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2025-09-12 00:41:22,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2025-09-12 00:41:23,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-09-12 00:41:23,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:41:24,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-09-12 00:41:24,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:41:24,577 [    scc.repo] DEBUG   - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-09-12 00:41:24,577 [    scc.repo] DEBUG ## Branches found:
2025-09-12 00:41:24,577 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-09-12 00:41:24,577 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:41:24,577 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:24,580 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-12 00:41:24,583 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-12 00:41:24,583 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-12 00:41:24,586 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-12 00:41:24,594 [     scc.git] DEBUG Updating 3cd120c..55060a2

2025-09-12 00:41:25,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-09-12 00:41:25,220 [     scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-09-12 00:41:25,517 [     scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-09-12 00:41:25,517 [     scc.git] DEBUG  * branch            refs/pull/55/head -> FETCH_HEAD
2025-09-12 00:41:25,522 [     scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-09-12 00:41:25,799 [     scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-09-12 00:41:25,799 [     scc.git] DEBUG  * branch            refs/pull/64/head -> FETCH_HEAD
2025-09-12 00:41:25,803 [     scc.git] DEBUG ## Unique users: []
2025-09-12 00:41:25,803 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:41:25,803 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:25,805 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-12 00:41:25,810 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:25,812 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-12 00:41:25,826 [     scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-09-12 00:41:25,826 [     scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-09-12 00:41:25,826 [     scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-09-12 00:41:25,826 [     scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-09-12 00:41:25,826 [     scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-12 00:41:25,826 [     scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-12 00:41:25,830 [     scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-12 00:41:25,835 [     scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-09-12 00:41:26,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:41:26,004 [     scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-12 00:41:26,009 [     scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-12 00:41:26,012 [     scc.git] INFO    - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#530](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/consoleText) for more details.
Possible conflicts:
  - Upstream changes
    - src/omero_metadata/cli.py
    - src/omero_metadata/populate.py

--conflicts

2025-09-12 00:41:26,014 [  scc.config] DEBUG Found github.token
2025-09-12 00:41:26,014 [     scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-09-12 00:41:26,014 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-12 00:41:26,019 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:26,021 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-12 00:41:26,036 [     scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-09-12 00:41:26,036 [     scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-09-12 00:41:26,036 [     scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-09-12 00:41:26,036 [     scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-12 00:41:26,037 [     scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-12 00:41:26,040 [     scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-12 00:41:26,045 [     scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-09-12 00:41:26,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:41:26,413 [     scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-12 00:41:26,417 [     scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-12 00:41:26,420 [     scc.git] INFO    - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#530](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/consoleText) for more details.
Possible conflicts:
  - PR #55 kkoz 'Prevent users from creating columns with python keyword names'
    - src/omero_metadata/populate.py
  - Upstream changes
    - src/omero_metadata/populate.py

--conflicts

2025-09-12 00:41:26,422 [  scc.config] DEBUG Found github.token
2025-09-12 00:41:26,422 [     scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-09-12 00:41:26,422 [     scc.git] DEBUG Calling 'git submodule update'
2025-09-12 00:41:26,462 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:41:26,462 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:26,465 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-12 00:41:26,503 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-09-12 00:41:26,507 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f46f84c7850> has no local changes
2025-09-12 00:41:26,507 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
  - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'

Conflicting PRs (not included):
  - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
  - PR 64 will-moore 'Support images_by_name for Screen and Plate'

Generated by OMERO-plugins-push#530 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/)'
2025-09-12 00:41:26,515 [     scc.git] DEBUG [detached HEAD be9e976] merge master -Dorg -Ssuccess-only
2025-09-12 00:41:26,515 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:41:26,515 [    scc.repo] DEBUG ## PRs found:
2025-09-12 00:41:27,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-09-12 00:41:27,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-09-12 00:41:28,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-09-12 00:41:28,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:41:29,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-12 00:41:29,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-09-12 00:41:30,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:41:30,014 [    scc.repo] DEBUG   - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-12 00:41:30,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-09-12 00:41:30,523 [    scc.repo] DEBUG   # ... Include label: dependencies
2025-09-12 00:41:31,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-09-12 00:41:31,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:41:32,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-12 00:41:32,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-09-12 00:41:32,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:41:32,976 [    scc.repo] DEBUG   - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-09-12 00:41:33,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-09-12 00:41:33,449 [    scc.repo] DEBUG   # ... Include label: dependencies
2025-09-12 00:41:34,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-09-12 00:41:34,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:41:35,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-12 00:41:35,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-09-12 00:41:35,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:41:35,992 [    scc.repo] DEBUG   - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-09-12 00:41:36,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-09-12 00:41:36,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-09-12 00:41:37,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-09-12 00:41:37,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-09-12 00:41:38,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-09-12 00:41:38,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-09-12 00:41:39,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-09-12 00:41:39,323 [    scc.repo] DEBUG ## Branches found:
2025-09-12 00:41:39,323 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-09-12 00:41:39,323 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:41:39,323 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:39,326 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-12 00:41:39,329 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-12 00:41:39,329 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-12 00:41:39,332 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-12 00:41:39,335 [     scc.git] DEBUG Already up to date.

2025-09-12 00:41:39,335 [     scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-09-12 00:41:39,620 [     scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-12 00:41:39,620 [     scc.git] DEBUG  * branch            refs/pull/140/head -> FETCH_HEAD
2025-09-12 00:41:39,624 [     scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-09-12 00:41:39,900 [     scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-12 00:41:39,900 [     scc.git] DEBUG  * branch            refs/pull/141/head -> FETCH_HEAD
2025-09-12 00:41:39,904 [     scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-09-12 00:41:40,184 [     scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-12 00:41:40,184 [     scc.git] DEBUG  * branch            refs/pull/142/head -> FETCH_HEAD
2025-09-12 00:41:40,188 [     scc.git] DEBUG ## Unique users: []
2025-09-12 00:41:40,188 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:41:40,188 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:40,191 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-09-12 00:41:40,193 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:40,196 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-09-12 00:41:40,204 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-12 00:41:40,208 [     scc.git] DEBUG  package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-09-12 00:41:40,208 [     scc.git] DEBUG  package.json      |   2 +-
2025-09-12 00:41:40,208 [     scc.git] DEBUG  2 files changed, 138 insertions(+), 153 deletions(-)
2025-09-12 00:41:40,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:41:40,354 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-09-12 00:41:40,357 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:40,359 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-09-12 00:41:40,369 [     scc.git] DEBUG Auto-merging package-lock.json
2025-09-12 00:41:40,369 [     scc.git] DEBUG Auto-merging package.json
2025-09-12 00:41:40,370 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-12 00:41:40,373 [     scc.git] DEBUG  package-lock.json | 18 ++++++++++--------
2025-09-12 00:41:40,374 [     scc.git] DEBUG  package.json      |  2 +-
2025-09-12 00:41:40,374 [     scc.git] DEBUG  2 files changed, 11 insertions(+), 9 deletions(-)
2025-09-12 00:41:40,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:41:40,738 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-09-12 00:41:40,741 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:40,744 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-09-12 00:41:40,753 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-12 00:41:40,756 [     scc.git] DEBUG  .github/workflows/publish_pypi.yml | 2 +-
2025-09-12 00:41:40,756 [     scc.git] DEBUG  1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-12 00:41:41,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:41:41,128 [     scc.git] DEBUG Calling 'git submodule update'
2025-09-12 00:41:41,168 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:41:41,168 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:41,170 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-12 00:41:41,209 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-09-12 00:41:41,213 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f46f84d1210> has no local changes
2025-09-12 00:41:41,213 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-parade
Excluded PRs:
  - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
  - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
  - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
  - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.

Merged PRs:
  - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
  - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
  - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'

Generated by OMERO-plugins-push#530 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/)'
2025-09-12 00:41:41,220 [     scc.git] DEBUG [detached HEAD 6aa11ae] merge master -Dorg -Ssuccess-only
2025-09-12 00:41:41,220 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:41:41,220 [    scc.repo] DEBUG ## PRs found:
2025-09-12 00:41:41,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2025-09-12 00:41:42,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2025-09-12 00:41:42,197 [    scc.repo] DEBUG   # ... Include label: dependencies
2025-09-12 00:41:42,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-09-12 00:41:43,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:41:43,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-12 00:41:44,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-09-12 00:41:44,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:41:44,752 [    scc.repo] DEBUG   - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:41:44,753 [    scc.repo] DEBUG ## Branches found:
2025-09-12 00:41:44,753 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-09-12 00:41:44,753 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:41:44,753 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:44,755 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-12 00:41:44,758 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-12 00:41:44,758 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-12 00:41:44,761 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-12 00:41:44,764 [     scc.git] DEBUG Already up to date.

