Skipping 208 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2025-09-21 00:39:24,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2025-09-21 00:39:24,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:39:24,862 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-09-21 00:39:24,862 [ scc.repo] DEBUG ## Branches found:
2025-09-21 00:39:24,862 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-09-21 00:39:24,862 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:39:24,862 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:24,864 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-21 00:39:24,866 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-21 00:39:24,867 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-21 00:39:24,869 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-21 00:39:24,876 [ scc.git] DEBUG Updating 3cd120c..55060a2
2025-09-21 00:39:25,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2025-09-21 00:39:25,578 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2025-09-21 00:39:25,877 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-09-21 00:39:25,877 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2025-09-21 00:39:25,881 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2025-09-21 00:39:26,155 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2025-09-21 00:39:26,155 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2025-09-21 00:39:26,159 [ scc.git] DEBUG ## Unique users: []
2025-09-21 00:39:26,159 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:39:26,159 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:26,161 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-21 00:39:26,165 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:26,168 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-21 00:39:26,180 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2025-09-21 00:39:26,180 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2025-09-21 00:39:26,180 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-09-21 00:39:26,180 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-09-21 00:39:26,180 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-21 00:39:26,180 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-21 00:39:26,182 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-21 00:39:26,186 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-09-21 00:39:26,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:39:26,324 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2025-09-21 00:39:26,328 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-21 00:39:26,330 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#538](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2025-09-21 00:39:26,332 [ scc.config] DEBUG Found github.token
2025-09-21 00:39:26,332 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2025-09-21 00:39:26,332 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-21 00:39:26,336 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:26,338 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-21 00:39:26,352 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2025-09-21 00:39:26,352 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2025-09-21 00:39:26,352 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2025-09-21 00:39:26,352 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-21 00:39:26,352 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-21 00:39:26,355 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-21 00:39:26,359 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2025-09-21 00:39:26,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:39:26,734 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2025-09-21 00:39:26,737 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2025-09-21 00:39:26,740 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#538](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2025-09-21 00:39:26,742 [ scc.config] DEBUG Found github.token
2025-09-21 00:39:26,742 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2025-09-21 00:39:26,742 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-21 00:39:26,777 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:39:26,777 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:26,779 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-21 00:39:26,813 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-21 00:39:26,817 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fbcd0c18110> has no local changes
2025-09-21 00:39:26,817 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#538 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/)'
2025-09-21 00:39:26,823 [ scc.git] DEBUG [detached HEAD 374fba5] merge master -Dorg -Ssuccess-only
2025-09-21 00:39:26,823 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:39:26,824 [ scc.repo] DEBUG ## PRs found:
2025-09-21 00:39:27,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2025-09-21 00:39:27,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2025-09-21 00:39:28,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-09-21 00:39:28,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:39:29,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-21 00:39:29,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2025-09-21 00:39:30,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:39:30,152 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-21 00:39:30,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2025-09-21 00:39:30,628 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-21 00:39:31,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-09-21 00:39:31,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:39:32,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-21 00:39:32,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2025-09-21 00:39:33,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:39:33,151 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-09-21 00:39:33,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2025-09-21 00:39:33,635 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-21 00:39:34,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-09-21 00:39:34,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:39:35,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-21 00:39:35,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2025-09-21 00:39:36,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:39:36,119 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-09-21 00:39:36,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2025-09-21 00:39:37,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2025-09-21 00:39:37,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2025-09-21 00:39:38,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2025-09-21 00:39:38,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2025-09-21 00:39:38,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2025-09-21 00:39:39,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2025-09-21 00:39:39,413 [ scc.repo] DEBUG ## Branches found:
2025-09-21 00:39:39,413 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-09-21 00:39:39,413 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:39:39,413 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:39,415 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-21 00:39:39,418 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-21 00:39:39,418 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-21 00:39:39,420 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-21 00:39:39,423 [ scc.git] DEBUG Already up to date.
2025-09-21 00:39:39,423 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2025-09-21 00:39:39,722 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-21 00:39:39,722 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2025-09-21 00:39:39,727 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2025-09-21 00:39:40,008 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-21 00:39:40,008 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2025-09-21 00:39:40,012 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2025-09-21 00:39:40,291 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2025-09-21 00:39:40,291 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2025-09-21 00:39:40,295 [ scc.git] DEBUG ## Unique users: []
2025-09-21 00:39:40,295 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:39:40,295 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:40,298 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2025-09-21 00:39:40,300 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:40,302 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2025-09-21 00:39:40,309 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-21 00:39:40,312 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2025-09-21 00:39:40,313 [ scc.git] DEBUG package.json | 2 +-
2025-09-21 00:39:40,313 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2025-09-21 00:39:40,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:39:40,450 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2025-09-21 00:39:40,453 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:40,455 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2025-09-21 00:39:40,463 [ scc.git] DEBUG Auto-merging package-lock.json
2025-09-21 00:39:40,463 [ scc.git] DEBUG Auto-merging package.json
2025-09-21 00:39:40,464 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-21 00:39:40,467 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2025-09-21 00:39:40,467 [ scc.git] DEBUG package.json | 2 +-
2025-09-21 00:39:40,467 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2025-09-21 00:39:40,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:39:40,842 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-09-21 00:39:40,844 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:40,846 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2025-09-21 00:39:40,853 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-21 00:39:40,856 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-21 00:39:40,856 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-21 00:39:41,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:39:41,226 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-21 00:39:41,262 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:39:41,262 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:41,264 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-21 00:39:41,298 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-21 00:39:41,302 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fbcd2e35690> has no local changes
2025-09-21 00:39:41,302 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#538 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/)'
2025-09-21 00:39:41,307 [ scc.git] DEBUG [detached HEAD 9dfc20f] merge master -Dorg -Ssuccess-only
2025-09-21 00:39:41,307 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:39:41,307 [ scc.repo] DEBUG ## PRs found:
2025-09-21 00:39:41,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2025-09-21 00:39:42,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2025-09-21 00:39:42,237 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-21 00:39:42,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-09-21 00:39:43,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:39:43,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-21 00:39:44,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2025-09-21 00:39:44,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:39:44,748 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:39:44,748 [ scc.repo] DEBUG ## Branches found:
2025-09-21 00:39:44,748 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-09-21 00:39:44,748 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:39:44,749 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:44,751 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-21 00:39:44,753 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-21 00:39:44,753 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-21 00:39:44,756 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-21 00:39:44,759 [ scc.git] DEBUG Already up to date.
