Skipping 208 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-09-19 00:41:13,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-09-19 00:41:13,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:41:13,914 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-09-19 00:41:13,914 [ scc.repo] DEBUG ## Branches found:
2025-09-19 00:41:13,914 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-09-19 00:41:13,914 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:41:13,914 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:13,916 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-19 00:41:13,919 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-19 00:41:13,919 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-19 00:41:13,921 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-19 00:41:13,928 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-09-19 00:41:14,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-09-19 00:41:14,609 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-09-19 00:41:14,916 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-09-19 00:41:14,916 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-09-19 00:41:14,920 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-09-19 00:41:15,201 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-09-19 00:41:15,201 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-09-19 00:41:15,205 [ scc.git] DEBUG ## Unique users: []
2025-09-19 00:41:15,205 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:41:15,205 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:15,208 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-19 00:41:15,212 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:15,214 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-19 00:41:15,225 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-09-19 00:41:15,225 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-09-19 00:41:15,226 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-09-19 00:41:15,226 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-09-19 00:41:15,226 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-19 00:41:15,226 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-19 00:41:15,228 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-19 00:41:15,232 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-09-19 00:41:15,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:41:15,410 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-19 00:41:15,414 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-19 00:41:15,416 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#536](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2025-09-19 00:41:15,418 [ scc.config] DEBUG Found github.token
2025-09-19 00:41:15,418 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-09-19 00:41:15,419 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-19 00:41:15,423 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:15,425 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-19 00:41:15,438 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-09-19 00:41:15,438 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-09-19 00:41:15,438 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-09-19 00:41:15,438 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-19 00:41:15,439 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-19 00:41:15,441 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-19 00:41:15,446 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-09-19 00:41:15,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:41:15,809 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-19 00:41:15,813 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-19 00:41:15,815 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#536](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-09-19 00:41:15,817 [ scc.config] DEBUG Found github.token
2025-09-19 00:41:15,817 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-09-19 00:41:15,817 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-19 00:41:15,853 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:41:15,854 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:15,856 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-19 00:41:15,890 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-19 00:41:15,893 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f89aed18f50> has no local changes
2025-09-19 00:41:15,893 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#536 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/)'
2025-09-19 00:41:15,899 [ scc.git] DEBUG [detached HEAD 7867848] merge master -Dorg -Ssuccess-only
2025-09-19 00:41:15,900 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:41:15,900 [ scc.repo] DEBUG ## PRs found:
2025-09-19 00:41:16,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-09-19 00:41:16,884 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-09-19 00:41:17,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-09-19 00:41:17,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:41:18,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-19 00:41:18,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-09-19 00:41:19,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:41:19,384 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-19 00:41:19,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-09-19 00:41:19,854 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-19 00:41:20,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-09-19 00:41:20,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:41:21,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-19 00:41:22,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-09-19 00:41:22,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:41:22,523 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-09-19 00:41:23,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-09-19 00:41:23,033 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-19 00:41:23,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-09-19 00:41:24,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:41:24,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-19 00:41:25,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-09-19 00:41:25,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:41:25,678 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-09-19 00:41:26,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-09-19 00:41:26,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-09-19 00:41:27,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-09-19 00:41:27,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-09-19 00:41:28,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-09-19 00:41:28,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-09-19 00:41:29,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-09-19 00:41:29,050 [ scc.repo] DEBUG ## Branches found:
2025-09-19 00:41:29,050 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-09-19 00:41:29,050 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:41:29,050 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:29,053 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-19 00:41:29,055 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-19 00:41:29,055 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-19 00:41:29,058 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-19 00:41:29,060 [ scc.git] DEBUG Already up to date.
2025-09-19 00:41:29,060 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-09-19 00:41:29,373 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-19 00:41:29,373 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-09-19 00:41:29,377 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-09-19 00:41:29,652 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-19 00:41:29,652 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-09-19 00:41:29,656 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-09-19 00:41:29,949 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-19 00:41:29,949 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-09-19 00:41:29,953 [ scc.git] DEBUG ## Unique users: []
2025-09-19 00:41:29,953 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:41:29,953 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:29,955 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-09-19 00:41:29,958 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:29,960 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-09-19 00:41:29,967 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-19 00:41:29,970 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-09-19 00:41:29,970 [ scc.git] DEBUG package.json | 2 +-
2025-09-19 00:41:29,970 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-09-19 00:41:30,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:41:30,119 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-09-19 00:41:30,121 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:30,124 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-09-19 00:41:30,132 [ scc.git] DEBUG Auto-merging package-lock.json
2025-09-19 00:41:30,132 [ scc.git] DEBUG Auto-merging package.json
2025-09-19 00:41:30,133 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-19 00:41:30,135 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-09-19 00:41:30,135 [ scc.git] DEBUG package.json | 2 +-
2025-09-19 00:41:30,135 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-09-19 00:41:30,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:41:30,524 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-09-19 00:41:30,527 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:30,529 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-09-19 00:41:30,537 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-19 00:41:30,539 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-19 00:41:30,540 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-19 00:41:30,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:41:30,936 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-19 00:41:30,973 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:41:30,973 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:30,975 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-19 00:41:31,010 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-19 00:41:31,013 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f89ac663490> has no local changes
2025-09-19 00:41:31,013 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#536 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/)'
2025-09-19 00:41:31,018 [ scc.git] DEBUG [detached HEAD 79e769a] merge master -Dorg -Ssuccess-only
2025-09-19 00:41:31,019 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:41:31,019 [ scc.repo] DEBUG ## PRs found:
2025-09-19 00:41:31,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2025-09-19 00:41:31,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2025-09-19 00:41:31,904 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-19 00:41:32,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-09-19 00:41:33,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:41:33,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-19 00:41:34,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-09-19 00:41:34,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:41:34,649 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:41:34,649 [ scc.repo] DEBUG ## Branches found:
2025-09-19 00:41:34,649 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-09-19 00:41:34,649 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:41:34,649 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:34,652 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-19 00:41:34,654 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-19 00:41:34,654 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-19 00:41:34,656 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-19 00:41:34,659 [ scc.git] DEBUG Already up to date.
