Preparing metadata (pyproject.toml): started
10:16:29 Preparing metadata (pyproject.toml): finished with status 'done'
10:16:29 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (5.21.1.dev0)
10:16:30 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.2.dev0)
10:16:30 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
10:16:30 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.2.dev0)
10:16:30 Using cached django-4.2.23-py3-none-any.whl.metadata (4.2 kB)
10:16:30 Collecting django-pipeline (from omero-web==5.29.2.dev0)
10:16:30 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
10:16:30 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.2.dev0)
10:16:30 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
10:16:30 Collecting django-csp (from omero-web==5.29.2.dev0)
10:16:30 Using cached django_csp-4.0-py3-none-any.whl.metadata (3.6 kB)
10:16:30 Collecting whitenoise>=5.3.0 (from omero-web==5.29.2.dev0)
10:16:30 Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB)
10:16:30 Collecting gunicorn>=19.3 (from omero-web==5.29.2.dev0)
10:16:30 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
10:16:30 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (0.9.1.dev0)
10:16:30 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (11.3.0)
10:16:30 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (2025.2)
10:16:30 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (3.2.0)
10:16:30 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (25.0)
10:16:30 Collecting importlib-resources (from omero-web==5.29.2.dev0)
10:16:30 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
10:16:30 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.2.dev0)
10:16:30 Using cached asgiref-3.9.1-py3-none-any.whl.metadata (9.3 kB)
10:16:30 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.2.dev0)
10:16:31 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
10:16:31 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.26.20)
10:16:31 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.4.4)
10:16:31 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.0.0)
10:16:31 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (2.3.2)
10:16:31 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (6.0.2)
10:16:31 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.6.5)
10:16:31 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (2.32.4)
10:16:31 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.2.dev0) (65.5.1)
10:16:31 Collecting wheel (from django-pipeline->omero-web==5.29.2.dev0)
10:16:31 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
10:16:31 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.4.2)
10:16:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.10)
10:16:31 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (2025.7.14)
10:16:31 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
10:16:31 Using cached django-4.2.23-py3-none-any.whl (8.0 MB)
10:16:31 Using cached asgiref-3.9.1-py3-none-any.whl (23 kB)
10:16:31 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
10:16:31 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
10:16:31 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
10:16:31 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB)
10:16:31 Using cached django_csp-4.0-py3-none-any.whl (25 kB)
10:16:31 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
10:16:31 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
10:16:31 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
10:16:31 Building wheels for collected packages: omero-web
10:16:31 Building wheel for omero-web (pyproject.toml): started
10:16:33 Building wheel for omero-web (pyproject.toml): finished with status 'done'
10:16:33 Created wheel for omero-web: filename=omero_web-5.29.2.dev0-py3-none-any.whl size=2817943 sha256=40dd6343583b148a6f4da92be69c323e4cc923cfb766b0b649b103cdb2040e23
10:16:33 Stored in directory: /home/omero/.cache/pip/wheels/8b/82/d4/64ba3d9f4efaa51110316831003d98aee03867a3665750278c
10:16:33 Successfully built omero-web
10:16:33 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web
10:16:35
10:16:35 Successfully installed Django-4.2.23 asgiref-3.9.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-csp-4.0 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.2.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.9.0
10:16:36 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
10:16:36 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
10:16:36 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
10:16:36 --2025-07-31 10:16:36-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
10:16:36 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ...
