Skip to content

Console Output

+ gradle --init-script init-ci.gradle publishToMavenLocal --refresh-dependencies
To honour the JVM settings for this build a single-use Daemon process will be forked. See https://docs.gradle.org/6.9.3/userguide/gradle_daemon.html#sec:disabling_the_daemon.
Daemon will be stopped at the end of the build 
> Task :omero-romio:processResources NO-SOURCE
> Task :omero-renderer:processResources NO-SOURCE
> Task :omero-gateway-java:processResources NO-SOURCE
> Task :omero-common:processResources
> Task :omero-gateway-java:generatePomFileForOmeroGatewayPublication
> Task :omero-romio:generatePomFileForOmeroRomioPublication
> Task :omero-renderer:generatePomFileForOmeroRendererPublication
> Task :omero-blitz:processResources
> Task :omero-blitz:generatePomFileForOmeroBlitzPublication
> Task :omero-common:processTestResources
> Task :omero-common:generatePomFileForOmeroCommonPublication
> Task :omero-romio:sourcesJar
> Task :omero-renderer:sourcesJar
> Task :omero-model:generateEnumsPsql
> Task :omero-server:compileSlice
> Task :omero-model:generateHibernatePsql
> Task :omero-gateway-java:sourcesJar
> Task :omero-common:sourcesJar
> Task :omero-server:processResources
> Task :omero-server:generatePomFileForOmeroServerPublication
> Task :omero-blitz:sourcesJar
> Task :omero-server:sourcesJar
> Task :omero-model:generateJavaPsql
> Task :omero-model:generateSqlPsql

> Task :omero-model:compileJava
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.

> Task :omero-model:processResources
> Task :omero-model:classes
> Task :omero-model:jar
> Task :omero-model:generateMetadataFileForOmeroModelPublication
> Task :omero-model:generatePomFileForOmeroModelPublication
> Task :omero-model:javadoc
> Task :omero-model:javadocJar
> Task :omero-model:sourcesJar
> Task :omero-model:publishOmeroModelPublicationToMavenLocal
> Task :omero-model:publishToMavenLocal

> Task :omero-common:compileJava
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.

> Task :omero-common:classes

> Task :omero-common:compileTestJava
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.

> Task :omero-common:testClasses
> Task :omero-common:jar
> Task :omero-common:generateMetadataFileForOmeroCommonPublication
> Task :omero-common:javadoc
> Task :omero-common:javadocJar
> Task :omero-common:publishOmeroCommonPublicationToMavenLocal
> Task :omero-common:publishToMavenLocal

> Task :omero-romio:compileJava
Note: /home/omero/workspace/OMERO-build-build/omero-romio/src/main/java/ome/io/bioformats/BfPixelBuffer.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.

> Task :omero-romio:classes
> Task :omero-romio:jar
> Task :omero-romio:generateMetadataFileForOmeroRomioPublication
> Task :omero-romio:javadoc
> Task :omero-romio:javadocJar
> Task :omero-romio:publishOmeroRomioPublicationToMavenLocal
> Task :omero-romio:publishToMavenLocal

> Task :omero-renderer:compileJava
Note: /home/omero/workspace/OMERO-build-build/omero-renderer/src/main/java/omeis/providers/re/Renderer.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.

> Task :omero-renderer:classes
> Task :omero-renderer:jar
> Task :omero-renderer:generateMetadataFileForOmeroRendererPublication
> Task :omero-renderer:javadoc
> Task :omero-renderer:javadocJar
> Task :omero-renderer:publishOmeroRendererPublicationToMavenLocal
> Task :omero-renderer:publishToMavenLocal

> Task :omero-server:compileJava
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.

