![[Jenkins]](/jenkins/static/daea91b1/images/svgs/logo.svg){kind=logo}
Started by upstream project "Trigger" build number 517 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-python-superbuild-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.39.2' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-python-superbuild-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.39.2' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision 155f8de84051621b91200b6b3617c057b622fad4 (refs/remotes/origin/master) Commit message: "Merge pull request #319 from ome/dependabot/submodules/omero-py-e485be4" > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-python-superbuild-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-python-superbuild.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-python-superbuild.git > git --version # timeout=10 > git --version # 'git version 2.43.5' > git fetch --tags --force --progress -- https://github.com/ome/omero-python-superbuild.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 155f8de84051621b91200b6b3617c057b622fad4 # timeout=10 > git rev-list --no-walk 155f8de84051621b91200b6b3617c057b622fad4 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-py.url # timeout=10 > git config -f .gitmodules --get submodule.omero-py.path # timeout=10 > git config --get submodule.omero-web.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web.path # timeout=10 > git config --get submodule.omero-marshal.url # timeout=10 > git config -f .gitmodules --get submodule.omero-marshal.path # timeout=10 > git config --get submodule.omero-dropbox.url # timeout=10 > git config -f .gitmodules --get submodule.omero-dropbox.path # timeout=10 > git config --get submodule.omero-scripts.url # timeout=10 > git config -f .gitmodules --get submodule.omero-scripts.path # timeout=10 > git submodule update --init --recursive omero-py # timeout=10 > git submodule update --init --recursive omero-web # timeout=10 > git submodule update --init --recursive omero-marshal # timeout=10 > git submodule update --init --recursive omero-dropbox # timeout=10 > git submodule update --init --recursive omero-scripts # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 460 [Pipeline] sh + pushd build ~/workspace/OMERO-python-superbuild-push/build ~/workspace/OMERO-python-superbuild-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-python-superbuild-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-python-superbuild-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-python-superbuild-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.1.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.1.1 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached PyGithub-2.6.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel.yaml-0.18.14-py3-none-any.whl.metadata (24 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.4-py3-none-any.whl.metadata (4.9 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.14.0-py3-none-any.whl.metadata (3.0 kB) Collecting Deprecated (from PyGithub>=1.54->scc) Using cached Deprecated-1.2.18-py2.py3-none-any.whl.metadata (5.7 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-45.0.4-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=1.14 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-1.17.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB) Collecting pycparser (from cffi>=1.14->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2025.4.26-py3-none-any.whl.metadata (2.5 kB) Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc) Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB) Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) Using cached ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.7 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached PyGithub-2.6.1-py3-none-any.whl (410 kB) Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB) Using cached cryptography-45.0.4-cp311-abi3-manylinux_2_34_x86_64.whl (4.5 MB) Using cached cffi-1.17.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (467 kB) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) Using cached requests-2.32.4-py3-none-any.whl (64 kB) Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB) Using cached idna-3.10-py3-none-any.whl (70 kB) Using cached certifi-2025.4.26-py3-none-any.whl (159 kB) Using cached typing_extensions-4.14.0-py3-none-any.whl (43 kB) Using cached Deprecated-1.2.18-py2.py3-none-any.whl (10.0 kB) Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (83 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-2.22-py3-none-any.whl (117 kB) Using cached ruamel.yaml-0.18.14-py3-none-any.whl (118 kB) Using cached ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (739 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc Successfully installed Deprecated-1.2.18 PyGithub-2.6.1 PyYAML-6.0.2 certifi-2025.4.26 cffi-1.17.1 charset_normalizer-3.4.2 cryptography-45.0.4 future-1.0.0 idna-3.10 pycparser-2.22 pyjwt-2.10.1 pynacl-1.5.0 requests-2.32.4 ruamel.yaml-0.18.14 ruamel.yaml.clib-0.2.12 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.14.0 urllib3-1.26.20 wrapt-1.17.2 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-python-superbuild.git + BASE_REPO=omero-python-superbuild.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-python-superbuild-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-python-superbuild-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2025-06-13 00:48:38,500 [ scc.config] DEBUG Found github.token 2025-06-13 00:48:38,502 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:38,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:48:38,946 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:39,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:48:39,369 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:39,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-06-13 00:48:39,527 [ scc.gh] DEBUG 4647 remaining from 5000 (Reset at 01:06 2025-06-13 00:48:39,531 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-06-13 00:48:39,536 [ scc.git] DEBUG Check current status 2025-06-13 00:48:39,536 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-06-13 00:48:39,542 [ scc.git] DEBUG 155f8de Merge pull request #319 from ome/dependabot/submodules/omero-py-e485be4 2025-06-13 00:48:39,543 [ scc.git] DEBUG Calling 'git submodule status' 2025-06-13 00:48:39,678 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5) 2025-06-13 00:48:39,685 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66) 2025-06-13 00:48:39,707 [ scc.git] DEBUG e485be49bf7cba61f34dd030161831d8d8b66285 omero-py (v5.20.0-8-ge485be49) 2025-06-13 00:48:39,715 [ scc.git] DEBUG 950b28b31e228ae7b317cbd159235faf4023e4dc omero-scripts (v5.9.0-6-g950b28b) 2025-06-13 00:48:39,722 [ scc.git] DEBUG 4b979f847a45a13ead11e7b39705ec1656376fbc omero-web (v5.29.0-1-g4b979f847) 2025-06-13 00:48:39,730 [ scc.config] DEBUG Found remote.origin.url 2025-06-13 00:48:39,778 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:40,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None 2025-06-13 00:48:40,286 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:40,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-06-13 00:48:40,771 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:40,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-06-13 00:48:41,202 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:41,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-06-13 00:48:41,646 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:41,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-06-13 00:48:41,828 [ scc.git] DEBUG Resetting... 2025-06-13 00:48:41,828 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-06-13 00:48:41,835 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-06-13 00:48:41,835 [ scc.git] DEBUG HEAD is now at 155f8de Merge pull request #319 from ome/dependabot/submodules/omero-py-e485be4 2025-06-13 00:48:41,994 [ scc.git] DEBUG Check current status 2025-06-13 00:48:41,994 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-06-13 00:48:42,000 [ scc.git] DEBUG 155f8de Merge pull request #319 from ome/dependabot/submodules/omero-py-e485be4 2025-06-13 00:48:42,001 [ scc.git] DEBUG Calling 'git submodule status' 2025-06-13 00:48:42,127 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5) 2025-06-13 00:48:42,132 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66) 2025-06-13 00:48:42,147 [ scc.git] DEBUG e485be49bf7cba61f34dd030161831d8d8b66285 omero-py (v5.20.0-8-ge485be49) 2025-06-13 00:48:42,156 [ scc.git] DEBUG 950b28b31e228ae7b317cbd159235faf4023e4dc omero-scripts (v5.9.0-6-g950b28b) 2025-06-13 00:48:42,162 [ scc.git] DEBUG 4b979f847a45a13ead11e7b39705ec1656376fbc omero-web (v5.29.0-1-g4b979f847) 2025-06-13 00:48:42,164 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-06-13 00:48:42,165 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-06-13 00:48:42,165 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-06-13 00:48:42,165 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-06-13 00:48:42,165 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-06-13 00:48:42,165 [ scc.repo] DEBUG ## PRs found: 2025-06-13 00:48:42,167 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:42,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 None 2025-06-13 00:48:42,677 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:42,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/issues/321 HTTP/1.1" 200 None 2025-06-13 00:48:42,921 [ scc.repo] DEBUG # ... Include label: dependencies 2025-06-13 00:48:42,921 [ scc.repo] DEBUG - PR 321 dependabot[bot] 'Bump omero-py from `e485be4` to `d2f8480`' 2025-06-13 00:48:43,172 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:43,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/issues/320 HTTP/1.1" 200 None 2025-06-13 00:48:43,434 [ scc.repo] DEBUG # ... Include label: dependencies 2025-06-13 00:48:43,434 [ scc.repo] DEBUG - PR 320 dependabot[bot] 'Bump omero-web from `4b979f8` to `c1b8fef`' 2025-06-13 00:48:43,434 [ scc.repo] DEBUG ## Branches found: 2025-06-13 00:48:43,434 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:48:43,434 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:48:43,437 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-06-13 00:48:43,440 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-06-13 00:48:43,441 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-06-13 00:48:43,444 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-06-13 00:48:43,448 [ scc.git] DEBUG Already up to date. 2025-06-13 00:48:43,448 [ scc.git] DEBUG Calling 'git fetch origin pull/320/head' 2025-06-13 00:48:43,762 [ scc.git] DEBUG From https://github.com/ome/omero-python-superbuild 2025-06-13 00:48:43,762 [ scc.git] DEBUG * branch refs/pull/320/head -> FETCH_HEAD 2025-06-13 00:48:43,770 [ scc.git] DEBUG Calling 'git fetch origin pull/321/head' 2025-06-13 00:48:44,053 [ scc.git] DEBUG From https://github.com/ome/omero-python-superbuild 2025-06-13 00:48:44,053 [ scc.git] DEBUG * branch refs/pull/321/head -> FETCH_HEAD 2025-06-13 00:48:44,065 [ scc.git] DEBUG ## Unique users: [] 2025-06-13 00:48:44,065 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:48:44,065 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:48:44,068 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a784439f1291b60e07536b5e1fccabf5d90baa1' 2025-06-13 00:48:44,075 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:48:44,081 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 320 (Bump omero-web from `4b979f8` to `c1b8fef`) 1a784439f1291b60e07536b5e1fccabf5d90baa1' 2025-06-13 00:48:44,097 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:48:44,105 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:44,107 [ scc.git] DEBUG omero-web | 2 +- 2025-06-13 00:48:44,107 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-06-13 00:48:44,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:48:44,298 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4f5878abfb25d73079eb6158b59e640fbbb28207' 2025-06-13 00:48:44,302 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:48:44,305 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 321 (Bump omero-py from `e485be4` to `d2f8480`) 4f5878abfb25d73079eb6158b59e640fbbb28207' 2025-06-13 00:48:44,319 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:48:44,326 [ scc.git] DEBUG omero-py | 2 +- 2025-06-13 00:48:44,326 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-06-13 00:48:44,549 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:44,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:48:44,729 [ scc.git] DEBUG Calling 'git submodule update' 2025-06-13 00:48:44,908 [ scc.git] DEBUG Submodule path 'omero-py': checked