2025-09-12 00:41:44,764 [     scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2025-09-12 00:41:45,118 [     scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2025-09-12 00:41:45,118 [     scc.git] DEBUG  * branch            refs/pull/16/head -> FETCH_HEAD
2025-09-12 00:41:45,122 [     scc.git] DEBUG ## Unique users: []
2025-09-12 00:41:45,122 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:41:45,122 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:45,125 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2025-09-12 00:41:45,128 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:45,130 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2025-09-12 00:41:45,138 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-12 00:41:45,141 [     scc.git] DEBUG  .github/workflows/publish_pypi.yml | 2 +-
2025-09-12 00:41:45,141 [     scc.git] DEBUG  1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-12 00:41:45,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:41:45,291 [     scc.git] DEBUG Calling 'git submodule update'
2025-09-12 00:41:45,331 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:41:45,331 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:45,334 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-12 00:41:45,373 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-09-12 00:41:45,377 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f46f84ef810> has no local changes
2025-09-12 00:41:45,377 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-prometheus-tools
Already up to date.

Merged PRs:
  - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Generated by OMERO-plugins-push#530 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/)'
2025-09-12 00:41:45,384 [     scc.git] DEBUG [detached HEAD 0fa4f42] merge master -Dorg -Ssuccess-only
2025-09-12 00:41:45,384 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:41:45,384 [    scc.repo] DEBUG ## PRs found:
2025-09-12 00:41:45,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-09-12 00:41:46,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2025-09-12 00:41:46,331 [    scc.repo] DEBUG   # ... Include label: dependencies
2025-09-12 00:41:46,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-09-12 00:41:47,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:41:47,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-12 00:41:48,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-09-12 00:41:48,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2025-09-12 00:41:49,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-09-12 00:41:49,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2025-09-12 00:41:49,766 [    scc.repo] DEBUG   - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:41:50,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-09-12 00:41:50,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-09-12 00:41:51,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-12 00:41:51,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:41:52,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-12 00:41:52,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-12 00:41:53,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-09-12 00:41:53,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-12 00:41:53,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-09-12 00:41:53,985 [    scc.repo] DEBUG   - PR 33 jo-mueller 'Add roi to array functions'
2025-09-12 00:41:54,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-09-12 00:41:54,496 [    scc.repo] DEBUG ## Branches found:
2025-09-12 00:41:54,496 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-09-12 00:41:54,496 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:41:54,496 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:54,499 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-12 00:41:54,502 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-12 00:41:54,502 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-12 00:41:54,504 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-12 00:41:54,508 [     scc.git] DEBUG Already up to date.

2025-09-12 00:41:54,508 [     scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-09-12 00:41:54,786 [     scc.git] DEBUG From https://github.com/ome/omero-rois
2025-09-12 00:41:54,786 [     scc.git] DEBUG  * branch            refs/pull/33/head -> FETCH_HEAD
2025-09-12 00:41:54,790 [     scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2025-09-12 00:41:55,074 [     scc.git] DEBUG From https://github.com/ome/omero-rois
2025-09-12 00:41:55,074 [     scc.git] DEBUG  * branch            refs/pull/34/head -> FETCH_HEAD
2025-09-12 00:41:55,078 [     scc.git] DEBUG ## Unique users: []
2025-09-12 00:41:55,078 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:41:55,078 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:55,081 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-09-12 00:41:55,084 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:55,086 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-09-12 00:41:55,094 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-12 00:41:55,097 [     scc.git] DEBUG  setup.py                   |   4 +-
2025-09-12 00:41:55,097 [     scc.git] DEBUG  src/omero_rois/__init__.py |   4 +
2025-09-12 00:41:55,098 [     scc.git] DEBUG  src/omero_rois/library.py  | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-09-12 00:41:55,098 [     scc.git] DEBUG  3 files changed, 203 insertions(+), 9 deletions(-)
2025-09-12 00:41:55,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:41:55,247 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2025-09-12 00:41:55,251 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:55,253 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2025-09-12 00:41:55,261 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-12 00:41:55,264 [     scc.git] DEBUG  .github/workflows/publish_pypi.yml | 2 +-
2025-09-12 00:41:55,264 [     scc.git] DEBUG  1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-12 00:41:55,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:41:55,631 [     scc.git] DEBUG Calling 'git submodule update'
2025-09-12 00:41:55,670 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:41:55,671 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:41:55,673 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-12 00:41:55,711 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-09-12 00:41:55,715 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f46f84ed0d0> has no local changes
2025-09-12 00:41:55,715 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-rois
Excluded PRs:
  - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.

Merged PRs:
  - PR 33 jo-mueller 'Add roi to array functions'
  - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Generated by OMERO-plugins-push#530 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/)'
2025-09-12 00:41:55,722 [     scc.git] DEBUG [detached HEAD a593488] merge master -Dorg -Ssuccess-only
2025-09-12 00:41:55,722 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:41:55,722 [    scc.repo] DEBUG ## PRs found:
2025-09-12 00:41:56,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-09-12 00:41:56,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2025-09-12 00:41:56,674 [    scc.repo] DEBUG   # ... Include label: dependencies
2025-09-12 00:41:57,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-09-12 00:41:57,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:41:58,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-12 00:41:58,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-09-12 00:41:59,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:41:59,357 [    scc.repo] DEBUG   - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:41:59,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-09-12 00:42:00,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-09-12 00:42:00,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-09-12 00:42:01,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:42:01,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-09-12 00:42:02,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:42:02,392 [    scc.repo] DEBUG   - PR 14 manics 'Add pre-commit (black, flake8)'
2025-09-12 00:42:02,392 [    scc.repo] DEBUG ## Branches found:
2025-09-12 00:42:02,393 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-09-12 00:42:02,393 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:02,393 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:02,395 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-12 00:42:02,398 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-12 00:42:02,398 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-12 00:42:02,401 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-12 00:42:02,404 [     scc.git] DEBUG Already up to date.

2025-09-12 00:42:02,404 [     scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-09-12 00:42:02,698 [     scc.git] DEBUG From https://github.com/ome/omero-signup
2025-09-12 00:42:02,698 [     scc.git] DEBUG  * branch            refs/pull/14/head -> FETCH_HEAD
2025-09-12 00:42:02,702 [     scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-09-12 00:42:02,986 [     scc.git] DEBUG From https://github.com/ome/omero-signup
2025-09-12 00:42:02,986 [     scc.git] DEBUG  * branch            refs/pull/22/head -> FETCH_HEAD
2025-09-12 00:42:02,990 [     scc.git] DEBUG ## Unique users: []
2025-09-12 00:42:02,990 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:02,990 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:02,992 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-12 00:42:02,995 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:02,998 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-12 00:42:03,007 [     scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-09-12 00:42:03,007 [     scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-09-12 00:42:03,007 [     scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-09-12 00:42:03,007 [     scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-09-12 00:42:03,007 [     scc.git] DEBUG Auto-merging omero_signup/views.py
2025-09-12 00:42:03,007 [     scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-09-12 00:42:03,007 [     scc.git] DEBUG Auto-merging setup.py
2025-09-12 00:42:03,007 [     scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-09-12 00:42:03,007 [     scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-12 00:42:03,007 [     scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-12 00:42:03,010 [     scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-09-12 00:42:03,015 [     scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-09-12 00:42:03,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:03,167 [     scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-12 00:42:03,170 [     scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-09-12 00:42:03,174 [     scc.git] INFO    - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#530](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/consoleText) for more details.
Possible conflicts:
  - Upstream changes
    - omero_signup/signup_settings.py
    - omero_signup/urls.py
    - setup.py
    - omero_signup/views.py

--conflicts

2025-09-12 00:42:03,176 [  scc.config] DEBUG Found github.token
2025-09-12 00:42:03,176 [     scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-09-12 00:42:03,176 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-09-12 00:42:03,179 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:03,181 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-09-12 00:42:03,189 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-12 00:42:03,192 [     scc.git] DEBUG  .github/workflows/publish_pypi.yml | 2 +-
2025-09-12 00:42:03,192 [     scc.git] DEBUG  1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-12 00:42:03,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:03,580 [     scc.git] DEBUG Calling 'git submodule update'
2025-09-12 00:42:03,621 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:03,621 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:03,624 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-12 00:42:03,663 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-09-12 00:42:03,667 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f46f84af850> has no local changes
2025-09-12 00:42:03,667 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-signup
Already up to date.

