00:33:46 Started by upstream project "Trigger" build number 561
00:33:46 originally caused by:
00:33:46 Started by timer
00:33:46 Running as SYSTEM
00:33:46 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:33:46 [OMERO-server] $ /bin/bash -xe /tmp/jenkins1249672970851133234.sh
00:33:46 + source /home/settings.env
00:33:46 ++ OMERO_DB_HOST=pg
00:33:46 ++ OMERO_DB_USER=postgres
00:33:46 ++ OMERO_DB_PASS=
00:33:46 ++ OMERO_ROOT_PASS=omero
00:33:46 ++ OMERO_DATA_DIR=/OMERO
00:33:46 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:33:46 + OMERO_DB_NAME=OMERO-server
00:33:46 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:33:46 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:33:46 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:33:46 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:33:46 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:33:46 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:33:46 ++ deactivate nondestructive
00:33:46 ++ '[' -n '' ']'
00:33:46 ++ '[' -n '' ']'
00:33:46 ++ hash -r
00:33:46 ++ '[' -n '' ']'
00:33:46 ++ unset VIRTUAL_ENV
00:33:46 ++ unset VIRTUAL_ENV_PROMPT
00:33:46 ++ '[' '!' nondestructive = nondestructive ']'
00:33:46 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:33:46 ++ export VIRTUAL_ENV
00:33:46 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:33:46 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:33:46 ++ export PATH
00:33:46 ++ '[' -n '' ']'
00:33:46 ++ '[' -z '' ']'
00:33:46 ++ _OLD_VIRTUAL_PS1=
00:33:46 ++ PS1='(.venv3) '
00:33:46 ++ export PS1
00:33:46 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:33:46 ++ export VIRTUAL_ENV_PROMPT
00:33:46 ++ hash -r
00:33:46 + omero admin stop
00:33:46 /tmp/jenkins1249672970851133234.sh: line 10: omero: command not found
00:33:46 + echo not running
00:33:46 not running
00:33:46 + sleep 5
00:33:51 + deactivate
00:33:51 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:33:51 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:33:51 + export PATH
00:33:51 + unset _OLD_VIRTUAL_PATH
00:33:51 + '[' -n '' ']'
00:33:51 + hash -r
00:33:51 + '[' -n '' ']'
00:33:51 + unset VIRTUAL_ENV
00:33:51 + unset VIRTUAL_ENV_PROMPT
00:33:51 + '[' '!' '' = nondestructive ']'
00:33:51 + unset -f deactivate
00:33:51 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:33:51 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:33:55 + '[' false = true ']'
00:33:55 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:33:55 Skipping PURGE_DATA:CleanDbAndRepo
00:33:55 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.21.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT-with-dependencies.jar /home/omero/workspace/OMERO-server/version.properties
00:33:57 Copied 1 artifact from "OMERO-build" build number 474
00:33:57 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 467
00:33:57 Copied 2 artifacts from "OMERO-build-build" build number 497
00:33:58 Copied 2 artifacts from "OMERO-zarr-pixel-buffer-build" build number 7
00:33:58 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4077613155087058311.sh
00:33:58 + source /home/settings.env
00:33:58 ++ OMERO_DB_HOST=pg
00:33:58 ++ OMERO_DB_USER=postgres
00:33:58 ++ OMERO_DB_PASS=
00:33:58 ++ OMERO_ROOT_PASS=omero
00:33:58 ++ OMERO_DATA_DIR=/OMERO
00:33:58 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:33:58 + OMERO_DB_NAME=OMERO-server
00:33:58 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:33:58 + mkdir -p /home/omero/omero-server-data
00:33:58 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:33:58 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:33:58 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:33:58 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:33:58 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:33:58 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:33:58 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:33:58 ++ ls OMERO.server-5.6.3-571-dce7a3b036-ice36-b474.zip
00:33:58 + ZIP=OMERO.server-5.6.3-571-dce7a3b036-ice36-b474.zip
00:33:58 + '[' '!' -z '' ']'
00:33:58 + DIST=OMERO.server-5.6.3-571-dce7a3b036-ice36-b474
00:33:58 + unzip OMERO.server-5.6.3-571-dce7a3b036-ice36-b474.zip
00:33:58 Archive: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474.zip
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/blitz/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/grid/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/profiles/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/templates/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/templates/error/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/templates/grid/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/scripts/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/scripts/luts/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/scripts/luts/janelia/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/scripts/luts/matplotlib/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/scripts/luts/ncsa_paledit/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/scripts/luts/seaborn/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/scripts/luts/wcif/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/scripts/omero/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/scripts/omero/analysis_scripts/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/scripts/omero/annotation_scripts/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/scripts/omero/export_scripts/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/scripts/omero/figure_scripts/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/scripts/omero/import_scripts/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