out 'd2f8480125bf0bda4e5663204366261a398266d2' 2025-06-13 00:48:44,948 [ scc.git] DEBUG Submodule path 'omero-web': checked out 'c1b8fefc872c1cadf5daba9476b405c59016abd5' 2025-06-13 00:48:44,949 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:48:44,949 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:48:44,952 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-06-13 00:48:45,009 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff35021f390> has no local changes 2025-06-13 00:48:45,009 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-python-superbuild Already up to date. Merged PRs: - PR 320 dependabot[bot] 'Bump omero-web from `4b979f8` to `c1b8fef`' - PR 321 dependabot[bot] 'Bump omero-py from `e485be4` to `d2f8480`' Generated by OMERO-python-superbuild-push#437 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/437/)' 2025-06-13 00:48:45,067 [ scc.git] DEBUG [detached HEAD e7c5c52] merge master -Dorg -Snone 2025-06-13 00:48:45,069 [ scc.merge] INFO Repository: ome/omero-python-superbuild 2025-06-13 00:48:45,069 [ scc.merge] INFO Already up to date. 2025-06-13 00:48:45,070 [ scc.merge] INFO 2025-06-13 00:48:45,070 [ scc.merge] INFO Merged PRs: 2025-06-13 00:48:45,070 [ scc.merge] INFO - PR 320 dependabot[bot] 'Bump omero-web from `4b979f8` to `c1b8fef`' 2025-06-13 00:48:45,070 [ scc.merge] INFO - PR 321 dependabot[bot] 'Bump omero-py from `e485be4` to `d2f8480`' 2025-06-13 00:48:45,070 [ scc.merge] INFO 2025-06-13 00:48:45,070 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-06-13 00:48:45,070 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'omero-dropbox' Synchronizing submodule url for 'omero-marshal' Synchronizing submodule url for 'omero-py' Synchronizing submodule url for 'omero-scripts' Synchronizing submodule url for 'omero-web' Merge all submodules using repository configuration: base-branch: master submodules: omero-scripts: base-branch: develop 2025-06-13 00:48:47,647 [ scc.config] DEBUG Found github.token 2025-06-13 00:48:47,649 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:47,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:48:48,087 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:48,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:48:48,511 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:48,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-06-13 00:48:48,678 [ scc.gh] DEBUG 4635 remaining from 5000 (Reset at 01:06 2025-06-13 00:48:48,682 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-06-13 00:48:48,687 [ scc.git] DEBUG Check current status 2025-06-13 00:48:48,687 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-06-13 00:48:48,690 [ scc.git] DEBUG e7c5c52 merge master -Dorg -Snone 2025-06-13 00:48:48,690 [ scc.git] DEBUG Calling 'git submodule status' 2025-06-13 00:48:48,830 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5) 2025-06-13 00:48:48,838 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66) 2025-06-13 00:48:48,858 [ scc.git] DEBUG d2f8480125bf0bda4e5663204366261a398266d2 omero-py (v5.20.0-16-gd2f84801) 2025-06-13 00:48:48,867 [ scc.git] DEBUG 950b28b31e228ae7b317cbd159235faf4023e4dc omero-scripts (v5.9.0-6-g950b28b) 2025-06-13 00:48:48,874 [ scc.git] DEBUG c1b8fefc872c1cadf5daba9476b405c59016abd5 omero-web (v5.29.0-5-gc1b8fefc8) 2025-06-13 00:48:48,883 [ scc.config] DEBUG Found remote.origin.url 2025-06-13 00:48:48,883 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2025-06-13 00:48:48,886 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-scripts: base-branch: develop 2025-06-13 00:48:48,930 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:49,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None 2025-06-13 00:48:49,453 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:49,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-06-13 00:48:49,942 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:50,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-06-13 00:48:50,369 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:50,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-06-13 00:48:50,796 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:50,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-06-13 00:48:50,981 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-06-13 00:48:51,147 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox 2025-06-13 00:48:51,148 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-06-13 00:48:51,152 [ scc.git] DEBUG Check current status 2025-06-13 00:48:51,152 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-06-13 00:48:51,159 [ scc.git] DEBUG Calling 'git submodule status' 2025-06-13 00:48:51,163 [ scc.git] DEBUG 01fa0c5 Merge pull request #24 from jburel/build 2025-06-13 00:48:51,288 [ scc.config] DEBUG Found remote.origin.url 2025-06-13 00:48:51,290 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:51,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox HTTP/1.1" 200 None 2025-06-13 00:48:51,782 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:52,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-06-13 00:48:52,255 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:52,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-06-13 00:48:52,682 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:52,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-06-13 00:48:53,122 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:53,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-06-13 00:48:53,311 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-06-13 00:48:53,446 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-06-13 00:48:53,453 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal 2025-06-13 00:48:53,453 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-06-13 00:48:53,458 [ scc.git] DEBUG Check current status 2025-06-13 00:48:53,458 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-06-13 00:48:53,461 [ scc.git] DEBUG 6d44f66 Merge pull request #82 from jburel/build 2025-06-13 00:48:53,465 [ scc.git] DEBUG Calling 'git submodule status' 2025-06-13 00:48:53,600 [ scc.config] DEBUG Found remote.origin.url 2025-06-13 00:48:53,602 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:53,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal HTTP/1.1" 200 None 2025-06-13 00:48:54,128 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:54,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-06-13 00:48:54,604 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:54,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-06-13 00:48:55,035 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:55,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-06-13 00:48:55,466 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:55,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-06-13 00:48:55,653 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-06-13 00:48:55,776 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-06-13 00:48:55,786 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py 2025-06-13 00:48:55,786 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-06-13 00:48:55,792 [ scc.git] DEBUG Check current status 2025-06-13 00:48:55,793 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-06-13 00:48:55,797 [ scc.git] DEBUG d2f84801 Merge pull request #453 from will-moore/externalInfo 2025-06-13 00:48:55,800 [ scc.git] DEBUG Calling 'git submodule status' 2025-06-13 00:48:55,902 [ scc.config] DEBUG Found remote.origin.url 2025-06-13 00:48:55,903 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:56,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py HTTP/1.1" 200 None 2025-06-13 00:48:56,423 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:56,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-06-13 00:48:56,917 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:57,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-06-13 00:48:57,366 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:57,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-06-13 00:48:57,798 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:57,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-06-13 00:48:57,968 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-06-13 00:48:58,083 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-06-13 00:48:58,090 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts 2025-06-13 00:48:58,090 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-06-13 00:48:58,098 [ scc.git] DEBUG Check current status 2025-06-13 00:48:58,098 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-06-13 00:48:58,105 [ scc.git] DEBUG 950b28b Merge pull request #225 from will-moore/test_fixes 2025-06-13 00:48:58,106 [ scc.git] DEBUG Calling 'git submodule status' 2025-06-13 00:48:58,247 [ scc.config] DEBUG Found remote.origin.url 2025-06-13 00:48:58,248 [ scc.git] DEBUG Repository configuration: base-branch: develop 2025-06-13 00:48:58,249 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:58,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts HTTP/1.1" 200 None 2025-06-13 00:48:58,794 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:59,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-06-13 00:48:59,267 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:59,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-06-13 00:48:59,706 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:48:59,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-06-13 00:49:00,155 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:00,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-06-13 00:49:00,356 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-06-13 00:49:00,493 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-06-13 00:49:00,501 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web 2025-06-13 00:49:00,501 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-06-13 00:49:00,506 [ scc.git] DEBUG Check current status 2025-06-13 00:49:00,506 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-06-13 00:49:00,513 [ scc.git] DEBUG c1b8fefc8 Merge pull request #606 from knabar/fix-large-channel-count 2025-06-13 00:49:00,514 [ scc.git] DEBUG Calling 'git submodule status' 2025-06-13 00:49:00,655 [ scc.config] DEBUG Found remote.origin.url 2025-06-13 00:49:00,657 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:00,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web HTTP/1.1" 200 None 2025-06-13 00:49:01,171 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:01,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-06-13 00:49:01,634 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:01,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-06-13 00:49:02,116 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:02,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-06-13 00:49:02,574 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:02,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-06-13 00:49:02,749 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-06-13 00:49:02,872 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-06-13 00:49:02,873 [ scc.git] DEBUG Resetting... 