Merged PRs:
  - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Conflicting PRs (not included):
  - PR 14 manics 'Add pre-commit (black, flake8)'

Generated by OMERO-plugins-push#530 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/)'
2025-09-12 00:42:03,674 [     scc.git] DEBUG [detached HEAD 023f0fa] merge master -Dorg -Ssuccess-only
2025-09-12 00:42:03,674 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:42:03,674 [    scc.repo] DEBUG ## PRs found:
2025-09-12 00:42:04,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-09-12 00:42:04,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-09-12 00:42:05,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-09-12 00:42:05,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:42:06,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-12 00:42:06,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-09-12 00:42:07,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:42:07,243 [    scc.repo] DEBUG   - PR 76 will-moore 'Run cli deps'
2025-09-12 00:42:07,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-09-12 00:42:08,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-09-12 00:42:08,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-09-12 00:42:09,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:42:09,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-12 00:42:10,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-09-12 00:42:10,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-09-12 00:42:11,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-09-12 00:42:11,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-09-12 00:42:12,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-09-12 00:42:12,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:42:13,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-09-12 00:42:13,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:42:13,472 [    scc.repo] DEBUG   - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-09-12 00:42:13,472 [    scc.repo] DEBUG ## Branches found:
2025-09-12 00:42:13,472 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-09-12 00:42:13,472 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:13,472 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:13,475 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-12 00:42:13,477 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-12 00:42:13,477 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-12 00:42:13,480 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-12 00:42:13,483 [     scc.git] DEBUG Already up to date.

2025-09-12 00:42:13,483 [     scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-09-12 00:42:13,780 [     scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-09-12 00:42:13,780 [     scc.git] DEBUG  * branch            refs/pull/12/head -> FETCH_HEAD
2025-09-12 00:42:13,784 [     scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-09-12 00:42:14,079 [     scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-09-12 00:42:14,079 [     scc.git] DEBUG  * branch            refs/pull/76/head -> FETCH_HEAD
2025-09-12 00:42:14,084 [     scc.git] DEBUG ## Unique users: []
2025-09-12 00:42:14,084 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:14,084 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:14,086 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-09-12 00:42:14,091 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:14,093 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-09-12 00:42:14,105 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-12 00:42:14,109 [     scc.git] DEBUG  idr-compose.yml                            |  66 ++++++++++++++
2025-09-12 00:42:14,109 [     scc.git] DEBUG  idr-haproxy.yml                            |  58 +++++++++++++
2025-09-12 00:42:14,109 [     scc.git] DEBUG  idr/40-ansible.sh                          |   7 ++
2025-09-12 00:42:14,109 [     scc.git] DEBUG  idr/70-reset-password.sh                   |   1 +
2025-09-12 00:42:14,109 [     scc.git] DEBUG  idr/nginx/conf.d/default.conf              |   1 +
2025-09-12 00:42:14,109 [     scc.git] DEBUG  idr/nginx/conf.d/example_ssl.conf          |   1 +
2025-09-12 00:42:14,110 [     scc.git] DEBUG  idr/nginx/conf.d/proxy-cache.conf          |  53 +++++++++++
2025-09-12 00:42:14,110 [     scc.git] DEBUG  idr/nginx/conf.d/proxy-cachebuster.conf    | 114 ++++++++++++++++++++++++
2025-09-12 00:42:14,110 [     scc.git] DEBUG  idr/nginx/conf.d/proxy-default.conf        | 135 +++++++++++++++++++++++++++++
2025-09-12 00:42:14,110 [     scc.git] DEBUG  idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-09-12 00:42:14,110 [     scc.git] DEBUG  idr/nginx/conf.d/proxy-redirect.conf       |  15 ++++
2025-09-12 00:42:14,111 [     scc.git] DEBUG  idr/nginx/conf.d/proxy-upstream.conf       |  13 +++
2025-09-12 00:42:14,111 [     scc.git] DEBUG  idr/nginx/conf.d/proxy-v0.conf             |  26 ++++++
2025-09-12 00:42:14,111 [     scc.git] DEBUG  idr/nginx/conf.d/proxy-v1.conf             |  30 +++++++
2025-09-12 00:42:14,111 [     scc.git] DEBUG  idr/nginx/conf.d/proxy-v2.conf             |  30 +++++++
2025-09-12 00:42:14,111 [     scc.git] DEBUG  idr/nginx/conf.d/proxy-websockets.conf     |   6 ++
2025-09-12 00:42:14,111 [     scc.git] DEBUG  idr/nginx/nginx.conf                       |  53 +++++++++++
2025-09-12 00:42:14,111 [     scc.git] DEBUG  idr/omero/Dockerfile                       |   3 +
2025-09-12 00:42:14,111 [     scc.git] DEBUG  idr/omero/playbook.yml                     |  41 +++++++++
2025-09-12 00:42:14,111 [     scc.git] DEBUG  idr/redirect/Dockerfile                    |   6 ++
2025-09-12 00:42:14,111 [     scc.git] DEBUG  idr/web/Dockerfile                         |   5 ++
2025-09-12 00:42:14,111 [     scc.git] DEBUG  idr/web/playbook.yml                       |  45 ++++++++++
2025-09-12 00:42:14,111 [     scc.git] DEBUG  22 files changed, 824 insertions(+)
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr-compose.yml
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr-haproxy.yml
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100755 idr/40-ansible.sh
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100755 idr/70-reset-password.sh
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/nginx/conf.d/default.conf
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/nginx/nginx.conf
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/omero/Dockerfile
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/omero/playbook.yml
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/redirect/Dockerfile
2025-09-12 00:42:14,111 [     scc.git] DEBUG  create mode 100644 idr/web/Dockerfile
2025-09-12 00:42:14,112 [     scc.git] DEBUG  create mode 100644 idr/web/playbook.yml
2025-09-12 00:42:14,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:14,249 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-09-12 00:42:14,253 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:14,255 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-09-12 00:42:14,265 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-12 00:42:14,267 [     scc.git] DEBUG  docker | 1 +
2025-09-12 00:42:14,268 [     scc.git] DEBUG  1 file changed, 1 insertion(+)
2025-09-12 00:42:14,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:14,652 [     scc.git] DEBUG Calling 'git submodule update'
2025-09-12 00:42:14,693 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:14,694 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:14,696 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-12 00:42:14,734 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-09-12 00:42:14,738 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f46f84acdd0> has no local changes
2025-09-12 00:42:14,739 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: openmicroscopy/omero-test-infra
Excluded PRs:
  - PR 75 marimeireles 'Microservices' (user: marimeireles)
  - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
  - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.

Merged PRs:
  - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
  - PR 76 will-moore 'Run cli deps'

Generated by OMERO-plugins-push#530 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/)'
2025-09-12 00:42:14,746 [     scc.git] DEBUG [detached HEAD 2b3dc9c] merge master -Dorg -Ssuccess-only
2025-09-12 00:42:14,747 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:42:14,747 [    scc.repo] DEBUG ## PRs found:
2025-09-12 00:42:15,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2025-09-12 00:42:15,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2025-09-12 00:42:15,658 [    scc.repo] DEBUG   # ... Include label: dependencies
2025-09-12 00:42:16,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-09-12 00:42:16,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:42:17,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-12 00:42:17,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-09-12 00:42:18,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:42:18,168 [    scc.repo] DEBUG   - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:42:18,168 [    scc.repo] DEBUG ## Branches found:
2025-09-12 00:42:18,168 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-09-12 00:42:18,168 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:18,168 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:18,171 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-12 00:42:18,173 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-12 00:42:18,173 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-12 00:42:18,176 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-12 00:42:18,179 [     scc.git] DEBUG Already up to date.

2025-09-12 00:42:18,179 [     scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-09-12 00:42:18,464 [     scc.git] DEBUG From https://github.com/ome/omero-upload
2025-09-12 00:42:18,464 [     scc.git] DEBUG  * branch            refs/pull/14/head -> FETCH_HEAD
2025-09-12 00:42:18,468 [     scc.git] DEBUG ## Unique users: []
2025-09-12 00:42:18,468 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:18,468 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:18,470 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-09-12 00:42:18,474 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:18,476 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-09-12 00:42:18,484 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-12 00:42:18,488 [     scc.git] DEBUG  .github/workflows/publish_pypi.yml | 2 +-
2025-09-12 00:42:18,488 [     scc.git] DEBUG  1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-12 00:42:18,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:18,637 [     scc.git] DEBUG Calling 'git submodule update'
2025-09-12 00:42:18,678 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:18,679 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:18,681 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-12 00:42:18,721 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-09-12 00:42:18,725 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f46f84bb3d0> has no local changes
2025-09-12 00:42:18,725 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-upload
Already up to date.

