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Downloading from central: https://repo.maven.apache.org/maven2/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar (780 kB at 5.2 MB/s)
#14 294.8 Progress (2): 0.6/6.0 MB | 63/338 kB
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#14 295.1 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#14 295.1 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (80 kB at 87 kB/s)
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (4.3 MB at 1.5 MB/s)
#14 298.0 [[1;34mINFO[m]
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#14 298.0 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 298.0 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 298.0 [[1;34mINFO[m] Storing buildNumber: b07382481de45e89ada699c312cba5bdd0215e8d at timestamp: 1736036174379
#14 298.0 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 298.0 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 298.0
#14 298.0 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 298.0 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 298.0 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
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#14 298.0 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 298.0 [[1;34mINFO[m] Copying 2 resources
#14 298.0 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/formats-gpl/lib
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#14 298.0 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 298.0 [[1;34mINFO[m] Compiling 175 source files to /bio-formats-build/bioformats/components/formats-gpl/target/classes
#14 300.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Some input files use or override a deprecated API.
#14 300.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Recompile with -Xlint:deprecation for details.
#14 300.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Some input files use unchecked or unsafe operations.
#14 300.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Recompile with -Xlint:unchecked for details.
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#14 300.1 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 300.1 [[1;34mINFO[m] Compiling 23 source files to /bio-formats-build/bioformats/components/formats-gpl/target/test-classes
#14 300.3 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java uses unchecked or unsafe operations.
#14 300.3 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: Recompile with -Xlint:unchecked for details.
#14 300.3 [[1;34mINFO[m]
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#14 300.3 [[1;34mINFO[m]
#14 300.3 [[1;34mINFO[m] -------------------------------------------------------
#14 300.3 [[1;34mINFO[m] T E S T S
#14 300.3 [[1;34mINFO[m] -------------------------------------------------------
#14 300.5 [[1;34mINFO[m] Running [1mTestSuite[m
#14 301.6 2025-01-05 00:16:18,042 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@66f66866 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 301.6 2025-01-05 00:16:18,046 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@4f8caaf3 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 301.7 2025-01-05 00:16:18,096 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@4287d447 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 301.7 2025-01-05 00:16:18,097 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@3af37506 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 301.7 2025-01-05 00:16:18,145 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@7dcc91fd reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 301.7 2025-01-05 00:16:18,145 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@36453307 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 301.8 2025-01-05 00:16:18,190 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@49b07ee3 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 301.8 2025-01-05 00:16:18,190 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@383f3558 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 301.8 2025-01-05 00:16:18,235 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@13e698c7 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 301.8 2025-01-05 00:16:18,235 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@5a4c638d reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 301.9 2025-01-05 00:16:18,293 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@17ae7628 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 301.9 2025-01-05 00:16:18,293 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@1136b469 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 301.9 2025-01-05 00:16:18,335 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@201aa8c1 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 301.9 2025-01-05 00:16:18,336 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@5d58c727 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 302.0 2025-01-05 00:16:18,376 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@21719a0 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 302.0 2025-01-05 00:16:18,376 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@76b224cd reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 302.2 [[1;34mINFO[m] [1;32mTests run: [0;1;32m99[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.724 s - in [1mTestSuite[m
#14 302.5 [[1;34mINFO[m]
#14 302.5 [[1;34mINFO[m] Results:
#14 302.5 [[1;34mINFO[m]
#14 302.5 [[1;34mINFO[m] [1;32mTests run: 99, Failures: 0, Errors: 0, Skipped: 0[m
#14 302.5 [[1;34mINFO[m]
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#14 302.5 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-mdb-test)[m @ [36mformats-gpl[0;1m ---[m
#14 302.5 [[1;34mINFO[m]
#14 302.5 [[1;34mINFO[m] -------------------------------------------------------
#14 302.5 [[1;34mINFO[m] T E S T S
#14 302.5 [[1;34mINFO[m] -------------------------------------------------------
#14 302.7 [[1;34mINFO[m] Running [1mTestSuite[m
#14 303.1 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.41 s - in [1mTestSuite[m
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#14 303.4 [[1;34mINFO[m] Results:
#14 303.4 [[1;34mINFO[m]
#14 303.4 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
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#14 303.4 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-poi-test)[m @ [36mformats-gpl[0;1m ---[m
#14 303.4 [[1;34mINFO[m]
#14 303.4 [[1;34mINFO[m] -------------------------------------------------------
#14 303.4 [[1;34mINFO[m] T E S T S
#14 303.4 [[1;34mINFO[m] -------------------------------------------------------
#14 303.6 [[1;34mINFO[m] Running [1mTestSuite[m
#14 304.0 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.396 s - in [1mTestSuite[m
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#14 304.3 [[1;34mINFO[m] Results:
#14 304.3 [[1;34mINFO[m]
#14 304.3 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
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#14 304.3 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-netcdf-test)[m @ [36mformats-gpl[0;1m ---[m
#14 304.3 [[1;34mINFO[m]
#14 304.3 [[1;34mINFO[m] -------------------------------------------------------
#14 304.3 [[1;34mINFO[m] T E S T S
#14 304.3 [[1;34mINFO[m] -------------------------------------------------------
#14 304.5 [[1;34mINFO[m] Running [1mTestSuite[m
#14 304.9 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.396 s - in [1mTestSuite[m
#14 305.2 [[1;34mINFO[m]
#14 305.2 [[1;34mINFO[m] Results:
#14 305.2 [[1;34mINFO[m]
#14 305.2 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
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#14 305.2 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mformats-gpl[0;1m ---[m
#14 305.2 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT.jar
#14 305.2 [[1;34mINFO[m]
#14 305.2 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m >>>[m
#14 305.2 [[1;34mINFO[m]
#14 305.2 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mformats-gpl[0;1m ---[m
#14 305.2 [[1;34mINFO[m]
#14 305.2 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 305.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 305.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 305.2 [[1;34mINFO[m] Storing buildNumber: b07382481de45e89ada699c312cba5bdd0215e8d at timestamp: 1736036181654
#14 305.2 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 305.2 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 305.2
#14 305.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 305.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 305.2 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 305.2 [[1;34mINFO[m]
#14 305.2 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m <<<[m
#14 305.2 [[1;34mINFO[m]
#14 305.2 [[1;34mINFO[m]
#14 305.2 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 305.3 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-sources.jar
#14 305.3 [[1;34mINFO[m]
#14 305.3 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 305.3 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-tests.jar
#14 305.3 [[1;34mINFO[m]
#14 305.3 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mformats-gpl[0;1m ---[m
#14 305.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#14 305.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#14 305.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-sources.jar
#14 305.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-tests.jar
#14 305.3 [[1;34mINFO[m]
#14 305.3 [[1;34mINFO[m] [1m----------------------< [0;36mome:bio-formats_plugins[0;1m >-----------------------[m
#14 305.3 [[1;34mINFO[m] [1mBuilding Bio-Formats Plugins for ImageJ 8.1.0-SNAPSHOT [17/24][m
#14 305.3 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 305.3 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom
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#14 305.4 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar (2.5 MB at 19 MB/s)
#14 305.5 [[1;34mINFO[m]
#14 305.5 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 305.5 [[1;34mINFO[m]
#14 305.5 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 305.5 [[1;34mINFO[m]
#14 305.5 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 305.5 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 305.5 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 305.5 [[1;34mINFO[m] Storing buildNumber: b07382481de45e89ada699c312cba5bdd0215e8d at timestamp: 1736036181934
#14 305.5 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 305.5 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 305.5
#14 305.5 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 305.5 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 305.5 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 305.5 [[1;34mINFO[m]
#14 305.5 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 305.5 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 305.5 [[1;34mINFO[m] Copying 3 resources
#14 305.5 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-plugins/lib
#14 305.5 [[1;34mINFO[m] Copying 0 resource
#14 305.5 [[1;34mINFO[m] Copying 0 resource
#14 305.5 [[1;34mINFO[m]
#14 305.5 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 305.5 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 305.5 [[1;34mINFO[m] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/classes
#14 306.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Some input files use or override a deprecated API.
#14 306.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Recompile with -Xlint:deprecation for details.
#14 306.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#14 306.1 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: Recompile with -Xlint:unchecked for details.
#14 306.1 [[1;34mINFO[m]
#14 306.1 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 306.1 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 306.1 [[1;34mINFO[m] Copying 1 resource
#14 306.1 [[1;34mINFO[m]
#14 306.1 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 306.1 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 306.1 [[1;34mINFO[m] Compiling 3 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/test-classes
#14 306.2 [[1;34mINFO[m]
#14 306.2 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 306.2 [[1;34mINFO[m]
#14 306.2 [[1;34mINFO[m] -------------------------------------------------------
#14 306.2 [[1;34mINFO[m] T E S T S
#14 306.2 [[1;34mINFO[m] -------------------------------------------------------
#14 306.4 [[1;34mINFO[m] Running [1mTestSuite[m
#14 307.6 Warning: Data has too many channels for Colorized color mode
#14 307.7 Warning: Data has too many channels for Colorized color mode
#14 307.7 Warning: Data has too many channels for Colorized color mode
#14 307.8 Warning: Data has too many channels for Colorized color mode
#14 307.8 Warning: Data has too many channels for Colorized color mode
#14 307.8 Warning: Data has too many channels for Colorized color mode
#14 307.9 Warning: Data has too many channels for Colorized color mode
#14 307.9 Warning: Data has too many channels for Colorized color mode
#14 308.0 Warning: Data has too many channels for Composite color mode
#14 308.0 Warning: Data has too many channels for Composite color mode
#14 308.3 Warning: Data has too many channels for Composite color mode
#14 308.3 Warning: Data has too many channels for Composite color mode
#14 308.3 Warning: Data has too many channels for Composite color mode
#14 308.3 Warning: Data has too many channels for Composite color mode
#14 308.3 Warning: Data has too many channels for Composite color mode
#14 308.3 Warning: Data has too many channels for Composite color mode
#14 308.3 Warning: Data has too many channels for Composite color mode
#14 308.3 Warning: Data has too many channels for Composite color mode
#14 308.3 Warning: Data has too many channels for Composite color mode
#14 308.3 Warning: Data has too many channels for Composite color mode
#14 308.4 Warning: Data has too many channels for Composite color mode
#14 308.4 Warning: Data has too many channels for Composite color mode
#14 308.4 Warning: Data has too many channels for Composite color mode
#14 308.4 Warning: Data has too many channels for Composite color mode
#14 308.4 Warning: Data has too many channels for Composite color mode
#14 308.4 Warning: Data has too many channels for Composite color mode
#14 308.7 Warning: Data has too many channels for Composite color mode
#14 308.7 Warning: Data has too many channels for Composite color mode
#14 308.7 Warning: Data has too many channels for Composite color mode
#14 308.7 Warning: Data has too many channels for Composite color mode
#14 308.8 Warning: Data has too many channels for Composite color mode
#14 308.8 Warning: Data has too many channels for Composite color mode
#14 308.8 Warning: Data has too many channels for Composite color mode
#14 308.8 Warning: Data has too many channels for Composite color mode