2025-06-13 00:49:02,873 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-06-13 00:49:02,882 [ scc.git] DEBUG HEAD is now at e7c5c52 merge master -Dorg -Snone 2025-06-13 00:49:02,885 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-06-13 00:49:03,025 [ scc.git] DEBUG Check current status 2025-06-13 00:49:03,025 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-06-13 00:49:03,029 [ scc.git] DEBUG e7c5c52 merge master -Dorg -Snone 2025-06-13 00:49:03,031 [ scc.git] DEBUG Calling 'git submodule status' 2025-06-13 00:49:03,170 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5) 2025-06-13 00:49:03,181 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66) 2025-06-13 00:49:03,198 [ scc.git] DEBUG d2f8480125bf0bda4e5663204366261a398266d2 omero-py (v5.20.0-16-gd2f84801) 2025-06-13 00:49:03,206 [ scc.git] DEBUG 950b28b31e228ae7b317cbd159235faf4023e4dc omero-scripts (v5.9.0-6-g950b28b) 2025-06-13 00:49:03,213 [ scc.git] DEBUG c1b8fefc872c1cadf5daba9476b405c59016abd5 omero-web (v5.29.0-5-gc1b8fefc8) 2025-06-13 00:49:03,218 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-06-13 00:49:03,219 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-06-13 00:49:03,219 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-06-13 00:49:03,219 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-06-13 00:49:03,219 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-06-13 00:49:03,219 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2025-06-13 00:49:03,219 [ scc.repo] DEBUG ## PRs found: 2025-06-13 00:49:03,221 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:03,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 None 2025-06-13 00:49:03,744 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:03,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/issues/321 HTTP/1.1" 200 None 2025-06-13 00:49:03,993 [ scc.repo] DEBUG # ... Include label: dependencies 2025-06-13 00:49:04,244 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:04,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/4f5878abfb25d73079eb6158b59e640fbbb28207 HTTP/1.1" 200 None 2025-06-13 00:49:04,844 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:05,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/4f5878abfb25d73079eb6158b59e640fbbb28207/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:49:05,344 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:05,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/4f5878abfb25d73079eb6158b59e640fbbb28207 HTTP/1.1" 200 None 2025-06-13 00:49:05,828 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:06,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/statuses/4f5878abfb25d73079eb6158b59e640fbbb28207?per_page=1 HTTP/1.1" 200 2 2025-06-13 00:49:06,029 [ scc.repo] DEBUG - PR 321 dependabot[bot] 'Bump omero-py from `e485be4` to `d2f8480`' 2025-06-13 00:49:06,281 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:06,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/issues/320 HTTP/1.1" 200 None 2025-06-13 00:49:06,563 [ scc.repo] DEBUG # ... Include label: dependencies 2025-06-13 00:49:06,814 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:07,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/1a784439f1291b60e07536b5e1fccabf5d90baa1 HTTP/1.1" 200 None 2025-06-13 00:49:07,428 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:07,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/1a784439f1291b60e07536b5e1fccabf5d90baa1/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:49:07,893 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:08,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/1a784439f1291b60e07536b5e1fccabf5d90baa1 HTTP/1.1" 200 None 2025-06-13 00:49:08,461 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:08,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/statuses/1a784439f1291b60e07536b5e1fccabf5d90baa1?per_page=1 HTTP/1.1" 200 2 2025-06-13 00:49:08,694 [ scc.repo] DEBUG - PR 320 dependabot[bot] 'Bump omero-web from `4b979f8` to `c1b8fef`' 2025-06-13 00:49:08,694 [ scc.repo] DEBUG ## Branches found: 2025-06-13 00:49:08,694 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:49:08,694 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:08,698 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-06-13 00:49:08,703 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-06-13 00:49:08,703 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-06-13 00:49:08,710 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-06-13 00:49:08,718 [ scc.git] DEBUG Already up to date. 2025-06-13 00:49:08,719 [ scc.git] DEBUG Calling 'git fetch origin pull/320/head' 2025-06-13 00:49:09,050 [ scc.git] DEBUG From https://github.com/ome/omero-python-superbuild 2025-06-13 00:49:09,051 [ scc.git] DEBUG * branch refs/pull/320/head -> FETCH_HEAD 2025-06-13 00:49:09,060 [ scc.git] DEBUG Calling 'git fetch origin pull/321/head' 2025-06-13 00:49:09,384 [ scc.git] DEBUG From https://github.com/ome/omero-python-superbuild 2025-06-13 00:49:09,384 [ scc.git] DEBUG * branch refs/pull/321/head -> FETCH_HEAD 2025-06-13 00:49:09,393 [ scc.git] DEBUG ## Unique users: [] 2025-06-13 00:49:09,393 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:49:09,393 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:09,396 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a784439f1291b60e07536b5e1fccabf5d90baa1' 2025-06-13 00:49:09,402 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:09,405 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 320 (Bump omero-web from `4b979f8` to `c1b8fef`) 1a784439f1291b60e07536b5e1fccabf5d90baa1' 2025-06-13 00:49:09,410 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:09,410 [ scc.git] DEBUG Already up to date. 2025-06-13 00:49:09,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:49:09,589 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4f5878abfb25d73079eb6158b59e640fbbb28207' 2025-06-13 00:49:09,593 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:09,596 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 321 (Bump omero-py from `e485be4` to `d2f8480`) 4f5878abfb25d73079eb6158b59e640fbbb28207' 2025-06-13 00:49:09,600 [ scc.git] DEBUG Already up to date. 2025-06-13 00:49:09,840 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:10,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:49:10,004 [ scc.git] DEBUG Calling 'git submodule update' 2025-06-13 00:49:10,135 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:49:10,136 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:10,144 [ scc.repo] DEBUG ## PRs found: 2025-06-13 00:49:10,255 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:10,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/pulls HTTP/1.1" 200 None 2025-06-13 00:49:10,797 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:11,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16 HTTP/1.1" 200 None 2025-06-13 00:49:11,297 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:11,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16/comments HTTP/1.1" 200 None 2025-06-13 00:49:11,807 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:12,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None 2025-06-13 00:49:12,404 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:12,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:49:12,883 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:13,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None 2025-06-13 00:49:13,355 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:13,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/statuses/f802993eba0b6514d0e31f0f7d5b996ffb54b452?per_page=1 HTTP/1.1" 200 2 2025-06-13 00:49:13,552 [ scc.repo] DEBUG - PR 16 joshmoore 'Review all instances of whitelist/blacklist' 2025-06-13 00:49:13,552 [ scc.repo] DEBUG ## Branches found: 2025-06-13 00:49:13,552 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox 2025-06-13 00:49:13,552 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:49:13,552 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:13,556 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-06-13 00:49:13,562 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-06-13 00:49:13,562 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-06-13 00:49:13,570 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-06-13 00:49:13,578 [ scc.git] DEBUG Already up to date. 2025-06-13 00:49:13,579 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2025-06-13 00:49:13,910 [ scc.git] DEBUG From https://github.com/ome/omero-dropbox 2025-06-13 00:49:13,910 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2025-06-13 00:49:13,916 [ scc.git] DEBUG ## Unique users: [] 2025-06-13 00:49:13,916 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:49:13,916 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:13,920 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f802993eba0b6514d0e31f0f7d5b996ffb54b452' 2025-06-13 00:49:13,924 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:13,929 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Review all instances of whitelist/blacklist) f802993eba0b6514d0e31f0f7d5b996ffb54b452' 2025-06-13 00:49:13,960 [ scc.git] DEBUG Auto-merging src/fsAbstractPlatformMonitor.py 2025-06-13 00:49:13,961 [ scc.git] DEBUG Auto-merging src/fsDirectory.py 2025-06-13 00:49:13,961 [ scc.git] DEBUG Auto-merging src/fsDropBox.py 2025-06-13 00:49:13,961 [ scc.git] DEBUG Auto-merging src/fsLists.py 2025-06-13 00:49:13,961 [ scc.git] DEBUG Auto-merging src/fsMac-10-5-Monitor.py 2025-06-13 00:49:13,961 [ scc.git] DEBUG Auto-merging src/fsMonitor.py 2025-06-13 00:49:13,961 [ scc.git] DEBUG Auto-merging src/fsMonitorServer.py 2025-06-13 00:49:13,961 [ scc.git] DEBUG Auto-merging src/fsPyinotifyMonitor.py 2025-06-13 00:49:13,961 [ scc.git] DEBUG Auto-merging src/fsWin-XP-Monitor.py 2025-06-13 00:49:13,993 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:49:14,001 [ scc.git] DEBUG src/fsAbstractPlatformMonitor.py | 6 +++--- 2025-06-13 00:49:14,001 [ scc.git] DEBUG src/fsDirectory.py | 46 ++++++++++++++++++++-------------------- 2025-06-13 00:49:14,001 [ scc.git] DEBUG src/fsDropBox.py | 24 ++++++++++----------- 2025-06-13 00:49:14,002 [ scc.git] DEBUG src/fsLists.py | 14 ++++++------ 2025-06-13 00:49:14,002 [ scc.git] DEBUG src/fsMac-10-5-Monitor.py | 10 ++++----- 2025-06-13 00:49:14,002 [ scc.git] DEBUG src/fsMonitor.py | 24 ++++++++++----------- 2025-06-13 00:49:14,002 [ scc.git] DEBUG src/fsMonitorServer.py | 10 ++++----- 2025-06-13 00:49:14,002 [ scc.git] DEBUG src/fsPyinotifyMonitor.py | 8 +++---- 2025-06-13 00:49:14,002 [ scc.git] DEBUG src/fsWin-XP-Monitor.py | 20 ++++++++--------- 2025-06-13 00:49:14,002 [ scc.git] DEBUG 9 files changed, 81 insertions(+), 81 deletions(-) 2025-06-13 00:49:14,007 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:14,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:49:14,178 [ scc.git] DEBUG Calling 'git submodule update' 2025-06-13 00:49:14,306 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:49:14,307 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:14,312 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-06-13 00:49:14,427 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-06-13 00:49:14,436 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f45d2d1b410> has no local changes 2025-06-13 00:49:14,436 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-dropbox Already up to date. Merged PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' Generated by OMERO-python-superbuild-push#437 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/437/)' 2025-06-13 00:49:14,449 [ scc.git] DEBUG [detached HEAD 85257df] merge master -Dorg -Ssuccess-only 2025-06-13 00:49:14,449 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-06-13 00:49:14,450 [ scc.repo] DEBUG ## PRs found: 2025-06-13 00:49:14,451 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:14,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/pulls HTTP/1.1" 200 None 2025-06-13 00:49:15,017 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:15,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/84 HTTP/1.1" 200 None 2025-06-13 00:49:15,491 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:15,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/84/comments HTTP/1.1" 200 None 2025-06-13 00:49:15,949 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:16,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69 HTTP/1.1" 200 None 2025-06-13 00:49:16,460 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:16,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69/comments HTTP/1.1" 200 None 2025-06-13 00:49:16,926 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:17,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None 2025-06-13 00:49:17,511 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:17,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:49:17,966 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:18,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None 2025-06-13 00:49:18,491 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:18,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/statuses/1cbe0bebb081ffedb835c966ecb434d33502ceca?per_page=1 HTTP/1.1" 200 2 2025-06-13 00:49:18,683 [ scc.repo] DEBUG - PR 69 will-moore 'Roi encoder allows Shape None' 2025-06-13 00:49:18,935 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:19,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34 HTTP/1.1" 200 None 2025-06-13 00:49:19,419 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:19,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34/comments HTTP/1.1" 200 None 2025-06-13 00:49:19,912 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:20,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33 HTTP/1.1" 200 None 2025-06-13 00:49:20,413 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:20,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33/comments HTTP/1.1" 200 None 2025-06-13 00:49:20,627 [ scc.repo] DEBUG ## Branches found: 2025-06-13 00:49:20,627 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal 2025-06-13 00:49:20,627 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:49:20,627 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:20,631 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-06-13 00:49:20,634 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-06-13 00:49:20,634 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-06-13 00:49:20,638 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-06-13 00:49:20,647 [ scc.git] DEBUG Already up to date. 2025-06-13 00:49:20,648 [ scc.git] DEBUG Calling 'git fetch origin pull/69/head' 2025-06-13 00:49:20,954 [ scc.git] DEBUG From https://github.com/ome/omero-marshal 2025-06-13 00:49:20,954 [ scc.git] DEBUG * branch refs/pull/69/head -> FETCH_HEAD 2025-06-13 00:49:20,961 [ scc.git] DEBUG ## Unique users: [] 2025-06-13 00:49:20,961 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:49:20,961 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:20,968 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1cbe0bebb081ffedb835c966ecb434d33502ceca' 2025-06-13 00:49:20,976 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:20,986 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 69 (Roi encoder allows Shape None) 1cbe0bebb081ffedb835c966ecb434d33502ceca' 2025-06-13 00:49:21,003 [ scc.git] DEBUG Auto-merging tests/unit/conftest.py 2025-06-13 00:49:21,005 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:49:21,014 [ scc.git] DEBUG omero_marshal/encode/encoders/roi.py | 5 +++-- 2025-06-13 00:49:21,014 [ scc.git] DEBUG tests/unit/conftest.py | 5 ++++- 2025-06-13 00:49:21,014 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 3 deletions(-) 2025-06-13 00:49:21,017 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:21,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:49:21,180 [ scc.git] DEBUG Calling 'git submodule update' 2025-06-13 00:49:21,311 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:49:21,311 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:21,317 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-06-13 00:49:21,442 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-06-13 00:49:21,451 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f45d2d19110> has no local changes 2025-06-13 00:49:21,452 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-marshal Excluded PRs: - PR 84 joshmoore 'New JSON-LD context-based version' (stage: draft) - PR 34 chris-allan 'Initial support for Event' (exclude comment) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) Already up to date. Merged PRs: - PR 69 will-moore 'Roi encoder allows Shape None' Generated by OMERO-python-superbuild-push#437 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/437/)' 2025-06-13 00:49:21,467 [ scc.git] DEBUG [detached HEAD d8fb1cc] merge master -Dorg -Ssuccess-only 2025-06-13 00:49:21,468 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-06-13 00:49:21,468 [ scc.repo] DEBUG ## PRs found: 2025-06-13 00:49:21,469 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:21,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/pulls HTTP/1.1" 200 None 2025-06-13 00:49:22,083 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:22,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/461 HTTP/1.1" 200 None 2025-06-13 00:49:22,562 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:22,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/461/comments HTTP/1.1" 200 None 2025-06-13 00:49:23,062 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:23,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c72991de29649eb71f1acad7313ea0437d4897c2 HTTP/1.1" 200 None 2025-06-13 00:49:23,599 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:23,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c72991de29649eb71f1acad7313ea0437d4897c2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:49:24,091 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:24,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c72991de29649eb71f1acad7313ea0437d4897c2/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:49:24,594 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:24,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c72991de29649eb71f1acad7313ea0437d4897c2 HTTP/1.1" 200 None 2025-06-13 00:49:25,051 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:25,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/c72991de29649eb71f1acad7313ea0437d4897c2?per_page=1 HTTP/1.1" 200 None 2025-06-13 00:49:25,511 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:25,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c72991de29649eb71f1acad7313ea0437d4897c2 HTTP/1.1" 200 None 2025-06-13 00:49:25,959 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:26,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c72991de29649eb71f1acad7313ea0437d4897c2/status HTTP/1.1" 200 None 2025-06-13 00:49:26,151 [ scc.repo] DEBUG - PR 461 jburel 'Replace to/fromstring by to/frombytes' 2025-06-13 00:49:26,402 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:26,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/460 HTTP/1.1" 200 None 2025-06-13 00:49:26,864 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:27,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/460/comments HTTP/1.1" 200 None 2025-06-13 00:49:27,390 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:27,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2c0e9f319dd87422afd281e0734c304636a4a27 HTTP/1.1" 200 None 2025-06-13 00:49:27,904 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:28,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2c0e9f319dd87422afd281e0734c304636a4a27/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:49:28,375 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:28,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2c0e9f319dd87422afd281e0734c304636a4a27/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:49:28,893 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:29,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2c0e9f319dd87422afd281e0734c304636a4a27 HTTP/1.1" 200 None 2025-06-13 00:49:29,400 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:29,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/c2c0e9f319dd87422afd281e0734c304636a4a27?per_page=1 HTTP/1.1" 200 None 2025-06-13 00:49:29,851 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:30,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2c0e9f319dd87422afd281e0734c304636a4a27 HTTP/1.1" 200 None 2025-06-13 00:49:30,309 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:30,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2c0e9f319dd87422afd281e0734c304636a4a27/status HTTP/1.1" 200 None 2025-06-13 00:49:30,511 [ scc.repo] DEBUG - PR 460 sbesson 'omero.testlib: rename test_dir utility as create_managed_dir' 2025-06-13 00:49:30,762 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:30,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/459 HTTP/1.1" 200 None 2025-06-13 00:49:31,231 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:31,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/450 HTTP/1.1" 200 None 2025-06-13 00:49:31,723 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:32,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/450/comments HTTP/1.1" 200 None 2025-06-13 00:49:32,307 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:32,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/443 HTTP/1.1" 200 None 2025-06-13 00:49:32,783 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:33,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/443/comments HTTP/1.1" 200 None 2025-06-13 00:49:33,045 [ scc.repo] DEBUG # ... Exclude label: exclude 2025-06-13 00:49:33,296 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:33,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/408 HTTP/1.1" 200 None 2025-06-13 00:49:33,775 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:33,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/408/comments HTTP/1.1" 200 None 2025-06-13 00:49:34,242 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:34,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None 2025-06-13 00:49:34,783 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:35,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:49:35,313 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:35,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:49:35,850 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:36,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None 2025-06-13 00:49:36,359 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:36,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/5b69af339bf34bd4adcf16a7f6a03fafa2921804?per_page=1 HTTP/1.1" 200 None 2025-06-13 00:49:36,810 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:37,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None 2025-06-13 00:49:37,261 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:37,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/status HTTP/1.1" 200 None 2025-06-13 00:49:37,446 [ scc.repo] DEBUG - PR 408 jburel 'remove deprecated method' 2025-06-13 00:49:37,696 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:37,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/396 HTTP/1.1" 200 None 2025-06-13 00:49:38,201 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:38,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/396/comments HTTP/1.1" 200 None 2025-06-13 00:49:38,703 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:38,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573 HTTP/1.1" 200 None 2025-06-13 00:49:39,207 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:39,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:49:39,706 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:39,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:49:40,204 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:40,435 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/391 HTTP/1.1" 200 None 2025-06-13 00:49:40,687 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:40,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/391/comments HTTP/1.1" 200 None 2025-06-13 00:49:41,162 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:41,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None 2025-06-13 00:49:41,688 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:41,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:49:42,173 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:42,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None 2025-06-13 00:49:42,639 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:42,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/20da2ca68fa40df47b5436887597e9804098f023?per_page=1 HTTP/1.1" 200 2 2025-06-13 00:49:42,830 [ scc.repo] DEBUG - PR 391 joshmoore 'Add jstack command' 2025-06-13 00:49:43,081 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:43,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332 HTTP/1.1" 200 None 2025-06-13 00:49:43,600 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:43,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332/comments HTTP/1.1" 200 None 2025-06-13 00:49:44,093 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:44,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None 2025-06-13 00:49:44,613 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:44,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:49:45,081 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:45,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None 2025-06-13 00:49:45,610 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:45,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/c427fcd99373ad6c0c2d28d322827d0523ba7afc?per_page=1 HTTP/1.1" 200 2 2025-06-13 00:49:45,860 [ scc.repo] DEBUG - PR 332 jburel 'Build conda' 2025-06-13 00:49:46,111 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:46,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299 HTTP/1.1" 200 None 2025-06-13 00:49:46,580 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:46,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299/comments HTTP/1.1" 200 None 2025-06-13 00:49:47,075 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:47,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199 HTTP/1.1" 200 None 2025-06-13 00:49:47,555 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:47,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199/comments HTTP/1.1" 200 None 2025-06-13 00:49:48,075 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:48,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None 2025-06-13 00:49:48,602 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:48,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:49:49,070 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:49,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None 2025-06-13 00:49:49,634 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:49,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/d9df94bbff36ef1f943c9ab1995cd60831e572ec?per_page=1 HTTP/1.1" 200 2 2025-06-13 00:49:49,821 [ scc.repo] DEBUG - PR 199 joshmoore 'user: allow setting default group' 2025-06-13 00:49:49,822 [ scc.repo] DEBUG ## Branches found: 2025-06-13 00:49:49,822 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py 2025-06-13 00:49:49,822 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:49:49,823 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:49,826 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-06-13 00:49:49,834 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-06-13 00:49:49,834 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-06-13 00:49:49,842 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-06-13 00:49:49,850 [ scc.git] DEBUG Already up to date. 2025-06-13 00:49:49,851 [ scc.git] DEBUG Calling 'git fetch origin pull/199/head' 2025-06-13 00:49:50,213 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-06-13 00:49:50,213 [ scc.git] DEBUG * branch refs/pull/199/head -> FETCH_HEAD 2025-06-13 00:49:50,220 [ scc.git] DEBUG Calling 'git fetch origin pull/332/head' 2025-06-13 00:49:50,535 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-06-13 00:49:50,535 [ scc.git] DEBUG * branch refs/pull/332/head -> FETCH_HEAD 2025-06-13 00:49:50,547 [ scc.git] DEBUG Calling 'git fetch origin pull/391/head' 2025-06-13 00:49:50,856 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-06-13 00:49:50,857 [ scc.git] DEBUG * branch refs/pull/391/head -> FETCH_HEAD 2025-06-13 00:49:50,866 [ scc.git] DEBUG Calling 'git fetch origin pull/408/head' 2025-06-13 00:49:51,155 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-06-13 00:49:51,155 [ scc.git] DEBUG * branch refs/pull/408/head -> FETCH_HEAD 2025-06-13 00:49:51,161 [ scc.git] DEBUG Calling 'git fetch origin pull/460/head' 2025-06-13 00:49:51,452 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-06-13 00:49:51,452 [ scc.git] DEBUG * branch refs/pull/460/head -> FETCH_HEAD 2025-06-13 00:49:51,458 [ scc.git] DEBUG Calling 'git fetch origin pull/461/head' 2025-06-13 00:49:51,920 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-06-13 00:49:51,921 [ scc.git] DEBUG * branch refs/pull/461/head -> FETCH_HEAD 2025-06-13 00:49:51,925 [ scc.git] DEBUG ## Unique users: [] 2025-06-13 00:49:51,926 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:49:51,926 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:51,935 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d9df94bbff36ef1f943c9ab1995cd60831e572ec' 2025-06-13 00:49:51,953 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:51,957 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 199 (user: allow setting default group) d9df94bbff36ef1f943c9ab1995cd60831e572ec' 2025-06-13 00:49:51,994 [ scc.git] DEBUG Auto-merging src/omero/cli.py 2025-06-13 00:49:51,994 [ scc.git] DEBUG Auto-merging src/omero/plugins/user.py 2025-06-13 00:49:51,996 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:49:52,005 [ scc.git] DEBUG src/omero/cli.py | 6 ++++++ 2025-06-13 00:49:52,005 [ scc.git] DEBUG src/omero/plugins/user.py | 36 +++++++++++++++++++++++++++++++++--- 2025-06-13 00:49:52,005 [ scc.git] DEBUG 2 files changed, 39 insertions(+), 3 deletions(-) 2025-06-13 00:49:52,008 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:52,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:49:52,172 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c427fcd99373ad6c0c2d28d322827d0523ba7afc' 2025-06-13 00:49:52,193 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:52,197 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 332 (Build conda) c427fcd99373ad6c0c2d28d322827d0523ba7afc' 2025-06-13 00:49:52,225 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:49:52,229 [ scc.git] DEBUG .github/workflows/install.yml | 37 +++++++++++++++++++++++++++++++++++++ 2025-06-13 00:49:52,229 [ scc.git] DEBUG connect.py | 11 +++++++++++ 2025-06-13 00:49:52,229 [ scc.git] DEBUG 2 files changed, 48 insertions(+) 2025-06-13 00:49:52,229 [ scc.git] DEBUG create mode 100644 .github/workflows/install.yml 2025-06-13 00:49:52,229 [ scc.git] DEBUG create mode 100644 connect.py 2025-06-13 00:49:52,424 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:52,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:49:52,591 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...20da2ca68fa40df47b5436887597e9804098f023' 2025-06-13 00:49:52,609 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:52,614 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 391 (Add jstack command) 20da2ca68fa40df47b5436887597e9804098f023' 2025-06-13 00:49:52,652 [ scc.git] DEBUG Auto-merging src/omero/plugins/admin.py 2025-06-13 00:49:52,654 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:49:52,661 [ scc.git] DEBUG src/omero/plugins/admin.py | 61 ++++++++++++++++++++++++++++++++++++++++++++-- 2025-06-13 00:49:52,661 [ scc.git] DEBUG 1 file changed, 59 insertions(+), 2 deletions(-) 2025-06-13 00:49:52,842 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:53,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:49:53,031 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5b69af339bf34bd4adcf16a7f6a03fafa2921804' 2025-06-13 00:49:53,053 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:53,057 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 408 (remove deprecated method) 5b69af339bf34bd4adcf16a7f6a03fafa2921804' 2025-06-13 00:49:53,112 [ scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py 2025-06-13 00:49:53,114 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:49:53,125 [ scc.git] DEBUG src/omero/gateway/__init__.py | 36 ------------------------------------ 2025-06-13 00:49:53,125 [ scc.git] DEBUG 1 file changed, 36 deletions(-) 2025-06-13 00:49:53,282 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:53,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:49:53,454 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c2c0e9f319dd87422afd281e0734c304636a4a27' 2025-06-13 00:49:53,476 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:53,479 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 460 (omero.testlib: rename test_dir utility as create_managed_dir) c2c0e9f319dd87422afd281e0734c304636a4a27' 2025-06-13 00:49:53,518 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:49:53,525 [ scc.git] DEBUG src/omero/testlib/__init__.py | 4 ++-- 2025-06-13 00:49:53,525 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 2 deletions(-) 2025-06-13 00:49:53,705 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:53,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:49:53,892 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c72991de29649eb71f1acad7313ea0437d4897c2' 2025-06-13 00:49:53,910 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:53,913 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 461 (Replace to/fromstring by to/frombytes) c72991de29649eb71f1acad7313ea0437d4897c2' 2025-06-13 00:49:53,977 [ scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py 2025-06-13 00:49:53,980 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:49:53,997 [ scc.git] DEBUG src/omero/columns.py | 2 +- 2025-06-13 00:49:53,997 [ scc.git] DEBUG src/omero/gateway/__init__.py | 2 +- 2025-06-13 00:49:53,997 [ scc.git] DEBUG src/omero/util/script_utils.py | 8 ++++---- 2025-06-13 00:49:53,997 [ scc.git] DEBUG 3 files changed, 6 insertions(+), 6 deletions(-) 2025-06-13 00:49:54,144 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:54,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:49:54,318 [ scc.git] DEBUG Calling 'git submodule update' 2025-06-13 00:49:54,439 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:49:54,440 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:49:54,444 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-06-13 00:49:54,516 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-06-13 00:49:54,527 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f45d2e4ca10> has no local changes 2025-06-13 00:49:54,528 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-py Excluded PRs: - PR 459 Tom-TBT 'Wrapper improvements for ROIs' (stage: draft) - PR 450 multimeric 'Add model stubs' (user: multimeric) - PR 443 sbesson 'Gateway tests: remove logic downloading public DV files for testing' (label: exclude) - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure) - PR 299 joshmoore 'Add parents and children to omero obj' (exclude comment) Already up to date. Merged PRs: - PR 199 joshmoore 'user: allow setting default group' - PR 332 jburel 'Build conda' - PR 391 joshmoore 'Add jstack command' - PR 408 jburel 'remove deprecated method' - PR 460 sbesson 'omero.testlib: rename test_dir utility as create_managed_dir' - PR 461 jburel 'Replace to/fromstring by to/frombytes' Generated by OMERO-python-superbuild-push#437 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/437/)' 2025-06-13 00:49:54,538 [ scc.git] DEBUG [detached HEAD d9e87558] merge master -Dorg -Ssuccess-only 2025-06-13 00:49:54,538 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-06-13 00:49:54,538 [ scc.git] INFO Overriding base-branch from master to develop 2025-06-13 00:49:54,539 [ scc.repo] DEBUG ## PRs found: 2025-06-13 00:49:54,569 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:54,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2025-06-13 00:49:55,178 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:55,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/227 HTTP/1.1" 200 None 2025-06-13 00:49:55,648 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:55,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1f29df2ee64c201958e73f0d5a38c4c4a325bf65 HTTP/1.1" 200 None 2025-06-13 00:49:56,188 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:56,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1f29df2ee64c201958e73f0d5a38c4c4a325bf65/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:49:56,684 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:56,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1f29df2ee64c201958e73f0d5a38c4c4a325bf65/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:49:57,180 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:57,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1f29df2ee64c201958e73f0d5a38c4c4a325bf65 HTTP/1.1" 200 None 2025-06-13 00:49:57,624 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:57,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1f29df2ee64c201958e73f0d5a38c4c4a325bf65?per_page=1 HTTP/1.1" 200 2 2025-06-13 00:49:57,809 [ scc.repo] DEBUG - PR 227 jburel 'Replace tostring by tobytes' 2025-06-13 00:49:58,060 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:58,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None 2025-06-13 00:49:58,527 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:58,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None 2025-06-13 00:49:59,002 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:59,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None 2025-06-13 00:49:59,508 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:49:59,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:00,043 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:00,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:50:00,555 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:00,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None 2025-06-13 00:50:01,073 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:01,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2 2025-06-13 00:50:01,252 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images' 2025-06-13 00:50:01,503 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:01,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None 2025-06-13 00:50:01,986 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:02,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None 2025-06-13 00:50:02,482 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:02,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2025-06-13 00:50:03,014 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:03,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:03,512 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:03,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2025-06-13 00:50:04,072 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:04,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2 2025-06-13 00:50:04,255 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2025-06-13 00:50:04,507 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:04,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None 2025-06-13 00:50:05,030 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:05,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None 2025-06-13 00:50:05,576 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:05,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None 2025-06-13 00:50:06,052 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:06,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None 2025-06-13 00:50:06,286 [ scc.repo] DEBUG ## Branches found: 2025-06-13 00:50:06,286 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts 2025-06-13 00:50:06,286 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:50:06,286 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:50:06,290 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2025-06-13 00:50:06,297 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-06-13 00:50:06,297 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2025-06-13 00:50:06,303 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2025-06-13 00:50:06,308 [ scc.git] DEBUG Already up to date. 2025-06-13 00:50:06,309 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head' 2025-06-13 00:50:06,692 [ scc.git] DEBUG From https://github.com/ome/omero-scripts 2025-06-13 00:50:06,692 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD 2025-06-13 00:50:06,702 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head' 2025-06-13 00:50:07,024 [ scc.git] DEBUG From https://github.com/ome/omero-scripts 2025-06-13 00:50:07,025 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD 2025-06-13 00:50:07,030 [ scc.git] DEBUG Calling 'git fetch origin pull/227/head' 2025-06-13 00:50:07,325 [ scc.git] DEBUG From https://github.com/ome/omero-scripts 2025-06-13 00:50:07,325 [ scc.git] DEBUG * branch refs/pull/227/head -> FETCH_HEAD 2025-06-13 00:50:07,334 [ scc.git] DEBUG ## Unique users: [] 2025-06-13 00:50:07,335 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:50:07,335 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:50:07,341 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-06-13 00:50:07,349 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:50:07,354 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-06-13 00:50:07,371 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree. 2025-06-13 00:50:07,372 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-06-13 00:50:07,375 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-06-13 00:50:07,379 [ scc.git] DEBUG Calling 'git reset --hard 950b28b31e228ae7b317cbd159235faf4023e4dc' 2025-06-13 00:50:07,389 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:07,390 [ scc.git] DEBUG HEAD is now at 950b28b Merge pull request #225 from will-moore/test_fixes 2025-06-13 00:50:07,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:50:07,556 [ scc.git] DEBUG Calling 'git merge-base 950b28b31e228ae7b317cbd159235faf4023e4dc 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-06-13 00:50:07,564 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..950b28b31e228ae7b317cbd159235faf4023e4dc' 2025-06-13 00:50:07,569 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Conflicting PR. Removed from build [OMERO-python-superbuild-push#437](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/437/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/437/consoleText) for more details. Possible conflicts: - Upstream changes - omero/annotation_scripts/KeyVal_to_csv.py --conflicts 2025-06-13 00:50:07,575 [ scc.config] DEBUG Found github.token 2025-06-13 00:50:07,576 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts. 2025-06-13 00:50:07,576 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8' 2025-06-13 00:50:07,585 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:50:07,589 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8' 2025-06-13 00:50:07,631 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:50:07,637 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++- 2025-06-13 00:50:07,638 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-) 2025-06-13 00:50:07,807 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:08,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:50:08,149 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1f29df2ee64c201958e73f0d5a38c4c4a325bf65' 2025-06-13 00:50:08,154 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:50:08,161 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 227 (Replace tostring by tobytes) 1f29df2ee64c201958e73f0d5a38c4c4a325bf65' 2025-06-13 00:50:08,175 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:50:08,179 [ scc.git] DEBUG omero/export_scripts/Make_Movie.py | 2 +- 2025-06-13 00:50:08,179 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-06-13 00:50:08,400 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:08,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:50:08,572 [ scc.git] DEBUG Calling 'git submodule update' 2025-06-13 00:50:08,709 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:50:08,709 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:50:08,715 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-06-13 00:50:08,860 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-06-13 00:50:08,869 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f45d2ddc090> has no local changes 2025-06-13 00:50:08,869 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Already up to date. Merged PRs: - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 227 jburel 'Replace tostring by tobytes' Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Generated by OMERO-python-superbuild-push#437 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/437/)' 2025-06-13 00:50:08,878 [ scc.git] DEBUG [detached HEAD ca2c316] merge master -Dorg -Ssuccess-only 2025-06-13 00:50:08,879 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-06-13 00:50:08,879 [ scc.repo] DEBUG ## PRs found: 2025-06-13 00:50:08,881 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:09,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/pulls HTTP/1.1" 200 None 2025-06-13 00:50:09,570 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:09,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/623 HTTP/1.1" 200 None 2025-06-13 00:50:10,042 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:10,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/0343a1acda423eef3ca919c785761c5963a0b353 HTTP/1.1" 200 None 2025-06-13 00:50:10,594 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:10,849 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/0343a1acda423eef3ca919c785761c5963a0b353/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:11,101 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:11,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/0343a1acda423eef3ca919c785761c5963a0b353/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:50:11,622 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:11,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/0343a1acda423eef3ca919c785761c5963a0b353 HTTP/1.1" 200 None 2025-06-13 00:50:12,099 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:12,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/0343a1acda423eef3ca919c785761c5963a0b353?per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:12,546 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:12,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/0343a1acda423eef3ca919c785761c5963a0b353 HTTP/1.1" 200 None 2025-06-13 00:50:13,058 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:13,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/0343a1acda423eef3ca919c785761c5963a0b353/status HTTP/1.1" 200 None 2025-06-13 00:50:13,272 [ scc.repo] DEBUG - PR 623 jburel 'Replace fromstring by frombytes' 2025-06-13 00:50:13,523 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:13,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/621 HTTP/1.1" 200 None 2025-06-13 00:50:14,000 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:14,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/1f6b7dc5e59341f99678864923ba89565ce27956 HTTP/1.1" 200 None 2025-06-13 00:50:14,546 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:14,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/1f6b7dc5e59341f99678864923ba89565ce27956/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:15,070 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:15,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/1f6b7dc5e59341f99678864923ba89565ce27956/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:50:15,551 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:15,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/1f6b7dc5e59341f99678864923ba89565ce27956 HTTP/1.1" 200 None 2025-06-13 00:50:16,075 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:16,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/1f6b7dc5e59341f99678864923ba89565ce27956?per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:16,515 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:16,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/1f6b7dc5e59341f99678864923ba89565ce27956 HTTP/1.1" 200 None 2025-06-13 00:50:16,985 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:17,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/1f6b7dc5e59341f99678864923ba89565ce27956/status HTTP/1.1" 200 None 2025-06-13 00:50:17,208 [ scc.repo] DEBUG - PR 621 sbesson '/webgateway/original_file_paths: handle images without Fileset' 2025-06-13 00:50:17,459 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:17,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/619 HTTP/1.1" 200 None 2025-06-13 00:50:17,952 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:18,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac HTTP/1.1" 200 None 2025-06-13 00:50:18,552 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:18,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:19,093 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:19,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:50:19,652 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:19,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac HTTP/1.1" 200 None 2025-06-13 00:50:20,199 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:20,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/6dbfcebfee72e20f36a434fdc8850930d89acdac?per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:20,655 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:20,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac HTTP/1.1" 200 None 2025-06-13 00:50:21,229 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:21,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac/status HTTP/1.1" 200 None 2025-06-13 00:50:21,445 [ scc.repo] DEBUG - PR 619 DavidStirling 'Permit subpackages as app plugins' 2025-06-13 00:50:21,695 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:21,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/617 HTTP/1.1" 200 None 2025-06-13 00:50:22,184 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:22,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/616 HTTP/1.1" 200 None 2025-06-13 00:50:22,685 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:22,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/c6401a8d78f907d300ef6a6bb673efa86374ecc4 HTTP/1.1" 200 None 2025-06-13 00:50:23,203 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:23,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/c6401a8d78f907d300ef6a6bb673efa86374ecc4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:23,710 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:23,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/c6401a8d78f907d300ef6a6bb673efa86374ecc4/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:50:24,198 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:24,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/c6401a8d78f907d300ef6a6bb673efa86374ecc4 HTTP/1.1" 200 None 2025-06-13 00:50:24,717 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:24,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/c6401a8d78f907d300ef6a6bb673efa86374ecc4?per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:25,180 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:25,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/c6401a8d78f907d300ef6a6bb673efa86374ecc4 HTTP/1.1" 200 None 2025-06-13 00:50:25,630 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:25,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/c6401a8d78f907d300ef6a6bb673efa86374ecc4/status HTTP/1.1" 200 None 2025-06-13 00:50:25,825 [ scc.repo] DEBUG - PR 616 sbesson 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-06-13 00:50:26,077 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:26,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/614 