2025-09-21 00:39:44,759 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2025-09-21 00:39:45,042 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2025-09-21 00:39:45,042 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2025-09-21 00:39:45,046 [ scc.git] DEBUG ## Unique users: []
2025-09-21 00:39:45,046 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:39:45,046 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:45,048 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2025-09-21 00:39:45,051 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:45,053 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2025-09-21 00:39:45,059 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-21 00:39:45,061 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-21 00:39:45,061 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-21 00:39:45,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:39:45,227 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-21 00:39:45,263 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:39:45,263 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:45,265 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-21 00:39:45,299 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-21 00:39:45,302 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fbcd0c3a090> has no local changes
2025-09-21 00:39:45,302 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#538 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/)'
2025-09-21 00:39:45,307 [ scc.git] DEBUG [detached HEAD 7f364bd] merge master -Dorg -Ssuccess-only
2025-09-21 00:39:45,308 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:39:45,308 [ scc.repo] DEBUG ## PRs found:
2025-09-21 00:39:45,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2025-09-21 00:39:46,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2025-09-21 00:39:46,304 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-21 00:39:46,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-09-21 00:39:47,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:39:47,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-21 00:39:48,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-09-21 00:39:49,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2025-09-21 00:39:49,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2025-09-21 00:39:50,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2025-09-21 00:39:50,023 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:39:50,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2025-09-21 00:39:50,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2025-09-21 00:39:51,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-21 00:39:51,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:39:52,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-21 00:39:52,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-21 00:39:53,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2025-09-21 00:39:53,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2025-09-21 00:39:54,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2025-09-21 00:39:54,354 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2025-09-21 00:39:54,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2025-09-21 00:39:54,854 [ scc.repo] DEBUG ## Branches found:
2025-09-21 00:39:54,854 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-09-21 00:39:54,854 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:39:54,854 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:54,857 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-21 00:39:54,859 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-21 00:39:54,859 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-21 00:39:54,862 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-21 00:39:54,865 [ scc.git] DEBUG Already up to date.
2025-09-21 00:39:54,865 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2025-09-21 00:39:55,147 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-09-21 00:39:55,147 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2025-09-21 00:39:55,150 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2025-09-21 00:39:55,425 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2025-09-21 00:39:55,425 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2025-09-21 00:39:55,429 [ scc.git] DEBUG ## Unique users: []
2025-09-21 00:39:55,429 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:39:55,429 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:55,432 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2025-09-21 00:39:55,434 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:55,436 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2025-09-21 00:39:55,443 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-21 00:39:55,445 [ scc.git] DEBUG setup.py | 4 +-
2025-09-21 00:39:55,445 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2025-09-21 00:39:55,445 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2025-09-21 00:39:55,445 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2025-09-21 00:39:55,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:39:55,594 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2025-09-21 00:39:55,597 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:55,599 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2025-09-21 00:39:55,605 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-21 00:39:55,607 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-21 00:39:55,607 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-21 00:39:56,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:39:56,399 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-21 00:39:56,435 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:39:56,435 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:39:56,437 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-21 00:39:56,471 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-21 00:39:56,474 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fbcd0c80a10> has no local changes
2025-09-21 00:39:56,474 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#538 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/)'
2025-09-21 00:39:56,479 [ scc.git] DEBUG [detached HEAD 2a6f327] merge master -Dorg -Ssuccess-only
2025-09-21 00:39:56,479 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:39:56,479 [ scc.repo] DEBUG ## PRs found:
2025-09-21 00:39:57,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2025-09-21 00:39:57,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2025-09-21 00:39:57,549 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-21 00:39:58,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-09-21 00:39:58,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:39:59,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-21 00:39:59,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2025-09-21 00:40:00,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:40:00,161 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:40:00,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2025-09-21 00:40:01,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2025-09-21 00:40:01,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-09-21 00:40:02,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:40:02,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2025-09-21 00:40:03,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:40:03,073 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2025-09-21 00:40:03,073 [ scc.repo] DEBUG ## Branches found:
2025-09-21 00:40:03,073 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-09-21 00:40:03,073 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:03,074 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:03,076 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-21 00:40:03,078 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-21 00:40:03,078 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-21 00:40:03,081 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-21 00:40:03,084 [ scc.git] DEBUG Already up to date.
2025-09-21 00:40:03,084 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-09-21 00:40:03,365 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-09-21 00:40:03,365 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-09-21 00:40:03,369 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-09-21 00:40:03,645 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2025-09-21 00:40:03,645 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-09-21 00:40:03,649 [ scc.git] DEBUG ## Unique users: []
2025-09-21 00:40:03,649 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:03,649 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:03,652 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-21 00:40:03,655 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:03,657 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-21 00:40:03,664 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2025-09-21 00:40:03,664 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2025-09-21 00:40:03,664 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2025-09-21 00:40:03,664 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2025-09-21 00:40:03,664 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2025-09-21 00:40:03,664 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2025-09-21 00:40:03,664 [ scc.git] DEBUG Auto-merging setup.py
2025-09-21 00:40:03,664 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2025-09-21 00:40:03,664 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-21 00:40:03,665 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-21 00:40:03,667 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2025-09-21 00:40:03,670 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2025-09-21 00:40:03,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:03,805 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2025-09-21 00:40:03,808 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2025-09-21 00:40:03,811 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#538](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- setup.py
- omero_signup/urls.py
- omero_signup/views.py
--conflicts
2025-09-21 00:40:03,813 [ scc.config] DEBUG Found github.token
2025-09-21 00:40:03,813 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2025-09-21 00:40:03,813 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-09-21 00:40:03,815 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:03,817 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2025-09-21 00:40:03,823 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-21 00:40:03,826 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-21 00:40:03,826 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-21 00:40:04,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:04,206 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-21 00:40:04,241 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:04,241 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:04,243 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-21 00:40:04,278 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-21 00:40:04,281 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fbcd0c4b290> has no local changes
2025-09-21 00:40:04,281 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#538 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/)'
2025-09-21 00:40:04,286 [ scc.git] DEBUG [detached HEAD 86d23a8] merge master -Dorg -Ssuccess-only
2025-09-21 00:40:04,286 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:40:04,286 [ scc.repo] DEBUG ## PRs found:
2025-09-21 00:40:04,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2025-09-21 00:40:05,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None
2025-09-21 00:40:05,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-09-21 00:40:06,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:40:06,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-21 00:40:07,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None
2025-09-21 00:40:07,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:40:07,635 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps'
2025-09-21 00:40:08,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2025-09-21 00:40:08,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2025-09-21 00:40:09,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2025-09-21 00:40:09,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:40:10,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-21 00:40:10,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None
2025-09-21 00:40:11,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None
2025-09-21 00:40:11,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None
2025-09-21 00:40:12,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None
2025-09-21 00:40:12,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-09-21 00:40:13,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:40:13,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None
2025-09-21 00:40:13,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:40:13,958 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-09-21 00:40:13,958 [ scc.repo] DEBUG ## Branches found:
2025-09-21 00:40:13,958 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-09-21 00:40:13,959 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:13,959 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:13,961 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-21 00:40:13,963 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-21 00:40:13,963 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-21 00:40:13,966 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-21 00:40:13,968 [ scc.git] DEBUG Already up to date.