/scripts/omero/util_scripts/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/server/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/share/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/share/licenses/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/misc/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO3A__1/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO3A__10/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO3A__11/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO3A__2/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO3A__3/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO3A__4/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO3A__5/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO3A__6/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO3A__7/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO3A__8/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO3A__9/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO3__4/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO3__5/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO3__6/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO3__7/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO4.1__0/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO4.2__0/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO4.2__0/t/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO4.3__0/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO4.4__0/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO4__0/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.0__0/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.1__1/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.2__0/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.3__0/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4DEV__1/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4DEV__2/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4DEV__3/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4__0/
00:33:58 creating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/var/
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/LICENSE.txt
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/backup.cfg
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/blitz/mail-senders.example
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/blitz/mail-server.example
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/build.properties
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/env.bat
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/env.sh
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/hibernate.properties
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/ice.config
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/logback-cli.xml
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/logback-indexing-cli.xml
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/logback-indexing.xml
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/logback.xml
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/mime.types
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/node1.cfg
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/node2.cfg
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/omero.properties
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/profiles/psql
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/rollover.cfg
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/templates/Windows.cfg
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/templates/error/maintainance.html
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/templates/grid/README
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/templates/grid/default.xml
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/templates/grid/templates.xml
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/templates/grid/windefault.xml
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/templates/ice.config
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/templates/internal.cfg
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/templates/master.cfg
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/templates/robot.template
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/etc/testdropbox.config
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/history.rst
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/OMEZarrReader.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/accessors-smart.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/activation.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/aggdesigner-algorithm.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/aircompressor.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/antlr.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/aopalliance.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/apiguardian-api.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/asm.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/avatica-core.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/avatica-metrics.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/aws-java-sdk-core.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/aws-java-sdk-kms.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/aws-java-sdk-s3.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/base.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-anim.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-awt-util.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-bridge.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-codec.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-constants.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-css.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-dom.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-ext.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-gvt.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-i18n.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-parser.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-script.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-shared-resources.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-svg-dom.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-svggen.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-transcoder.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-util.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/batik-xml.jar