Merged PRs:
  - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Generated by OMERO-plugins-push#530 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/)'
2025-09-12 00:42:18,731 [     scc.git] DEBUG [detached HEAD 7196952] merge master -Dorg -Ssuccess-only
2025-09-12 00:42:18,732 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:42:18,732 [    scc.repo] DEBUG ## PRs found:
2025-09-12 00:42:19,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2025-09-12 00:42:19,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2025-09-12 00:42:19,612 [    scc.repo] DEBUG   # ... Include label: dependencies
2025-09-12 00:42:20,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-09-12 00:42:20,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:42:21,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-12 00:42:21,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-09-12 00:42:22,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:42:22,119 [    scc.repo] DEBUG   - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:42:22,119 [    scc.repo] DEBUG ## Branches found:
2025-09-12 00:42:22,119 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-09-12 00:42:22,119 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:22,119 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:22,123 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-12 00:42:22,125 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-12 00:42:22,125 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-12 00:42:22,128 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-12 00:42:22,137 [     scc.git] DEBUG Updating deab817..160d894

2025-09-12 00:42:22,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-09-12 00:42:22,830 [     scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-09-12 00:42:23,118 [     scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2025-09-12 00:42:23,118 [     scc.git] DEBUG  * branch            refs/pull/22/head -> FETCH_HEAD
2025-09-12 00:42:23,123 [     scc.git] DEBUG ## Unique users: []
2025-09-12 00:42:23,123 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:23,123 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:23,125 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-09-12 00:42:23,129 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:23,131 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-09-12 00:42:23,139 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-12 00:42:23,142 [     scc.git] DEBUG  .github/workflows/publish_pypi.yml | 2 +-
2025-09-12 00:42:23,142 [     scc.git] DEBUG  1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-12 00:42:23,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:23,287 [     scc.git] DEBUG Calling 'git submodule update'
2025-09-12 00:42:23,328 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:23,329 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:23,331 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-12 00:42:23,371 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-09-12 00:42:23,375 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f46f84f2e50> has no local changes
2025-09-12 00:42:23,375 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
  - PR 20 jburel 'Build'

Merged PRs:
  - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Generated by OMERO-plugins-push#530 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/)'
2025-09-12 00:42:23,382 [     scc.git] DEBUG [detached HEAD 0079daf] merge master -Dorg -Ssuccess-only
2025-09-12 00:42:23,382 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:42:23,382 [     scc.git] INFO  Overriding base-branch from master to main
2025-09-12 00:42:23,382 [    scc.repo] DEBUG ## PRs found:
2025-09-12 00:42:23,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-09-12 00:42:24,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-09-12 00:42:24,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2025-09-12 00:42:25,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-09-12 00:42:25,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:42:26,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-12 00:42:26,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-09-12 00:42:27,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:42:27,296 [    scc.repo] DEBUG   - PR 21 will-moore 'Web zarr import'
2025-09-12 00:42:27,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-09-12 00:42:28,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-09-12 00:42:28,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-09-12 00:42:29,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-09-12 00:42:29,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:42:30,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-09-12 00:42:30,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:42:30,754 [    scc.repo] DEBUG   - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-09-12 00:42:30,754 [    scc.repo] DEBUG ## Branches found:
2025-09-12 00:42:30,754 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-09-12 00:42:30,754 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:30,754 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:30,757 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-09-12 00:42:30,760 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-12 00:42:30,760 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-09-12 00:42:30,764 [     scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-09-12 00:42:30,772 [     scc.git] DEBUG Updating 8f3c313..00e0207

2025-09-12 00:42:31,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2025-09-12 00:42:31,464 [     scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-09-12 00:42:31,749 [     scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-12 00:42:31,749 [     scc.git] DEBUG  * branch            refs/pull/10/head -> FETCH_HEAD
2025-09-12 00:42:31,754 [     scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-09-12 00:42:32,319 [     scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-12 00:42:32,319 [     scc.git] DEBUG  * branch            refs/pull/21/head -> FETCH_HEAD
2025-09-12 00:42:32,322 [     scc.git] DEBUG ## Unique users: []
2025-09-12 00:42:32,322 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:32,322 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:32,324 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-12 00:42:32,327 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:32,330 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-12 00:42:32,338 [     scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-09-12 00:42:32,339 [     scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-09-12 00:42:32,339 [     scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-09-12 00:42:32,339 [     scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-12 00:42:32,339 [     scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-12 00:42:32,342 [     scc.git] DEBUG Calling 'git reset --hard 00e02072dc29b04eba14c080ca8a0175a1499c15'
2025-09-12 00:42:32,346 [     scc.git] DEBUG HEAD is now at 00e0207 Merge pull request #20 from will-moore/zarr_python_v3
2025-09-12 00:42:32,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:32,482 [     scc.git] DEBUG Calling 'git merge-base 00e02072dc29b04eba14c080ca8a0175a1499c15 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-12 00:42:32,485 [     scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..00e02072dc29b04eba14c080ca8a0175a1499c15'
2025-09-12 00:42:32,488 [     scc.git] INFO    - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#530](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/consoleText) for more details.
Possible conflicts:
  - Upstream changes
    - omero_web_zarr/urls.py

--conflicts

2025-09-12 00:42:32,490 [  scc.config] DEBUG Found github.token
2025-09-12 00:42:32,491 [     scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-09-12 00:42:32,491 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-09-12 00:42:32,494 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:32,496 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-09-12 00:42:32,506 [     scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-09-12 00:42:32,507 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-12 00:42:32,511 [     scc.git] DEBUG  README.rst                                         |   3 +
2025-09-12 00:42:32,511 [     scc.git] DEBUG  .../templates/omero_web_zarr/zarr_import.html      | 358 +++++++++++++++++++++
2025-09-12 00:42:32,511 [     scc.git] DEBUG  omero_web_zarr/urls.py                             |   2 +
2025-09-12 00:42:32,511 [     scc.git] DEBUG  omero_web_zarr/views.py                            |  43 ++-
2025-09-12 00:42:32,511 [     scc.git] DEBUG  setup.py                                           |   5 +-
2025-09-12 00:42:32,511 [     scc.git] DEBUG  5 files changed, 409 insertions(+), 2 deletions(-)
2025-09-12 00:42:32,511 [     scc.git] DEBUG  create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-09-12 00:42:32,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:32,869 [     scc.git] DEBUG Calling 'git submodule update'
2025-09-12 00:42:32,911 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:32,911 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:32,913 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-12 00:42:32,954 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-09-12 00:42:32,958 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f46f84f91d0> has no local changes
2025-09-12 00:42:32,958 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-web-zarr
Excluded PRs:
  - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..00e0207
Previously merged:
  - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'

Merged PRs:
  - PR 21 will-moore 'Web zarr import'

Conflicting PRs (not included):
  - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'

Generated by OMERO-plugins-push#530 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/)'
2025-09-12 00:42:32,965 [     scc.git] DEBUG [detached HEAD 5bdafe6] merge master -Dorg -Ssuccess-only
2025-09-12 00:42:32,965 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:42:32,966 [    scc.repo] DEBUG ## PRs found:
2025-09-12 00:42:33,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2025-09-12 00:42:33,849 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2025-09-12 00:42:33,850 [    scc.repo] DEBUG   # ... Include label: dependencies
2025-09-12 00:42:34,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-09-12 00:42:35,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:42:35,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-12 00:42:36,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-09-12 00:42:36,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:42:36,581 [    scc.repo] DEBUG   - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:42:36,581 [    scc.repo] DEBUG ## Branches found:
2025-09-12 00:42:36,581 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-09-12 00:42:36,581 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:36,581 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:36,584 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-12 00:42:36,587 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-12 00:42:36,587 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-12 00:42:36,590 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-12 00:42:36,593 [     scc.git] DEBUG Already up to date.

2025-09-12 00:42:36,593 [     scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2025-09-12 00:42:36,893 [     scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2025-09-12 00:42:36,894 [     scc.git] DEBUG  * branch            refs/pull/25/head -> FETCH_HEAD
2025-09-12 00:42:36,898 [     scc.git] DEBUG ## Unique users: []
2025-09-12 00:42:36,898 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:36,898 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:36,900 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-09-12 00:42:36,903 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:36,906 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-09-12 00:42:36,914 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-12 00:42:36,917 [     scc.git] DEBUG  .github/workflows/publish_pypi.yml | 2 +-
2025-09-12 00:42:36,917 [     scc.git] DEBUG  1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-12 00:42:37,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:37,056 [     scc.git] DEBUG Calling 'git submodule update'
2025-09-12 00:42:37,100 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:37,100 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:37,102 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-12 00:42:37,142 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-09-12 00:42:37,146 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f46f8598b50> has no local changes
2025-09-12 00:42:37,146 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: openmicroscopy/omero-weberror
Already up to date.

Merged PRs:
  - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Generated by OMERO-plugins-push#530 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/)'
2025-09-12 00:42:37,153 [     scc.git] DEBUG [detached HEAD 9889068] merge master -Dorg -Ssuccess-only
2025-09-12 00:42:37,153 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:42:37,153 [    scc.repo] DEBUG ## PRs found:
2025-09-12 00:42:37,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2025-09-12 00:42:38,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2025-09-12 00:42:38,082 [    scc.repo] DEBUG   # ... Include label: dependencies
2025-09-12 00:42:38,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-09-12 00:42:39,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:42:39,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-12 00:42:40,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-09-12 00:42:40,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:42:40,713 [    scc.repo] DEBUG   - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:42:40,713 [    scc.repo] DEBUG ## Branches found:
2025-09-12 00:42:40,713 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-09-12 00:42:40,713 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:40,713 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:40,716 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-12 00:42:40,718 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-12 00:42:40,718 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-12 00:42:40,721 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-12 00:42:40,724 [     scc.git] DEBUG Already up to date.