#14 308.8 Warning: Data has too many channels for Composite color mode
#14 308.8 Warning: Data has too many channels for Composite color mode
#14 308.8 Warning: Data has too many channels for Composite color mode
#14 308.8 Warning: Data has too many channels for Composite color mode
#14 308.8 Warning: Data has too many channels for Composite color mode
#14 308.8 Warning: Data has too many channels for Composite color mode
#14 308.8 Warning: Data has too many channels for Composite color mode
#14 308.8 Warning: Data has too many channels for Composite color mode
#14 308.9 Warning: Data has too many channels for Composite color mode
#14 308.9 Warning: Data has too many channels for Composite color mode
#14 309.2 Warning: Data has too many channels for Composite color mode
#14 309.2 Warning: Data has too many channels for Composite color mode
#14 309.2 Warning: Data has too many channels for Composite color mode
#14 309.2 Warning: Data has too many channels for Composite color mode
#14 309.2 Warning: Data has too many channels for Composite color mode
#14 309.2 Warning: Data has too many channels for Composite color mode
#14 309.2 Warning: Data has too many channels for Composite color mode
#14 309.2 Warning: Data has too many channels for Composite color mode
#14 309.3 Warning: Data has too many channels for Composite color mode
#14 309.3 Warning: Data has too many channels for Composite color mode
#14 309.3 Warning: Data has too many channels for Composite color mode
#14 309.3 Warning: Data has too many channels for Composite color mode
#14 309.3 Warning: Data has too many channels for Composite color mode
#14 309.3 Warning: Data has too many channels for Composite color mode
#14 309.3 Warning: Data has too many channels for Composite color mode
#14 309.3 Warning: Data has too many channels for Composite color mode
#14 309.7 Warning: Data has too many channels for Composite color mode
#14 309.7 Warning: Data has too many channels for Composite color mode
#14 309.7 Warning: Data has too many channels for Composite color mode
#14 309.7 Warning: Data has too many channels for Composite color mode
#14 309.7 Warning: Data has too many channels for Composite color mode
#14 309.7 Warning: Data has too many channels for Composite color mode
#14 309.7 Warning: Data has too many channels for Composite color mode
#14 309.7 Warning: Data has too many channels for Composite color mode
#14 309.7 Warning: Data has too many channels for Composite color mode
#14 309.8 Warning: Data has too many channels for Composite color mode
#14 309.8 Warning: Data has too many channels for Composite color mode
#14 309.8 Warning: Data has too many channels for Composite color mode
#14 309.8 Warning: Data has too many channels for Composite color mode
#14 309.8 Warning: Data has too many channels for Composite color mode
#14 309.8 Warning: Data has too many channels for Composite color mode
#14 309.8 Warning: Data has too many channels for Composite color mode
#14 309.8 Warning: Data has too many channels for Custom color mode
#14 309.9 Warning: Data has too many channels for Custom color mode
#14 309.9 Warning: Data has too many channels for Custom color mode
#14 309.9 Warning: Data has too many channels for Custom color mode
#14 309.9 Warning: Data has too many channels for Custom color mode
#14 310.0 Warning: Data has too many channels for Custom color mode
#14 310.0 Warning: Data has too many channels for Custom color mode
#14 310.0 Warning: Data has too many channels for Custom color mode
#14 310.0 Warning: Data has too many channels for Default color mode
#14 310.1 Warning: Data has too many channels for Default color mode
#14 310.1 Warning: Data has too many channels for Default color mode
#14 310.1 Warning: Data has too many channels for Default color mode
#14 310.1 Warning: Data has too many channels for Default color mode
#14 310.1 Warning: Data has too many channels for Default color mode
#14 310.2 Warning: Data has too many channels for Default color mode
#14 310.2 Warning: Data has too many channels for Default color mode
#14 310.2 Warning: Data has too many channels for Default color mode
#14 310.2 Warning: Data has too many channels for Default color mode
#14 310.2 Warning: Data has too many channels for Default color mode
#14 310.3 Warning: Data has too many channels for Default color mode
#14 310.3 Warning: Data has too many channels for Default color mode
#14 310.3 Warning: Data has too many channels for Default color mode
#14 310.3 Warning: Data has too many channels for Default color mode
#14 310.4 Warning: Data has too many channels for Default color mode
#14 310.4 Warning: Data has too many channels for Grayscale color mode
#14 310.4 Warning: Data has too many channels for Grayscale color mode
#14 310.4 Warning: Data has too many channels for Grayscale color mode
#14 310.5 Warning: Data has too many channels for Grayscale color mode
#14 310.5 Warning: Data has too many channels for Grayscale color mode
#14 310.5 Warning: Data has too many channels for Grayscale color mode
#14 310.5 Warning: Data has too many channels for Grayscale color mode
#14 310.5 Warning: Data has too many channels for Grayscale color mode
#14 310.6 Warning: Data has too many channels for Colorized color mode
#14 310.6 Warning: Data has too many channels for Colorized color mode
#14 310.6 Warning: Data has too many channels for Colorized color mode
#14 311.2 Warning: Data has too many channels for Default color mode
#14 311.4 [[1;34mINFO[m] [1;32mTests run: [0;1;32m30[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.028 s - in [1mTestSuite[m
#14 311.8 [[1;34mINFO[m]
#14 311.8 [[1;34mINFO[m] Results:
#14 311.8 [[1;34mINFO[m]
#14 311.8 [[1;34mINFO[m] [1;32mTests run: 30, Failures: 0, Errors: 0, Skipped: 0[m
#14 311.8 [[1;34mINFO[m]
#14 311.8 [[1;34mINFO[m]
#14 311.8 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 311.8 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#14 311.8 [[1;34mINFO[m]
#14 311.8 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m >>>[m
#14 311.8 [[1;34mINFO[m]
#14 311.8 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 311.8 [[1;34mINFO[m]
#14 311.8 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 311.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 311.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 311.8 [[1;34mINFO[m] Storing buildNumber: b07382481de45e89ada699c312cba5bdd0215e8d at timestamp: 1736036188201
#14 311.8 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 311.8 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 311.8
#14 311.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 311.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 311.8 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 311.8 [[1;34mINFO[m]
#14 311.8 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m <<<[m
#14 311.8 [[1;34mINFO[m]
#14 311.8 [[1;34mINFO[m]
#14 311.8 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 311.8 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar
#14 311.8 [[1;34mINFO[m]
#14 311.8 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 311.8 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar
#14 311.8 [[1;34mINFO[m]
#14 311.8 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 311.8 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#14 311.8 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#14 311.8 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar
#14 311.8 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar
#14 311.8 [[1;34mINFO[m]
#14 311.8 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bio-formats-tools[0;1m >------------------------[m
#14 311.8 [[1;34mINFO[m] [1mBuilding Bio-Formats command line tools 8.1.0-SNAPSHOT [18/24][m
#14 311.8 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 311.8 [[1;34mINFO[m]
#14 311.8 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats-tools[0;1m ---[m
#14 311.8 [[1;34mINFO[m]
#14 311.8 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 311.9 [[1;34mINFO[m]
#14 311.9 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 311.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 311.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 311.9 [[1;34mINFO[m] Storing buildNumber: b07382481de45e89ada699c312cba5bdd0215e8d at timestamp: 1736036188273
#14 311.9 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 311.9 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 311.9
#14 311.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 311.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 311.9 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 311.9 [[1;34mINFO[m]
#14 311.9 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 311.9 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 311.9 [[1;34mINFO[m] Copying 0 resource
#14 311.9 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-tools/lib
#14 311.9 [[1;34mINFO[m] Copying 0 resource
#14 311.9 [[1;34mINFO[m] Copying 0 resource
#14 311.9 [[1;34mINFO[m]
#14 311.9 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 311.9 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 311.9 [[1;34mINFO[m] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/target/classes
#14 312.0 [[1;34mINFO[m]
#14 312.0 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 312.0 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 312.0 [[1;34mINFO[m] Copying 1 resource
#14 312.0 [[1;34mINFO[m]
#14 312.0 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 312.0 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 312.0 [[1;34mINFO[m] Compiling 1 source file to /bio-formats-build/bioformats/components/bio-formats-tools/target/test-classes
#14 312.2 [[1;34mINFO[m]
#14 312.2 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats-tools[0;1m ---[m
#14 312.2 [[1;34mINFO[m]
#14 312.2 [[1;34mINFO[m] -------------------------------------------------------
#14 312.2 [[1;34mINFO[m] T E S T S
#14 312.2 [[1;34mINFO[m] -------------------------------------------------------
#14 312.3 [[1;34mINFO[m] Running loci.formats.tools.[1mImageConverterTest[m
#14 377.1 [[1;34mINFO[m] [1;32mTests run: [0;1;32m55[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 64.739 s - in loci.formats.tools.[1mImageConverterTest[m
#14 377.4 [[1;34mINFO[m]
#14 377.4 [[1;34mINFO[m] Results:
#14 377.4 [[1;34mINFO[m]
#14 377.4 [[1;34mINFO[m] [1;32mTests run: 55, Failures: 0, Errors: 0, Skipped: 0[m
#14 377.4 [[1;34mINFO[m]
#14 377.4 [[1;34mINFO[m]
#14 377.4 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats-tools[0;1m ---[m
#14 377.4 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT.jar
#14 377.4 [[1;34mINFO[m]
#14 377.4 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m >>>[m
#14 377.4 [[1;34mINFO[m]
#14 377.4 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 377.4 [[1;34mINFO[m]
#14 377.4 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 377.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 377.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 377.4 [[1;34mINFO[m] Storing buildNumber: b07382481de45e89ada699c312cba5bdd0215e8d at timestamp: 1736036253860
#14 377.4 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 377.4 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 377.4
#14 377.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 377.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 377.5 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 377.5 [[1;34mINFO[m]
#14 377.5 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m <<<[m
#14 377.5 [[1;34mINFO[m]
#14 377.5 [[1;34mINFO[m]
#14 377.5 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 377.5 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar
#14 377.5 [[1;34mINFO[m]
#14 377.5 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 377.5 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-tests.jar
#14 377.5 [[1;34mINFO[m]
#14 377.5 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats-tools[0;1m ---[m
#14 377.5 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#14 377.5 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#14 377.5 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar
#14 377.5 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT-tests.jar
#14 377.5 [[1;34mINFO[m]
#14 377.5 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bioformats_package[0;1m >-----------------------[m
#14 377.5 [[1;34mINFO[m] [1mBuilding bioformats_package bundle 8.1.0-SNAPSHOT [19/24][m
#14 377.5 [[1;34mINFO[m] [1m--------------------------------[ pom ]---------------------------------[m
#14 377.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-assembly-plugin/3.1.0/maven-assembly-plugin-3.1.0.pom
#14 377.5 Progress (1): 4.1/16 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-assembly-plugin/3.1.0/maven-assembly-plugin-3.1.0.pom (16 kB at 554 kB/s)
#14 377.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-assembly-plugin/3.1.0/maven-assembly-plugin-3.1.0.jar
#14 377.5 Progress (1): 4.1/241 kB
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#14 377.5 [[1;34mINFO[m]
#14 377.5 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbioformats_package[0;1m ---[m
#14 377.5 [[1;34mINFO[m]
#14 377.5 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbioformats_package[0;1m ---[m
#14 377.5 [[1;34mINFO[m]
#14 377.5 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 377.5 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 377.5 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 377.6 [[1;34mINFO[m] Storing buildNumber: b07382481de45e89ada699c312cba5bdd0215e8d at timestamp: 1736036253970
#14 377.6 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 377.6 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 377.6
#14 377.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 377.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 377.6 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 377.6 [[1;34mINFO[m]
#14 377.6 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbioformats_package[0;1m >>>[m
#14 377.6 [[1;34mINFO[m]
#14 377.6 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbioformats_package[0;1m ---[m
#14 377.6 [[1;34mINFO[m]
#14 377.6 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 377.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 377.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 377.6 [[1;34mINFO[m] Storing buildNumber: b07382481de45e89ada699c312cba5bdd0215e8d at timestamp: 1736036253989
#14 377.6 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 377.6 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 377.6
#14 377.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 377.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 377.6 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 377.6 [[1;34mINFO[m]
#14 377.6 [[1;34mINFO[m] [1m<<< [0;32
#14 377.6 [output clipped, log limit 2MiB reached]
#14 480.0 SLF4J: No SLF4J providers were found.
#14 480.0 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 480.0 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 490.8s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s
#16 [12/13] RUN ant jars tools
#16 1.110 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.663 [echo] isSnapshot = true
#16 1.769
#16 1.769 copy-jars:
#16 1.769
#16 1.769 deps-formats-api:
#16 1.859 [echo] isSnapshot = true
#16 1.915
#16 1.915 install-pom:
#16 2.088 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 2.139 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 2.143 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 2.144
#16 2.144 jar-formats-api:
#16 2.263 [echo] isSnapshot = true
#16 2.411
#16 2.411 init-title:
#16 2.411 [echo] ----------=========== formats-api ===========----------
#16 2.411
#16 2.411 init-timestamp:
#16 2.418
#16 2.418 init:
#16 2.418
#16 2.418 copy-resources:
#16 2.419 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.431 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.434
#16 2.434 compile:
#16 2.616 [resolver:resolve] Resolving artifacts
#16 2.641 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.895 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 3.496 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.496 [javac] import loci.common.ReflectedUniverse;
#16 3.496 [javac] ^
#16 3.697 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.697 [javac] int currentIndex = r.getCoreIndex();
#16 3.697 [javac] ^
#16 3.697 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.697 [javac] r.setCoreIndex(coreIndex);
#16 3.697 [javac] ^
#16 3.697 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.697 [javac] r.setCoreIndex(currentIndex);
#16 3.697 [javac] ^
#16 3.898 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.898 [javac] public void setCoreIndex(int no) {
#16 3.898 [javac] ^
#16 3.898 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.898 [javac] public int getCoreIndex() {
#16 3.898 [javac] ^
#16 3.898 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.898 [javac] public int coreIndexToSeries(int index)
#16 3.898 [javac] ^
#16 3.898 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.898 [javac] public int seriesToCoreIndex(int series)
#16 3.898 [javac] ^
#16 3.898 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.898 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.898 [javac] ^
#16 3.999 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.999 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 3.999 [javac] ^
#16 3.999 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.999 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 3.999 [javac] ^
#16 3.999 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.999 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 3.999 [javac] ^
#16 3.999 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.999 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 3.999 [javac] ^
#16 4.100 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.100 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.100 [javac] ^
#16 4.100 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.100 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.100 [javac] ^
#16 4.200 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.200 [javac] public void setCoreIndex(int no) {
#16 4.200 [javac] ^
#16 4.200 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.201 [javac] public int getCoreIndex() {
#16 4.201 [javac] ^
#16 4.201 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.201 [javac] public int coreIndexToSeries(int index) {
#16 4.201 [javac] ^
#16 4.201 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.201 [javac] public int seriesToCoreIndex(int series) {
#16 4.201 [javac] ^
#16 4.201 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.201 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.201 [javac] ^
#16 4.201 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.201 [javac] return getReader().getCoreMetadataList();
#16 4.201 [javac] ^
#16 4.201 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.201 [javac] return getReader().getCoreIndex();
#16 4.201 [javac] ^
#16 4.202 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.202 [javac] getReader().setCoreIndex(no);
#16 4.202 [javac] ^
#16 4.202 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.202 [javac] return getReader().seriesToCoreIndex(series);
#16 4.202 [javac] ^
#16 4.202 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.202 [javac] return getReader().coreIndexToSeries(index);
#16 4.202 [javac] ^
#16 4.303 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.303 [javac] public void setCoreIndex(int no) {
#16 4.303 [javac] ^
#16 4.303 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.303 [javac] public int getCoreIndex() {
#16 4.303 [javac] ^
#16 4.303 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.303 [javac] public int coreIndexToSeries(int index) {
#16 4.303 [javac] ^
#16 4.303 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.303 [javac] public int seriesToCoreIndex(int series) {
#16 4.303 [javac] ^
#16 4.303 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.303 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.303 [javac] ^
#16 4.303 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.303 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.304 [javac] ^
#16 4.304 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.304 [javac] return reader.getCoreIndex();
#16 4.304 [javac] ^
#16 4.304 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.304 [javac] reader.setCoreIndex(no);
#16 4.304 [javac] ^
#16 4.304 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.304 [javac] return reader.seriesToCoreIndex(series);
#16 4.304 [javac] ^
#16 4.304 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.304 [javac] return reader.coreIndexToSeries(index);
#16 4.304 [javac] ^
#16 4.505 [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.505 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.505 [javac] 36 warnings
#16 4.529
#16 4.529 formats-api.jar:
#16 4.529 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.552 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.583 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 4.587 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 4.595 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 4.596 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 4.598 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.599
#16 4.599 deps-turbojpeg:
#16 4.599
#16 4.599 jar-turbojpeg:
#16 4.695 [echo] isSnapshot = true
#16 4.839
#16 4.839 init-title:
#16 4.839 [echo] ----------=========== turbojpeg ===========----------
#16 4.839
#16 4.839 init-timestamp:
#16 4.840
#16 4.840 init:
#16 4.840
#16 4.840 copy-resources:
#16 4.840 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.841
#16 4.841 compile:
#16 4.850 [resolver:resolve] Resolving artifacts
#16 4.853 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.056 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.657 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 5.657 [javac] protected void finalize() throws Throwable {
#16 5.657 [javac] ^
#16 5.657 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 5.657 [javac] super.finalize();
#16 5.657 [javac] ^
#16 5.657 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 5.657 [javac] protected void finalize() throws Throwable {
#16 5.657 [javac] ^
#16 5.657 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 5.658 [javac] super.finalize();
#16 5.658 [javac] ^
#16 5.709 [javac] 5 warnings
#16 5.710
#16 5.710 jar:
#16 5.716 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 5.899 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 5.907 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 5.928 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 5.930 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 5.934 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 5.935
#16 5.935 deps-formats-bsd:
#16 5.935
#16 5.935 jar-formats-bsd:
#16 6.043 [echo] isSnapshot = true
#16 6.190
#16 6.190 init-title:
#16 6.190 [echo] ----------=========== formats-bsd ===========----------
#16 6.190
#16 6.190 init-timestamp:
#16 6.191
#16 6.191 init:
#16 6.191
#16 6.191 copy-resources:
#16 6.191 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.195 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.195
#16 6.195 compile:
#16 6.417 [resolver:resolve] Resolving artifacts
#16 6.447 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.657 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.858 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.858 [javac] import loci.common.ReflectedUniverse;
#16 7.858 [javac] ^
#16 8.258 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.258 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.258 [javac] ^
#16 8.258 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.258 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.258 [javac] ^
#16 8.258 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.259 [javac] int n = reader.getCoreMetadataList().size();
#16 8.259 [javac] ^
#16 8.259 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.259 [javac] reader.setCoreIndex(coreIndex);
#16 8.259 [javac] ^
#16 8.259 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.259 [javac] int n = reader.getCoreMetadataList().size();
#16 8.259 [javac] ^
#16 8.259 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.259 [javac] int n = reader.getCoreMetadataList().size();
#16 8.259 [javac] ^
#16 8.259 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.259 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.259 [javac] ^
#16 8.259 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.259 [javac] int n = reader.getCoreMetadataList().size();
#16 8.259 [javac] ^
#16 8.259 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.259 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.259 [javac] ^
#16 8.259 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.259 [javac] int n = reader.getCoreMetadataList().size();
#16 8.259 [javac] ^
#16 8.259 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.259 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.259 [javac] ^
#16 8.259 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.259 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.259 [javac] ^
#16 8.259 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.259 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.259 [javac] ^
#16 8.259 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.259 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.259 [javac] ^
#16 8.260 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.260 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.260 [javac] ^
#16 8.260 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.260 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.260 [javac] ^
#16 8.260 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.260 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.260 [javac] ^
#16 8.260 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.260 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.260 [javac] ^
#16 8.260 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.260 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.260 [javac] ^
#16 8.460 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.460 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.460 [javac] ^
#16 8.560 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.561 [javac] BitWriter out = new BitWriter();
#16 8.561 [javac] ^
#16 8.561 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.561 [javac] BitWriter out = new BitWriter();
#16 8.561 [javac] ^
#16 8.661 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.661 [javac] return new Double(v);
#16 8.661 [javac] ^
#16 9.362 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.362 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 9.362 [javac] ^
#16 9.362 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.362 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 9.362 [javac] ^
#16 9.362 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.362 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 9.362 [javac] ^
#16 9.462 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.462 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 9.462 [javac] ^
#16 9.663 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.663 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.663 [javac] ^
#16 9.763 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.763 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.763 [javac] ^
#16 9.864 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.864 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.864 [javac] ^
#16 9.864 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.864 [javac] protected ReflectedUniverse r;
#16 9.864 [javac] ^
#16 9.864 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.864 [javac] r = new ReflectedUniverse();
#16 9.864 [javac] ^
#16 9.964 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 9.964 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 9.964 [javac] ^
#16 9.964 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 9.964 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 9.964 [javac] ^
#16 9.964 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 9.964 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 9.964 [javac] ^
#16 9.964 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 9.964 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 9.964 [javac] ^
#16 9.964 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 9.964 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 9.964 [javac] ^
#16 9.965 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 9.965 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 9.965 [javac] ^
#16 9.965 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 9.965 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 9.965 [javac] ^
#16 9.965 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 9.965 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 9.965 [javac] ^
#16 9.965 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 9.965 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 9.965 [javac] ^
#16 10.06 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 10.07 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 10.07 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 10.07 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 10.07 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.07 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.07 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 10.07 [javac] ^
#16 10.07 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.07 [javac] result[i] = new Double(readNumber().doubleValue());
#16 10.07 [javac] ^
#16 10.14 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.14 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.14 [javac] 50 warnings
#16 10.14
#16 10.14 formats-bsd.jar:
#16 10.15 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.26 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 10.26 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 10.28 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 10.28 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 10.28 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.28
#16 10.28 deps-formats-gpl:
#16 10.28
#16 10.28 jar-formats-gpl:
#16 10.38 [echo] isSnapshot = true
#16 10.53
#16 10.53 init-title:
#16 10.53 [echo] ----------=========== formats-gpl ===========----------
#16 10.53
#16 10.53 init-timestamp:
#16 10.53
#16 10.53 init:
#16 10.53
#16 10.53 copy-resources:
#16 10.53 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.53 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.53
#16 10.53 compile:
#16 10.92 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.17 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.20 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.21 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 11.22 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 11.23 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.25 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.26 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.27 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.32 [resolver:resolve] Resolving artifacts
#16 11.33 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 11.33 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 11.37 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 11.37 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 11.39 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 11.39 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 11.40 [javac] Compiling 175 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.61 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 12.81 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.81 [javac] import loci.formats.codec.BitWriter;
#16 12.81 [javac] ^
#16 12.92 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.92 [javac] import loci.formats.codec.BitWriter;
#16 12.92 [javac] ^
#16 14.82 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 14.82 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 14.82 [javac] ^
#16 14.82 [javac] cast to Object for a varargs call
#16 14.82 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 14.92 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.92 [javac] BitWriter bits = null;
#16 14.92 [javac] ^
#16 14.92 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.92 [javac] bits = new BitWriter(planes[index].length / 8);
#16 14.92 [javac] ^
#16 15.22 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 15.22 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 15.22 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.62 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.62 [javac] ^
#16 15.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.62 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.62 [javac] ^
#16 15.92 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 15.92 [javac] Variable variable = group.findVariable(variableName);
#16 15.92 [javac] ^
#16 15.92 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 15.92 [javac] Variable variable = group.findVariable(variableName);
#16 15.92 [javac] ^
#16 15.92 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 15.92 [javac] List<Attribute> attributes = variable.getAttributes();
#16 15.92 [javac] ^
#16 15.92 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.92 [javac] String groupName = group.getName();
#16 15.92 [javac] ^
#16 15.92 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 15.92 [javac] List<Attribute> attributes = group.getAttributes();
#16 15.92 [javac] ^
#16 15.92 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.92 [javac] String variableName = variable.getName();
#16 15.92 [javac] ^
#16 15.92 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 15.92 [javac] Group nextParent = parent.findGroup(token);
#16 15.92 [javac] ^
#16 15.92 [javac] Note: Some input files use unchecked or unsafe operations.
#16 15.92 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 15.92 [javac] 16 warnings
#16 15.92
#16 15.92 formats-gpl.jar:
#16 15.93 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 16.07 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 16.07 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 16.09 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 16.09 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 16.09 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 16.09
#16 16.09 deps-bio-formats-plugins:
#16 16.09
#16 16.09 jar-bio-formats-plugins:
#16 16.18 [echo] isSnapshot = true
#16 16.31
#16 16.31 init-title:
#16 16.31 [echo] ----------=========== bio-formats_plugins ===========----------
#16 16.31
#16 16.31 init-timestamp:
#16 16.31
#16 16.31 init:
#16 16.31
#16 16.31 copy-resources:
#16 16.31 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.32 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.32
#16 16.32 compile:
#16 16.56 [resolver:resolve] Resolving artifacts
#16 16.57 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.88 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 17.68 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.68 [javac] import loci.common.ReflectedUniverse;
#16 17.68 [javac] ^
#16 17.68 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.68 [javac] import loci.common.ReflectedUniverse;
#16 17.68 [javac] ^
#16 18.18 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 18.18 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 18.18 [javac] ^
#16 18.28 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.28 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.28 [javac] ^
#16 18.28 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.28 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.28 [javac] ^
#16 18.38 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.38 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.38 [javac] ^
#16 18.38 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.38 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.38 [javac] ^
#16 18.78 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 18.78 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.78 [javac] 8 warnings
#16 18.80
#16 18.80 bio-formats-plugins.jar:
#16 18.80 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 18.83 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 18.83 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 18.84 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 18.85 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 18.85 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 18.85
#16 18.85 deps-bio-formats-tools:
#16 18.85
#16 18.85 jar-bio-formats-tools:
#16 18.95 [echo] isSnapshot = true
#16 19.08
#16 19.08 init-title:
#16 19.08 [echo] ----------=========== bio-formats-tools ===========----------
#16 19.08
#16 19.08 init-timestamp:
#16 19.08
#16 19.08 init:
#16 19.08
#16 19.08 copy-resources:
#16 19.09 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.09
#16 19.09 compile:
#16 19.32 [resolver:resolve] Resolving artifacts
#16 19.33 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.54 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 20.59 [javac] 1 warning
#16 20.59
#16 20.59 bio-formats-tools.jar:
#16 20.59 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 20.60 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 20.61 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 20.67 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 20.67 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 20.67 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 20.67
#16 20.67 deps-tests:
#16 20.67
#16 20.67 jar-tests:
#16 20.76 [echo] isSnapshot = true
#16 20.90
#16 20.90 init-title:
#16 20.90 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 20.90
#16 20.90 init-timestamp:
#16 20.90
#16 20.90 init:
#16 20.90
#16 20.90 copy-resources:
#16 20.90 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 20.90
#16 20.90 compile:
#16 21.20 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.28 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.29 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.71 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.12 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 22.15 [resolver:resolve] Resolving artifacts
#16 22.16 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.20 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.21 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.61 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.97 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 22.97 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 23.18 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 24.18 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.18 [javac] int index = unflattenedReader.getCoreIndex();
#16 24.18 [javac] ^
#16 24.18 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 24.18 [javac] reader.setCoreIndex(index);
#16 24.18 [javac] ^
#16 24.48 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2259: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.48 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.48 [javac] ^
#16 24.48 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2425: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.48 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.48 [javac] ^
#16 24.68 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.68 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 24.68 [javac] ^
#16 24.68 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.68 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 24.68 [javac] ^
#16 24.78 [javac] Note: Some input files use unchecked or unsafe operations.
#16 24.78 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 24.78 [javac] 7 warnings
#16 24.78
#16 24.78 tests.jar:
#16 24.78 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 24.81 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 24.81 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 24.83 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 24.83 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.83 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 24.83
#16 24.83 jars:
#16 24.83
#16 24.83 copy-jars:
#16 24.83
#16 24.83 deps-formats-api:
#16 24.89 [echo] isSnapshot = true
#16 24.93
#16 24.93 install-pom:
#16 25.06 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 25.09 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.09 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 25.10
#16 25.10 jar-formats-api:
#16 25.17 [echo] isSnapshot = true
#16 25.30
#16 25.30 init-title:
#16 25.30 [echo] ----------=========== formats-api ===========----------
#16 25.30
#16 25.30 init-timestamp:
#16 25.30
#16 25.30 init:
#16 25.30
#16 25.30 copy-resources:
#16 25.30
#16 25.30 compile:
#16 25.43 [resolver:resolve] Resolving artifacts
#16 25.44
#16 25.44 formats-api.jar:
#16 25.45 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 25.46 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 25.46 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 25.46 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.46 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 25.46
#16 25.46 deps-turbojpeg:
#16 25.46
#16 25.46 jar-turbojpeg:
#16 25.54 [echo] isSnapshot = true
#16 25.66
#16 25.66 init-title:
#16 25.66 [echo] ----------=========== turbojpeg ===========----------
#16 25.66
#16 25.66 init-timestamp:
#16 25.66
#16 25.66 init:
#16 25.66
#16 25.66 copy-resources:
#16 25.66
#16 25.66 compile:
#16 25.67 [resolver:resolve] Resolving artifacts
#16 25.67
#16 25.67 jar:
#16 25.68 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 25.68 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 25.68 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 25.69 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.69 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 25.69
#16 25.69 deps-formats-bsd:
#16 25.69
#16 25.69 jar-formats-bsd:
#16 25.77 [echo] isSnapshot = true
#16 25.89
#16 25.89 init-title:
#16 25.89 [echo] ----------=========== formats-bsd ===========----------
#16 25.89
#16 25.89 init-timestamp:
#16 25.89
#16 25.89 init:
#16 25.89
#16 25.89 copy-resources:
#16 25.89
#16 25.89 compile:
#16 26.09 [resolver:resolve] Resolving artifacts
#16 26.11
#16 26.11 formats-bsd.jar:
#16 26.14 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 26.14 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 26.14 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 26.14 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.14 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 26.15
#16 26.15 deps-formats-gpl:
#16 26.15
#16 26.15 jar-formats-gpl:
#16 26.22 [echo] isSnapshot = true
#16 26.35
#16 26.35 init-title:
#16 26.35 [echo] ----------=========== formats-gpl ===========----------
#16 26.35
#16 26.35 init-timestamp:
#16 26.35
#16 26.35 init:
#16 26.35
#16 26.35 copy-resources:
#16 26.35
#16 26.35 compile:
#16 26.56 [resolver:resolve] Resolving artifacts
#16 26.58
#16 26.58 formats-gpl.jar:
#16 26.61 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 26.61 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 26.62 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 26.62 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.62 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 26.62
#16 26.62 deps-bio-formats-plugins:
#16 26.62
#16 26.62 jar-bio-formats-plugins:
#16 26.77 [echo] isSnapshot = true
#16 26.90
#16 26.90 init-title:
#16 26.90 [echo] ----------=========== bio-formats_plugins ===========----------
#16 26.90
#16 26.90 init-timestamp:
#16 26.90
#16 26.90 init:
#16 26.90
#16 26.90 copy-resources:
#16 26.90
#16 26.90 compile:
#16 27.14 [resolver:resolve] Resolving artifacts
#16 27.15
#16 27.15 bio-formats-plugins.jar:
#16 27.16 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 27.16 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 27.17 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 27.17 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.17 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 27.17
#16 27.17 deps-bio-formats-tools:
#16 27.17
#16 27.17 jar-bio-formats-tools:
#16 27.26 [echo] isSnapshot = true
#16 27.39
#16 27.39 init-title:
#16 27.39 [echo] ----------=========== bio-formats-tools ===========----------
#16 27.39
#16 27.39 init-timestamp:
#16 27.39
#16 27.39 init:
#16 27.39
#16 27.39 copy-resources:
#16 27.39
#16 27.39 compile:
#16 27.63 [resolver:resolve] Resolving artifacts
#16 27.64
#16 27.64 bio-formats-tools.jar:
#16 27.64 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 27.65 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 27.65 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 27.65 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.65 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 27.65
#16 27.65 deps-tests:
#16 27.65
#16 27.65 jar-tests:
#16 27.73 [echo] isSnapshot = true
#16 27.86
#16 27.86 init-title:
#16 27.86 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 27.86
#16 27.86 init-timestamp:
#16 27.86
#16 27.86 init:
#16 27.86
#16 27.86 copy-resources:
#16 27.87
#16 27.87 compile:
#16 28.09 [resolver:resolve] Resolving artifacts
#16 28.10
#16 28.10 tests.jar:
#16 28.11 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 28.11 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 28.11 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 28.11 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 28.11 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.11
#16 28.11 jars:
#16 28.11
#16 28.11 tools:
#16 28.11 [echo] ----------=========== bioformats_package ===========----------
#16 28.22 [echo] isSnapshot = true
#16 28.34
#16 28.34 init-timestamp:
#16 28.34
#16 28.34 bundle:
#16 28.56 [resolver:resolve] Resolving artifacts
#16 28.57 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.60 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.25-SNAPSHOT/ome-common-6.0.25-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.62 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.65 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.66 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.72 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.74 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.80 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.81 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.04 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.09 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.11 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.17 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.18 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.20 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.20 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.38 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.90 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.90 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.90 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.91 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.00 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.01 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.01 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.07 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.13 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.15 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.1-SNAPSHOT/ome-codecs-1.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.16 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.31 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.38 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.42 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.43 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.47 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.49 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.94 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.96 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.99 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.06 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.17 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.19 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.21 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.22 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.46 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.54 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.60 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.70 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.72 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.72 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.85 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.86 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.36 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.37 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.49 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.55 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.56 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.57 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.63 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.67 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.83 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.84 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.85 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.87 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.87 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.90 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.31 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.43 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.81 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 39.36 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.93 [resolver:install] Using default POM (ome:bioformats_package:8.1.0-SNAPSHOT)
#16 39.94 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.pom
#16 39.96 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.jar
#16 39.99 [resolver:install] Installing ome:bioformats_package:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 39.99 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 40.00
#16 40.00 BUILD SUCCESSFUL
#16 40.00 Total time: 38 seconds
#16 DONE 40.3s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.2s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.4s done
#18 writing image sha256:8ee5be56dfba94dfd244aec12b8c8de40c7000fdc750e5fc187ed656f63b06a8 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci 0.0s done
#18 DONE 3.5s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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