00:33:58 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/lib/client/btm.jar
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00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4__0/psql-footer.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4__0/psql-header.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4__0/schema.sql
00:34:00 inflating: OMERO.server-5.6.3-571-dce7a3b036-ice36-b474/sql/psql/OMERO5.4__0/views.sql
00:34:00 + rm -f OMERO.server-5.6.3-571-dce7a3b036-ice36-b474.zip
00:34:00 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-571-dce7a3b036-ice36-b474 /home/omero/workspace/OMERO-server/OMERO.server
00:34:00 ++ ls omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar omero-zarr-pixel-buffer-0.5.1-SNAPSHOT-with-dependencies.jar
00:34:00 + JAR='omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar
00:34:00 omero-zarr-pixel-buffer-0.5.1-SNAPSHOT-with-dependencies.jar'
00:34:00 ++ basename omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar omero-zarr-pixel-buffer-0.5.1-SNAPSHOT-with-dependencies.jar
00:34:00 + JAR_NAME=omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar
00:34:00 + mv /home/omero/workspace/OMERO-server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar
00:34:00 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:34:00 --2025-07-21 00:34:00-- https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:34:00 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
00:34:00 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
00:34:00 HTTP request sent, awaiting response... 200 OK
00:34:00 Length: 889211 (868K) [application/java-archive]
00:34:00 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:34:00
00:34:00 0K .......... .......... .......... .......... .......... 5% 3.85M 0s
00:34:00 50K .......... .......... .......... .......... .......... 11% 12.4M 0s
00:34:00 100K .......... .......... .......... .......... .......... 17% 6.90M 0s
00:34:00 150K .......... .......... .......... .......... .......... 23% 26.8M 0s
00:34:00 200K .......... .......... .......... .......... .......... 28% 25.1M 0s
00:34:00 250K .......... .......... .......... .......... .......... 34% 7.79M 0s
00:34:00 300K .......... .......... .......... .......... .......... 40% 85.2M 0s
00:34:00 350K .......... .......... .......... .......... .......... 46% 32.9M 0s
00:34:00 400K .......... .......... .......... .......... .......... 51% 25.6M 0s
00:34:00 450K .......... .......... .......... .......... .......... 57% 11.1M 0s
00:34:00 500K .......... .......... .......... .......... .......... 63% 24.5M 0s
00:34:00 550K .......... .......... .......... .......... .......... 69% 44.8M 0s
00:34:00 600K .......... .......... .......... .......... .......... 74% 37.1M 0s
00:34:00 650K .......... .......... .......... .......... .......... 80% 22.5M 0s
00:34:00 700K .......... .......... .......... .......... .......... 86% 9.89M 0s
00:34:00 750K .......... .......... .......... .......... .......... 92% 26.9M 0s
00:34:00 800K .......... .......... .......... .......... .......... 97% 29.5M 0s
00:34:00 850K .......... ........ 100% 225M=0.06s
00:34:00
00:34:00 2025-07-21 00:34:00 (14.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:34:00
00:34:00 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
00:34:00 --2025-07-21 00:34:00-- https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
00:34:00 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
00:34:00 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
00:34:00 HTTP request sent, awaiting response... 200 OK
00:34:00 Length: 73309 (72K) [application/java-archive]
00:34:00 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’
00:34:00
00:34:00 0K .......... .......... .......... .......... .......... 69% 3.75M 0s
00:34:00 50K .......... .......... . 100% 23.5M=0.01s
00:34:00
00:34:00 2025-07-21 00:34:00 (5.03 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309]
00:34:00
00:34:00 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
00:34:00 --2025-07-21 00:34:00-- https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
00:34:01 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
00:34:01 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
00:34:01 HTTP request sent, awaiting response... 200 OK
00:34:01 Length: 63303 (62K) [application/java-archive]
00:34:01 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’
00:34:01
00:34:01 0K .......... .......... .......... .......... .......... 80% 4.13M 0s
00:34:01 50K .......... . 100% 11.1M=0.01s
00:34:01
00:34:01 2025-07-21 00:34:01 (4.70 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303]
00:34:01
00:34:01 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
00:34:01 --2025-07-21 00:34:01-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
00:34:01 Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209
00:34:01 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected.