> Task :omero-server:classes
> Task :omero-server:jar
> Task :omero-blitz:importDatabaseTypes
> Task :omero-server:generateMetadataFileForOmeroServerPublication
> Task :omero-blitz:importMappings
> Task :omero-blitz:generateCombinedPsql
> Task :omero-blitz:generateIce
> Task :omero-blitz:copySliceFiles
> Task :omero-server:javadoc
> Task :omero-server:javadocJar
> Task :omero-server:publishOmeroServerPublicationToMavenLocal
> Task :omero-server:publishToMavenLocal
> Task :omero-blitz:compileSlice
> Task :omero-blitz:generateIceMapPsql
> Task :omero-blitz:generateJava
> Task :omero-blitz:generateModelObjectFactoryRegistryPsql
> Task :omero-blitz:generatePython
> Task :omero-blitz:pythonTaskOmero
> Task :omero-blitz:pythonTaskOmeroApi
> Task :omero-blitz:pythonTaskOmeroCmd
> Task :omero-blitz:pythonTaskOmeroModel
> Task :omero-blitz:pythonTaskGroup
> Task :omero-blitz:generateObjectFactoryRegistrarPsql
> Task :omero-blitz:compileJava
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.

> Task :omero-blitz:classes
> Task :omero-blitz:jar
> Task :omero-blitz:generateMetadataFileForOmeroBlitzPublication
> Task :omero-gateway-java:compileJava
> Task :omero-blitz:javadoc
> Task :omero-blitz:javadocJar
> Task :omero-blitz:pythonZip
> Task :omero-blitz:compileIcedoc
> Task :omero-blitz:zipIcedoc
> Task :omero-blitz:publishOmeroBlitzPublicationToMavenLocal
> Task :omero-blitz:publishToMavenLocal

> Task :omero-gateway-java:compileJava
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/Connector.java:38: error: package org.apache.commons.lang does not exist
import org.apache.commons.lang.StringUtils;
                              ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/Gateway.java:44: error: package org.apache.commons.lang does not exist
import org.apache.commons.lang.StringUtils;
                              ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/facility/AdminFacility.java:30: error: package org.apache.commons.lang does not exist
import org.apache.commons.lang.StringUtils;
                              ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/facility/BrowseFacility.java:37: error: package org.apache.commons.lang does not exist
import org.apache.commons.lang.StringUtils;
                              ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/ScreenData.java:28: error: package org.apache.commons.lang does not exist
import org.apache.commons.lang.StringUtils;
                              ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/PlateAcquisitionData.java:27: error: package org.apache.commons.lang does not exist
import org.apache.commons.lang.StringUtils;
                              ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/ChannelData.java:40: error: package org.apache.commons.lang does not exist
import org.apache.commons.lang.StringUtils;
                              ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/facility/ROIFacility.java:36: error: package org.apache.commons.lang does not exist
import org.apache.commons.lang.NotImplementedException;
                              ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/SearchParameters.java:30: error: package org.apache.commons.lang does not exist
import org.apache.commons.lang.StringUtils;
                              ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/TableDataColumn.java:24: error: package org.apache.commons.lang does not exist
import org.apache.commons.lang.StringUtils;
                              ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/TermAnnotationData.java:23: error: package org.apache.commons.lang does not exist
import org.apache.commons.lang.StringUtils;
                              ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/XMLAnnotationData.java:23: error: package org.apache.commons.lang does not exist
import org.apache.commons.lang.StringUtils;
                              ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/util/ModelMapper.java:32: error: package org.apache.commons.lang does not exist
import org.apache.commons.lang.StringUtils;
                              ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/Connector.java:946: error: cannot find symbol
        if (StringUtils.isBlank(userName)) 
            ^
  symbol:   variable StringUtils
  location: class Connector
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/Gateway.java:520: error: cannot find symbol
                if (StringUtils.isNotEmpty(userName))
                    ^
  symbol:   variable StringUtils
  location: class Gateway
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/Gateway.java:707: error: cannot find symbol
        if (StringUtils.isNotEmpty(userName)) {
            ^
  symbol:   variable StringUtils
  location: class Gateway
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/Gateway.java:949: error: cannot find symbol
        if (StringUtils.isNotEmpty(userName)) {
            ^
  symbol:   variable StringUtils
  location: class Gateway
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/Gateway.java:1191: error: cannot find symbol
            if (StringUtils.isNotEmpty(clientVersion)
                ^
  symbol:   variable StringUtils
  location: class Gateway
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/Gateway.java:1192: error: cannot find symbol
                    && StringUtils.isNotEmpty(serverVersion)
                       ^
  symbol:   variable StringUtils
  location: class Gateway
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/facility/AdminFacility.java:264: error: cannot find symbol
        if(StringUtils.isBlank(name))
           ^
  symbol:   variable StringUtils
  location: class AdminFacility
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/facility/AdminFacility.java:296: error: cannot find symbol
        if(StringUtils.isBlank(name))
           ^
  symbol:   variable StringUtils
  location: class AdminFacility
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/facility/BrowseFacility.java:275: error: cannot find symbol
        if (StringUtils.isBlank(klassName) || id < 0)
            ^
  symbol:   variable StringUtils
  location: class BrowseFacility
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/facility/BrowseFacility.java:319: error: cannot find symbol
        if (StringUtils.isBlank(pojoName) || id < 0)
            ^
  symbol:   variable StringUtils
  location: class BrowseFacility
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/ScreenData.java:206: error: cannot find symbol
        if (StringUtils.isNotBlank(value))
            ^
  symbol:   variable StringUtils
  location: class ScreenData
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/ScreenData.java:228: error: cannot find symbol
        if (StringUtils.isNotBlank(value))
            ^
  symbol:   variable StringUtils
  location: class ScreenData
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/ScreenData.java:250: error: cannot find symbol
        if (StringUtils.isNotBlank(value))
            ^
  symbol:   variable StringUtils
  location: class ScreenData
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/ScreenData.java:272: error: cannot find symbol
        if (StringUtils.isNotBlank(value))
            ^
  symbol:   variable StringUtils
  location: class ScreenData
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/PlateAcquisitionData.java:136: error: cannot find symbol
        if (StringUtils.isBlank(description)) return;
            ^
  symbol:   variable StringUtils
  location: class PlateAcquisitionData
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/PlateAcquisitionData.java:178: error: cannot find symbol
        if (StringUtils.isNotBlank(name)) {
            ^
  symbol:   variable StringUtils
  location: class PlateAcquisitionData
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/ChannelData.java:119: error: cannot find symbol
        if (StringUtils.isNotBlank(value)) return value;
            ^
  symbol:   variable StringUtils
  location: class ChannelData
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/ChannelData.java:121: error: cannot find symbol
        if (StringUtils.isNotBlank(value)) return value;
            ^
  symbol:   variable StringUtils
  location: class ChannelData
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/facility/ROIFacility.java:606: error: cannot find symbol
                        throw new NotImplementedException(
                                  ^
  symbol:   class NotImplementedException
  location: class ROIFacility
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/SearchParameters.java:165: error: cannot find symbol
        return !(StringUtils.isBlank(query) && start == null
                 ^
  symbol:   variable StringUtils
  location: class SearchParameters
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/SearchParameters.java:177: error: cannot find symbol
        return StringUtils.isNotBlank(query);
               ^
  symbol:   variable StringUtils
  location: class SearchParameters
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/TableDataColumn.java:237: error: cannot find symbol
        if (StringUtils.isNotEmpty(description))
            ^
  symbol:   variable StringUtils
  location: class TableDataColumn
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/TermAnnotationData.java:100: error: cannot find symbol
        if (StringUtils.isBlank(value)) {
            ^
  symbol:   variable StringUtils
  location: class TermAnnotationData
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/XMLAnnotationData.java:83: error: cannot find symbol
        if (StringUtils.isBlank(value))
            ^
  symbol:   variable StringUtils
  location: class XMLAnnotationData
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/util/ModelMapper.java:484: error: cannot find symbol
            if (StringUtils.isNotEmpty(ns)) {
                ^
  symbol:   variable StringUtils
  location: class ModelMapper
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/util/ModelMapper.java:514: error: cannot find symbol
            if (StringUtils.isNotEmpty(ns)) {
                ^
  symbol:   variable StringUtils
  location: class ModelMapper
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
39 errors

> Task :omero-gateway-java:compileJava FAILED

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':omero-gateway-java:compileJava'.
> Compilation failed; see the compiler error output for details.

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights.

* Get more help at https://help.gradle.org

Deprecated Gradle features were used in this build, making it incompatible with Gradle 7.0.
Use '--warning-mode all' to show the individual deprecation warnings.
See https://docs.gradle.org/6.9.3/userguide/command_line_interface.html#sec:command_line_warnings

BUILD FAILED in 5m 7s