2025-09-21 00:40:13,968 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head'
2025-09-21 00:40:14,256 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-09-21 00:40:14,256 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD
2025-09-21 00:40:14,261 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head'
2025-09-21 00:40:14,545 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2025-09-21 00:40:14,545 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD
2025-09-21 00:40:14,548 [ scc.git] DEBUG ## Unique users: []
2025-09-21 00:40:14,548 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:14,549 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:14,551 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928'
2025-09-21 00:40:14,555 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:14,557 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928'
2025-09-21 00:40:14,566 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-21 00:40:14,569 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++
2025-09-21 00:40:14,569 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++
2025-09-21 00:40:14,570 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++
2025-09-21 00:40:14,570 [ scc.git] DEBUG idr/70-reset-password.sh | 1 +
2025-09-21 00:40:14,570 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 +
2025-09-21 00:40:14,570 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 +
2025-09-21 00:40:14,570 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++
2025-09-21 00:40:14,570 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++
2025-09-21 00:40:14,570 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++
2025-09-21 00:40:14,570 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++
2025-09-21 00:40:14,570 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++
2025-09-21 00:40:14,570 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++
2025-09-21 00:40:14,571 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++
2025-09-21 00:40:14,571 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++
2025-09-21 00:40:14,571 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++
2025-09-21 00:40:14,571 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++
2025-09-21 00:40:14,571 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++
2025-09-21 00:40:14,571 [ scc.git] DEBUG idr/omero/Dockerfile | 3 +
2025-09-21 00:40:14,571 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++
2025-09-21 00:40:14,571 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++
2025-09-21 00:40:14,571 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++
2025-09-21 00:40:14,571 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++
2025-09-21 00:40:14,571 [ scc.git] DEBUG 22 files changed, 824 insertions(+)
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr-compose.yml
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile
2025-09-21 00:40:14,571 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml
2025-09-21 00:40:14,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:14,710 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-09-21 00:40:14,713 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:14,715 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6'
2025-09-21 00:40:14,724 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-21 00:40:14,726 [ scc.git] DEBUG docker | 1 +
2025-09-21 00:40:14,726 [ scc.git] DEBUG 1 file changed, 1 insertion(+)
2025-09-21 00:40:15,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:15,103 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-21 00:40:15,139 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:15,139 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:15,141 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-21 00:40:15,178 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-21 00:40:15,182 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fbcd2dda890> has no local changes
2025-09-21 00:40:15,182 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Generated by OMERO-plugins-push#538 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/)'
2025-09-21 00:40:15,188 [ scc.git] DEBUG [detached HEAD f057ca2] merge master -Dorg -Ssuccess-only
2025-09-21 00:40:15,188 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:40:15,188 [ scc.repo] DEBUG ## PRs found:
2025-09-21 00:40:15,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2025-09-21 00:40:16,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2025-09-21 00:40:16,089 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-21 00:40:16,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-09-21 00:40:17,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:40:17,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-21 00:40:18,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2025-09-21 00:40:18,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:40:18,585 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:40:18,585 [ scc.repo] DEBUG ## Branches found:
2025-09-21 00:40:18,585 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-09-21 00:40:18,585 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:18,585 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:18,587 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-21 00:40:18,590 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-21 00:40:18,590 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-21 00:40:18,592 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-21 00:40:18,595 [ scc.git] DEBUG Already up to date.
2025-09-21 00:40:18,595 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2025-09-21 00:40:18,869 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2025-09-21 00:40:18,869 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2025-09-21 00:40:18,873 [ scc.git] DEBUG ## Unique users: []
2025-09-21 00:40:18,873 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:18,873 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:18,875 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-09-21 00:40:18,878 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:18,880 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2025-09-21 00:40:18,886 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-21 00:40:18,888 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-21 00:40:18,888 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-21 00:40:19,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:19,027 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-21 00:40:19,062 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:19,062 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:19,064 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-21 00:40:19,098 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-21 00:40:19,101 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fbcd0c71250> has no local changes
2025-09-21 00:40:19,101 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#538 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/)'
2025-09-21 00:40:19,106 [ scc.git] DEBUG [detached HEAD b1bc7db] merge master -Dorg -Ssuccess-only
2025-09-21 00:40:19,106 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:40:19,106 [ scc.repo] DEBUG ## PRs found:
2025-09-21 00:40:19,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2025-09-21 00:40:19,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2025-09-21 00:40:19,978 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-21 00:40:20,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-09-21 00:40:21,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:40:21,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-21 00:40:22,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2025-09-21 00:40:22,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:40:22,587 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:40:22,587 [ scc.repo] DEBUG ## Branches found:
2025-09-21 00:40:22,587 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-09-21 00:40:22,587 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:22,587 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:22,590 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-21 00:40:22,592 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-21 00:40:22,592 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-21 00:40:22,595 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-21 00:40:22,602 [ scc.git] DEBUG Updating deab817..160d894
2025-09-21 00:40:23,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2025-09-21 00:40:23,273 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2025-09-21 00:40:23,554 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2025-09-21 00:40:23,555 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2025-09-21 00:40:23,558 [ scc.git] DEBUG ## Unique users: []
2025-09-21 00:40:23,559 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:23,559 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:23,561 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-09-21 00:40:23,564 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:23,565 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2025-09-21 00:40:23,572 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-21 00:40:23,574 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-21 00:40:23,574 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-21 00:40:23,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:23,716 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-21 00:40:23,753 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:23,753 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:23,755 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-21 00:40:23,789 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-21 00:40:23,792 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fbcd0c50950> has no local changes
2025-09-21 00:40:23,792 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#538 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/)'
2025-09-21 00:40:23,798 [ scc.git] DEBUG [detached HEAD f847bfb] merge master -Dorg -Ssuccess-only
2025-09-21 00:40:23,798 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:40:23,798 [ scc.git] INFO Overriding base-branch from master to main
2025-09-21 00:40:23,798 [ scc.repo] DEBUG ## PRs found:
2025-09-21 00:40:24,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2025-09-21 00:40:24,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2025-09-21 00:40:25,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2025-09-21 00:40:25,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-09-21 00:40:26,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:40:26,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-21 00:40:27,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2025-09-21 00:40:27,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:40:27,541 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2025-09-21 00:40:28,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2025-09-21 00:40:28,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2025-09-21 00:40:29,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2025-09-21 00:40:29,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-09-21 00:40:30,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:40:30,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2025-09-21 00:40:31,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:40:31,191 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-09-21 00:40:31,192 [ scc.repo] DEBUG ## Branches found:
2025-09-21 00:40:31,192 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-09-21 00:40:31,192 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:31,192 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:31,194 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2025-09-21 00:40:31,196 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-21 00:40:31,196 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2025-09-21 00:40:31,199 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2025-09-21 00:40:31,206 [ scc.git] DEBUG Updating 8f3c313..00e0207
2025-09-21 00:40:31,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2025-09-21 00:40:31,817 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2025-09-21 00:40:32,114 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-21 00:40:32,114 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2025-09-21 00:40:32,118 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2025-09-21 00:40:32,398 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2025-09-21 00:40:32,398 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2025-09-21 00:40:32,401 [ scc.git] DEBUG ## Unique users: []
2025-09-21 00:40:32,402 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:32,402 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:32,404 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-21 00:40:32,406 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:32,408 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-21 00:40:32,416 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2025-09-21 00:40:32,416 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2025-09-21 00:40:32,416 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-09-21 00:40:32,416 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-21 00:40:32,416 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-21 00:40:32,419 [ scc.git] DEBUG Calling 'git reset --hard 00e02072dc29b04eba14c080ca8a0175a1499c15'
2025-09-21 00:40:32,422 [ scc.git] DEBUG HEAD is now at 00e0207 Merge pull request #20 from will-moore/zarr_python_v3
2025-09-21 00:40:32,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:32,563 [ scc.git] DEBUG Calling 'git merge-base 00e02072dc29b04eba14c080ca8a0175a1499c15 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2025-09-21 00:40:32,565 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..00e02072dc29b04eba14c080ca8a0175a1499c15'
2025-09-21 00:40:32,568 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#538](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2025-09-21 00:40:32,570 [ scc.config] DEBUG Found github.token
2025-09-21 00:40:32,570 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2025-09-21 00:40:32,570 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-09-21 00:40:32,572 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:32,574 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2025-09-21 00:40:32,582 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2025-09-21 00:40:32,582 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-21 00:40:32,585 [ scc.git] DEBUG README.rst | 3 +
2025-09-21 00:40:32,585 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2025-09-21 00:40:32,585 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2025-09-21 00:40:32,585 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2025-09-21 00:40:32,585 [ scc.git] DEBUG setup.py | 5 +-
2025-09-21 00:40:32,585 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2025-09-21 00:40:32,585 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2025-09-21 00:40:32,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:32,962 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-21 00:40:32,998 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:32,998 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:33,000 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-21 00:40:33,035 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-21 00:40:33,038 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fbcd0ccb510> has no local changes
2025-09-21 00:40:33,038 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..00e0207
Previously merged:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#538 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/)'
2025-09-21 00:40:33,043 [ scc.git] DEBUG [detached HEAD 74c761d] merge master -Dorg -Ssuccess-only
2025-09-21 00:40:33,043 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:40:33,043 [ scc.repo] DEBUG ## PRs found:
2025-09-21 00:40:33,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2025-09-21 00:40:33,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2025-09-21 00:40:33,942 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-21 00:40:34,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-09-21 00:40:35,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:40:35,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-21 00:40:36,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2025-09-21 00:40:36,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:40:36,463 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:40:36,463 [ scc.repo] DEBUG ## Branches found:
2025-09-21 00:40:36,463 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-09-21 00:40:36,463 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:36,463 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:36,466 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-21 00:40:36,468 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-21 00:40:36,468 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-21 00:40:36,470 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-21 00:40:36,473 [ scc.git] DEBUG Already up to date.
2025-09-21 00:40:36,473 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2025-09-21 00:40:36,767 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2025-09-21 00:40:36,767 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2025-09-21 00:40:36,771 [ scc.git] DEBUG ## Unique users: []
2025-09-21 00:40:36,771 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:36,771 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:36,773 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-09-21 00:40:36,776 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:36,778 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2025-09-21 00:40:36,784 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-21 00:40:36,787 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-21 00:40:36,787 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-21 00:40:36,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:36,920 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-21 00:40:36,956 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:36,956 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:36,958 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-21 00:40:36,992 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-21 00:40:36,995 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fbcd0ce9090> has no local changes
2025-09-21 00:40:36,995 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#538 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/)'
2025-09-21 00:40:37,000 [ scc.git] DEBUG [detached HEAD faa9309] merge master -Dorg -Ssuccess-only
2025-09-21 00:40:37,001 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:40:37,001 [ scc.repo] DEBUG ## PRs found:
2025-09-21 00:40:37,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2025-09-21 00:40:37,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2025-09-21 00:40:37,970 [ scc.repo] DEBUG # ... Include label: dependencies
2025-09-21 00:40:38,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-09-21 00:40:38,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:40:39,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-21 00:40:40,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2025-09-21 00:40:40,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:40:40,542 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:40:40,542 [ scc.repo] DEBUG ## Branches found:
2025-09-21 00:40:40,542 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-09-21 00:40:40,542 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:40,542 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:40,545 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-21 00:40:40,547 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-21 00:40:40,547 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-21 00:40:40,550 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-21 00:40:40,552 [ scc.git] DEBUG Already up to date.
2025-09-21 00:40:40,552 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2025-09-21 00:40:40,837 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2025-09-21 00:40:40,837 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2025-09-21 00:40:40,841 [ scc.git] DEBUG ## Unique users: []
2025-09-21 00:40:40,841 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:40,841 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:40,843 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-09-21 00:40:40,845 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:40,847 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2025-09-21 00:40:40,853 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-21 00:40:40,856 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2025-09-21 00:40:40,856 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2025-09-21 00:40:41,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:41,437 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-21 00:40:41,474 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:41,474 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:41,476 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-21 00:40:41,511 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-21 00:40:41,514 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fbcd0cff650> has no local changes
2025-09-21 00:40:41,514 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#538 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/)'
2025-09-21 00:40:41,519 [ scc.git] DEBUG [detached HEAD 17889b5] merge master -Dorg -Ssuccess-only
2025-09-21 00:40:41,519 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:40:41,519 [ scc.repo] DEBUG ## PRs found:
2025-09-21 00:40:41,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None
2025-09-21 00:40:42,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None
2025-09-21 00:40:42,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None
2025-09-21 00:40:43,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-09-21 00:40:43,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:40:44,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None
2025-09-21 00:40:44,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:40:44,757 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly'
2025-09-21 00:40:44,757 [ scc.repo] DEBUG ## Branches found:
2025-09-21 00:40:44,757 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-09-21 00:40:44,757 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:44,757 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:44,760 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2025-09-21 00:40:44,762 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-21 00:40:44,762 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2025-09-21 00:40:44,764 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2025-09-21 00:40:44,767 [ scc.git] DEBUG Already up to date.
2025-09-21 00:40:44,767 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head'
2025-09-21 00:40:45,052 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway
2025-09-21 00:40:45,052 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD
2025-09-21 00:40:45,056 [ scc.git] DEBUG ## Unique users: []
2025-09-21 00:40:45,056 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:45,057 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:45,059 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-21 00:40:45,061 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:45,063 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-21 00:40:45,070 [ scc.git] DEBUG Auto-merging Dockerfile
2025-09-21 00:40:45,071 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile
2025-09-21 00:40:45,071 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-21 00:40:45,071 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-21 00:40:45,073 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-09-21 00:40:45,077 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2025-09-21 00:40:45,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:45,219 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7'
2025-09-21 00:40:45,221 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9'
2025-09-21 00:40:45,224 [ scc.git] INFO - PR 100 dominikl 'Run tests properly'
Conflicting PR. Removed from build [OMERO-plugins-push#538](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/consoleText) for more details.
Possible conflicts:
- Upstream changes
- Dockerfile
--conflicts
2025-09-21 00:40:45,226 [ scc.config] DEBUG Found github.token
2025-09-21 00:40:45,226 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts.
2025-09-21 00:40:45,226 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-21 00:40:45,262 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:45,262 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:45,264 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-21 00:40:45,300 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-21 00:40:45,303 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fbcd0cffed0> has no local changes
2025-09-21 00:40:45,303 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Generated by OMERO-plugins-push#538 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/)'
2025-09-21 00:40:45,309 [ scc.git] DEBUG [detached HEAD d52a390] merge master -Dorg -Ssuccess-only
2025-09-21 00:40:45,309 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:40:45,310 [ scc.git] INFO Overriding base-branch from master to develop
2025-09-21 00:40:45,310 [ scc.repo] DEBUG ## PRs found:
2025-09-21 00:40:45,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2025-09-21 00:40:46,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None
2025-09-21 00:40:46,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None
2025-09-21 00:40:47,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-09-21 00:40:47,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:40:48,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None
2025-09-21 00:40:48,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None
2025-09-21 00:40:49,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:40:49,032 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-09-21 00:40:49,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None
2025-09-21 00:40:50,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None
2025-09-21 00:40:50,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-09-21 00:40:50,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2025-09-21 00:40:51,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None
2025-09-21 00:40:51,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2
2025-09-21 00:40:51,803 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-09-21 00:40:52,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2025-09-21 00:40:52,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2025-09-21 00:40:53,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None
2025-09-21 00:40:53,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None
2025-09-21 00:40:53,829 [ scc.repo] DEBUG ## Branches found:
2025-09-21 00:40:53,829 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-09-21 00:40:53,829 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:53,829 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:53,832 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2025-09-21 00:40:53,834 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2025-09-21 00:40:53,834 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2025-09-21 00:40:53,837 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2025-09-21 00:40:53,846 [ scc.git] DEBUG Updating 4b4c755..03b9116
2025-09-21 00:40:54,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2025-09-21 00:40:55,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2025-09-21 00:40:55,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2025-09-21 00:40:55,796 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head'
2025-09-21 00:40:56,093 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-09-21 00:40:56,093 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD
2025-09-21 00:40:56,097 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head'
2025-09-21 00:40:56,385 [ scc.git] DEBUG From https://github.com/ome/scripts
2025-09-21 00:40:56,385 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD
2025-09-21 00:40:56,388 [ scc.git] DEBUG ## Unique users: []
2025-09-21 00:40:56,388 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:56,388 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:56,390 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-21 00:40:56,396 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:56,398 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-21 00:40:56,408 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree.
2025-09-21 00:40:56,408 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2025-09-21 00:40:56,408 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2025-09-21 00:40:56,411 [ scc.git] DEBUG Calling 'git reset --hard 03b9116196e1a799dd18a666559613d912be01a5'
2025-09-21 00:40:56,414 [ scc.git] DEBUG HEAD is now at 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0
2025-09-21 00:40:56,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:56,575 [ scc.git] DEBUG Calling 'git merge-base 03b9116196e1a799dd18a666559613d912be01a5 1fd6030669613cdb8879cfe6395db8c820fdcf19'
2025-09-21 00:40:56,580 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..03b9116196e1a799dd18a666559613d912be01a5'
2025-09-21 00:40:56,584 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Conflicting PR. Removed from build [OMERO-plugins-push#538](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero/annotation_scripts/KeyVal_to_csv.py
--conflicts
2025-09-21 00:40:56,586 [ scc.config] DEBUG Found github.token
2025-09-21 00:40:56,586 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts.
2025-09-21 00:40:56,586 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-09-21 00:40:56,590 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:56,592 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8'
2025-09-21 00:40:56,600 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2025-09-21 00:40:56,603 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++-
2025-09-21 00:40:56,603 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-)
2025-09-21 00:40:56,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:56,975 [ scc.git] DEBUG Calling 'git submodule update'
2025-09-21 00:40:57,012 [ scc.git] DEBUG Get sha1 of %s
2025-09-21 00:40:57,012 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2025-09-21 00:40:57,014 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-21 00:40:57,048 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-21 00:40:57,051 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fbcd02e5090> has no local changes
2025-09-21 00:40:57,051 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..03b9116
Previously merged:
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#538 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/)'
2025-09-21 00:40:57,057 [ scc.git] DEBUG [detached HEAD 8341138] merge master -Dorg -Ssuccess-only
2025-09-21 00:40:57,057 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:40:57,057 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2025-09-21 00:40:57,126 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2025-09-21 00:40:57,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:57,476 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2025-09-21 00:40:57,477 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2025-09-21 00:40:57,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:57,875 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2025-09-21 00:40:57,877 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2025-09-21 00:40:58,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:58,261 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2025-09-21 00:40:58,263 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2025-09-21 00:40:58,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:58,657 [ scc.config] DEBUG Found submodule.omero-figure.url
2025-09-21 00:40:59,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:59,061 [ scc.config] DEBUG Found submodule.omero-figure.branch
2025-09-21 00:40:59,062 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2025-09-21 00:40:59,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:59,446 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2025-09-21 00:40:59,448 [ scc.config] DEBUG Found submodule.omero-gallery.url
2025-09-21 00:40:59,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:40:59,846 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2025-09-21 00:40:59,848 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2025-09-21 00:41:00,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:41:00,251 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2025-09-21 00:41:00,253 [ scc.config] DEBUG Found submodule.omero-mapr.url
2025-09-21 00:41:00,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:41:00,639 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2025-09-21 00:41:00,641 [ scc.config] DEBUG Found submodule.omero-metadata.url
2025-09-21 00:41:01,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:41:01,049 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2025-09-21 00:41:01,051 [ scc.config] DEBUG Found submodule.omero-parade.url
2025-09-21 00:41:01,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:41:01,442 [ scc.config] DEBUG Found submodule.omero-parade.branch
2025-09-21 00:41:01,444 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2025-09-21 00:41:01,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:41:01,861 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2025-09-21 00:41:01,863 [ scc.config] DEBUG Found submodule.omero-rois.url
2025-09-21 00:41:02,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:41:02,298 [ scc.config] DEBUG Found submodule.omero-signup.url
2025-09-21 00:41:02,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:41:02,700 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2025-09-21 00:41:03,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:41:03,099 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2025-09-21 00:41:03,101 [ scc.config] DEBUG Found submodule.omero-upload.url
2025-09-21 00:41:03,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:41:03,524 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2025-09-21 00:41:03,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:41:03,962 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2025-09-21 00:41:04,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:41:04,499 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2025-09-21 00:41:04,501 [ scc.config] DEBUG Found submodule.omero-weberror.url
2025-09-21 00:41:04,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:41:04,892 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2025-09-21 00:41:04,894 [ scc.config] DEBUG Found submodule.omero-webtest.url
2025-09-21 00:41:05,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:41:05,365 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2025-09-21 00:41:05,367 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2025-09-21 00:41:05,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:41:05,770 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2025-09-21 00:41:05,772 [ scc.config] DEBUG Found submodule.scripts.url
2025-09-21 00:41:06,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2025-09-21 00:41:06,153 [ scc.config] DEBUG Found submodule.scripts.branch
2025-09-21 00:41:06,153 [ scc.git] DEBUG Calling 'git status --porcelain'
2025-09-21 00:41:06,230 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fbcd4a44c10> has local changes
2025-09-21 00:41:06,230 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Already up to date.
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
- PR 69 dominikl 'Fix help text for impo/export commands'
- PR 71 dominikl 'Escape slash character in image names'
- PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 174 will-moore 'Skip wells' (stage: draft)
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..37ea700
Previously merged:
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 181 will-moore 'Add labels support for import'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
- PR 543 will-moore 'Plate well labels' (exclude comment)
Updating 9cc36cde..66607c99
Previously merged:
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 600 Rdornier 'Label on rois'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 612 will-moore 'Script version'
- PR 616 Rdornier 'Fix labels around border'
Conflicting PRs (not included):
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 637 Rdornier 'Fix scalebar position'
- PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..bb94cf8
Previously merged:
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
- PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
Already up to date.
Merged PRs:
- PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
- PR 76 will-moore 'Run cli deps'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..00e0207
Previously merged:
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Conflicting PRs (not included):
- PR 100 dominikl 'Run tests properly'
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
- PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
Updating 4b4c755..03b9116
Previously merged:
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 223 will-moore 'don't attempt ROI stats on big images'
Conflicting PRs (not included):
- PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
Generated by OMERO-plugins-push#538 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/538/)'
2025-09-21 00:41:06,240 [ scc.git] DEBUG [detached HEAD fe1e963] merge master -Dorg -Ssuccess-only
2025-09-21 00:41:06,240 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2025-09-21 00:41:06,240 [ scc.merge] INFO Repository: ome/omero-plugins
2025-09-21 00:41:06,240 [ scc.merge] INFO Already up to date.
2025-09-21 00:41:06,240 [ scc.merge] INFO
2025-09-21 00:41:06,240 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,240 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2025-09-21 00:41:06,240 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2025-09-21 00:41:06,240 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2025-09-21 00:41:06,240 [ scc.merge] INFO
2025-09-21 00:41:06,240 [ scc.merge] INFO Repository: ome/minimal-omero-client
2025-09-21 00:41:06,240 [ scc.merge] INFO Already up to date.
2025-09-21 00:41:06,240 [ scc.merge] INFO
2025-09-21 00:41:06,240 [ scc.merge] INFO
2025-09-21 00:41:06,240 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2025-09-21 00:41:06,240 [ scc.merge] INFO Excluded PRs:
2025-09-21 00:41:06,240 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2025-09-21 00:41:06,240 [ scc.merge] INFO Already up to date.
2025-09-21 00:41:06,240 [ scc.merge] INFO
2025-09-21 00:41:06,240 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,240 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:41:06,241 [ scc.merge] INFO
2025-09-21 00:41:06,241 [ scc.merge] INFO Repository: ome/omero-cli-render
2025-09-21 00:41:06,241 [ scc.merge] INFO Excluded PRs:
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft)
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2025-09-21 00:41:06,241 [ scc.merge] INFO Already up to date.
2025-09-21 00:41:06,241 [ scc.merge] INFO
2025-09-21 00:41:06,241 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:41:06,241 [ scc.merge] INFO
2025-09-21 00:41:06,241 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2025-09-21 00:41:06,241 [ scc.merge] INFO Excluded PRs:
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft)
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment)
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2025-09-21 00:41:06,241 [ scc.merge] INFO Updating 11d3587..37ea700
2025-09-21 00:41:06,241 [ scc.merge] INFO Previously merged:
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-21 00:41:06,241 [ scc.merge] INFO
2025-09-21 00:41:06,241 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2025-09-21 00:41:06,241 [ scc.merge] INFO
2025-09-21 00:41:06,241 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2025-09-21 00:41:06,241 [ scc.merge] INFO
2025-09-21 00:41:06,241 [ scc.merge] INFO Repository: ome/omero-figure
2025-09-21 00:41:06,241 [ scc.merge] INFO Excluded PRs:
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment)
2025-09-21 00:41:06,241 [ scc.merge] INFO Updating 9cc36cde..66607c99
2025-09-21 00:41:06,241 [ scc.merge] INFO Previously merged:
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2025-09-21 00:41:06,241 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-21 00:41:06,242 [ scc.merge] INFO
2025-09-21 00:41:06,242 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2025-09-21 00:41:06,242 [ scc.merge] INFO
2025-09-21 00:41:06,242 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6'
2025-09-21 00:41:06,242 [ scc.merge] INFO
2025-09-21 00:41:06,242 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2025-09-21 00:41:06,242 [ scc.merge] INFO Already up to date.
2025-09-21 00:41:06,242 [ scc.merge] INFO
2025-09-21 00:41:06,242 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:41:06,242 [ scc.merge] INFO
2025-09-21 00:41:06,242 [ scc.merge] INFO Repository: ome/omero-gallery
2025-09-21 00:41:06,242 [ scc.merge] INFO Already up to date.
2025-09-21 00:41:06,242 [ scc.merge] INFO
2025-09-21 00:41:06,242 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2025-09-21 00:41:06,242 [ scc.merge] INFO
2025-09-21 00:41:06,242 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2025-09-21 00:41:06,242 [ scc.merge] INFO
2025-09-21 00:41:06,242 [ scc.merge] INFO Repository: ome/omero-iviewer
2025-09-21 00:41:06,242 [ scc.merge] INFO Excluded PRs:
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft)
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2025-09-21 00:41:06,242 [ scc.merge] INFO Updating 7a798ce..bb94cf8
2025-09-21 00:41:06,242 [ scc.merge] INFO Previously merged:
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-21 00:41:06,242 [ scc.merge] INFO
2025-09-21 00:41:06,242 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2025-09-21 00:41:06,242 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2025-09-21 00:41:06,242 [ scc.merge] INFO
2025-09-21 00:41:06,242 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2025-09-21 00:41:06,243 [ scc.merge] INFO
2025-09-21 00:41:06,243 [ scc.merge] INFO Repository: ome/omero-mapr
2025-09-21 00:41:06,243 [ scc.merge] INFO Excluded PRs:
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2025-09-21 00:41:06,243 [ scc.merge] INFO Already up to date.
2025-09-21 00:41:06,243 [ scc.merge] INFO
2025-09-21 00:41:06,243 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-21 00:41:06,243 [ scc.merge] INFO
2025-09-21 00:41:06,243 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:41:06,243 [ scc.merge] INFO
2025-09-21 00:41:06,243 [ scc.merge] INFO Repository: ome/omero-metadata
2025-09-21 00:41:06,243 [ scc.merge] INFO Updating 3cd120c..55060a2
2025-09-21 00:41:06,243 [ scc.merge] INFO Previously merged:
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-21 00:41:06,243 [ scc.merge] INFO
2025-09-21 00:41:06,243 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2025-09-21 00:41:06,243 [ scc.merge] INFO
2025-09-21 00:41:06,243 [ scc.merge] INFO Repository: ome/omero-parade
2025-09-21 00:41:06,243 [ scc.merge] INFO Excluded PRs:
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2025-09-21 00:41:06,243 [ scc.merge] INFO Already up to date.
2025-09-21 00:41:06,243 [ scc.merge] INFO
2025-09-21 00:41:06,243 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2025-09-21 00:41:06,243 [ scc.merge] INFO
2025-09-21 00:41:06,243 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2025-09-21 00:41:06,243 [ scc.merge] INFO Already up to date.
2025-09-21 00:41:06,243 [ scc.merge] INFO
2025-09-21 00:41:06,243 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:41:06,243 [ scc.merge] INFO
2025-09-21 00:41:06,243 [ scc.merge] INFO Repository: ome/omero-rois
2025-09-21 00:41:06,243 [ scc.merge] INFO Excluded PRs:
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2025-09-21 00:41:06,243 [ scc.merge] INFO Already up to date.
2025-09-21 00:41:06,243 [ scc.merge] INFO
2025-09-21 00:41:06,243 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2025-09-21 00:41:06,243 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:41:06,243 [ scc.merge] INFO
2025-09-21 00:41:06,243 [ scc.merge] INFO Repository: ome/omero-signup
2025-09-21 00:41:06,243 [ scc.merge] INFO Already up to date.
2025-09-21 00:41:06,243 [ scc.merge] INFO
2025-09-21 00:41:06,244 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,244 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:41:06,244 [ scc.merge] INFO
2025-09-21 00:41:06,244 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-21 00:41:06,244 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2025-09-21 00:41:06,244 [ scc.merge] INFO
2025-09-21 00:41:06,244 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2025-09-21 00:41:06,244 [ scc.merge] INFO Excluded PRs:
2025-09-21 00:41:06,244 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2025-09-21 00:41:06,244 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2025-09-21 00:41:06,244 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles)
2025-09-21 00:41:06,244 [ scc.merge] INFO Already up to date.
2025-09-21 00:41:06,244 [ scc.merge] INFO
2025-09-21 00:41:06,244 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,244 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra'
2025-09-21 00:41:06,244 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps'
2025-09-21 00:41:06,244 [ scc.merge] INFO
2025-09-21 00:41:06,244 [ scc.merge] INFO Repository: ome/omero-upload
2025-09-21 00:41:06,244 [ scc.merge] INFO Already up to date.
2025-09-21 00:41:06,244 [ scc.merge] INFO
2025-09-21 00:41:06,244 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,244 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:41:06,244 [ scc.merge] INFO
2025-09-21 00:41:06,244 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2025-09-21 00:41:06,244 [ scc.merge] INFO Updating deab817..160d894
2025-09-21 00:41:06,244 [ scc.merge] INFO Previously merged:
2025-09-21 00:41:06,244 [ scc.merge] INFO - PR 20 jburel 'Build'
2025-09-21 00:41:06,244 [ scc.merge] INFO
2025-09-21 00:41:06,244 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,244 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:41:06,244 [ scc.merge] INFO
2025-09-21 00:41:06,244 [ scc.merge] INFO Repository: ome/omero-web-zarr
2025-09-21 00:41:06,244 [ scc.merge] INFO Excluded PRs:
2025-09-21 00:41:06,244 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2025-09-21 00:41:06,244 [ scc.merge] INFO Updating 8f3c313..00e0207
2025-09-21 00:41:06,244 [ scc.merge] INFO Previously merged:
2025-09-21 00:41:06,244 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2025-09-21 00:41:06,244 [ scc.merge] INFO
2025-09-21 00:41:06,244 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,244 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2025-09-21 00:41:06,244 [ scc.merge] INFO
2025-09-21 00:41:06,244 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-21 00:41:06,244 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2025-09-21 00:41:06,244 [ scc.merge] INFO
2025-09-21 00:41:06,244 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2025-09-21 00:41:06,244 [ scc.merge] INFO Already up to date.
2025-09-21 00:41:06,244 [ scc.merge] INFO
2025-09-21 00:41:06,244 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,244 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:41:06,244 [ scc.merge] INFO
2025-09-21 00:41:06,244 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2025-09-21 00:41:06,244 [ scc.merge] INFO Already up to date.
2025-09-21 00:41:06,244 [ scc.merge] INFO
2025-09-21 00:41:06,245 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,245 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2025-09-21 00:41:06,245 [ scc.merge] INFO
2025-09-21 00:41:06,245 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2025-09-21 00:41:06,245 [ scc.merge] INFO Already up to date.
2025-09-21 00:41:06,245 [ scc.merge] INFO
2025-09-21 00:41:06,245 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-21 00:41:06,245 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly'
2025-09-21 00:41:06,245 [ scc.merge] INFO
2025-09-21 00:41:06,245 [ scc.merge] INFO Repository: ome/scripts
2025-09-21 00:41:06,245 [ scc.merge] INFO Excluded PRs:
2025-09-21 00:41:06,245 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2025-09-21 00:41:06,245 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment)
2025-09-21 00:41:06,245 [ scc.merge] INFO Updating 4b4c755..03b9116
2025-09-21 00:41:06,245 [ scc.merge] INFO Previously merged:
2025-09-21 00:41:06,245 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2025-09-21 00:41:06,245 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2025-09-21 00:41:06,245 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2025-09-21 00:41:06,245 [ scc.merge] INFO
2025-09-21 00:41:06,245 [ scc.merge] INFO Merged PRs:
2025-09-21 00:41:06,245 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2025-09-21 00:41:06,245 [ scc.merge] INFO
2025-09-21 00:41:06,245 [ scc.merge] INFO Conflicting PRs (not included):
2025-09-21 00:41:06,245 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py'
2025-09-21 00:41:06,245 [ scc.merge] INFO
2025-09-21 00:41:06,245 [ scc.merge] DEBUG Cleaning remote branches created for merging
2025-09-21 00:41:06,245 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,247 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2025-09-21 00:41:06,247 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,249 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,249 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2025-09-21 00:41:06,249 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,251 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,251 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2025-09-21 00:41:06,251 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,253 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,253 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2025-09-21 00:41:06,253 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2025-09-21 00:41:06,255 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,257 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,257 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2025-09-21 00:41:06,257 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2025-09-21 00:41:06,259 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,261 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,261 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2025-09-21 00:41:06,261 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,263 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,263 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2025-09-21 00:41:06,263 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,265 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,265 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2025-09-21 00:41:06,265 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,267 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,267 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2025-09-21 00:41:06,267 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,269 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,269 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2025-09-21 00:41:06,269 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,271 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,271 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2025-09-21 00:41:06,271 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,273 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,273 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2025-09-21 00:41:06,273 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,275 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,275 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2025-09-21 00:41:06,275 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,277 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,277 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2025-09-21 00:41:06,277 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,279 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,279 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2025-09-21 00:41:06,279 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,281 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,281 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2025-09-21 00:41:06,281 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,283 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,283 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2025-09-21 00:41:06,283 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,285 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,285 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2025-09-21 00:41:06,285 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,287 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,287 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2025-09-21 00:41:06,287 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2025-09-21 00:41:06,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2025-09-21 00:41:06,289 [ scc.git] DEBUG Calling 'git remote'
2025-09-21 00:41:06,291 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
grep: build.gradle: No such file or directory
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Up-to-date:
Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 120ae1e] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 6c74f74] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2025-09-21 00:41:51,776 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2025-09-21 00:42:00,804 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2025-09-21 00:42:03,175 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-09-21 00:42:07,877 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2025-09-21 00:42:48,235 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
![[Jenkins]](/jenkins/static/9161e9ff/images/svgs/logo.svg){kind=logo}