2025-09-19 00:41:34,659 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2025-09-19 00:41:34,951 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2025-09-19 00:41:34,951 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2025-09-19 00:41:34,956 [ scc.git] DEBUG ## Unique users: []
2025-09-19 00:41:34,956 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:41:34,956 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:34,958 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2025-09-19 00:41:34,961 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:34,963 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2025-09-19 00:41:34,969 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-19 00:41:34,971 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-19 00:41:34,971 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-19 00:41:35,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:41:35,128 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-19 00:41:35,163 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:41:35,164 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:35,166 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-19 00:41:35,200 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-19 00:41:35,203 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f89ac6708d0> has no local changes
2025-09-19 00:41:35,203 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#536 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/)'
2025-09-19 00:41:35,208 [ scc.git] DEBUG [detached HEAD 52dcd2c] merge master -Dorg -Ssuccess-only
2025-09-19 00:41:35,208 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:41:35,208 [ scc.repo] DEBUG ## PRs found:
2025-09-19 00:41:35,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-09-19 00:41:36,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2025-09-19 00:41:36,214 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-19 00:41:36,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-09-19 00:41:37,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:41:37,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-19 00:41:38,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-09-19 00:41:39,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2025-09-19 00:41:39,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-09-19 00:41:40,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2025-09-19 00:41:40,054 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:41:40,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-09-19 00:41:40,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-09-19 00:41:41,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-19 00:41:42,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:41:42,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-19 00:41:43,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-19 00:41:43,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-09-19 00:41:44,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-19 00:41:44,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-09-19 00:41:44,508 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-09-19 00:41:45,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-09-19 00:41:45,014 [ scc.repo] DEBUG ## Branches found:
2025-09-19 00:41:45,014 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-09-19 00:41:45,014 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:41:45,014 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:45,017 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-19 00:41:45,019 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-19 00:41:45,019 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-19 00:41:45,022 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-19 00:41:45,024 [ scc.git] DEBUG Already up to date.
2025-09-19 00:41:45,024 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-09-19 00:41:45,313 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-09-19 00:41:45,313 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-09-19 00:41:45,317 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2025-09-19 00:41:45,604 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-09-19 00:41:45,604 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2025-09-19 00:41:45,608 [ scc.git] DEBUG ## Unique users: []
2025-09-19 00:41:45,608 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:41:45,608 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:45,610 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-09-19 00:41:45,613 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:45,615 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-09-19 00:41:45,622 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-19 00:41:45,625 [ scc.git] DEBUG setup.py | 4 +-
2025-09-19 00:41:45,625 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-09-19 00:41:45,625 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-09-19 00:41:45,625 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-09-19 00:41:45,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:41:45,765 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2025-09-19 00:41:45,768 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:45,770 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2025-09-19 00:41:45,776 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-19 00:41:45,778 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-19 00:41:45,779 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-19 00:41:46,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:41:46,164 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-19 00:41:46,199 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:41:46,200 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:46,202 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-19 00:41:46,237 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-19 00:41:46,240 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f89ac6b3610> has no local changes
2025-09-19 00:41:46,240 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#536 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/)'
2025-09-19 00:41:46,245 [ scc.git] DEBUG [detached HEAD 16594f3] merge master -Dorg -Ssuccess-only
2025-09-19 00:41:46,245 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:41:46,245 [ scc.repo] DEBUG ## PRs found:
2025-09-19 00:41:46,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-09-19 00:41:47,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2025-09-19 00:41:47,232 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-19 00:41:47,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-09-19 00:41:48,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:41:48,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-19 00:41:49,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-09-19 00:41:49,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:41:49,879 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:41:50,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-09-19 00:41:50,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-09-19 00:41:51,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-09-19 00:41:51,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:41:52,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-09-19 00:41:52,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:41:52,735 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-09-19 00:41:52,735 [ scc.repo] DEBUG ## Branches found:
2025-09-19 00:41:52,735 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-09-19 00:41:52,736 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:41:52,736 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:52,738 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-19 00:41:52,740 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-19 00:41:52,740 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-19 00:41:52,743 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-19 00:41:52,746 [ scc.git] DEBUG Already up to date.
2025-09-19 00:41:52,746 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-09-19 00:41:53,070 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-09-19 00:41:53,070 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-09-19 00:41:53,075 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-09-19 00:41:53,352 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-09-19 00:41:53,352 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-09-19 00:41:53,356 [ scc.git] DEBUG ## Unique users: []
2025-09-19 00:41:53,357 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:41:53,357 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:53,359 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-19 00:41:53,362 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:53,364 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-19 00:41:53,371 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-09-19 00:41:53,371 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-09-19 00:41:53,371 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-09-19 00:41:53,371 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-09-19 00:41:53,371 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-09-19 00:41:53,371 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-09-19 00:41:53,371 [ scc.git] DEBUG Auto-merging setup.py
2025-09-19 00:41:53,371 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-09-19 00:41:53,371 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-19 00:41:53,372 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-19 00:41:53,374 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-09-19 00:41:53,377 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-09-19 00:41:53,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:41:53,522 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-19 00:41:53,525 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-09-19 00:41:53,528 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#536](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/consoleText) for more details.
Possible conflicts:
- Upstream changes
- setup.py
- omero_signup/signup_settings.py
- omero_signup/urls.py
- omero_signup/views.py
--conflicts
2025-09-19 00:41:53,530 [ scc.config] DEBUG Found github.token
2025-09-19 00:41:53,530 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-09-19 00:41:53,530 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-09-19 00:41:53,533 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:53,535 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-09-19 00:41:53,541 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-19 00:41:53,543 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-19 00:41:53,543 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-19 00:41:53,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:41:53,925 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-19 00:41:53,961 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:41:53,961 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:41:53,963 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-19 00:41:53,998 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-19 00:41:54,001 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f89acf65290> has no local changes
2025-09-19 00:41:54,001 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#536 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/)'
2025-09-19 00:41:54,006 [ scc.git] DEBUG [detached HEAD 837552a] merge master -Dorg -Ssuccess-only
2025-09-19 00:41:54,007 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:41:54,007 [ scc.repo] DEBUG ## PRs found:
2025-09-19 00:41:54,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-09-19 00:41:55,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-09-19 00:41:55,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-09-19 00:41:56,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:41:56,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-19 00:41:57,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-09-19 00:41:57,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:41:57,515 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-09-19 00:41:58,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-09-19 00:41:58,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-09-19 00:41:59,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-09-19 00:41:59,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:42:00,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-19 00:42:00,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-09-19 00:42:01,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-09-19 00:42:01,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-09-19 00:42:02,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-09-19 00:42:02,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-09-19 00:42:03,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:42:03,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-09-19 00:42:04,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:42:04,140 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-09-19 00:42:04,140 [ scc.repo] DEBUG ## Branches found:
2025-09-19 00:42:04,140 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-09-19 00:42:04,140 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:04,140 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:04,143 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-19 00:42:04,145 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-19 00:42:04,145 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-19 00:42:04,148 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-19 00:42:04,151 [ scc.git] DEBUG Already up to date.
2025-09-19 00:42:04,151 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-09-19 00:42:04,446 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-09-19 00:42:04,447 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-09-19 00:42:04,451 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-09-19 00:42:04,735 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-09-19 00:42:04,735 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-09-19 00:42:04,739 [ scc.git] DEBUG ## Unique users: []
2025-09-19 00:42:04,739 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:04,740 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:04,742 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-09-19 00:42:04,746 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:04,748 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-09-19 00:42:04,757 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-19 00:42:04,760 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-09-19 00:42:04,760 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-09-19 00:42:04,760 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-09-19 00:42:04,760 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-09-19 00:42:04,760 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-09-19 00:42:04,760 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-09-19 00:42:04,760 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-09-19 00:42:04,760 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-09-19 00:42:04,761 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-09-19 00:42:04,761 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-09-19 00:42:04,761 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-09-19 00:42:04,761 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-09-19 00:42:04,761 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-09-19 00:42:04,761 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-09-19 00:42:04,761 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-09-19 00:42:04,761 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-09-19 00:42:04,762 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-09-19 00:42:04,762 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-09-19 00:42:04,762 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-09-19 00:42:04,762 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-09-19 00:42:04,762 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-09-19 00:42:04,762 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-09-19 00:42:04,762 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-09-19 00:42:04,762 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-09-19 00:42:04,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:04,920 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-09-19 00:42:04,924 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:04,925 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-09-19 00:42:04,933 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-19 00:42:04,936 [ scc.git] DEBUG docker | 1 +
2025-09-19 00:42:04,936 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-09-19 00:42:05,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:05,454 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-19 00:42:05,490 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:05,490 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:05,492 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-19 00:42:05,526 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-19 00:42:05,529 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f89ac6a04d0> has no local changes
2025-09-19 00:42:05,529 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#536 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/)'
2025-09-19 00:42:05,535 [ scc.git] DEBUG [detached HEAD 7ffe3ea] merge master -Dorg -Ssuccess-only
2025-09-19 00:42:05,535 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:05,535 [ scc.repo] DEBUG ## PRs found:
2025-09-19 00:42:06,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2025-09-19 00:42:06,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2025-09-19 00:42:06,778 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-19 00:42:07,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-09-19 00:42:07,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:42:08,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-19 00:42:08,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-09-19 00:42:09,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:42:09,337 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:42:09,337 [ scc.repo] DEBUG ## Branches found:
2025-09-19 00:42:09,337 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-09-19 00:42:09,337 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:09,337 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:09,339 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-19 00:42:09,341 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-19 00:42:09,342 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-19 00:42:09,344 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-19 00:42:09,347 [ scc.git] DEBUG Already up to date.
2025-09-19 00:42:09,347 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-09-19 00:42:09,639 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2025-09-19 00:42:09,639 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-09-19 00:42:09,643 [ scc.git] DEBUG ## Unique users: []
2025-09-19 00:42:09,643 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:09,643 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:09,645 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-09-19 00:42:09,648 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:09,650 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-09-19 00:42:09,656 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-19 00:42:09,658 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-19 00:42:09,658 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-19 00:42:09,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:09,804 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-19 00:42:09,839 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:09,839 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:09,841 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-19 00:42:09,877 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-19 00:42:09,880 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f89ac6d5950> has no local changes
2025-09-19 00:42:09,880 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#536 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/)'
2025-09-19 00:42:09,885 [ scc.git] DEBUG [detached HEAD cf1c1c7] merge master -Dorg -Ssuccess-only
2025-09-19 00:42:09,885 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:09,885 [ scc.repo] DEBUG ## PRs found:
2025-09-19 00:42:10,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2025-09-19 00:42:10,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2025-09-19 00:42:10,825 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-19 00:42:11,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-09-19 00:42:11,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:42:12,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-19 00:42:13,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-09-19 00:42:13,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:42:13,510 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:42:13,510 [ scc.repo] DEBUG ## Branches found:
2025-09-19 00:42:13,510 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-09-19 00:42:13,510 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:13,510 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:13,513 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-19 00:42:13,515 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-19 00:42:13,515 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-19 00:42:13,518 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-19 00:42:13,524 [ scc.git] DEBUG Updating deab817..160d894
2025-09-19 00:42:14,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-09-19 00:42:14,218 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-09-19 00:42:14,511 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2025-09-19 00:42:14,511 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-09-19 00:42:14,515 [ scc.git] DEBUG ## Unique users: []
2025-09-19 00:42:14,515 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:14,516 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:14,518 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-09-19 00:42:14,520 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:14,523 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-09-19 00:42:14,529 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-19 00:42:14,531 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-19 00:42:14,531 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-19 00:42:14,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:14,692 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-19 00:42:14,727 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:14,727 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:14,729 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-19 00:42:14,763 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-19 00:42:14,766 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f89ac6a5250> has no local changes
2025-09-19 00:42:14,766 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#536 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/)'
2025-09-19 00:42:14,771 [ scc.git] DEBUG [detached HEAD c5e08df] merge master -Dorg -Ssuccess-only
2025-09-19 00:42:14,772 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:14,772 [ scc.git] INFO Overriding base-branch from master to main
2025-09-19 00:42:14,772 [ scc.repo] DEBUG ## PRs found:
2025-09-19 00:42:15,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-09-19 00:42:15,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-09-19 00:42:16,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2025-09-19 00:42:16,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-09-19 00:42:17,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:42:17,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-19 00:42:18,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-09-19 00:42:18,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:42:18,655 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-09-19 00:42:19,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-09-19 00:42:19,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-09-19 00:42:20,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-09-19 00:42:20,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-09-19 00:42:21,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:42:21,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-09-19 00:42:22,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:42:22,000 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-09-19 00:42:22,000 [ scc.repo] DEBUG ## Branches found:
2025-09-19 00:42:22,000 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-09-19 00:42:22,000 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:22,000 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:22,003 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-09-19 00:42:22,005 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-19 00:42:22,005 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-09-19 00:42:22,008 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-09-19 00:42:22,014 [ scc.git] DEBUG Updating 8f3c313..00e0207
2025-09-19 00:42:22,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2025-09-19 00:42:22,710 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-09-19 00:42:22,993 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-19 00:42:22,993 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-09-19 00:42:22,997 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-09-19 00:42:23,276 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-19 00:42:23,276 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-09-19 00:42:23,280 [ scc.git] DEBUG ## Unique users: []
2025-09-19 00:42:23,280 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:23,280 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:23,282 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-19 00:42:23,285 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:23,287 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-19 00:42:23,294 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-09-19 00:42:23,294 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-09-19 00:42:23,294 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-09-19 00:42:23,294 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-19 00:42:23,295 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-19 00:42:23,297 [ scc.git] DEBUG Calling 'git reset --hard 00e02072dc29b04eba14c080ca8a0175a1499c15'
2025-09-19 00:42:23,300 [ scc.git] DEBUG HEAD is now at 00e0207 Merge pull request #20 from will-moore/zarr_python_v3
2025-09-19 00:42:23,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:23,453 [ scc.git] DEBUG Calling 'git merge-base 00e02072dc29b04eba14c080ca8a0175a1499c15 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-19 00:42:23,455 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..00e02072dc29b04eba14c080ca8a0175a1499c15'
2025-09-19 00:42:23,458 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#536](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-09-19 00:42:23,460 [ scc.config] DEBUG Found github.token
2025-09-19 00:42:23,460 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-09-19 00:42:23,460 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-09-19 00:42:23,462 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:23,464 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-09-19 00:42:23,471 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-09-19 00:42:23,472 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-19 00:42:23,475 [ scc.git] DEBUG README.rst | 3 +
2025-09-19 00:42:23,475 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2025-09-19 00:42:23,475 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-09-19 00:42:23,475 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2025-09-19 00:42:23,475 [ scc.git] DEBUG setup.py | 5 +-
2025-09-19 00:42:23,475 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2025-09-19 00:42:23,475 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-09-19 00:42:23,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:23,894 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-19 00:42:23,929 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:23,929 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:23,931 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-19 00:42:23,965 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-19 00:42:23,969 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f89acf57f10> has no local changes
2025-09-19 00:42:23,969 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..00e0207
Previously merged:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#536 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/)'
2025-09-19 00:42:23,974 [ scc.git] DEBUG [detached HEAD d1f1be4] merge master -Dorg -Ssuccess-only
2025-09-19 00:42:23,974 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:23,974 [ scc.repo] DEBUG ## PRs found:
2025-09-19 00:42:24,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2025-09-19 00:42:24,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2025-09-19 00:42:24,904 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-19 00:42:25,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-09-19 00:42:26,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:42:26,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-19 00:42:27,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-09-19 00:42:27,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:42:27,434 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:42:27,435 [ scc.repo] DEBUG ## Branches found:
2025-09-19 00:42:27,435 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-09-19 00:42:27,435 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:27,435 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:27,437 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-19 00:42:27,439 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-19 00:42:27,440 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-19 00:42:27,442 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-19 00:42:27,445 [ scc.git] DEBUG Already up to date.
2025-09-19 00:42:27,445 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2025-09-19 00:42:27,737 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2025-09-19 00:42:27,737 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2025-09-19 00:42:27,741 [ scc.git] DEBUG ## Unique users: []
2025-09-19 00:42:27,741 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:27,741 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:27,743 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-09-19 00:42:27,746 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:27,748 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-09-19 00:42:27,754 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-19 00:42:27,756 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-19 00:42:27,756 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-19 00:42:27,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:27,897 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-19 00:42:27,933 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:27,933 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:27,935 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-19 00:42:27,970 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-19 00:42:27,973 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f89ac6a1410> has no local changes
2025-09-19 00:42:27,974 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#536 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/)'
2025-09-19 00:42:27,979 [ scc.git] DEBUG [detached HEAD 1651568] merge master -Dorg -Ssuccess-only
2025-09-19 00:42:27,979 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:27,979 [ scc.repo] DEBUG ## PRs found:
2025-09-19 00:42:28,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2025-09-19 00:42:28,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2025-09-19 00:42:28,939 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-19 00:42:29,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-09-19 00:42:30,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:42:30,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-19 00:42:31,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-09-19 00:42:31,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:42:31,553 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:42:31,553 [ scc.repo] DEBUG ## Branches found:
2025-09-19 00:42:31,553 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-09-19 00:42:31,554 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:31,554 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:31,556 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-19 00:42:31,558 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-19 00:42:31,558 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-19 00:42:31,561 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-19 00:42:31,563 [ scc.git] DEBUG Already up to date.
2025-09-19 00:42:31,563 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2025-09-19 00:42:31,868 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2025-09-19 00:42:31,869 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2025-09-19 00:42:31,872 [ scc.git] DEBUG ## Unique users: []
2025-09-19 00:42:31,872 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:31,872 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:31,874 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-09-19 00:42:31,877 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:31,879 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-09-19 00:42:31,885 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-19 00:42:31,888 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-19 00:42:31,888 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-19 00:42:32,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:32,028 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-19 00:42:32,064 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:32,065 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:32,067 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-19 00:42:32,101 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-19 00:42:32,104 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f89ac67f9d0> has no local changes
2025-09-19 00:42:32,104 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#536 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/)'
2025-09-19 00:42:32,109 [ scc.git] DEBUG [detached HEAD 4e124d4] merge master -Dorg -Ssuccess-only
2025-09-19 00:42:32,109 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:32,109 [ scc.repo] DEBUG ## PRs found:
2025-09-19 00:42:32,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-09-19 00:42:33,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-09-19 00:42:33,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-09-19 00:42:34,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-09-19 00:42:34,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:42:35,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-09-19 00:42:35,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:42:35,475 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-09-19 00:42:35,475 [ scc.repo] DEBUG ## Branches found:
2025-09-19 00:42:35,475 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-09-19 00:42:35,475 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:35,475 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:35,478 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-19 00:42:35,480 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-19 00:42:35,480 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-19 00:42:35,482 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-19 00:42:35,485 [ scc.git] DEBUG Already up to date.
2025-09-19 00:42:35,485 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-09-19 00:42:35,766 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-09-19 00:42:35,766 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-09-19 00:42:35,770 [ scc.git] DEBUG ## Unique users: []
2025-09-19 00:42:35,771 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:35,771 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:35,773 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-19 00:42:35,776 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:35,778 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-19 00:42:35,785 [ scc.git] DEBUG Auto-merging Dockerfile
2025-09-19 00:42:35,785 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-09-19 00:42:35,785 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-19 00:42:35,786 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-19 00:42:35,788 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-09-19 00:42:35,792 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-09-19 00:42:35,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:35,933 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-19 00:42:35,936 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-09-19 00:42:35,938 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#536](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-09-19 00:42:35,940 [ scc.config] DEBUG Found github.token
2025-09-19 00:42:35,940 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-09-19 00:42:35,940 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-19 00:42:35,975 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:35,975 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:35,977 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-19 00:42:36,011 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-19 00:42:36,015 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f89ac6fdcd0> has no local changes
2025-09-19 00:42:36,015 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#536 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/)'
2025-09-19 00:42:36,020 [ scc.git] DEBUG [detached HEAD bd6aeba] merge master -Dorg -Ssuccess-only
2025-09-19 00:42:36,021 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:36,021 [ scc.git] INFO Overriding base-branch from master to develop
2025-09-19 00:42:36,021 [ scc.repo] DEBUG ## PRs found:
2025-09-19 00:42:36,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-09-19 00:42:36,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-09-19 00:42:37,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-09-19 00:42:37,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-09-19 00:42:38,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:42:39,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-19 00:42:39,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-09-19 00:42:39,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:42:39,929 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-09-19 00:42:40,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-09-19 00:42:40,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-09-19 00:42:41,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-09-19 00:42:41,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-19 00:42:42,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-09-19 00:42:42,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-09-19 00:42:42,800 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-09-19 00:42:43,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-09-19 00:42:43,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-09-19 00:42:44,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-09-19 00:42:44,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-09-19 00:42:44,706 [ scc.repo] DEBUG ## Branches found:
2025-09-19 00:42:44,707 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-09-19 00:42:44,707 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:44,707 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:44,709 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-09-19 00:42:44,711 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-19 00:42:44,712 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-09-19 00:42:44,714 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-09-19 00:42:44,723 [ scc.git] DEBUG Updating 4b4c755..03b9116
2025-09-19 00:42:45,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2025-09-19 00:42:45,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-09-19 00:42:46,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-09-19 00:42:46,638 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-09-19 00:42:46,967 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-09-19 00:42:46,967 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-09-19 00:42:46,971 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-09-19 00:42:47,266 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-09-19 00:42:47,266 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-09-19 00:42:47,270 [ scc.git] DEBUG ## Unique users: []
2025-09-19 00:42:47,270 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:47,270 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:47,272 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-19 00:42:47,277 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:47,279 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-19 00:42:47,288 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-09-19 00:42:47,289 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-19 00:42:47,289 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-19 00:42:47,291 [ scc.git] DEBUG Calling 'git reset --hard 03b9116196e1a799dd18a666559613d912be01a5'
2025-09-19 00:42:47,294 [ scc.git] DEBUG HEAD is now at 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0
2025-09-19 00:42:47,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:47,438 [ scc.git] DEBUG Calling 'git merge-base 03b9116196e1a799dd18a666559613d912be01a5 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-19 00:42:47,443 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..03b9116196e1a799dd18a666559613d912be01a5'
2025-09-19 00:42:47,446 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#536](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-09-19 00:42:47,448 [ scc.config] DEBUG Found github.token
2025-09-19 00:42:47,448 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-09-19 00:42:47,448 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-09-19 00:42:47,452 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:47,454 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-09-19 00:42:47,462 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-19 00:42:47,465 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-09-19 00:42:47,465 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-09-19 00:42:47,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:47,828 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-19 00:42:47,863 [ scc.git] DEBUG Get sha1 of %s
2025-09-19 00:42:47,864 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-19 00:42:47,865 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-19 00:42:47,901 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-19 00:42:47,904 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f89ac670f50> has no local changes
2025-09-19 00:42:47,904 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..03b9116
Previously merged:
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#536 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/)'
2025-09-19 00:42:47,909 [ scc.git] DEBUG [detached HEAD 408bade] merge master -Dorg -Ssuccess-only
2025-09-19 00:42:47,910 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:47,910 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-19 00:42:47,981 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-09-19 00:42:48,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:48,238 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-09-19 00:42:48,240 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-09-19 00:42:48,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:48,635 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-09-19 00:42:48,637 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-09-19 00:42:49,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:49,199 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-09-19 00:42:49,201 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-09-19 00:42:49,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:49,608 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-09-19 00:42:50,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:50,008 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-09-19 00:42:50,009 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-09-19 00:42:50,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:50,561 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-09-19 00:42:50,562 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-09-19 00:42:50,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:50,973 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-09-19 00:42:50,975 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-09-19 00:42:51,354 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:51,358 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-09-19 00:42:51,360 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-09-19 00:42:51,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:51,749 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-09-19 00:42:51,751 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-09-19 00:42:52,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:52,141 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-09-19 00:42:52,143 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-09-19 00:42:52,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:52,526 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-09-19 00:42:52,528 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-09-19 00:42:52,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:52,931 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-09-19 00:42:52,933 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-09-19 00:42:53,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:53,384 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-09-19 00:42:53,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:53,790 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-09-19 00:42:54,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:54,181 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-09-19 00:42:54,183 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-09-19 00:42:54,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:54,743 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-09-19 00:42:55,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:55,140 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-09-19 00:42:55,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:55,528 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-09-19 00:42:55,530 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-09-19 00:42:55,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:55,983 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-09-19 00:42:55,985 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-09-19 00:42:56,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:56,370 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-09-19 00:42:56,372 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-09-19 00:42:56,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:56,775 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-09-19 00:42:56,777 [ scc.config] DEBUG Found submodule.scripts.url
2025-09-19 00:42:57,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-19 00:42:57,189 [ scc.config] DEBUG Found submodule.scripts.branch
2025-09-19 00:42:57,189 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-19 00:42:57,264 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f89ad058150> has local changes
2025-09-19 00:42:57,264 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
- PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..37ea700
Previously merged:
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 181 will-moore 'Add labels support for import'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..66607c99
Previously merged:
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 616 Rdornier 'Fix labels around border'
Conflicting PRs (not included):
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
- PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..00e0207
Previously merged:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..03b9116
Previously merged:
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#536 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/536/)'
2025-09-19 00:42:57,274 [ scc.git] DEBUG [detached HEAD e024c96] merge master -Dorg -Ssuccess-only
2025-09-19 00:42:57,274 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-09-19 00:42:57,274 [ scc.merge] INFO Repository: ome/omero-plugins
2025-09-19 00:42:57,274 [ scc.merge] INFO Already up to date.
2025-09-19 00:42:57,274 [ scc.merge] INFO
2025-09-19 00:42:57,274 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,274 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-09-19 00:42:57,275 [ scc.merge] INFO
2025-09-19 00:42:57,275 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-09-19 00:42:57,275 [ scc.merge] INFO Already up to date.
2025-09-19 00:42:57,275 [ scc.merge] INFO
2025-09-19 00:42:57,275 [ scc.merge] INFO
2025-09-19 00:42:57,275 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-09-19 00:42:57,275 [ scc.merge] INFO Excluded PRs:
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-09-19 00:42:57,275 [ scc.merge] INFO Already up to date.
2025-09-19 00:42:57,275 [ scc.merge] INFO
2025-09-19 00:42:57,275 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:42:57,275 [ scc.merge] INFO
2025-09-19 00:42:57,275 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-09-19 00:42:57,275 [ scc.merge] INFO Excluded PRs:
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-09-19 00:42:57,275 [ scc.merge] INFO Already up to date.
2025-09-19 00:42:57,275 [ scc.merge] INFO
2025-09-19 00:42:57,275 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:42:57,275 [ scc.merge] INFO
2025-09-19 00:42:57,275 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-09-19 00:42:57,275 [ scc.merge] INFO Excluded PRs:
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-09-19 00:42:57,275 [ scc.merge] INFO Updating 11d3587..37ea700
2025-09-19 00:42:57,275 [ scc.merge] INFO Previously merged:
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-19 00:42:57,275 [ scc.merge] INFO
2025-09-19 00:42:57,275 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2025-09-19 00:42:57,275 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2025-09-19 00:42:57,275 [ scc.merge] INFO
2025-09-19 00:42:57,276 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-09-19 00:42:57,276 [ scc.merge] INFO
2025-09-19 00:42:57,276 [ scc.merge] INFO Repository: ome/omero-figure
2025-09-19 00:42:57,276 [ scc.merge] INFO Excluded PRs:
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-09-19 00:42:57,276 [ scc.merge] INFO Updating 9cc36cde..66607c99
2025-09-19 00:42:57,276 [ scc.merge] INFO Previously merged:
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-19 00:42:57,276 [ scc.merge] INFO
2025-09-19 00:42:57,276 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-09-19 00:42:57,276 [ scc.merge] INFO
2025-09-19 00:42:57,276 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6'
2025-09-19 00:42:57,276 [ scc.merge] INFO
2025-09-19 00:42:57,276 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-09-19 00:42:57,276 [ scc.merge] INFO Already up to date.
2025-09-19 00:42:57,276 [ scc.merge] INFO
2025-09-19 00:42:57,276 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:42:57,276 [ scc.merge] INFO
2025-09-19 00:42:57,276 [ scc.merge] INFO Repository: ome/omero-gallery
2025-09-19 00:42:57,276 [ scc.merge] INFO Already up to date.
2025-09-19 00:42:57,276 [ scc.merge] INFO
2025-09-19 00:42:57,276 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-09-19 00:42:57,276 [ scc.merge] INFO
2025-09-19 00:42:57,276 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-09-19 00:42:57,276 [ scc.merge] INFO
2025-09-19 00:42:57,276 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-09-19 00:42:57,276 [ scc.merge] INFO Excluded PRs:
2025-09-19 00:42:57,276 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-09-19 00:42:57,277 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-09-19 00:42:57,277 [ scc.merge] INFO Previously merged:
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-19 00:42:57,277 [ scc.merge] INFO
2025-09-19 00:42:57,277 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-09-19 00:42:57,277 [ scc.merge] INFO
2025-09-19 00:42:57,277 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-09-19 00:42:57,277 [ scc.merge] INFO
2025-09-19 00:42:57,277 [ scc.merge] INFO Repository: ome/omero-mapr
2025-09-19 00:42:57,277 [ scc.merge] INFO Excluded PRs:
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-09-19 00:42:57,277 [ scc.merge] INFO Already up to date.
2025-09-19 00:42:57,277 [ scc.merge] INFO
2025-09-19 00:42:57,277 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-19 00:42:57,277 [ scc.merge] INFO
2025-09-19 00:42:57,277 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:42:57,277 [ scc.merge] INFO
2025-09-19 00:42:57,277 [ scc.merge] INFO Repository: ome/omero-metadata
2025-09-19 00:42:57,277 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-09-19 00:42:57,277 [ scc.merge] INFO Previously merged:
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-19 00:42:57,277 [ scc.merge] INFO
2025-09-19 00:42:57,277 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-09-19 00:42:57,277 [ scc.merge] INFO
2025-09-19 00:42:57,277 [ scc.merge] INFO Repository: ome/omero-parade
2025-09-19 00:42:57,277 [ scc.merge] INFO Excluded PRs:
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-09-19 00:42:57,277 [ scc.merge] INFO Already up to date.
2025-09-19 00:42:57,277 [ scc.merge] INFO
2025-09-19 00:42:57,277 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-09-19 00:42:57,277 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-19 00:42:57,277 [ scc.merge] INFO
2025-09-19 00:42:57,277 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-09-19 00:42:57,277 [ scc.merge] INFO Already up to date.
2025-09-19 00:42:57,278 [ scc.merge] INFO
2025-09-19 00:42:57,278 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,278 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:42:57,278 [ scc.merge] INFO
2025-09-19 00:42:57,278 [ scc.merge] INFO Repository: ome/omero-rois
2025-09-19 00:42:57,278 [ scc.merge] INFO Excluded PRs:
2025-09-19 00:42:57,278 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-09-19 00:42:57,278 [ scc.merge] INFO Already up to date.
2025-09-19 00:42:57,278 [ scc.merge] INFO
2025-09-19 00:42:57,278 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,278 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-09-19 00:42:57,278 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:42:57,278 [ scc.merge] INFO
2025-09-19 00:42:57,278 [ scc.merge] INFO Repository: ome/omero-signup
2025-09-19 00:42:57,278 [ scc.merge] INFO Already up to date.
2025-09-19 00:42:57,278 [ scc.merge] INFO
2025-09-19 00:42:57,278 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,278 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:42:57,278 [ scc.merge] INFO
2025-09-19 00:42:57,278 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-19 00:42:57,278 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-09-19 00:42:57,278 [ scc.merge] INFO
2025-09-19 00:42:57,278 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-09-19 00:42:57,278 [ scc.merge] INFO Excluded PRs:
2025-09-19 00:42:57,278 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-09-19 00:42:57,278 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-09-19 00:42:57,278 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-09-19 00:42:57,278 [ scc.merge] INFO Already up to date.
2025-09-19 00:42:57,278 [ scc.merge] INFO
2025-09-19 00:42:57,278 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,278 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-09-19 00:42:57,278 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-09-19 00:42:57,278 [ scc.merge] INFO
2025-09-19 00:42:57,278 [ scc.merge] INFO Repository: ome/omero-upload
2025-09-19 00:42:57,278 [ scc.merge] INFO Already up to date.
2025-09-19 00:42:57,278 [ scc.merge] INFO
2025-09-19 00:42:57,278 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,278 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:42:57,278 [ scc.merge] INFO
2025-09-19 00:42:57,278 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-09-19 00:42:57,278 [ scc.merge] INFO Updating deab817..160d894
2025-09-19 00:42:57,278 [ scc.merge] INFO Previously merged:
2025-09-19 00:42:57,278 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-09-19 00:42:57,278 [ scc.merge] INFO
2025-09-19 00:42:57,278 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,278 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:42:57,278 [ scc.merge] INFO
2025-09-19 00:42:57,278 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-09-19 00:42:57,278 [ scc.merge] INFO Excluded PRs:
2025-09-19 00:42:57,278 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-09-19 00:42:57,278 [ scc.merge] INFO Updating 8f3c313..00e0207
2025-09-19 00:42:57,278 [ scc.merge] INFO Previously merged:
2025-09-19 00:42:57,278 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-09-19 00:42:57,278 [ scc.merge] INFO
2025-09-19 00:42:57,279 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,279 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-09-19 00:42:57,279 [ scc.merge] INFO
2025-09-19 00:42:57,279 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-19 00:42:57,279 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-09-19 00:42:57,279 [ scc.merge] INFO
2025-09-19 00:42:57,279 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-09-19 00:42:57,279 [ scc.merge] INFO Already up to date.
2025-09-19 00:42:57,279 [ scc.merge] INFO
2025-09-19 00:42:57,279 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,279 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:42:57,279 [ scc.merge] INFO
2025-09-19 00:42:57,279 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-09-19 00:42:57,279 [ scc.merge] INFO Already up to date.
2025-09-19 00:42:57,279 [ scc.merge] INFO
2025-09-19 00:42:57,279 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,279 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-19 00:42:57,279 [ scc.merge] INFO
2025-09-19 00:42:57,279 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-09-19 00:42:57,279 [ scc.merge] INFO Already up to date.
2025-09-19 00:42:57,279 [ scc.merge] INFO
2025-09-19 00:42:57,279 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-19 00:42:57,279 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-09-19 00:42:57,279 [ scc.merge] INFO
2025-09-19 00:42:57,279 [ scc.merge] INFO Repository: ome/scripts
2025-09-19 00:42:57,279 [ scc.merge] INFO Excluded PRs:
2025-09-19 00:42:57,279 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-09-19 00:42:57,279 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-09-19 00:42:57,279 [ scc.merge] INFO Updating 4b4c755..03b9116
2025-09-19 00:42:57,279 [ scc.merge] INFO Previously merged:
2025-09-19 00:42:57,279 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2025-09-19 00:42:57,279 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-09-19 00:42:57,279 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-09-19 00:42:57,279 [ scc.merge] INFO
2025-09-19 00:42:57,279 [ scc.merge] INFO Merged PRs:
2025-09-19 00:42:57,279 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-09-19 00:42:57,279 [ scc.merge] INFO
2025-09-19 00:42:57,279 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-19 00:42:57,279 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-09-19 00:42:57,279 [ scc.merge] INFO
2025-09-19 00:42:57,279 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-09-19 00:42:57,279 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,281 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-09-19 00:42:57,281 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,283 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,283 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-09-19 00:42:57,283 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,285 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,285 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-09-19 00:42:57,285 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,287 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,287 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-09-19 00:42:57,287 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-09-19 00:42:57,289 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,291 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,291 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-09-19 00:42:57,291 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,294 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,294 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-09-19 00:42:57,294 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,296 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,296 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-09-19 00:42:57,296 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,298 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,298 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-09-19 00:42:57,298 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,300 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,301 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-09-19 00:42:57,301 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,303 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,303 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-09-19 00:42:57,303 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,304 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,305 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-09-19 00:42:57,305 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,306 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,306 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-09-19 00:42:57,307 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,308 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,309 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-09-19 00:42:57,309 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,311 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,311 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-09-19 00:42:57,311 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,313 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,313 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-09-19 00:42:57,313 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,315 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,315 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-09-19 00:42:57,315 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,317 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,317 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-09-19 00:42:57,317 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,319 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,319 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-09-19 00:42:57,319 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,321 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,321 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-09-19 00:42:57,321 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,323 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,323 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-09-19 00:42:57,323 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,325 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-19 00:42:57,325 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-09-19 00:42:57,325 [ scc.git] DEBUG Calling 'git remote'
2025-09-19 00:42:57,327 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 4b6d0a1] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD d103e0b] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-09-19 00:43:43,403 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-09-19 00:43:52,855 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-09-19 00:43:55,341 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-09-19 00:44:00,122 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-09-19 00:44:40,779 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/9161e9ff/images/svgs/logo.svg){kind=logo}
