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Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/plexus/plexus-cipher/1.7/plexus-cipher-1.7.jar (13 kB at 202 kB/s)
#14 457.7 Progress (4): 1.0/2.2 MB | 251 kB | 16 kB | 216 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/plugins/nexus-restlet1x-model/2.14.3-02/nexus-restlet1x-model-2.14.3-02.jar
#14 457.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-common/1.6.8/nexus-common-1.6.8.jar (16 kB at 238 kB/s)
#14 457.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/3.0.4/maven-model-3.0.4.jar
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#14 457.7 Progress (2): 1.3/2.2 MB | 216 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-api/1.7.7/slf4j-api-1.7.7.jar
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#14 457.7 Downloading from central: https://repo.maven.apache.org/maven2/com/intellij/annotations/9.0.4/annotations-9.0.4.jar
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#14 457.8 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/plugins/nexus-restlet1x-model/2.14.3-02/nexus-restlet1x-model-2.14.3-02.jar (163 kB at 1.2 MB/s)
#14 457.8 Downloading from central: https://repo.maven.apache.org/maven2/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.jar
#14 457.8 Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/14.0.1/guava-14.0.1.jar (2.2 MB at 16 MB/s)
#14 457.8 Downloading from central: https://repo.maven.apache.org/maven2/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.jar
#14 457.8 Downloaded from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-api/1.7.7/slf4j-api-1.7.7.jar (29 kB at 209 kB/s)
#14 457.8 Downloading from central: https://repo.maven.apache.org/maven2/joda-time/joda-time/2.2/joda-time-2.2.jar
#14 457.8 Downloaded from central: https://repo.maven.apache.org/maven2/com/intellij/annotations/9.0.4/annotations-9.0.4.jar (10.0 kB at 70 kB/s)
#14 457.8 Downloading from central: https://repo.maven.apache.org/maven2/commons-beanutils/commons-beanutils-core/1.8.3/commons-beanutils-core-1.8.3.jar
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#14 457.9 Progress (3): 532 kB | 574 kB | 20 kB
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#14 457.9 Downloading from central: https://repo.maven.apache.org/maven2/com/sun/jersey/jersey-core/1.17.1/jersey-core-1.17.1.jar
#14 457.9 Progress (3): 574 kB | 20 kB | 3.7/11 kB
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#14 457.9 Downloading from central: https://repo.maven.apache.org/maven2/javax/validation/validation-api/1.1.0.Final/validation-api-1.1.0.Final.jar
#14 457.9 Progress (3): 20 kB | 11 kB | 4.1/46 kB
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#14 457.9 Downloading from central: https://repo.maven.apache.org/maven2/com/sun/jersey/jersey-client/1.17.1/jersey-client-1.17.1.jar
#14 457.9 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/siesta/siesta-common/1.7/siesta-common-1.7.jar (11 kB at 41 kB/s)
#14 457.9 Downloading from central: https://repo.maven.apache.org/maven2/com/sun/jersey/contribs/jersey-apache-client4/1.17.1/jersey-apache-client4-1.17.1.jar
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#14 457.9 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/siesta/siesta-jackson/1.7/siesta-jackson-1.7.jar
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#14 457.9 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.3.1/jackson-annotations-2.3.1.jar
#14 458.0 Downloaded from central: https://repo.maven.apache.org/maven2/com/sun/jersey/jersey-core/1.17.1/jersey-core-1.17.1.jar (467 kB at 1.5 MB/s)
#14 458.0 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-core/2.3.1/jackson-core-2.3.1.jar
#14 458.0 Progress (3): 16 kB | 131 kB | 4.1/6.3 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/sun/jersey/contribs/jersey-apache-client4/1.17.1/jersey-apache-client4-1.17.1.jar (16 kB at 50 kB/s)
#14 458.0 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.3.1/jackson-databind-2.3.1.jar
#14 458.0 Downloaded from central: https://repo.maven.apache.org/maven2/com/sun/jersey/jersey-client/1.17.1/jersey-client-1.17.1.jar (131 kB at 403 kB/s)
#14 458.0 Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/jaxrs/jackson-jaxrs-json-provider/2.3.1/jackson-jaxrs-jso
#14 458.0 [output clipped, log limit 2MiB reached]
#14 580.2 SLF4J: No SLF4J providers were found.
#14 580.2 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 580.2 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 588.7s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.2s
#16 [12/13] RUN ant jars tools
#16 0.667 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.038 [echo] isSnapshot = true
#16 3.147
#16 3.147 copy-jars:
#16 3.147
#16 3.147 deps-formats-api:
#16 3.228 [echo] isSnapshot = true
#16 3.284
#16 3.284 install-pom:
#16 3.461 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 3.471 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 3.475 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 3.477
#16 3.477 jar-formats-api:
#16 3.585 [echo] isSnapshot = true
#16 3.770
#16 3.770 init-title:
#16 3.771 [echo] ----------=========== formats-api ===========----------
#16 3.771
#16 3.771 init-timestamp:
#16 3.776
#16 3.776 init:
#16 3.777
#16 3.777 copy-resources:
#16 3.777 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.791 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.793
#16 3.793 compile:
#16 3.969 [resolver:resolve] Resolving artifacts
#16 3.996 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.250 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 4.851 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.851 [javac] import loci.common.ReflectedUniverse;
#16 4.851 [javac] ^
#16 5.152 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.152 [javac] int currentIndex = r.getCoreIndex();
#16 5.152 [javac] ^
#16 5.152 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.152 [javac] r.setCoreIndex(coreIndex);
#16 5.152 [javac] ^
#16 5.152 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.152 [javac] r.setCoreIndex(currentIndex);
#16 5.152 [javac] ^
#16 5.252 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.252 [javac] public void setCoreIndex(int no) {
#16 5.253 [javac] ^
#16 5.253 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.253 [javac] public int getCoreIndex() {
#16 5.253 [javac] ^
#16 5.253 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.253 [javac] public int coreIndexToSeries(int index)
#16 5.253 [javac] ^
#16 5.253 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.253 [javac] public int seriesToCoreIndex(int series)
#16 5.253 [javac] ^
#16 5.253 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.253 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.253 [javac] ^
#16 5.354 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.354 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 5.354 [javac] ^
#16 5.354 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.354 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 5.354 [javac] ^
#16 5.354 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.354 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 5.354 [javac] ^
#16 5.354 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.354 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 5.354 [javac] ^
#16 5.455 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.455 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 5.455 [javac] ^
#16 5.455 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.455 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 5.455 [javac] ^
#16 5.555 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.555 [javac] public void setCoreIndex(int no) {
#16 5.556 [javac] ^
#16 5.556 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.556 [javac] public int getCoreIndex() {
#16 5.556 [javac] ^
#16 5.556 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.556 [javac] public int coreIndexToSeries(int index) {
#16 5.556 [javac] ^
#16 5.556 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.556 [javac] public int seriesToCoreIndex(int series) {
#16 5.556 [javac] ^
#16 5.556 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.556 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.556 [javac] ^
#16 5.556 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.556 [javac] return getReader().getCoreMetadataList();
#16 5.556 [javac] ^
#16 5.557 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.557 [javac] return getReader().getCoreIndex();
#16 5.557 [javac] ^
#16 5.557 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.557 [javac] getReader().setCoreIndex(no);
#16 5.557 [javac] ^
#16 5.557 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.557 [javac] return getReader().seriesToCoreIndex(series);
#16 5.557 [javac] ^
#16 5.557 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.557 [javac] return getReader().coreIndexToSeries(index);
#16 5.557 [javac] ^
#16 5.557 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.557 [javac] public void setCoreIndex(int no) {
#16 5.557 [javac] ^
#16 5.557 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.557 [javac] public int getCoreIndex() {
#16 5.557 [javac] ^
#16 5.557 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.557 [javac] public int coreIndexToSeries(int index) {
#16 5.558 [javac] ^
#16 5.558 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.558 [javac] public int seriesToCoreIndex(int series) {
#16 5.558 [javac] ^
#16 5.558 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.558 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.558 [javac] ^
#16 5.558 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.558 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 5.558 [javac] ^
#16 5.558 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.558 [javac] return reader.getCoreIndex();
#16 5.558 [javac] ^
#16 5.558 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.558 [javac] reader.setCoreIndex(no);
#16 5.558 [javac] ^
#16 5.558 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.558 [javac] return reader.seriesToCoreIndex(series);
#16 5.558 [javac] ^
#16 5.558 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.558 [javac] return reader.coreIndexToSeries(index);
#16 5.559 [javac] ^
#16 5.759 [javac] Note: Some input files use unchecked or unsafe operations.
#16 5.759 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 5.759 [javac] 36 warnings
#16 5.786
#16 5.786 formats-api.jar:
#16 5.786 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 5.809 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 5.840 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 5.844 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 5.847 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 5.849 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 5.851 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 5.853
#16 5.853 deps-turbojpeg:
#16 5.853
#16 5.853 jar-turbojpeg:
#16 5.954 [echo] isSnapshot = true
#16 6.120
#16 6.120 init-title:
#16 6.120 [echo] ----------=========== turbojpeg ===========----------
#16 6.120
#16 6.120 init-timestamp:
#16 6.121
#16 6.121 init:
#16 6.121
#16 6.121 copy-resources:
#16 6.121 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.123
#16 6.123 compile:
#16 6.133 [resolver:resolve] Resolving artifacts
#16 6.136 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.338 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 6.939 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 6.939 [javac] protected void finalize() throws Throwable {
#16 6.939 [javac] ^
#16 6.939 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 6.939 [javac] super.finalize();
#16 6.939 [javac] ^
#16 6.939 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 6.939 [javac] protected void finalize() throws Throwable {
#16 6.939 [javac] ^
#16 6.939 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 6.939 [javac] super.finalize();
#16 6.939 [javac] ^
#16 7.017 [javac] 5 warnings
#16 7.018
#16 7.018 jar:
#16 7.022 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 7.205 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 7.212 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 7.215 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 7.217 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 7.220 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 7.221
#16 7.221 deps-formats-bsd:
#16 7.221
#16 7.221 jar-formats-bsd:
#16 7.315 [echo] isSnapshot = true
#16 7.470
#16 7.470 init-title:
#16 7.471 [echo] ----------=========== formats-bsd ===========----------
#16 7.471
#16 7.471 init-timestamp:
#16 7.471
#16 7.471 init:
#16 7.471
#16 7.471 copy-resources:
#16 7.471 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.474 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.475
#16 7.475 compile:
#16 7.688 [resolver:resolve] Resolving artifacts
#16 7.713 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.921 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 9.023 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.023 [javac] import loci.common.ReflectedUniverse;
#16 9.023 [javac] ^
#16 9.323 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.323 [javac] core.size() != reader.getCoreMetadataList().size())
#16 9.323 [javac] ^
#16 9.323 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.323 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 9.323 [javac] ^
#16 9.323 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.323 [javac] int n = reader.getCoreMetadataList().size();
#16 9.323 [javac] ^
#16 9.323 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.324 [javac] reader.setCoreIndex(coreIndex);
#16 9.324 [javac] ^
#16 9.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.324 [javac] int n = reader.getCoreMetadataList().size();
#16 9.324 [javac] ^
#16 9.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.324 [javac] int n = reader.getCoreMetadataList().size();
#16 9.324 [javac] ^
#16 9.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 9.324 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 9.324 [javac] ^
#16 9.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.324 [javac] int n = reader.getCoreMetadataList().size();
#16 9.324 [javac] ^
#16 9.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 9.324 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 9.324 [javac] ^
#16 9.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.324 [javac] int n = reader.getCoreMetadataList().size();
#16 9.324 [javac] ^
#16 9.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.324 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 9.324 [javac] ^
#16 9.324 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 9.324 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 9.325 [javac] ^
#16 9.325 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 9.325 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 9.325 [javac] ^
#16 9.425 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.425 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 9.425 [javac] ^
#16 9.425 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.425 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 9.425 [javac] ^
#16 9.425 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.425 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 9.425 [javac] ^
#16 9.425 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.425 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 9.425 [javac] ^
#16 9.425 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.425 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 9.425 [javac] ^
#16 9.425 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.426 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 9.426 [javac] ^
#16 9.526 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.526 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 9.526 [javac] ^
#16 9.626 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.626 [javac] BitWriter out = new BitWriter();
#16 9.626 [javac] ^
#16 9.626 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.627 [javac] BitWriter out = new BitWriter();
#16 9.627 [javac] ^
#16 9.727 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [deprecation] Double(String) in Double has been deprecated
#16 9.727 [javac] return new Double(v);
#16 9.727 [javac] ^
#16 10.33 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2129: warning: [deprecation] Double(String) in Double has been deprecated
#16 10.33 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 10.33 [javac] ^
#16 10.33 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2136: warning: [deprecation] Double(String) in Double has been deprecated
#16 10.33 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 10.33 [javac] ^
#16 10.33 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2143: warning: [deprecation] Double(double) in Double has been deprecated
#16 10.33 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 10.33 [javac] ^
#16 10.43 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 10.43 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 10.43 [javac] ^
#16 10.63 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.63 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 10.63 [javac] ^
#16 10.63 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 10.63 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 10.63 [javac] ^
#16 10.73 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [deprecation] Double(double) in Double has been deprecated
#16 10.73 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#16 10.73 [javac] ^
#16 10.73 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.73 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 10.73 [javac] ^
#16 10.73 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.73 [javac] protected ReflectedUniverse r;
#16 10.73 [javac] ^
#16 10.73 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.73 [javac] r = new ReflectedUniverse();
#16 10.73 [javac] ^
#16 10.83 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 10.83 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 10.83 [javac] ^
#16 10.83 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 10.83 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 10.83 [javac] ^
#16 10.83 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 10.83 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 10.83 [javac] ^
#16 10.83 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 10.83 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 10.83 [javac] ^
#16 10.83 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 10.83 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 10.83 [javac] ^
#16 10.83 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 10.83 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 10.83 [javac] ^
#16 10.83 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 10.83 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 10.83 [javac] ^
#16 10.83 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 10.83 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 10.83 [javac] ^
#16 10.83 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 10.83 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 10.83 [javac] ^
#16 10.93 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 10.93 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 10.93 [javac] ^
#16 10.93 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [deprecation] Long(long) in Long has been deprecated
#16 10.93 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 10.93 [javac] ^
#16 10.93 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Integer(int) in Integer has been deprecated
#16 10.93 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 10.93 [javac] ^
#16 10.93 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [deprecation] Long(long) in Long has been deprecated
#16 10.93 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 10.93 [javac] ^
#16 10.93 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.93 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.93 [javac] ^
#16 11.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [deprecation] Double(double) in Double has been deprecated
#16 11.03 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 11.03 [javac] ^
#16 11.03 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [deprecation] Double(double) in Double has been deprecated
#16 11.03 [javac] result[i] = new Double(readNumber().doubleValue());
#16 11.03 [javac] ^
#16 11.03 [javac] Note: Some input files use unchecked or unsafe operations.
#16 11.03 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 11.03 [javac] 51 warnings
#16 11.08
#16 11.08 formats-bsd.jar:
#16 11.09 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 11.19 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 11.20 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 11.20 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 11.20 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 11.20 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 11.20
#16 11.20 deps-formats-gpl:
#16 11.20
#16 11.20 jar-formats-gpl:
#16 11.30 [echo] isSnapshot = true
#16 11.45
#16 11.45 init-title:
#16 11.45 [echo] ----------=========== formats-gpl ===========----------
#16 11.45
#16 11.45 init-timestamp:
#16 11.45
#16 11.45 init:
#16 11.45
#16 11.45 copy-resources:
#16 11.45 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.45 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.45
#16 11.45 compile:
#16 11.87 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 12.32 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 12.70 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 12.71 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 12.96 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 13.08 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 13.10 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 13.34 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 13.46 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 13.50 [resolver:resolve] Resolving artifacts
#16 13.51 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 13.51 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 13.81 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 13.81 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 14.16 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 14.17 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 14.18 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 14.49 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 15.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.59 [javac] import loci.formats.codec.BitWriter;
#16 15.59 [javac] ^
#16 15.69 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.69 [javac] import loci.formats.codec.BitWriter;
#16 15.69 [javac] ^
#16 17.49 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 17.49 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 17.49 [javac] ^
#16 17.49 [javac] cast to Object for a varargs call
#16 17.49 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 17.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.59 [javac] BitWriter bits = null;
#16 17.59 [javac] ^
#16 17.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 17.59 [javac] bits = new BitWriter(planes[index].length / 8);
#16 17.59 [javac] ^
#16 17.79 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.79 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 17.79 [javac] ^
#16 18.19 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#16 18.19 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#16 18.19 [javac] ^
#16 18.19 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#16 18.19 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#16 18.19 [javac] ^
#16 18.19 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 18.19 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 18.19 [javac] ^
#16 18.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 18.20 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 18.20 [javac] ^
#16 18.50 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 18.50 [javac] Variable variable = group.findVariable(variableName);
#16 18.50 [javac] ^
#16 18.50 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 18.50 [javac] Variable variable = group.findVariable(variableName);
#16 18.50 [javac] ^
#16 18.50 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 18.50 [javac] List<Attribute> attributes = variable.getAttributes();
#16 18.50 [javac] ^
#16 18.50 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 18.50 [javac] String groupName = group.getName();
#16 18.50 [javac] ^
#16 18.50 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 18.50 [javac] List<Attribute> attributes = group.getAttributes();
#16 18.50 [javac] ^
#16 18.50 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 18.50 [javac] String variableName = variable.getName();
#16 18.50 [javac] ^
#16 18.50 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 18.50 [javac] Group nextParent = parent.findGroup(token);
#16 18.50 [javac] ^
#16 18.50 [javac] Note: Some input files use unchecked or unsafe operations.
#16 18.50 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.50 [javac] 18 warnings
#16 18.50
#16 18.50 formats-gpl.jar:
#16 18.51 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 18.65 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 18.65 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 18.65 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 18.65 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 18.66 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 18.66
#16 18.66 deps-bio-formats-plugins:
#16 18.66
#16 18.66 jar-bio-formats-plugins:
#16 18.75 [echo] isSnapshot = true
#16 18.90
#16 18.90 init-title:
#16 18.90 [echo] ----------=========== bio-formats_plugins ===========----------
#16 18.90
#16 18.90 init-timestamp:
#16 18.90
#16 18.90 init:
#16 18.90
#16 18.90 copy-resources:
#16 18.90 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.90 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.90
#16 18.90 compile:
#16 19.15 [resolver:resolve] Resolving artifacts
#16 19.16 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 19.47 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 20.17 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.17 [javac] import loci.common.ReflectedUniverse;
#16 20.17 [javac] ^
#16 20.17 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.17 [javac] import loci.common.ReflectedUniverse;
#16 20.17 [javac] ^
#16 20.57 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 20.57 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 20.57 [javac] ^
#16 20.67 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.67 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 20.67 [javac] ^
#16 20.67 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.67 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 20.67 [javac] ^
#16 20.77 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.77 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 20.77 [javac] ^
#16 20.77 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 20.77 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 20.77 [javac] ^
#16 21.17 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 21.17 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 21.17 [javac] 8 warnings
#16 21.18
#16 21.18 bio-formats-plugins.jar:
#16 21.18 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 21.21 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 21.21 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 21.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 21.22 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 21.22 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 21.22
#16 21.22 deps-bio-formats-tools:
#16 21.22
#16 21.22 jar-bio-formats-tools:
#16 21.31 [echo] isSnapshot = true
#16 21.45
#16 21.45 init-title:
#16 21.45 [echo] ----------=========== bio-formats-tools ===========----------
#16 21.45
#16 21.45 init-timestamp:
#16 21.45
#16 21.45 init:
#16 21.45
#16 21.45 copy-resources:
#16 21.46 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 21.46
#16 21.46 compile:
#16 21.70 [resolver:resolve] Resolving artifacts
#16 21.71 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 22.01 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 23.01 [javac] 1 warning
#16 23.01
#16 23.01 bio-formats-tools.jar:
#16 23.01 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 23.02 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 23.02 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 23.02 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 23.03 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 23.03 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 23.03
#16 23.03 deps-tests:
#16 23.03
#16 23.03 jar-tests:
#16 23.12 [echo] isSnapshot = true
#16 23.27
#16 23.27 init-title:
#16 23.27 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 23.27
#16 23.27 init-timestamp:
#16 23.27
#16 23.27 init:
#16 23.27
#16 23.27 copy-resources:
#16 23.27 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.27
#16 23.27 compile:
#16 23.58 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.68 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.04 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.06 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.48 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 24.92 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 24.94 [resolver:resolve] Resolving artifacts
#16 24.95 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.00 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.36 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.37 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 25.78 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 26.14 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 26.15 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 26.45 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 27.45 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 27.45 [javac] int index = unflattenedReader.getCoreIndex();
#16 27.45 [javac] ^
#16 27.45 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 27.45 [javac] reader.setCoreIndex(index);
#16 27.45 [javac] ^
#16 27.65 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 27.65 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 27.65 [javac] ^
#16 27.65 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 27.65 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 27.65 [javac] ^
#16 27.95 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 27.95 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 27.95 [javac] ^
#16 27.95 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 27.95 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 27.95 [javac] ^
#16 28.05 [javac] Note: Some input files use unchecked or unsafe operations.
#16 28.05 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 28.05 [javac] 7 warnings
#16 28.06
#16 28.06 tests.jar:
#16 28.06 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 28.07 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 28.08 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 28.08 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 28.08 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 28.08 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.08
#16 28.08 jars:
#16 28.08
#16 28.08 copy-jars:
#16 28.08
#16 28.08 deps-formats-api:
#16 28.13 [echo] isSnapshot = true
#16 28.17
#16 28.17 install-pom:
#16 28.31 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#16 28.31 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 28.31 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 28.32
#16 28.32 jar-formats-api:
#16 28.40 [echo] isSnapshot = true
#16 28.58
#16 28.58 init-title:
#16 28.58 [echo] ----------=========== formats-api ===========----------
#16 28.58
#16 28.58 init-timestamp:
#16 28.59
#16 28.59 init:
#16 28.59
#16 28.59 copy-resources:
#16 28.59
#16 28.59 compile:
#16 28.72 [resolver:resolve] Resolving artifacts
#16 28.73
#16 28.73 formats-api.jar:
#16 28.74 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#16 28.75 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#16 28.75 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#16 28.75 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 28.75 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 28.75
#16 28.75 deps-turbojpeg:
#16 28.75
#16 28.75 jar-turbojpeg:
#16 28.84 [echo] isSnapshot = true
#16 28.98
#16 28.98 init-title:
#16 28.98 [echo] ----------=========== turbojpeg ===========----------
#16 28.98
#16 28.98 init-timestamp:
#16 28.98
#16 28.98 init:
#16 28.98
#16 28.98 copy-resources:
#16 28.98
#16 28.98 compile:
#16 28.99 [resolver:resolve] Resolving artifacts
#16 28.99
#16 28.99 jar:
#16 28.99 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#16 29.00 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#16 29.00 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#16 29.00 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.01 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 29.01
#16 29.01 deps-formats-bsd:
#16 29.01
#16 29.01 jar-formats-bsd:
#16 29.09 [echo] isSnapshot = true
#16 29.24
#16 29.24 init-title:
#16 29.24 [echo] ----------=========== formats-bsd ===========----------
#16 29.24
#16 29.24 init-timestamp:
#16 29.24
#16 29.24 init:
#16 29.24
#16 29.24 copy-resources:
#16 29.24
#16 29.24 compile:
#16 29.43 [resolver:resolve] Resolving artifacts
#16 29.45
#16 29.45 formats-bsd.jar:
#16 29.48 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#16 29.48 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#16 29.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#16 29.48 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 29.48 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 29.49
#16 29.49 deps-formats-gpl:
#16 29.49
#16 29.49 jar-formats-gpl:
#16 29.57 [echo] isSnapshot = true
#16 29.71
#16 29.71 init-title:
#16 29.71 [echo] ----------=========== formats-gpl ===========----------
#16 29.71
#16 29.71 init-timestamp:
#16 29.71
#16 29.71 init:
#16 29.71
#16 29.71 copy-resources:
#16 29.71
#16 29.71 compile:
#16 29.94 [resolver:resolve] Resolving artifacts
#16 29.96
#16 29.96 formats-gpl.jar:
#16 29.99 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#16 29.99 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#16 29.99 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#16 30.00 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 30.00 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 30.00
#16 30.00 deps-bio-formats-plugins:
#16 30.00
#16 30.00 jar-bio-formats-plugins:
#16 30.08 [echo] isSnapshot = true
#16 30.22
#16 30.22 init-title:
#16 30.22 [echo] ----------=========== bio-formats_plugins ===========----------
#16 30.22
#16 30.22 init-timestamp:
#16 30.22
#16 30.22 init:
#16 30.22
#16 30.22 copy-resources:
#16 30.22
#16 30.22 compile:
#16 30.46 [resolver:resolve] Resolving artifacts
#16 30.47
#16 30.47 bio-formats-plugins.jar:
#16 30.49 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#16 30.49 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#16 30.49 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#16 30.49 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 30.50 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 30.50
#16 30.50 deps-bio-formats-tools:
#16 30.50
#16 30.50 jar-bio-formats-tools:
#16 30.59 [echo] isSnapshot = true
#16 30.74
#16 30.74 init-title:
#16 30.74 [echo] ----------=========== bio-formats-tools ===========----------
#16 30.74
#16 30.74 init-timestamp:
#16 30.74
#16 30.74 init:
#16 30.74
#16 30.74 copy-resources:
#16 30.74
#16 30.74 compile:
#16 30.97 [resolver:resolve] Resolving artifacts
#16 30.98
#16 30.98 bio-formats-tools.jar:
#16 30.98 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#16 30.98 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#16 30.99 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#16 30.99 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 30.99 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 30.99
#16 30.99 deps-tests:
#16 30.99
#16 30.99 jar-tests:
#16 31.08 [echo] isSnapshot = true
#16 31.22
#16 31.22 init-title:
#16 31.22 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 31.22
#16 31.22 init-timestamp:
#16 31.22
#16 31.22 init:
#16 31.22
#16 31.22 copy-resources:
#16 31.22
#16 31.22 compile:
#16 31.46 [resolver:resolve] Resolving artifacts
#16 31.47
#16 31.47 tests.jar:
#16 31.47 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#16 31.48 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#16 31.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#16 31.48 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 31.48 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 31.48
#16 31.48 jars:
#16 31.48
#16 31.48 tools:
#16 31.48 [echo] ----------=========== bioformats_package ===========----------
#16 31.57 [echo] isSnapshot = true
#16 31.71
#16 31.71 init-timestamp:
#16 31.71
#16 31.71 bundle:
#16 31.95 [resolver:resolve] Resolving artifacts
#16 31.96 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.99 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.1.1-SNAPSHOT/ome-common-6.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.01 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.03 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.04 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.09 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.11 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.15 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.16 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.36 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.41 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.43 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.48 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.49 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.50 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.50 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.65 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.07 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.08 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.08 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.08 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.15 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.16 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.16 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.1-SNAPSHOT/ome-xml-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.21 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.1-SNAPSHOT/specification-6.5.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.26 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.28 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.2-SNAPSHOT/ome-codecs-1.1.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.29 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.41 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.47 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.51 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.51 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.60 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.62 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.02 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.04 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.07 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.16 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.17 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.19 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.19 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.39 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.45 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.50 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.59 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.60 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.60 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.71 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.72 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.13 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.14 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.24 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.29 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.30 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.31 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.36 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.39 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.72 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.74 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.74 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.75 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.76 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 35.78 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.13 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.15/logback-core-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.22 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.15/logback-classic-1.3.15.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 36.61 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 43.26 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.83 [resolver:install] Using default POM (ome:bioformats_package:8.4.0-SNAPSHOT)
#16 43.84 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.pom
#16 43.84 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.jar
#16 43.88 [resolver:install] Installing ome:bioformats_package:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/maven-metadata-local.xml
#16 43.89 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 43.89
#16 43.89 BUILD SUCCESSFUL
#16 43.89 Total time: 43 seconds
#16 DONE 44.2s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.2s
#18 exporting to image
#18 exporting layers
#18 exporting layers 4.0s done
#18 writing image sha256:b8bb1a9a80521ba44739d3b6deaa5b9fd455e99306464c7a74b7edd263cb4858 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 4.0s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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