10:16:36 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
10:16:36 HTTP request sent, awaiting response... 200 OK
10:16:36 Length: 125072 (122K) [text/plain]
10:16:36 Saving to: ‘Figure_To_Pdf.py’
10:16:36
10:16:36 0K .......... .......... .......... .......... .......... 40% 3.87M 0s
10:16:36 50K .......... .......... .......... .......... .......... 81% 13.7M 0s
10:16:36 100K .......... .......... .. 100% 4.22M=0.02s
10:16:36
10:16:36 2025-07-31 10:16:36 (5.60 MB/s) - ‘Figure_To_Pdf.py’ saved [125072/125072]
10:16:36
10:16:36 + chmod 755 Figure_To_Pdf.py
10:16:36 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
10:16:36 + omero config set omero.db.name OMERO-server
10:16:37 + omero config set omero.db.host pg
10:16:38 + omero config set omero.db.user postgres
10:16:40 + omero config set omero.data.dir /home/omero/omero-server-data
10:16:41 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
10:16:42 + omero config set omero.db.poolsize 25
10:16:44 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
10:16:45 + omero config set omero.security.trustStorePassword changeit
10:16:46 + omero config set omero.mail.config true
10:16:47 + omero config set omero.mail.from qa@openmicroscopy.org.uk
10:16:49 + omero config set omero.mail.host smtp.dundee.ac.uk
10:16:50 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
10:16:51 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
10:16:52 + omero certificates
10:16:53 OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024)
10:16:54 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
10:16:54 + '[' false = true ']'
10:16:54 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
10:16:54 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
10:16:54 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
10:16:54 2025-07-31 10:16:54,426 [ omego.db] DEBUG dbcommand => upgrade
10:16:54 2025-07-31 10:16:54,426 [ omego.db] DEBUG dbhost => localhost
10:16:54 2025-07-31 10:16:54,426 [ omego.db] DEBUG dbname => OMERO-server
10:16:54 2025-07-31 10:16:54,426 [ omego.db] DEBUG dbpass => omero
10:16:54 2025-07-31 10:16:54,426 [ omego.db] DEBUG dbuser => omero
10:16:54 2025-07-31 10:16:54,427 [ omego.db] DEBUG rootpass => omero
10:16:54 2025-07-31 10:16:54,427 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
10:16:54 2025-07-31 10:16:54,427 [omego.extern] INFO Executing : omero version
10:16:55 OMERO.py version:
10:16:55 OMERO.server version:
10:16:55 5.6.3-574-9c21c3b0e6-ice36-b481
10:16:55 5.21.1.dev0
10:16:55 2025-07-31 10:16:55,715 [omego.extern] INFO Completed [1.289 s]
10:16:55 2025-07-31 10:16:55,715 [omego.extern] DEBUG Using omero CLI from omero
10:16:55 2025-07-31 10:16:55,715 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
10:16:55 2025-07-31 10:16:55,716 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:16:55 2025-07-31 10:16:55,716 [omego.extern] INFO Executing : omero config get --show-password
10:16:56 2025-07-31 10:16:56,960 [omego.extern] INFO Completed [1.244 s]
10:16:56 2025-07-31 10:16:56,960 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:16:56 2025-07-31 10:16:56,960 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
10:16:57 2025-07-31 10:16:57,355 [omego.extern] INFO Completed [0.394 s]
10:16:57 2025-07-31 10:16:57,355 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.9\n'
10:16:57 2025-07-31 10:16:57,355 [ omego.db] INFO psql version: psql (PostgreSQL) 16.9
10:16:57
10:16:57 2025-07-31 10:16:57,355 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:16:57 2025-07-31 10:16:57,355 [omego.extern] INFO Executing : omero config get --show-password
10:16:58 2025-07-31 10:16:58,592 [omego.extern] INFO Completed [1.237 s]
10:16:58 2025-07-31 10:16:58,592 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:16:58 2025-07-31 10:16:58,592 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
10:16:58 2025-07-31 10:16:58,806 [omego.extern] INFO Completed [0.214 s]
10:16:58 2025-07-31 10:16:58,806 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.8") at port "5432".\n'
10:16:58 2025-07-31 10:16:58,806 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
10:16:58 2025-07-31 10:16:58,806 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:16:58 2025-07-31 10:16:58,807 [omego.extern] INFO Executing : omero config get --show-password
10:17:00 2025-07-31 10:17:00,043 [omego.extern] INFO Completed [1.236 s]
10:17:00 2025-07-31 10:17:00,043 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:17:00 2025-07-31 10:17:00,043 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
10:17:01 2025-07-31 10:17:01,069 [omego.extern] INFO Completed [1.026 s]
10:17:01 2025-07-31 10:17:01,069 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
10:17:01 2025-07-31 10:17:01,070 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
10:17:01 2025-07-31 10:17:01,071 [ omego.db] INFO Database is already at OMERO5.4__0
10:17:01 + export LANG=en_US.UTF-8
10:17:01 + LANG=en_US.UTF-8
10:17:01 + export LANGUAGE=en_US:en
10:17:01 + LANGUAGE=en_US:en
10:17:01 + export LC_ALL=en_US.UTF-8
10:17:01 + LC_ALL=en_US.UTF-8
10:17:01 + BUILD_ID=DONT_KILL_ME
10:17:01 + omero admin start
10:17:06 No descriptor given. Using etc/grid/default.xml
10:17:17 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
10:17:17 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
10:17:17 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
10:17:17 Waiting on startup. Use CTRL-C to exit
10:17:18 + omero admin waitup
10:17:19 Waiting on startup. Use CTRL-C to exit
10:17:19 + omero admin diagnostics
10:17:20
10:17:20 ================================================================================
10:17:20 OMERO Diagnostics (admin)
10:17:20 ================================================================================
10:17:20
10:17:20 Commands: java -version 11.0.25 (/usr/bin/java)
10:17:20 Commands: python -V 3.11.11 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
10:17:20 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
10:17:20 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
10:17:20 Commands: psql --version 16.9 (/usr/bin/psql)
10:17:20 Commands: openssl version 3.2.24 (/usr/bin/openssl)
10:17:20
10:17:20 Component: OMERO.py 5.21.1.dev0
10:17:20 Component: OMERO.server 5.6.3-574-9c21c3b0e6-ice36-b481
10:17:20
10:17:20 Server: icegridnode running
10:17:20 Server: Blitz-0 active (pid = 3383, enabled)
10:17:20 Server: Indexer-0 activating (enabled)
10:17:20 Server: OMERO.Glacier2 active (pid = 3411, enabled)
10:17:20 Server: OMERO.IceStorm active (pid = 3442, enabled)
10:17:20 Server: Processor-0 activating (enabled)
10:17:21 Server: Tables-0 activating (enabled)
10:17:21
10:17:21 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
10:17:21 Log files: Blitz-0.log 9.8 KB errors=0 warnings=1
10:17:21 Log files: DropBox.log n/a
10:17:21 Log files: FileServer.log n/a
10:17:21 Log files: Indexer-0.log 598 B
10:17:21 Log files: MonitorServer.log n/a
10:17:21 Log files: Processor-0.log 592 B
10:17:21 Log files: Tables-0.log 841 B
10:17:21 Log files: TestDropBox.log n/a
10:17:21 Log files: master.err empty
10:17:21 Log files: master.out 30.5 KB
10:17:21 Log files: Total size 0.04 MB
10:17:21
10:17:21
10:17:21 Environment:OMERO_HOME=(unset)
10:17:21 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:17:21 Environment:OMERO_NODE=(unset)
10:17:21 Environment:OMERO_MASTER=(unset)
10:17:21 Environment:OMERO_USERDIR=(unset)
10:17:21 Environment:OMERO_TMPDIR=(unset)
10:17:21 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:17:21 Environment:PYTHONPATH=(unset)
10:17:21 Environment:ICE_HOME=/opt/ice-3.6.5
10:17:21 Environment:LD_LIBRARY_PATH=(unset)
10:17:21 Environment:DYLD_LIBRARY_PATH=(unset)
10:17:21
10:17:21 OMERO SSL port:4064
10:17:21 OMERO TCP port:4063
10:17:21 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
10:17:21 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
10:17:21
10:17:21 JVM settings: Blitz-${index} -Xmx7200m
10:17:21 JVM settings: Indexer-${index} -Xmx4800m
10:17:21 JVM settings: PixelData-${index} -Xmx7200m
10:17:21 JVM settings: Repository-${index} -Xmx4800m
10:17:21
10:17:21 Jar: lib/server/formats-api.jar Bio-Formats API 8.3.0-SNAPSHOT 28 July 2025 626d45844c7abef5714d6297cd6c74bc365e2e1f
10:17:21 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.3.0-SNAPSHOT 28 July 2025 626d45844c7abef5714d6297cd6c74bc365e2e1f
10:17:21 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.3.0-SNAPSHOT 28 July 2025 626d45844c7abef5714d6297cd6c74bc365e2e1f
10:17:21 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.2-SNAPSHOT 28 July 2025 9f4bb10dfcc0b071c0b852bc8a6db1ad535c760d
10:17:21 Jar: lib/server/ome-common.jar OME Common Java 6.0.27-SNAPSHOT 28 July 2025 9f4bb10dfcc0b071c0b852bc8a6db1ad535c760d
10:17:21 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 28 July 2025 9f4bb10dfcc0b071c0b852bc8a6db1ad535c760d
10:17:21 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 28 July 2025 9f4bb10dfcc0b071c0b852bc8a6db1ad535c760d
10:17:21 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 28 July 2025 9f4bb10dfcc0b071c0b852bc8a6db1ad535c760d
10:17:21 Jar: lib/server/ome-xml.jar OME XML library 6.5.1-SNAPSHOT 28 July 2025 9f4bb10dfcc0b071c0b852bc8a6db1ad535c760d
10:17:21 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
10:17:21 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
10:17:21 Jar: lib/server/omero-gateway.jar jar 5.10.4-SNAPSHOT
10:17:21 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
10:17:21 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
10:17:21 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
10:17:21 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
10:17:21 Jar: lib/server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.5.1-SNAPSHOT d12a21a0936dad24eca8c34524831df8369b0488
10:17:21 + deactivate
10:17:21 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
10:17:21 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:17:21 + export PATH
10:17:21 + unset _OLD_VIRTUAL_PATH
10:17:21 + '[' -n '' ']'
10:17:21 + hash -r
10:17:21 + '[' -n '' ']'
10:17:21 + unset VIRTUAL_ENV
10:17:21 + unset VIRTUAL_ENV_PROMPT
10:17:21 + '[' '!' '' = nondestructive ']'
10:17:21 + unset -f deactivate
10:17:21 Finished: SUCCESS
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