2025-09-12 00:42:40,724 [     scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2025-09-12 00:42:41,022 [     scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2025-09-12 00:42:41,022 [     scc.git] DEBUG  * branch            refs/pull/37/head -> FETCH_HEAD
2025-09-12 00:42:41,026 [     scc.git] DEBUG ## Unique users: []
2025-09-12 00:42:41,026 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:41,026 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:41,029 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-09-12 00:42:41,032 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:41,034 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-09-12 00:42:41,041 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-12 00:42:41,045 [     scc.git] DEBUG  .github/workflows/publish_pypi.yml | 2 +-
2025-09-12 00:42:41,045 [     scc.git] DEBUG  1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-12 00:42:41,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:41,186 [     scc.git] DEBUG Calling 'git submodule update'
2025-09-12 00:42:41,227 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:41,227 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:41,229 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-12 00:42:41,268 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-09-12 00:42:41,272 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f46f84ba490> has no local changes
2025-09-12 00:42:41,272 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: openmicroscopy/omero-webtest
Already up to date.

Merged PRs:
  - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Generated by OMERO-plugins-push#530 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/)'
2025-09-12 00:42:41,279 [     scc.git] DEBUG [detached HEAD 9bb7e77] merge master -Dorg -Ssuccess-only
2025-09-12 00:42:41,279 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:42:41,279 [    scc.repo] DEBUG ## PRs found:
2025-09-12 00:42:41,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-09-12 00:42:42,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-09-12 00:42:42,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-09-12 00:42:43,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-09-12 00:42:43,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:42:44,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-09-12 00:42:44,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:42:44,567 [    scc.repo] DEBUG   - PR 100 dominikl 'Run tests properly'
2025-09-12 00:42:44,567 [    scc.repo] DEBUG ## Branches found:
2025-09-12 00:42:44,567 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-09-12 00:42:44,567 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:44,567 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:44,570 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-12 00:42:44,573 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-12 00:42:44,573 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-12 00:42:44,576 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-12 00:42:44,579 [     scc.git] DEBUG Already up to date.

2025-09-12 00:42:44,579 [     scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-09-12 00:42:44,880 [     scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-09-12 00:42:44,880 [     scc.git] DEBUG  * branch            refs/pull/100/head -> FETCH_HEAD
2025-09-12 00:42:44,885 [     scc.git] DEBUG ## Unique users: []
2025-09-12 00:42:44,885 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:44,885 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:44,888 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-12 00:42:44,891 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:44,893 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-12 00:42:44,902 [     scc.git] DEBUG Auto-merging Dockerfile
2025-09-12 00:42:44,902 [     scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-09-12 00:42:44,902 [     scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-12 00:42:44,902 [     scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-12 00:42:44,905 [     scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-09-12 00:42:44,910 [     scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-09-12 00:42:45,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:45,053 [     scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-12 00:42:45,056 [     scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-09-12 00:42:45,059 [     scc.git] INFO    - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#530](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/consoleText) for more details.
Possible conflicts:
  - Upstream changes
    - Dockerfile

--conflicts

2025-09-12 00:42:45,061 [  scc.config] DEBUG Found github.token
2025-09-12 00:42:45,061 [     scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-09-12 00:42:45,061 [     scc.git] DEBUG Calling 'git submodule update'
2025-09-12 00:42:45,104 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:45,104 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:45,106 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-12 00:42:45,146 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-09-12 00:42:45,150 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f46f8596f10> has no local changes
2025-09-12 00:42:45,150 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/rOMERO-gateway
Already up to date.

Conflicting PRs (not included):
  - PR 100 dominikl 'Run tests properly'

Generated by OMERO-plugins-push#530 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/)'
2025-09-12 00:42:45,157 [     scc.git] DEBUG [detached HEAD 99f7f7a] merge master -Dorg -Ssuccess-only
2025-09-12 00:42:45,157 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:42:45,157 [     scc.git] INFO  Overriding base-branch from master to develop
2025-09-12 00:42:45,157 [    scc.repo] DEBUG ## PRs found:
2025-09-12 00:42:45,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-09-12 00:42:46,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-09-12 00:42:46,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-09-12 00:42:47,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-09-12 00:42:47,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:42:47,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-12 00:42:48,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-09-12 00:42:48,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:42:48,898 [    scc.repo] DEBUG   - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-09-12 00:42:49,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-09-12 00:42:49,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-09-12 00:42:50,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-09-12 00:42:50,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-12 00:42:51,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-09-12 00:42:51,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-09-12 00:42:51,660 [    scc.repo] DEBUG   - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-09-12 00:42:52,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-09-12 00:42:52,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-09-12 00:42:53,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-09-12 00:42:53,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-09-12 00:42:53,519 [    scc.repo] DEBUG ## Branches found:
2025-09-12 00:42:53,519 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-09-12 00:42:53,520 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:53,520 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:53,522 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-09-12 00:42:53,525 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-12 00:42:53,525 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-09-12 00:42:53,528 [     scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-09-12 00:42:53,540 [     scc.git] DEBUG Updating 4b4c755..03b9116

2025-09-12 00:42:54,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2025-09-12 00:42:54,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-09-12 00:42:55,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-09-12 00:42:55,583 [     scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-09-12 00:42:55,888 [     scc.git] DEBUG From https://github.com/ome/scripts
2025-09-12 00:42:55,888 [     scc.git] DEBUG  * branch            refs/pull/202/head -> FETCH_HEAD
2025-09-12 00:42:55,893 [     scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-09-12 00:42:56,194 [     scc.git] DEBUG From https://github.com/ome/scripts
2025-09-12 00:42:56,194 [     scc.git] DEBUG  * branch            refs/pull/223/head -> FETCH_HEAD
2025-09-12 00:42:56,199 [     scc.git] DEBUG ## Unique users: []
2025-09-12 00:42:56,199 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:56,199 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:56,201 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-12 00:42:56,207 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:56,209 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-12 00:42:56,221 [     scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19.  Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-09-12 00:42:56,221 [     scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-12 00:42:56,222 [     scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-12 00:42:56,224 [     scc.git] DEBUG Calling 'git reset --hard 03b9116196e1a799dd18a666559613d912be01a5'
2025-09-12 00:42:56,229 [     scc.git] DEBUG HEAD is now at 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0
2025-09-12 00:42:56,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:56,372 [     scc.git] DEBUG Calling 'git merge-base 03b9116196e1a799dd18a666559613d912be01a5 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-12 00:42:56,378 [     scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..03b9116196e1a799dd18a666559613d912be01a5'
2025-09-12 00:42:56,382 [     scc.git] INFO    - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#530](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/consoleText) for more details.
Possible conflicts:
  - Upstream changes
    - omero/annotation_scripts/KeyVal_to_csv.py

--conflicts

2025-09-12 00:42:56,384 [  scc.config] DEBUG Found github.token
2025-09-12 00:42:56,384 [     scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-09-12 00:42:56,384 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-09-12 00:42:56,389 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:56,392 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-09-12 00:42:56,402 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-12 00:42:56,405 [     scc.git] DEBUG  omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-09-12 00:42:56,405 [     scc.git] DEBUG  1 file changed, 8 insertions(+), 1 deletion(-)
2025-09-12 00:42:56,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:56,766 [     scc.git] DEBUG Calling 'git submodule update'
2025-09-12 00:42:56,808 [     scc.git] DEBUG Get sha1 of %s
2025-09-12 00:42:56,808 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-12 00:42:56,810 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-12 00:42:56,850 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-09-12 00:42:56,854 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f46f83a6390> has no local changes
2025-09-12 00:42:56,854 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/scripts
Excluded PRs:
  - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
  - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..03b9116
Previously merged:
  - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
  - PR 227 jburel 'Replace tostring by tobytes'
  - PR 225 will-moore 'Fix param names and assertion texts in tests'

Merged PRs:
  - PR 223 will-moore 'don't attempt ROI stats on big images'

Conflicting PRs (not included):
  - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'

Generated by OMERO-plugins-push#530 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/)'
2025-09-12 00:42:56,861 [     scc.git] DEBUG [detached HEAD d76b997] merge master -Dorg -Ssuccess-only
2025-09-12 00:42:56,861 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:42:56,861 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-12 00:42:56,939 [  scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-09-12 00:42:57,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:57,176 [  scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-09-12 00:42:57,178 [  scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-09-12 00:42:57,564 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:57,569 [  scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-09-12 00:42:57,571 [  scc.config] DEBUG Found submodule.omero-cli-render.url
2025-09-12 00:42:57,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:57,959 [  scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-09-12 00:42:57,961 [  scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-09-12 00:42:58,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:58,362 [  scc.config] DEBUG Found submodule.omero-figure.url
2025-09-12 00:42:58,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:58,751 [  scc.config] DEBUG Found submodule.omero-figure.branch
2025-09-12 00:42:58,753 [  scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-09-12 00:42:59,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:59,147 [  scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-09-12 00:42:59,150 [  scc.config] DEBUG Found submodule.omero-gallery.url
2025-09-12 00:42:59,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:59,546 [  scc.config] DEBUG Found submodule.omero-gallery.branch
2025-09-12 00:42:59,548 [  scc.config] DEBUG Found submodule.omero-iviewer.url
2025-09-12 00:42:59,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:42:59,943 [  scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-09-12 00:42:59,945 [  scc.config] DEBUG Found submodule.omero-mapr.url
2025-09-12 00:43:00,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:43:00,336 [  scc.config] DEBUG Found submodule.omero-mapr.branch
2025-09-12 00:43:00,338 [  scc.config] DEBUG Found submodule.omero-metadata.url
2025-09-12 00:43:00,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:43:00,726 [  scc.config] DEBUG Found submodule.omero-metadata.branch
2025-09-12 00:43:00,728 [  scc.config] DEBUG Found submodule.omero-parade.url
2025-09-12 00:43:01,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:43:01,124 [  scc.config] DEBUG Found submodule.omero-parade.branch
2025-09-12 00:43:01,126 [  scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-09-12 00:43:01,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:43:01,548 [  scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-09-12 00:43:01,550 [  scc.config] DEBUG Found submodule.omero-rois.url
2025-09-12 00:43:01,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:43:01,947 [  scc.config] DEBUG Found submodule.omero-signup.url
2025-09-12 00:43:02,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:43:02,359 [  scc.config] DEBUG Found submodule.omero-test-infra.url
2025-09-12 00:43:02,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:43:02,748 [  scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-09-12 00:43:02,750 [  scc.config] DEBUG Found submodule.omero-upload.url
2025-09-12 00:43:03,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:43:03,137 [  scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-09-12 00:43:03,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:43:03,531 [  scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-09-12 00:43:03,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:43:03,923 [  scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-09-12 00:43:03,925 [  scc.config] DEBUG Found submodule.omero-weberror.url
2025-09-12 00:43:04,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:43:04,324 [  scc.config] DEBUG Found submodule.omero-weberror.branch
2025-09-12 00:43:04,326 [  scc.config] DEBUG Found submodule.omero-webtest.url
2025-09-12 00:43:04,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:43:04,725 [  scc.config] DEBUG Found submodule.omero-webtest.branch
2025-09-12 00:43:04,727 [  scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-09-12 00:43:05,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:43:05,120 [  scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-09-12 00:43:05,122 [  scc.config] DEBUG Found submodule.scripts.url
2025-09-12 00:43:05,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-12 00:43:05,525 [  scc.config] DEBUG Found submodule.scripts.branch
2025-09-12 00:43:05,525 [     scc.git] DEBUG Calling 'git status --porcelain'
2025-09-12 00:43:05,620 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f46f9896890> has local changes
2025-09-12 00:43:05,620 [     scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only

Repository: ome/omero-plugins
Already up to date.

Merged PRs:
  - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
  - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
  - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'

Repository: ome/minimal-omero-client
Already up to date.


Repository: ome/omero-cli-duplicate
Excluded PRs:
  - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.

Merged PRs:
  - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: ome/omero-cli-render
Excluded PRs:
  - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
  - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.

Merged PRs:
  - PR 59 will-moore 'Apply settings to Plate'
  - PR 69 dominikl 'Fix help text for impo/export commands'
  - PR 71 dominikl 'Escape slash character in image names'
  - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: ome/omero-cli-zarr
Excluded PRs:
  - PR 174 will-moore 'Skip wells' (stage: draft)
  - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
  - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
  - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
  - PR 167 dominikl 'Add extinfo command' (stage: draft)
  - PR 166 will-moore 'Downsample scale option' (stage: draft)
  - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
  - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..f7eea7c
Previously merged:
  - PR 179 will-moore 'Changelog 0.6.0'
  - PR 177 jburel 'Replace fromstring by frombuffer'
  - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
  - PR 147 will-moore 'Name option'
  - PR 173 will-moore 'Add test_export_plate_polygons()'
  - PR 171 will-moore 'Initial addition of integration tests'
  - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'

Merged PRs:
  - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
  - PR 180 will-moore 'Register command'

Repository: ome/omero-figure
Excluded PRs:
  - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
  - PR 619 will-moore 'OME-Zarr support' (stage: draft)
  - PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..d2c6f5bc
Previously merged:
  - PR 638 Rdornier 'Fix arrow opacity'
  - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
  - PR 635 dependabot[bot] 'Bump esbuild and vite'
  - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
  - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'

Merged PRs:
  - PR 600 Rdornier 'Label on rois'
  - PR 605 Tom-TBT 'Colorbar feature'
  - PR 610 will-moore 'Add docs/contributing.rst'
  - PR 612 will-moore 'Script version'

Conflicting PRs (not included):
  - PR 616 Rdornier 'Fix labels around border'
  - PR 630 will-moore 'Fix color and position for ALL new panel insets'
  - PR 637 Rdornier 'Fix scalebar position'
  - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6'

Repository: ome/omero-fpbioimage
Already up to date.

Merged PRs:
  - PR 18 jburel 'default  size z value'
  - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: ome/omero-gallery
Already up to date.

Merged PRs:
  - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
  - PR 114 dependabot[bot] 'Bump tar and fsevents'
  - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
  - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'

Conflicting PRs (not included):
  - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
  - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
  - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'

Repository: ome/omero-iviewer
Excluded PRs:
  - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
  - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
  - PR 420 will-moore 'Add release process to README' (exclude comment)
  - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
  - PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
  - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'

Merged PRs:
  - PR 460 will-moore 'Channel min spinner fix'
  - PR 465 will-moore 'Save as Figure'
  - PR 471 will-moore 'Z projection disabled tooltip'
  - PR 499 dependabot[bot] 'Bump nanoid and mocha'

Conflicting PRs (not included):
  - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'

Repository: ome/omero-mapr
Excluded PRs:
  - PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.

Merged PRs:
  - PR 74 will-moore 'mapr extension of webclient'
  - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'

Conflicting PRs (not included):
  - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
  - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'

Conflicting PRs (not included):
  - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
  - PR 64 will-moore 'Support images_by_name for Screen and Plate'

Repository: ome/omero-parade
Excluded PRs:
  - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
  - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
  - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
  - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.

Merged PRs:
  - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
  - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
  - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'

Repository: ome/omero-prometheus-tools
Already up to date.

Merged PRs:
  - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: ome/omero-rois
Excluded PRs:
  - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.

Merged PRs:
  - PR 33 jo-mueller 'Add roi to array functions'
  - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: ome/omero-signup
Already up to date.

Merged PRs:
  - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Conflicting PRs (not included):
  - PR 14 manics 'Add pre-commit (black, flake8)'

Repository: openmicroscopy/omero-test-infra
Excluded PRs:
  - PR 75 marimeireles 'Microservices' (user: marimeireles)
  - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
  - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.

Merged PRs:
  - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
  - PR 76 will-moore 'Run cli deps'

Repository: ome/omero-upload
Already up to date.

Merged PRs:
  - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
  - PR 20 jburel 'Build'

Merged PRs:
  - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: ome/omero-web-zarr
Excluded PRs:
  - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..00e0207
Previously merged:
  - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'

Merged PRs:
  - PR 21 will-moore 'Web zarr import'

Conflicting PRs (not included):
  - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'

Repository: openmicroscopy/omero-weberror
Already up to date.

Merged PRs:
  - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: openmicroscopy/omero-webtest
Already up to date.

Merged PRs:
  - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'

Repository: ome/rOMERO-gateway
Already up to date.

Conflicting PRs (not included):
  - PR 100 dominikl 'Run tests properly'

Repository: ome/scripts
Excluded PRs:
  - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
  - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..03b9116
Previously merged:
  - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
  - PR 227 jburel 'Replace tostring by tobytes'
  - PR 225 will-moore 'Fix param names and assertion texts in tests'

Merged PRs:
  - PR 223 will-moore 'don't attempt ROI stats on big images'

Conflicting PRs (not included):
  - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'

Generated by OMERO-plugins-push#530 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/530/)'
2025-09-12 00:43:05,633 [     scc.git] DEBUG [detached HEAD 7c9b567] merge master -Dorg -Ssuccess-only
2025-09-12 00:43:05,633 [     scc.git] DEBUG  23 files changed, 44 insertions(+), 44 deletions(-)
2025-09-12 00:43:05,633 [   scc.merge] INFO  Repository: ome/omero-plugins
2025-09-12 00:43:05,633 [   scc.merge] INFO  Already up to date.
2025-09-12 00:43:05,634 [   scc.merge] INFO  
2025-09-12 00:43:05,634 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,634 [   scc.merge] INFO    - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-09-12 00:43:05,634 [   scc.merge] INFO    - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-09-12 00:43:05,634 [   scc.merge] INFO    - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-09-12 00:43:05,634 [   scc.merge] INFO  
2025-09-12 00:43:05,634 [   scc.merge] INFO  Repository: ome/minimal-omero-client
2025-09-12 00:43:05,634 [   scc.merge] INFO  Already up to date.
2025-09-12 00:43:05,634 [   scc.merge] INFO  
2025-09-12 00:43:05,634 [   scc.merge] INFO  
2025-09-12 00:43:05,634 [   scc.merge] INFO  Repository: ome/omero-cli-duplicate
2025-09-12 00:43:05,634 [   scc.merge] INFO  Excluded PRs:
2025-09-12 00:43:05,634 [   scc.merge] INFO    - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-09-12 00:43:05,634 [   scc.merge] INFO  Already up to date.
2025-09-12 00:43:05,634 [   scc.merge] INFO  
2025-09-12 00:43:05,634 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,634 [   scc.merge] INFO    - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:43:05,634 [   scc.merge] INFO  
2025-09-12 00:43:05,634 [   scc.merge] INFO  Repository: ome/omero-cli-render
2025-09-12 00:43:05,634 [   scc.merge] INFO  Excluded PRs:
2025-09-12 00:43:05,634 [   scc.merge] INFO    - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-09-12 00:43:05,634 [   scc.merge] INFO    - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-09-12 00:43:05,634 [   scc.merge] INFO  Already up to date.
2025-09-12 00:43:05,634 [   scc.merge] INFO  
2025-09-12 00:43:05,634 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,634 [   scc.merge] INFO    - PR 59 will-moore 'Apply settings to Plate'
2025-09-12 00:43:05,634 [   scc.merge] INFO    - PR 69 dominikl 'Fix help text for impo/export commands'
2025-09-12 00:43:05,634 [   scc.merge] INFO    - PR 71 dominikl 'Escape slash character in image names'
2025-09-12 00:43:05,634 [   scc.merge] INFO    - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:43:05,634 [   scc.merge] INFO  
2025-09-12 00:43:05,634 [   scc.merge] INFO  Repository: ome/omero-cli-zarr
2025-09-12 00:43:05,634 [   scc.merge] INFO  Excluded PRs:
2025-09-12 00:43:05,634 [   scc.merge] INFO    - PR 174 will-moore 'Skip wells' (stage: draft)
2025-09-12 00:43:05,634 [   scc.merge] INFO    - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
2025-09-12 00:43:05,634 [   scc.merge] INFO    - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-09-12 00:43:05,635 [   scc.merge] INFO  Updating 11d3587..f7eea7c
2025-09-12 00:43:05,635 [   scc.merge] INFO  Previously merged:
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 179 will-moore 'Changelog 0.6.0'
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 177 jburel 'Replace fromstring by frombuffer'
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 147 will-moore 'Name option'
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 171 will-moore 'Initial addition of integration tests'
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-12 00:43:05,635 [   scc.merge] INFO  
2025-09-12 00:43:05,635 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 180 will-moore 'Register command'
2025-09-12 00:43:05,635 [   scc.merge] INFO  
2025-09-12 00:43:05,635 [   scc.merge] INFO  Repository: ome/omero-figure
2025-09-12 00:43:05,635 [   scc.merge] INFO  Excluded PRs:
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-09-12 00:43:05,635 [   scc.merge] INFO  Updating 9cc36cde..d2c6f5bc
2025-09-12 00:43:05,635 [   scc.merge] INFO  Previously merged:
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 638 Rdornier 'Fix arrow opacity'
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-12 00:43:05,635 [   scc.merge] INFO  
2025-09-12 00:43:05,635 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 600 Rdornier 'Label on rois'
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 605 Tom-TBT 'Colorbar feature'
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 610 will-moore 'Add docs/contributing.rst'
2025-09-12 00:43:05,635 [   scc.merge] INFO    - PR 612 will-moore 'Script version'
2025-09-12 00:43:05,635 [   scc.merge] INFO  
2025-09-12 00:43:05,636 [   scc.merge] INFO  Conflicting PRs (not included):
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 616 Rdornier 'Fix labels around border'
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 637 Rdornier 'Fix scalebar position'
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6'
2025-09-12 00:43:05,636 [   scc.merge] INFO  
2025-09-12 00:43:05,636 [   scc.merge] INFO  Repository: ome/omero-fpbioimage
2025-09-12 00:43:05,636 [   scc.merge] INFO  Already up to date.
2025-09-12 00:43:05,636 [   scc.merge] INFO  
2025-09-12 00:43:05,636 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 18 jburel 'default  size z value'
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:43:05,636 [   scc.merge] INFO  
2025-09-12 00:43:05,636 [   scc.merge] INFO  Repository: ome/omero-gallery
2025-09-12 00:43:05,636 [   scc.merge] INFO  Already up to date.
2025-09-12 00:43:05,636 [   scc.merge] INFO  
2025-09-12 00:43:05,636 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-09-12 00:43:05,636 [   scc.merge] INFO  
2025-09-12 00:43:05,636 [   scc.merge] INFO  Conflicting PRs (not included):
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-09-12 00:43:05,636 [   scc.merge] INFO  
2025-09-12 00:43:05,636 [   scc.merge] INFO  Repository: ome/omero-iviewer
2025-09-12 00:43:05,636 [   scc.merge] INFO  Excluded PRs:
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-09-12 00:43:05,636 [   scc.merge] INFO  Updating 7a798ce..bb94cf8
2025-09-12 00:43:05,636 [   scc.merge] INFO  Previously merged:
2025-09-12 00:43:05,636 [   scc.merge] INFO    - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-12 00:43:05,636 [   scc.merge] INFO  
2025-09-12 00:43:05,636 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,637 [   scc.merge] INFO    - PR 460 will-moore 'Channel min spinner fix'
2025-09-12 00:43:05,637 [   scc.merge] INFO    - PR 465 will-moore 'Save as Figure'
2025-09-12 00:43:05,637 [   scc.merge] INFO    - PR 471 will-moore 'Z projection disabled tooltip'
2025-09-12 00:43:05,637 [   scc.merge] INFO    - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-09-12 00:43:05,637 [   scc.merge] INFO  
2025-09-12 00:43:05,637 [   scc.merge] INFO  Conflicting PRs (not included):
2025-09-12 00:43:05,637 [   scc.merge] INFO    - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-09-12 00:43:05,637 [   scc.merge] INFO  
2025-09-12 00:43:05,637 [   scc.merge] INFO  Repository: ome/omero-mapr
2025-09-12 00:43:05,637 [   scc.merge] INFO  Excluded PRs:
2025-09-12 00:43:05,637 [   scc.merge] INFO    - PR 79 will-moore 'Right panel title' (exclude comment)
2025-09-12 00:43:05,637 [   scc.merge] INFO  Already up to date.
2025-09-12 00:43:05,637 [   scc.merge] INFO  
2025-09-12 00:43:05,637 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,637 [   scc.merge] INFO    - PR 74 will-moore 'mapr extension of webclient'
2025-09-12 00:43:05,637 [   scc.merge] INFO    - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-12 00:43:05,637 [   scc.merge] INFO  
2025-09-12 00:43:05,637 [   scc.merge] INFO  Conflicting PRs (not included):
2025-09-12 00:43:05,637 [   scc.merge] INFO    - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:43:05,637 [   scc.merge] INFO  
2025-09-12 00:43:05,637 [   scc.merge] INFO  Repository: ome/omero-metadata
2025-09-12 00:43:05,637 [   scc.merge] INFO  Updating 3cd120c..55060a2
2025-09-12 00:43:05,637 [   scc.merge] INFO  Previously merged:
2025-09-12 00:43:05,637 [   scc.merge] INFO    - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-12 00:43:05,637 [   scc.merge] INFO  
2025-09-12 00:43:05,637 [   scc.merge] INFO  Conflicting PRs (not included):
2025-09-12 00:43:05,637 [   scc.merge] INFO    - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-09-12 00:43:05,637 [   scc.merge] INFO    - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-09-12 00:43:05,637 [   scc.merge] INFO  
2025-09-12 00:43:05,637 [   scc.merge] INFO  Repository: ome/omero-parade
2025-09-12 00:43:05,637 [   scc.merge] INFO  Excluded PRs:
2025-09-12 00:43:05,637 [   scc.merge] INFO    - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-09-12 00:43:05,637 [   scc.merge] INFO    - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-09-12 00:43:05,637 [   scc.merge] INFO    - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-09-12 00:43:05,637 [   scc.merge] INFO    - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-09-12 00:43:05,637 [   scc.merge] INFO  Already up to date.
2025-09-12 00:43:05,637 [   scc.merge] INFO  
2025-09-12 00:43:05,637 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,638 [   scc.merge] INFO    - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-09-12 00:43:05,638 [   scc.merge] INFO    - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-09-12 00:43:05,638 [   scc.merge] INFO    - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-12 00:43:05,638 [   scc.merge] INFO  
2025-09-12 00:43:05,638 [   scc.merge] INFO  Repository: ome/omero-prometheus-tools
2025-09-12 00:43:05,638 [   scc.merge] INFO  Already up to date.
2025-09-12 00:43:05,638 [   scc.merge] INFO  
2025-09-12 00:43:05,638 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,638 [   scc.merge] INFO    - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:43:05,638 [   scc.merge] INFO  
2025-09-12 00:43:05,638 [   scc.merge] INFO  Repository: ome/omero-rois
2025-09-12 00:43:05,638 [   scc.merge] INFO  Excluded PRs:
2025-09-12 00:43:05,638 [   scc.merge] INFO    - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-09-12 00:43:05,638 [   scc.merge] INFO  Already up to date.
2025-09-12 00:43:05,638 [   scc.merge] INFO  
2025-09-12 00:43:05,638 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,638 [   scc.merge] INFO    - PR 33 jo-mueller 'Add roi to array functions'
2025-09-12 00:43:05,638 [   scc.merge] INFO    - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:43:05,638 [   scc.merge] INFO  
2025-09-12 00:43:05,638 [   scc.merge] INFO  Repository: ome/omero-signup
2025-09-12 00:43:05,638 [   scc.merge] INFO  Already up to date.
2025-09-12 00:43:05,638 [   scc.merge] INFO  
2025-09-12 00:43:05,638 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,638 [   scc.merge] INFO    - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:43:05,638 [   scc.merge] INFO  
2025-09-12 00:43:05,638 [   scc.merge] INFO  Conflicting PRs (not included):
2025-09-12 00:43:05,638 [   scc.merge] INFO    - PR 14 manics 'Add pre-commit (black, flake8)'
2025-09-12 00:43:05,638 [   scc.merge] INFO  
2025-09-12 00:43:05,638 [   scc.merge] INFO  Repository: openmicroscopy/omero-test-infra
2025-09-12 00:43:05,638 [   scc.merge] INFO  Excluded PRs:
2025-09-12 00:43:05,638 [   scc.merge] INFO    - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-09-12 00:43:05,638 [   scc.merge] INFO    - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-09-12 00:43:05,638 [   scc.merge] INFO    - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-09-12 00:43:05,638 [   scc.merge] INFO  Already up to date.
2025-09-12 00:43:05,638 [   scc.merge] INFO  
2025-09-12 00:43:05,638 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,638 [   scc.merge] INFO    - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-09-12 00:43:05,638 [   scc.merge] INFO    - PR 76 will-moore 'Run cli deps'
2025-09-12 00:43:05,638 [   scc.merge] INFO  
2025-09-12 00:43:05,639 [   scc.merge] INFO  Repository: ome/omero-upload
2025-09-12 00:43:05,639 [   scc.merge] INFO  Already up to date.
2025-09-12 00:43:05,639 [   scc.merge] INFO  
2025-09-12 00:43:05,639 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,639 [   scc.merge] INFO    - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:43:05,639 [   scc.merge] INFO  
2025-09-12 00:43:05,639 [   scc.merge] INFO  Repository: ome/omero-virtual-microscope
2025-09-12 00:43:05,639 [   scc.merge] INFO  Updating deab817..160d894
2025-09-12 00:43:05,639 [   scc.merge] INFO  Previously merged:
2025-09-12 00:43:05,639 [   scc.merge] INFO    - PR 20 jburel 'Build'
2025-09-12 00:43:05,639 [   scc.merge] INFO  
2025-09-12 00:43:05,639 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,639 [   scc.merge] INFO    - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:43:05,639 [   scc.merge] INFO  
2025-09-12 00:43:05,639 [   scc.merge] INFO  Repository: ome/omero-web-zarr
2025-09-12 00:43:05,639 [   scc.merge] INFO  Excluded PRs:
2025-09-12 00:43:05,639 [   scc.merge] INFO    - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-09-12 00:43:05,639 [   scc.merge] INFO  Updating 8f3c313..00e0207
2025-09-12 00:43:05,639 [   scc.merge] INFO  Previously merged:
2025-09-12 00:43:05,639 [   scc.merge] INFO    - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-09-12 00:43:05,639 [   scc.merge] INFO  
2025-09-12 00:43:05,639 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,639 [   scc.merge] INFO    - PR 21 will-moore 'Web zarr import'
2025-09-12 00:43:05,639 [   scc.merge] INFO  
2025-09-12 00:43:05,639 [   scc.merge] INFO  Conflicting PRs (not included):
2025-09-12 00:43:05,639 [   scc.merge] INFO    - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-09-12 00:43:05,639 [   scc.merge] INFO  
2025-09-12 00:43:05,639 [   scc.merge] INFO  Repository: openmicroscopy/omero-weberror
2025-09-12 00:43:05,639 [   scc.merge] INFO  Already up to date.
2025-09-12 00:43:05,639 [   scc.merge] INFO  
2025-09-12 00:43:05,639 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,639 [   scc.merge] INFO    - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:43:05,639 [   scc.merge] INFO  
2025-09-12 00:43:05,639 [   scc.merge] INFO  Repository: openmicroscopy/omero-webtest
2025-09-12 00:43:05,639 [   scc.merge] INFO  Already up to date.
2025-09-12 00:43:05,639 [   scc.merge] INFO  
2025-09-12 00:43:05,639 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,639 [   scc.merge] INFO    - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-12 00:43:05,639 [   scc.merge] INFO  
2025-09-12 00:43:05,640 [   scc.merge] INFO  Repository: ome/rOMERO-gateway
2025-09-12 00:43:05,640 [   scc.merge] INFO  Already up to date.
2025-09-12 00:43:05,640 [   scc.merge] INFO  
2025-09-12 00:43:05,640 [   scc.merge] INFO  Conflicting PRs (not included):
2025-09-12 00:43:05,640 [   scc.merge] INFO    - PR 100 dominikl 'Run tests properly'
2025-09-12 00:43:05,640 [   scc.merge] INFO  
2025-09-12 00:43:05,640 [   scc.merge] INFO  Repository: ome/scripts
2025-09-12 00:43:05,640 [   scc.merge] INFO  Excluded PRs:
2025-09-12 00:43:05,640 [   scc.merge] INFO    - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-09-12 00:43:05,640 [   scc.merge] INFO    - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-09-12 00:43:05,640 [   scc.merge] INFO  Updating 4b4c755..03b9116
2025-09-12 00:43:05,640 [   scc.merge] INFO  Previously merged:
2025-09-12 00:43:05,640 [   scc.merge] INFO    - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2025-09-12 00:43:05,640 [   scc.merge] INFO    - PR 227 jburel 'Replace tostring by tobytes'
2025-09-12 00:43:05,640 [   scc.merge] INFO    - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-09-12 00:43:05,640 [   scc.merge] INFO  
2025-09-12 00:43:05,640 [   scc.merge] INFO  Merged PRs:
2025-09-12 00:43:05,640 [   scc.merge] INFO    - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-09-12 00:43:05,640 [   scc.merge] INFO  
2025-09-12 00:43:05,640 [   scc.merge] INFO  Conflicting PRs (not included):
2025-09-12 00:43:05,640 [   scc.merge] INFO    - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-09-12 00:43:05,640 [   scc.merge] INFO  
2025-09-12 00:43:05,640 [   scc.merge] DEBUG Cleaning remote branches created for merging
2025-09-12 00:43:05,640 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,642 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-09-12 00:43:05,642 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,645 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,645 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-09-12 00:43:05,645 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,647 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,647 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-09-12 00:43:05,647 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,649 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,649 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-09-12 00:43:05,649 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,651 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,652 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-09-12 00:43:05,652 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,654 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,654 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-09-12 00:43:05,654 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,656 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,656 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-09-12 00:43:05,656 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,658 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,659 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-09-12 00:43:05,659 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,661 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,661 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-09-12 00:43:05,661 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,663 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,663 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-09-12 00:43:05,663 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,665 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,666 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-09-12 00:43:05,666 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,668 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,668 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-09-12 00:43:05,668 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,671 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,671 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-09-12 00:43:05,671 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,673 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,673 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-09-12 00:43:05,673 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,675 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,675 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-09-12 00:43:05,675 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,678 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,678 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-09-12 00:43:05,678 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,680 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,680 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-09-12 00:43:05,680 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,682 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,682 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-09-12 00:43:05,682 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,684 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,684 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-09-12 00:43:05,685 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,687 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,687 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-09-12 00:43:05,687 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,689 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,689 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-09-12 00:43:05,689 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,691 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-12 00:43:05,691 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-09-12 00:43:05,691 [     scc.git] DEBUG Calling 'git remote'
2025-09-12 00:43:05,694 [     scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
  warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
  warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
  warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
  warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
  warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 6cb4a17] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
  (use "git add <file>..." to include in what will be committed)
	.eggs/

nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 56fb7cc] Update component versions
 1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-09-12 00:43:52,583 [github.Reque] INFO  Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-09-12 00:44:01,819 [github.Reque] INFO  Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-09-12 00:44:04,250 [github.Reque] INFO  Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-09-12 00:44:09,008 [github.Reque] INFO  Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-09-12 00:44:48,739 [    scc.push] INFO  Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS