![[Jenkins]](/jenkins/static/9bac06d9/images/svgs/logo.svg){kind=logo}
Started by user devspace [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-zarr-pixel-buffer-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.39.2' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-zarr-pixel-buffer-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.39.2' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision 7b25b245f0dd46ea24620fee38ec471e330d9afd (refs/remotes/origin/master) Commit message: "Bump version to 0.5.1-SNAPSHOT" > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-zarr-pixel-buffer-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-zarr-pixel-buffer.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-zarr-pixel-buffer.git > git --version # timeout=10 > git --version # 'git version 2.43.5' > git fetch --tags --force --progress -- https://github.com/ome/omero-zarr-pixel-buffer.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 7b25b245f0dd46ea24620fee38ec471e330d9afd # timeout=10 > git rev-list --no-walk 7b25b245f0dd46ea24620fee38ec471e330d9afd # timeout=10 Cleaning workspace [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 489 [Pipeline] sh + pushd build ~/workspace/OMERO-zarr-pixel-buffer-push/build ~/workspace/OMERO-zarr-pixel-buffer-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 + popd ~/workspace/OMERO-zarr-pixel-buffer-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.1.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.1.1 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached PyGithub-2.6.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel.yaml-0.18.14-py3-none-any.whl.metadata (24 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.4-py3-none-any.whl.metadata (4.9 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.14.1-py3-none-any.whl.metadata (3.0 kB) Collecting Deprecated (from PyGithub>=1.54->scc) Using cached Deprecated-1.2.18-py2.py3-none-any.whl.metadata (5.7 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-45.0.5-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=1.14 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-1.17.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB) Collecting pycparser (from cffi>=1.14->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2025.7.14-py3-none-any.whl.metadata (2.4 kB) Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc) Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB) Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) Using cached ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.7 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached PyGithub-2.6.1-py3-none-any.whl (410 kB) Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB) Using cached cryptography-45.0.5-cp311-abi3-manylinux_2_34_x86_64.whl (4.5 MB) Using cached cffi-1.17.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (467 kB) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) Using cached requests-2.32.4-py3-none-any.whl (64 kB) Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB) Using cached idna-3.10-py3-none-any.whl (70 kB) Using cached certifi-2025.7.14-py3-none-any.whl (162 kB) Using cached typing_extensions-4.14.1-py3-none-any.whl (43 kB) Using cached Deprecated-1.2.18-py2.py3-none-any.whl (10.0 kB) Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (83 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-2.22-py3-none-any.whl (117 kB) Using cached ruamel.yaml-0.18.14-py3-none-any.whl (118 kB) Using cached ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (739 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc Successfully installed Deprecated-1.2.18 PyGithub-2.6.1 PyYAML-6.0.2 certifi-2025.7.14 cffi-1.17.1 charset_normalizer-3.4.2 cryptography-45.0.5 future-1.0.0 idna-3.10 pycparser-2.22 pyjwt-2.10.1 pynacl-1.5.0 requests-2.32.4 ruamel.yaml-0.18.14 ruamel.yaml.clib-0.2.12 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.14.1 urllib3-1.26.20 wrapt-1.17.2 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-zarr-pixel-buffer.git + BASE_REPO=omero-zarr-pixel-buffer.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2025-07-15 12:00:36,515 [ scc.config] DEBUG Found github.token 2025-07-15 12:00:36,516 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-07-15 12:00:36,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-07-15 12:00:36,985 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-07-15 12:00:37,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-07-15 12:00:37,421 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-07-15 12:00:37,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-07-15 12:00:37,599 [ scc.gh] DEBUG 4998 remaining from 5000 (Reset at 13:07 2025-07-15 12:00:37,600 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-07-15 12:00:37,603 [ scc.git] DEBUG Check current status 2025-07-15 12:00:37,603 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-07-15 12:00:37,605 [ scc.git] DEBUG 7b25b24 Bump version to 0.5.1-SNAPSHOT 2025-07-15 12:00:37,606 [ scc.git] DEBUG Calling 'git submodule status' 2025-07-15 12:00:37,649 [ scc.config] DEBUG Found remote.origin.url 2025-07-15 12:00:37,851 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-07-15 12:00:38,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer HTTP/1.1" 200 None 2025-07-15 12:00:38,455 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-07-15 12:00:38,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-07-15 12:00:38,984 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-07-15 12:00:39,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-07-15 12:00:39,422 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-07-15 12:00:39,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-07-15 12:00:39,899 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-07-15 12:00:40,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-07-15 12:00:40,096 [ scc.git] DEBUG Resetting... 2025-07-15 12:00:40,096 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-07-15 12:00:40,100 [ scc.git] DEBUG HEAD is now at 7b25b24 Bump version to 0.5.1-SNAPSHOT 2025-07-15 12:00:40,100 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-07-15 12:00:40,140 [ scc.git] DEBUG Check current status 2025-07-15 12:00:40,141 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-07-15 12:00:40,143 [ scc.git] DEBUG 7b25b24 Bump version to 0.5.1-SNAPSHOT 2025-07-15 12:00:40,143 [ scc.git] DEBUG Calling 'git submodule status' 2025-07-15 12:00:40,181 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-07-15 12:00:40,181 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-07-15 12:00:40,181 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-07-15 12:00:40,181 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-07-15 12:00:40,181 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-07-15 12:00:40,181 [ scc.repo] DEBUG ## PRs found: 2025-07-15 12:00:40,347 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-07-15 12:00:40,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/pulls HTTP/1.1" 200 None 2025-07-15 12:00:40,895 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-07-15 12:00:41,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/issues/5 HTTP/1.1" 200 None 2025-07-15 12:00:41,112 [ scc.repo] DEBUG ## Branches found: 2025-07-15 12:00:41,112 [ scc.git] DEBUG Get sha1 of %s 2025-07-15 12:00:41,112 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-07-15 12:00:41,115 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-07-15 12:00:41,117 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-07-15 12:00:41,117 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-07-15 12:00:41,120 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-07-15 12:00:41,123 [ scc.git] DEBUG Already up to date. 2025-07-15 12:00:41,124 [ scc.git] DEBUG ## Unique users: [] 2025-07-15 12:00:41,124 [ scc.git] DEBUG Get sha1 of %s 2025-07-15 12:00:41,124 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-07-15 12:00:41,126 [ scc.git] DEBUG Calling 'git submodule update' 2025-07-15 12:00:41,165 [ scc.git] DEBUG Get sha1 of %s 2025-07-15 12:00:41,165 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-07-15 12:00:41,167 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-07-15 12:00:41,170 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f6f44aeea10> has local changes 2025-07-15 12:00:41,171 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Snone Repository: ome/omero-zarr-pixel-buffer Excluded PRs: - PR 5 dominikl 'Add script to merge feature branches' (stage: draft) Already up to date. Generated by OMERO-zarr-pixel-buffer-push#3 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-zarr-pixel-buffer-push/3/)' 2025-07-15 12:00:41,174 [ scc.git] DEBUG HEAD detached at 7b25b24 2025-07-15 12:00:41,174 [ scc.git] DEBUG Untracked files: 2025-07-15 12:00:41,174 [ scc.git] DEBUG (use "git add <file>..." to include in what will be committed) 2025-07-15 12:00:41,174 [ scc.git] DEBUG build/ 2025-07-15 12:00:41,174 [ scc.git] DEBUG 2025-07-15 12:00:41,174 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-07-15 12:00:41,174 [ scc.git] DEBUG nothing added to commit but untracked files present (use "git add" to track) 2025-07-15 12:00:41,174 [ scc.git] DEBUG Calling 'git remote' Traceback (most recent call last): File "/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv/lib64/python3.11/site-packages/scc/main.py", line 64, in entry_point main("scc", items=[ File "/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv/lib64/python3.11/site-packages/yaclifw/framework.py", line 188, in main ns.func(ns) File "/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv/lib64/python3.11/site-packages/scc/git.py", line 3332, in __call__ self.merge(args, self.main_repo) File "/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv/lib64/python3.11/site-packages/scc/git.py", line 3357, in merge updated, merge_msg = main_repo.rmerge( ^^^^^^^^^^^^^^^^^ File "/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv/lib64/python3.11/site-packages/scc/git.py", line 1861, in rmerge summary_update = self.summary_commit( ^^^^^^^^^^^^^^^^^^^^ File "/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv/lib64/python3.11/site-packages/scc/git.py", line 1924, in summary_commit self.call("git", "commit", "-a", "-n", "-m", commit_message) File "/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv/lib64/python3.11/site-packages/scc/git.py", line 1162, in call return self.wrap_call(self.debugWrap, *command, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv/lib64/python3.11/site-packages/scc/git.py", line 1187, in wrap_call raise Exception("rc=%s" % rc) Exception: rc=1 [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE