![[Jenkins]](/jenkins/static/d8ca237c/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 302 originally caused by: Started by upstream project "Trigger" build number 324 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins3202638338134701042.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_47886_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 06:37:02,756 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:37:02,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 06:37:02,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:37:02,759 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:37:02,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:37:02,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:37:02,759 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:37:02,759 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:37:02,760 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:37:02,760 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:37:02,761 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:37:02,761 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:37:02,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:37:02,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:37:02,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:37:02,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:37:02,938 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:37:02,939 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:37:02,939 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:37:02,939 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:37:02,939 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 06:37:02,940 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 06:37:02,940 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 180 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-29 06:37:02,948] [main] java.version = 17.0.2 [testng] 06:37:02,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:37:02,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:02,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-29_06-37-02.log] [testng] 06:37:02,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-29 06:37:02,993] [main] testng.directory = /data [testng] [2024-12-29 06:37:02,993] [main] testng.configDirectory = /config [testng] [2024-12-29 06:37:03,001] [main] testng.multiplier = 1.0 [testng] [2024-12-29 06:37:03,001] [main] testng.in-memory = false [testng] [2024-12-29 06:37:03,001] [main] testng.allow-missing = false [testng] [2024-12-29 06:37:03,001] [main] user.language = en [testng] [2024-12-29 06:37:03,002] [main] user.country = ${user.country} [testng] [2024-12-29 06:37:03,002] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-29 06:37:08,407] [main] ---------------------------------------- [testng] [2024-12-29 06:37:08,407] [main] Total files: 22 [testng] [2024-12-29 06:37:08,407] [main] Scan time: 5.405 s (245 ms/file) [testng] [2024-12-29 06:37:08,407] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-29 06:37:33,211] [pool-1-thread-1] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 06:37:33,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:37:33,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:33,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-29_06-37-33.log] [testng] 06:37:33,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@453380a7 - End of configuration. [testng] [2024-12-29 06:37:33,853] [pool-1-thread-12] Initializing /data/alex/AFAset0003.ips: [testng] 06:37:33,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:37:33,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:33,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-29_06-37-33.log] [testng] 06:37:33,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fbd4e66 - End of configuration. [testng] [2024-12-29 06:37:34,538] [pool-1-thread-11] Initializing /data/converted/clown8c.tif: [testng] 06:37:34,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:37:34,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:34,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-29_06-37-34.log] [testng] 06:37:34,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@545f1d51 - End of configuration. [testng] [2024-12-29 06:37:36,143] [pool-1-thread-10] Initializing /data/converted/mitosis-test.ipw: [testng] 06:37:36,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:37:36,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:36,144 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-29_06-37-36.log] [testng] 06:37:36,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@463c8918 - End of configuration. [testng] [2024-12-29 06:37:36,808] [pool-1-thread-9] Initializing /data/converted/clown.seq: [testng] 06:37:36,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:37:36,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:36,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-29_06-37-36.log] [testng] 06:37:36,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b28965a - End of configuration. [testng] [2024-12-29 06:37:37,533] [pool-1-thread-8] Initializing /data/samples/HEART.SEQ: [testng] 06:37:37,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:37:37,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:37,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-29_06-37-37.log] [testng] 06:37:37,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bbf2160 - End of configuration. [testng] [2024-12-29 06:37:38,323] [pool-1-thread-7] Initializing /data/converted/dub01.ipw: [testng] 06:37:38,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:37:38,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:38,324 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-29_06-37-38.log] [testng] 06:37:38,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2178fc12 - End of configuration. [testng] [2024-12-29 06:37:39,074] [pool-1-thread-6] Initializing /data/converted/clown.tif: [testng] 06:37:39,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:37:39,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:39,075 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-29_06-37-39.log] [testng] 06:37:39,075 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57e6d10c - End of configuration. [testng] [2024-12-29 06:37:39,793] [pool-1-thread-5] Initializing /data/samples/PROBE.TIF: [testng] 06:37:39,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:37:39,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:39,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-29_06-37-39.log] [testng] 06:37:39,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6265941d - End of configuration. [testng] [2024-12-29 06:37:40,462] [pool-1-thread-4] Initializing /data/converted/clown8c.ipw: [testng] 06:37:40,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:37:40,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:40,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-29_06-37-40.log] [testng] 06:37:40,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f5d248 - End of configuration. [testng] [2024-12-29 06:37:41,290] [pool-1-thread-3] Initializing /data/converted/clown8c.seq: [testng] 06:37:41,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:37:41,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:41,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-29_06-37-41.log] [testng] 06:37:41,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eca686c - End of configuration. [testng] [2024-12-29 06:37:41,930] [pool-1-thread-2] Initializing /data/converted/dub01.pic: [testng] 06:37:41,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:37:41,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:41,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-29_06-37-41.log] [testng] 06:37:41,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bf75dbe - End of configuration. [testng] [2024-12-29 06:37:50,219] [pool-1-thread-2] Initializing /data/samples/FLDUAL.TIF: [testng] [2024-12-29 06:37:52,012] [pool-1-thread-7] Initializing /data/xiuwen/head2.seq: [testng] [2024-12-29 06:37:52,802] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-12-29 06:37:54,524] [pool-1-thread-6] Initializing /data/converted/mitosis-test.tif: [testng] [2024-12-29 06:37:56,181] [pool-1-thread-9] Initializing /data/converted/NESb_C2_TP7.seq: [testng] [2024-12-29 06:37:57,229] [pool-1-thread-3] Initializing /data/samples/TISSUE.TIF: [testng] [2024-12-29 06:37:59,247] [pool-1-thread-8] Initializing /data/converted/mitosis-test.seq: [testng] [2024-12-29 06:38:00,040] [pool-1-thread-5] Initializing /data/converted/dub01.seq: [testng] [2024-12-29 06:38:00,836] [pool-1-thread-1] Initializing /data/converted/clown.ipw: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 24 seconds Finished: SUCCESS