00:34:01 HTTP request sent, awaiting response... 200 OK
00:34:01 Length: 1271272 (1.2M) [application/java-archive]
00:34:01 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’
00:34:01
00:34:01 0K .......... .......... .......... .......... .......... 4% 4.24M 0s
00:34:01 50K .......... .......... .......... .......... .......... 8% 5.25M 0s
00:34:01 100K .......... .......... .......... .......... .......... 12% 21.8M 0s
00:34:01 150K .......... .......... .......... .......... .......... 16% 18.1M 0s
00:34:01 200K .......... .......... .......... .......... .......... 20% 8.76M 0s
00:34:01 250K .......... .......... .......... .......... .......... 24% 37.8M 0s
00:34:01 300K .......... .......... .......... .......... .......... 28% 48.9M 0s
00:34:01 350K .......... .......... .......... .......... .......... 32% 22.8M 0s
00:34:01 400K .......... .......... .......... .......... .......... 36% 41.3M 0s
00:34:01 450K .......... .......... .......... .......... .......... 40% 8.96M 0s
00:34:01 500K .......... .......... .......... .......... .......... 44% 31.7M 0s
00:34:01 550K .......... .......... .......... .......... .......... 48% 143M 0s
00:34:01 600K .......... .......... .......... .......... .......... 52% 22.7M 0s
00:34:01 650K .......... .......... .......... .......... .......... 56% 33.7M 0s
00:34:01 700K .......... .......... .......... .......... .......... 60% 9.33M 0s
00:34:01 750K .......... .......... .......... .......... .......... 64% 32.1M 0s
00:34:01 800K .......... .......... .......... .......... .......... 68% 21.2M 0s
00:34:01 850K .......... .......... .......... .......... .......... 72% 137M 0s
00:34:01 900K .......... .......... .......... .......... .......... 76% 34.7M 0s
00:34:01 950K .......... .......... .......... .......... .......... 80% 9.44M 0s
00:34:01 1000K .......... .......... .......... .......... .......... 84% 31.8M 0s
00:34:01 1050K .......... .......... .......... .......... .......... 88% 152M 0s
00:34:01 1100K .......... .......... .......... .......... .......... 92% 13.8M 0s
00:34:01 1150K .......... .......... .......... .......... .......... 96% 91.3M 0s
00:34:01 1200K .......... .......... .......... .......... . 100% 94.7M=0.07s
00:34:01
00:34:01 2025-07-21 00:34:01 (17.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272]
00:34:01
00:34:01 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:34:01 ++ deactivate nondestructive
00:34:01 ++ '[' -n '' ']'
00:34:01 ++ '[' -n '' ']'
00:34:01 ++ hash -r
00:34:01 ++ '[' -n '' ']'
00:34:01 ++ unset VIRTUAL_ENV
00:34:01 ++ unset VIRTUAL_ENV_PROMPT
00:34:01 ++ '[' '!' nondestructive = nondestructive ']'
00:34:01 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:34:01 ++ export VIRTUAL_ENV
00:34:01 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:34:01 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:34:01 ++ export PATH
00:34:01 ++ '[' -n '' ']'
00:34:01 ++ '[' -z '' ']'
00:34:01 ++ _OLD_VIRTUAL_PS1=
00:34:01 ++ PS1='(.venv3) '
00:34:01 ++ export PS1
00:34:01 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:34:01 ++ export VIRTUAL_ENV_PROMPT
00:34:01 ++ hash -r
00:34:01 + pip install -U pip
00:34:01 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:34:01 Collecting pip
00:34:01 Using cached pip-25.1.1-py3-none-any.whl (1.8 MB)
00:34:01 Installing collected packages: pip
00:34:01 Attempting uninstall: pip
00:34:01 Found existing installation: pip 22.3.1
00:34:02 Uninstalling pip-22.3.1:
00:34:02 Successfully uninstalled pip-22.3.1
00:34:03 Successfully installed pip-25.1.1
00:34:03 WARNING: There was an error checking the latest version of pip.
00:34:03 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:34:03 Collecting zeroc-ice==3.6.5
00:34:03 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:34:05 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 21.9 MB/s eta 0:00:00
00:34:05 Installing collected packages: zeroc-ice
00:34:06 Successfully installed zeroc-ice-3.6.5
00:34:06 + pip install markdown
00:34:07 Collecting markdown
00:34:07 Using cached markdown-3.8.2-py3-none-any.whl.metadata (5.1 kB)
00:34:07 Using cached markdown-3.8.2-py3-none-any.whl (106 kB)
00:34:07 Installing collected packages: markdown
00:34:07 Successfully installed markdown-3.8.2
00:34:07 + pip install reportlab
00:34:07 Collecting reportlab
00:34:07 Using cached reportlab-4.4.2-py3-none-any.whl.metadata (1.8 kB)
00:34:07 Collecting pillow>=9.0.0 (from reportlab)
00:34:07 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:34:08 Collecting charset-normalizer (from reportlab)
00:34:08 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
00:34:08 Using cached reportlab-4.4.2-py3-none-any.whl (2.0 MB)
00:34:08 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
00:34:08 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
00:34:08 Installing collected packages: pillow, charset-normalizer, reportlab
00:34:09
00:34:09 Successfully installed charset-normalizer-3.4.2 pillow-11.3.0 reportlab-4.4.2
00:34:09 + pip install pyarrow
00:34:09 Collecting pyarrow
00:34:09 Using cached pyarrow-21.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.3 kB)
00:34:09 Using cached pyarrow-21.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (42.8 MB)
00:34:09 Installing collected packages: pyarrow
00:34:11 Successfully installed pyarrow-21.0.0
00:34:11 + pip install omego
00:34:11 Collecting omego
00:34:11 Using cached omego-0.7.0-py3-none-any.whl
00:34:11 Collecting future (from omego)
00:34:11 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:34:11 Collecting yaclifw>=0.1.1 (from omego)
00:34:11 Using cached yaclifw-0.2.0-py3-none-any.whl
00:34:11 Collecting six (from yaclifw>=0.1.1->omego)
00:34:11 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:34:11 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:34:11 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:34:11 Installing collected packages: six, future, yaclifw, omego
00:34:12
00:34:12 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:34:12 + pip install tables
00:34:12 Collecting tables
00:34:12 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:34:12 Collecting numpy>=1.20.0 (from tables)
00:34:12 Using cached numpy-2.3.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (62 kB)
00:34:12 Collecting numexpr>=2.6.2 (from tables)
00:34:12 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:34:13 Collecting packaging (from tables)
00:34:13 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
00:34:13 Collecting py-cpuinfo (from tables)
00:34:13 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:34:13 Collecting blosc2>=2.3.0 (from tables)
00:34:13 Using cached blosc2-3.6.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.0 kB)
00:34:13 Collecting typing-extensions>=4.4.0 (from tables)
00:34:13 Using cached typing_extensions-4.14.1-py3-none-any.whl.metadata (3.0 kB)
00:34:13 Collecting ndindex (from blosc2>=2.3.0->tables)
00:34:13 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.6 kB)
00:34:13 Collecting msgpack (from blosc2>=2.3.0->tables)
00:34:13 Using cached msgpack-1.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
00:34:13 Collecting platformdirs (from blosc2>=2.3.0->tables)
00:34:13 Using cached platformdirs-4.3.8-py3-none-any.whl.metadata (12 kB)
00:34:13 Collecting requests (from blosc2>=2.3.0->tables)
00:34:13 Using cached requests-2.32.4-py3-none-any.whl.metadata (4.9 kB)
00:34:13 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.2)
00:34:13 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:34:13 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
00:34:13 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:34:13 Using cached urllib3-2.5.0-py3-none-any.whl.metadata (6.5 kB)
00:34:13 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:34:13 Using cached certifi-2025.7.14-py3-none-any.whl.metadata (2.4 kB)
00:34:13 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:34:13 Using cached blosc2-3.6.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.4 MB)
00:34:13 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (401 kB)
00:34:13 Using cached numpy-2.3.1-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB)
00:34:13 Using cached typing_extensions-4.14.1-py3-none-any.whl (43 kB)
00:34:13 Using cached msgpack-1.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (429 kB)
00:34:13 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (528 kB)
00:34:13 Using cached packaging-25.0-py3-none-any.whl (66 kB)
00:34:13 Using cached platformdirs-4.3.8-py3-none-any.whl (18 kB)
00:34:13 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:34:13 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
00:34:13 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:34:13 Using cached urllib3-2.5.0-py3-none-any.whl (129 kB)
00:34:13 Using cached certifi-2025.7.14-py3-none-any.whl (162 kB)
00:34:13 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:34:17
00:34:17 Successfully installed blosc2-3.6.1 certifi-2025.7.14 idna-3.10 msgpack-1.1.1 ndindex-1.10.0 numexpr-2.11.0 numpy-2.3.1 packaging-25.0 platformdirs-4.3.8 py-cpuinfo-9.0.0 requests-2.32.4 tables-3.10.2 typing-extensions-4.14.1 urllib3-2.5.0
00:34:17 + pip install jinja2
00:34:17 Collecting jinja2
00:34:17 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:34:17 Collecting MarkupSafe>=2.0 (from jinja2)
00:34:17 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
00:34:17 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:34:17 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB)
00:34:17 Installing collected packages: MarkupSafe, jinja2
00:34:17
00:34:17 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6
00:34:17 + pip install ome-zarr
00:34:18 Collecting ome-zarr
00:34:18 Using cached ome_zarr-0.11.1-py3-none-any.whl.metadata (2.9 kB)
00:34:18 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr) (2.3.1)
00:34:18 Collecting dask (from ome-zarr)
00:34:18 Using cached dask-2025.7.0-py3-none-any.whl.metadata (3.8 kB)
00:34:18 Collecting zarr<3,>=2.8.1 (from ome-zarr)
00:34:18 Using cached zarr-2.18.7-py3-none-any.whl.metadata (5.8 kB)
00:34:18 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr)
00:34:18 Using cached fsspec-2025.7.0-py3-none-any.whl.metadata (12 kB)
00:34:19 Collecting aiohttp<4 (from ome-zarr)
00:34:19 Using cached aiohttp-3.12.14-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.6 kB)
00:34:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr) (2.32.4)
00:34:19 Collecting scikit-image (from ome-zarr)
00:34:19 Using cached scikit_image-0.25.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (14 kB)
00:34:19 Collecting toolz (from ome-zarr)
00:34:19 Using cached toolz-1.0.0-py3-none-any.whl.metadata (5.1 kB)
00:34:19 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp<4->ome-zarr)
00:34:19 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:34:19 Collecting aiosignal>=1.4.0 (from aiohttp<4->ome-zarr)
00:34:19 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:34:19 Collecting attrs>=17.3.0 (from aiohttp<4->ome-zarr)
00:34:19 Using cached attrs-25.3.0-py3-none-any.whl.metadata (10 kB)
00:34:19 Collecting frozenlist>=1.1.1 (from aiohttp<4->ome-zarr)
00:34:19 Using cached frozenlist-1.7.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (18 kB)
00:34:19 Collecting multidict<7.0,>=4.5 (from aiohttp<4->ome-zarr)
00:34:19 Using cached multidict-6.6.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:34:19 Collecting propcache>=0.2.0 (from aiohttp<4->ome-zarr)
00:34:19 Using cached propcache-0.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (12 kB)
00:34:19 Collecting yarl<2.0,>=1.17.0 (from aiohttp<4->ome-zarr)
00:34:19 Using cached yarl-1.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (73 kB)
00:34:19 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp<4->ome-zarr) (3.10)
00:34:20 Collecting asciitree (from zarr<3,>=2.8.1->ome-zarr)
00:34:20 Using cached asciitree-0.3.3-py3-none-any.whl
00:34:20 Collecting fasteners (from zarr<3,>=2.8.1->ome-zarr)
00:34:20 Using cached fasteners-0.19-py3-none-any.whl.metadata (4.9 kB)
00:34:20 Collecting numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0 (from zarr<3,>=2.8.1->ome-zarr)
00:34:20 Using cached numcodecs-0.15.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.9 kB)
00:34:20 Collecting deprecated (from numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr)
00:34:20 Using cached Deprecated-1.2.18-py2.py3-none-any.whl.metadata (5.7 kB)
00:34:20 Requirement already satisfied: typing-extensions>=4.2 in ./.venv3/lib64/python3.11/site-packages (from aiosignal>=1.4.0->aiohttp<4->ome-zarr) (4.14.1)
00:34:20 Collecting s3fs (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr)
00:34:20 Using cached s3fs-2025.7.0-py3-none-any.whl.metadata (1.4 kB)
00:34:20 Collecting click>=8.1 (from dask->ome-zarr)
00:34:20 Using cached click-8.2.1-py3-none-any.whl.metadata (2.5 kB)
00:34:20 Collecting cloudpickle>=3.0.0 (from dask->ome-zarr)
00:34:20 Using cached cloudpickle-3.1.1-py3-none-any.whl.metadata (7.1 kB)
00:34:20 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask->ome-zarr) (25.0)
00:34:20 Collecting partd>=1.4.0 (from dask->ome-zarr)
00:34:20 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:34:20 Collecting pyyaml>=5.3.1 (from dask->ome-zarr)
00:34:20 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
00:34:20 Collecting importlib_metadata>=4.13.0 (from dask->ome-zarr)
00:34:20 Using cached importlib_metadata-8.7.0-py3-none-any.whl.metadata (4.8 kB)
00:34:20 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask->ome-zarr)
00:34:20 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:34:20 Collecting locket (from partd>=1.4.0->dask->ome-zarr)
00:34:20 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:34:20 Collecting wrapt<2,>=1.10 (from deprecated->numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr)
00:34:20 Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB)
00:34:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr) (3.4.2)
00:34:20 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr) (2.5.0)
00:34:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr) (2025.7.14)
00:34:20 Collecting aiobotocore<3.0.0,>=2.5.4 (from s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr)
00:34:20 Using cached aiobotocore-2.23.1-py3-none-any.whl.metadata (25 kB)
00:34:20 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr)
00:34:20 Using cached aioitertools-0.12.0-py3-none-any.whl.metadata (3.8 kB)
00:34:21 Collecting botocore<1.38.47,>=1.38.40 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr)
00:34:21 Using cached botocore-1.38.46-py3-none-any.whl.metadata (5.7 kB)
00:34:21 Collecting python-dateutil<3.0.0,>=2.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr)
00:34:21 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:34:21 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr)
00:34:21 Using cached jmespath-1.0.1-py3-none-any.whl.metadata (7.6 kB)
00:34:21 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<3.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr) (1.17.0)
00:34:21 Collecting scipy>=1.11.4 (from scikit-image->ome-zarr)
00:34:21 Using cached scipy-1.16.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (61 kB)
00:34:21 Collecting networkx>=3.0 (from scikit-image->ome-zarr)
00:34:21 Using cached networkx-3.5-py3-none-any.whl.metadata (6.3 kB)
00:34:21 Requirement already satisfied: pillow>=10.1 in ./.venv3/lib64/python3.11/site-packages (from scikit-image->ome-zarr) (11.3.0)
00:34:21 Collecting imageio!=2.35.0,>=2.33 (from scikit-image->ome-zarr)
00:34:21 Using cached imageio-2.37.0-py3-none-any.whl.metadata (5.2 kB)
00:34:21 Collecting tifffile>=2022.8.12 (from scikit-image->ome-zarr)
00:34:21 Using cached tifffile-2025.6.11-py3-none-any.whl.metadata (32 kB)
00:34:21 Collecting lazy-loader>=0.4 (from scikit-image->ome-zarr)
00:34:21 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
00:34:21 Using cached ome_zarr-0.11.1-py3-none-any.whl (40 kB)
00:34:21 Using cached aiohttp-3.12.14-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.7 MB)
00:34:21 Using cached multidict-6.6.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:34:21 Using cached yarl-1.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (348 kB)
00:34:21 Using cached zarr-2.18.7-py3-none-any.whl (211 kB)
00:34:21 Using cached numcodecs-0.15.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.9 MB)
00:34:21 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:34:21 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:34:21 Using cached attrs-25.3.0-py3-none-any.whl (63 kB)
00:34:21 Using cached frozenlist-1.7.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (235 kB)
00:34:21 Using cached fsspec-2025.7.0-py3-none-any.whl (199 kB)
00:34:21 Using cached propcache-0.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (213 kB)
00:34:21 Using cached dask-2025.7.0-py3-none-any.whl (1.5 MB)
00:34:21 Using cached click-8.2.1-py3-none-any.whl (102 kB)
00:34:21 Using cached cloudpickle-3.1.1-py3-none-any.whl (20 kB)
00:34:21 Using cached importlib_metadata-8.7.0-py3-none-any.whl (27 kB)
00:34:21 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:34:21 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:34:21 Using cached toolz-1.0.0-py3-none-any.whl (56 kB)
00:34:21 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:34:21 Using cached Deprecated-1.2.18-py2.py3-none-any.whl (10.0 kB)
00:34:21 Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (83 kB)
00:34:21 Using cached fasteners-0.19-py3-none-any.whl (18 kB)
00:34:21 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:34:21 Using cached s3fs-2025.7.0-py3-none-any.whl (30 kB)
00:34:21 Using cached aiobotocore-2.23.1-py3-none-any.whl (84 kB)
00:34:21 Using cached aioitertools-0.12.0-py3-none-any.whl (24 kB)
00:34:21 Using cached botocore-1.38.46-py3-none-any.whl (13.7 MB)
00:34:21 Using cached jmespath-1.0.1-py3-none-any.whl (20 kB)
00:34:21 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:34:21 Using cached scikit_image-0.25.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (14.8 MB)
00:34:21 Using cached imageio-2.37.0-py3-none-any.whl (315 kB)
00:34:21 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:34:21 Using cached networkx-3.5-py3-none-any.whl (2.0 MB)
00:34:21 Using cached scipy-1.16.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (35.3 MB)
00:34:21 Using cached tifffile-2025.6.11-py3-none-any.whl (230 kB)
00:34:21 Installing collected packages: asciitree, zipp, wrapt, toolz, tifffile, scipy, pyyaml, python-dateutil, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, fsspec, frozenlist, fasteners, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, importlib_metadata, deprecated, botocore, aiosignal, numcodecs, dask, aiohttp, zarr, aiobotocore, s3fs, ome-zarr
00:34:31
00:34:31 Successfully installed aiobotocore-2.23.1 aiohappyeyeballs-2.6.1 aiohttp-3.12.14 aioitertools-0.12.0 aiosignal-1.4.0 asciitree-0.3.3 attrs-25.3.0 botocore-1.38.46 click-8.2.1 cloudpickle-3.1.1 dask-2025.7.0 deprecated-1.2.18 fasteners-0.19 frozenlist-1.7.0 fsspec-2025.7.0 imageio-2.37.0 importlib_metadata-8.7.0 jmespath-1.0.1 lazy-loader-0.4 locket-1.0.0 multidict-6.6.3 networkx-3.5 numcodecs-0.15.1 ome-zarr-0.11.1 partd-1.4.2 propcache-0.3.2 python-dateutil-2.9.0.post0 pyyaml-6.0.2 s3fs-2025.7.0 scikit-image-0.25.2 scipy-1.16.0 tifffile-2025.6.11 toolz-1.0.0 wrapt-1.17.2 yarl-1.20.1 zarr-2.18.7 zipp-3.23.0
00:34:32 + pip install ome-rois
00:34:32 ERROR: Could not find a version that satisfies the requirement ome-rois (from versions: none)
00:34:32 ERROR: No matching distribution found for ome-rois
00:34:32 Build step 'Execute shell' marked build as failure
00:34:32 Finished: FAILURE
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