HTTP/1.1" 200 None 2025-06-13 00:50:26,608 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:26,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/614/comments HTTP/1.1" 200 None 2025-06-13 00:50:27,076 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:27,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/da14d11b161eb8aa90a6e4729758ea504d5914e3 HTTP/1.1" 200 None 2025-06-13 00:50:27,583 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:27,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/da14d11b161eb8aa90a6e4729758ea504d5914e3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:28,082 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:28,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/da14d11b161eb8aa90a6e4729758ea504d5914e3/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:50:28,584 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:28,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/da14d11b161eb8aa90a6e4729758ea504d5914e3 HTTP/1.1" 200 None 2025-06-13 00:50:29,102 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:29,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/da14d11b161eb8aa90a6e4729758ea504d5914e3?per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:29,547 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:29,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/da14d11b161eb8aa90a6e4729758ea504d5914e3 HTTP/1.1" 200 None 2025-06-13 00:50:30,006 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:30,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/da14d11b161eb8aa90a6e4729758ea504d5914e3/status HTTP/1.1" 200 None 2025-06-13 00:50:30,209 [ scc.repo] DEBUG - PR 614 sbesson 'CodeQL workflow updates' 2025-06-13 00:50:30,460 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:30,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/613 HTTP/1.1" 200 None 2025-06-13 00:50:30,949 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:31,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/613/comments HTTP/1.1" 200 None 2025-06-13 00:50:31,446 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:31,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/cca34cb278cac5fb8088df75cc4fe5f315810342 HTTP/1.1" 200 None 2025-06-13 00:50:31,961 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:32,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/cca34cb278cac5fb8088df75cc4fe5f315810342/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:32,465 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:32,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/cca34cb278cac5fb8088df75cc4fe5f315810342/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:50:32,951 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:33,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/cca34cb278cac5fb8088df75cc4fe5f315810342 HTTP/1.1" 200 None 2025-06-13 00:50:33,402 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:33,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/cca34cb278cac5fb8088df75cc4fe5f315810342?per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:33,849 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:34,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/cca34cb278cac5fb8088df75cc4fe5f315810342 HTTP/1.1" 200 None 2025-06-13 00:50:34,389 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:34,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/cca34cb278cac5fb8088df75cc4fe5f315810342/status HTTP/1.1" 200 None 2025-06-13 00:50:34,611 [ scc.repo] DEBUG - PR 613 will-moore 'externalInfo display' 2025-06-13 00:50:34,862 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:35,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/612 HTTP/1.1" 200 None 2025-06-13 00:50:35,338 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:35,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/612/comments HTTP/1.1" 200 None 2025-06-13 00:50:35,840 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:36,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26 HTTP/1.1" 200 None 2025-06-13 00:50:36,347 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:36,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:36,855 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:37,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:50:37,383 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:37,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26 HTTP/1.1" 200 None 2025-06-13 00:50:37,892 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:38,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/06446bf912b361c22e46c5a0678b3146b91e7e26?per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:38,345 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:38,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26 HTTP/1.1" 200 None 2025-06-13 00:50:38,815 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:39,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26/status HTTP/1.1" 200 None 2025-06-13 00:50:39,011 [ scc.repo] DEBUG - PR 612 will-moore 'Allow top_links to wrap if too many for space' 2025-06-13 00:50:39,261 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:39,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/604 HTTP/1.1" 200 None 2025-06-13 00:50:39,809 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:40,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/604/comments HTTP/1.1" 200 None 2025-06-13 00:50:40,322 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:40,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d HTTP/1.1" 200 None 2025-06-13 00:50:40,841 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:41,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:41,336 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:41,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:50:41,842 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:42,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d HTTP/1.1" 200 None 2025-06-13 00:50:42,391 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:42,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/15e1289cb1c1533c8606b9c9f745d1f24575bb7d?per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:42,842 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:43,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d HTTP/1.1" 200 None 2025-06-13 00:50:43,309 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:43,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d/status HTTP/1.1" 200 None 2025-06-13 00:50:43,510 [ scc.repo] DEBUG - PR 604 will-moore 'Right panel perf' 2025-06-13 00:50:43,761 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:43,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/602 HTTP/1.1" 200 None 2025-06-13 00:50:44,239 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:44,502 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539 HTTP/1.1" 200 None 2025-06-13 00:50:44,755 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:45,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:45,254 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:45,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:50:45,748 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:45,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539 HTTP/1.1" 200 None 2025-06-13 00:50:46,208 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:46,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/9119372e9fef8cab0e212f02685c8715a3307539?per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:46,650 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:46,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539 HTTP/1.1" 200 None 2025-06-13 00:50:47,110 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:47,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539/status HTTP/1.1" 200 None 2025-06-13 00:50:47,303 [ scc.repo] DEBUG - PR 602 Tom-TBT 'Inherit all annotations' 2025-06-13 00:50:47,554 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:47,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/596 HTTP/1.1" 200 None 2025-06-13 00:50:48,039 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:48,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/596/comments HTTP/1.1" 200 None 2025-06-13 00:50:48,519 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:48,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8 HTTP/1.1" 200 None 2025-06-13 00:50:49,028 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:49,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:49,548 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:49,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:50:50,040 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:50,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8 HTTP/1.1" 200 None 2025-06-13 00:50:50,555 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:50,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/3aae48f586d7b412538a45b34ddc471a26a286e8?per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:51,011 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:51,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8 HTTP/1.1" 200 None 2025-06-13 00:50:51,447 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:51,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8/status HTTP/1.1" 200 None 2025-06-13 00:50:51,648 [ scc.repo] DEBUG - PR 596 sukunis 'Linkify can parse anchor tag' 2025-06-13 00:50:51,900 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:52,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/595 HTTP/1.1" 200 None 2025-06-13 00:50:52,389 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:52,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/595/comments HTTP/1.1" 200 None 2025-06-13 00:50:52,961 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:53,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb HTTP/1.1" 200 None 2025-06-13 00:50:53,512 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:53,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:54,054 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:54,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:50:54,563 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:54,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb HTTP/1.1" 200 None 2025-06-13 00:50:55,023 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:55,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/30278b64bb39134a3f1101b600d4a82256e6eaeb?per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:55,466 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:55,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb HTTP/1.1" 200 None 2025-06-13 00:50:56,006 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:56,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb/status HTTP/1.1" 200 None 2025-06-13 00:50:56,196 [ scc.repo] DEBUG - PR 595 sukunis 'linkify supports urls that include {}[] characters' 2025-06-13 00:50:56,447 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:56,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535 HTTP/1.1" 200 None 2025-06-13 00:50:56,934 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:57,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535/comments HTTP/1.1" 200 None 2025-06-13 00:50:57,410 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:57,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534 HTTP/1.1" 200 None 2025-06-13 00:50:57,923 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:58,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534/comments HTTP/1.1" 200 None 2025-06-13 00:50:58,458 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:58,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None 2025-06-13 00:50:58,992 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:59,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:50:59,451 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:50:59,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None 2025-06-13 00:50:59,973 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:00,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005?per_page=1 HTTP/1.1" 200 2 2025-06-13 00:51:00,167 [ scc.repo] DEBUG - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' 2025-06-13 00:51:00,418 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:00,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527 HTTP/1.1" 200 None 2025-06-13 00:51:00,930 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:01,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527/comments HTTP/1.1" 200 None 2025-06-13 00:51:01,438 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:01,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None 2025-06-13 00:51:01,944 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:02,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:51:02,440 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:02,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None 2025-06-13 00:51:02,900 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:03,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/5565fa5d8fdefd1a406a9951f80779817ea35767?per_page=1 HTTP/1.1" 200 2 2025-06-13 00:51:03,106 [ scc.repo] DEBUG - PR 527 will-moore 'Add some initial CSP settings to test' 2025-06-13 00:51:03,357 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:03,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168 HTTP/1.1" 200 None 2025-06-13 00:51:03,828 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:04,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168/comments HTTP/1.1" 200 None 2025-06-13 00:51:04,340 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:04,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200 HTTP/1.1" 200 None 2025-06-13 00:51:04,871 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:05,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-06-13 00:51:05,357 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:05,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-06-13 00:51:05,628 [ scc.repo] DEBUG ## Branches found: 2025-06-13 00:51:05,629 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web 2025-06-13 00:51:05,629 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:51:05,629 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:51:05,633 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-06-13 00:51:05,640 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-06-13 00:51:05,640 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-06-13 00:51:05,648 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-06-13 00:51:05,656 [ scc.git] DEBUG Already up to date. 2025-06-13 00:51:05,657 [ scc.git] DEBUG Calling 'git fetch origin pull/527/head' 2025-06-13 00:51:06,035 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-06-13 00:51:06,036 [ scc.git] DEBUG * branch refs/pull/527/head -> FETCH_HEAD 2025-06-13 00:51:06,043 [ scc.git] DEBUG Calling 'git fetch origin pull/534/head' 2025-06-13 00:51:06,337 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-06-13 00:51:06,337 [ scc.git] DEBUG * branch refs/pull/534/head -> FETCH_HEAD 2025-06-13 00:51:06,344 [ scc.git] DEBUG Calling 'git fetch origin pull/595/head' 2025-06-13 00:51:06,655 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-06-13 00:51:06,655 [ scc.git] DEBUG * branch refs/pull/595/head -> FETCH_HEAD 2025-06-13 00:51:06,666 [ scc.git] DEBUG Calling 'git fetch origin pull/596/head' 2025-06-13 00:51:06,987 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-06-13 00:51:06,987 [ scc.git] DEBUG * branch refs/pull/596/head -> FETCH_HEAD 2025-06-13 00:51:06,997 [ scc.git] DEBUG Calling 'git fetch origin pull/602/head' 2025-06-13 00:51:07,298 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-06-13 00:51:07,298 [ scc.git] DEBUG * branch refs/pull/602/head -> FETCH_HEAD 2025-06-13 00:51:07,305 [ scc.git] DEBUG Calling 'git fetch origin pull/604/head' 2025-06-13 00:51:07,624 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-06-13 00:51:07,624 [ scc.git] DEBUG * branch refs/pull/604/head -> FETCH_HEAD 2025-06-13 00:51:07,631 [ scc.git] DEBUG Calling 'git fetch origin pull/612/head' 2025-06-13 00:51:07,923 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-06-13 00:51:07,923 [ scc.git] DEBUG * branch refs/pull/612/head -> FETCH_HEAD 2025-06-13 00:51:07,931 [ scc.git] DEBUG Calling 'git fetch origin pull/613/head' 2025-06-13 00:51:08,232 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-06-13 00:51:08,232 [ scc.git] DEBUG * branch refs/pull/613/head -> FETCH_HEAD 2025-06-13 00:51:08,241 [ scc.git] DEBUG Calling 'git fetch origin pull/614/head' 2025-06-13 00:51:08,555 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-06-13 00:51:08,556 [ scc.git] DEBUG * branch refs/pull/614/head -> FETCH_HEAD 2025-06-13 00:51:08,562 [ scc.git] DEBUG Calling 'git fetch origin pull/616/head' 2025-06-13 00:51:08,856 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-06-13 00:51:08,856 [ scc.git] DEBUG * branch refs/pull/616/head -> FETCH_HEAD 2025-06-13 00:51:08,863 [ scc.git] DEBUG Calling 'git fetch origin pull/619/head' 2025-06-13 00:51:09,155 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-06-13 00:51:09,155 [ scc.git] DEBUG * branch refs/pull/619/head -> FETCH_HEAD 2025-06-13 00:51:09,166 [ scc.git] DEBUG Calling 'git fetch origin pull/621/head' 2025-06-13 00:51:09,472 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-06-13 00:51:09,472 [ scc.git] DEBUG * branch refs/pull/621/head -> FETCH_HEAD 2025-06-13 00:51:09,480 [ scc.git] DEBUG Calling 'git fetch origin pull/623/head' 2025-06-13 00:51:09,798 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-06-13 00:51:09,798 [ scc.git] DEBUG * branch refs/pull/623/head -> FETCH_HEAD 2025-06-13 00:51:09,803 [ scc.git] DEBUG ## Unique users: [] 2025-06-13 00:51:09,803 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:51:09,803 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:51:09,806 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5565fa5d8fdefd1a406a9951f80779817ea35767' 2025-06-13 00:51:09,818 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:51:09,821 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 527 (Add some initial CSP settings to test) 5565fa5d8fdefd1a406a9951f80779817ea35767' 2025-06-13 00:51:09,847 [ scc.git] DEBUG Auto-merging omeroweb/settings.py 2025-06-13 00:51:09,847 [ scc.git] DEBUG Auto-merging setup.py 2025-06-13 00:51:09,850 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:51:09,855 [ scc.git] DEBUG omeroweb/settings.py | 42 +++++++++++++++++++++++++++++++++++++++++- 2025-06-13 00:51:09,855 [ scc.git] DEBUG setup.py | 1 + 2025-06-13 00:51:09,855 [ scc.git] DEBUG 2 files changed, 42 insertions(+), 1 deletion(-) 2025-06-13 00:51:09,857 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:10,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:10,027 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d328a0cbb5b49cd63929a8a6c6cf7a89a925d005' 2025-06-13 00:51:10,038 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:51:10,041 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 534 (get strings from omero.cmd.ERR and omero.CmdError correctly) d328a0cbb5b49cd63929a8a6c6cf7a89a925d005' 2025-06-13 00:51:10,072 [ scc.git] DEBUG Auto-merging omeroweb/webclient/webclient_gateway.py 2025-06-13 00:51:10,073 [ scc.git] DEBUG Auto-merging omeroweb/webgateway/marshal.py 2025-06-13 00:51:10,075 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:51:10,083 [ scc.git] DEBUG omeroweb/webclient/webclient_gateway.py | 2 +- 2025-06-13 00:51:10,083 [ scc.git] DEBUG omeroweb/webgateway/marshal.py | 4 ++-- 2025-06-13 00:51:10,083 [ scc.git] DEBUG 2 files changed, 3 insertions(+), 3 deletions(-) 2025-06-13 00:51:10,278 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:10,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:10,437 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...30278b64bb39134a3f1101b600d4a82256e6eaeb' 2025-06-13 00:51:10,448 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:51:10,451 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 595 (linkify supports urls that include {}[] characters) 30278b64bb39134a3f1101b600d4a82256e6eaeb' 2025-06-13 00:51:10,485 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:51:10,493 [ scc.git] DEBUG omeroweb/webclient/static/webclient/javascript/ome.webclient.actions.js | 2 +- 2025-06-13 00:51:10,494 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-06-13 00:51:10,688 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:10,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:10,857 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3aae48f586d7b412538a45b34ddc471a26a286e8' 2025-06-13 00:51:10,868 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:51:10,871 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 596 (Linkify can parse anchor tag) 3aae48f586d7b412538a45b34ddc471a26a286e8' 2025-06-13 00:51:10,899 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:51:10,904 [ scc.git] DEBUG .../webclient/javascript/ome.webclient.actions.js | 26 ++++++++++++++++++++-- 2025-06-13 00:51:10,904 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-) 2025-06-13 00:51:11,108 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:11,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:11,272 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9119372e9fef8cab0e212f02685c8715a3307539' 2025-06-13 00:51:11,282 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:51:11,285 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 602 (Inherit all annotations) 9119372e9fef8cab0e212f02685c8715a3307539' 2025-06-13 00:51:11,318 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:51:11,328 [ scc.git] DEBUG omeroweb/webclient/static/webclient/css/dusty.css | 1 - 2025-06-13 00:51:11,328 [ scc.git] DEBUG .../javascript/ome.right_panel_comments_pane.js | 134 +++++++++++++++++++-- 2025-06-13 00:51:11,328 [ scc.git] DEBUG .../javascript/ome.right_panel_fileanns_pane.js | 80 +++++++++++- 2025-06-13 00:51:11,328 [ scc.git] DEBUG .../javascript/ome.right_panel_mapanns_pane.js | 6 +- 2025-06-13 00:51:11,328 [ scc.git] DEBUG .../javascript/ome.right_panel_ratings_pane.js | 33 ++++- 2025-06-13 00:51:11,328 [ scc.git] DEBUG .../javascript/ome.right_panel_tags_pane.js | 92 ++++++++++++-- 2025-06-13 00:51:11,328 [ scc.git] DEBUG .../webclient/annotations/comments_underscore.html | 58 +++++++-- 2025-06-13 00:51:11,328 [ scc.git] DEBUG .../webclient/annotations/fileanns_underscore.html | 81 ++++++++----- 2025-06-13 00:51:11,328 [ scc.git] DEBUG .../webclient/annotations/mapanns_underscore.html | 4 + 2025-06-13 00:51:11,328 [ scc.git] DEBUG .../webclient/annotations/ratings_underscore.html | 4 +- 2025-06-13 00:51:11,329 [ scc.git] DEBUG .../webclient/annotations/tags_underscore.html | 30 +++-- 2025-06-13 00:51:11,329 [ scc.git] DEBUG 11 files changed, 447 insertions(+), 76 deletions(-) 2025-06-13 00:51:11,523 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:11,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:11,690 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...15e1289cb1c1533c8606b9c9f745d1f24575bb7d' 2025-06-13 00:51:11,701 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:51:11,704 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 604 (Right panel perf) 15e1289cb1c1533c8606b9c9f745d1f24575bb7d' 2025-06-13 00:51:11,745 [ scc.git] DEBUG Auto-merging omeroweb/webclient/views.py 2025-06-13 00:51:11,749 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:51:11,757 [ scc.git] DEBUG omeroweb/webclient/controller/container.py | 66 ++++++++++------------ 2025-06-13 00:51:11,757 [ scc.git] DEBUG .../webclient/annotations/annotations_share.html | 12 +--- 2025-06-13 00:51:11,757 [ scc.git] DEBUG omeroweb/webclient/views.py | 51 ----------------- 2025-06-13 00:51:11,757 [ scc.git] DEBUG 3 files changed, 31 insertions(+), 98 deletions(-) 2025-06-13 00:51:11,941 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:12,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:12,113 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...06446bf912b361c22e46c5a0678b3146b91e7e26' 2025-06-13 00:51:12,125 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:51:12,128 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 612 (Allow top_links to wrap if too many for space) 06446bf912b361c22e46c5a0678b3146b91e7e26' 2025-06-13 00:51:12,166 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:51:12,172 [ scc.git] DEBUG .../webgateway/static/webgateway/css/ome.body.css | 2 ++ 2025-06-13 00:51:12,172 [ scc.git] DEBUG .../webgateway/static/webgateway/css/ome.header.css | 21 +++++++++++---------- 2025-06-13 00:51:12,172 [ scc.git] DEBUG 2 files changed, 13 insertions(+), 10 deletions(-) 2025-06-13 00:51:12,364 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:12,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:12,557 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cca34cb278cac5fb8088df75cc4fe5f315810342' 2025-06-13 00:51:12,570 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:51:12,576 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 613 (externalInfo display) cca34cb278cac5fb8088df75cc4fe5f315810342' 2025-06-13 00:51:12,609 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:51:12,617 [ scc.git] DEBUG .../webclient/annotations/includes/toolbar.html | 20 ++++++++++++-- 2025-06-13 00:51:12,617 [ scc.git] DEBUG .../webclient/annotations/metadata_general.html | 31 +++++++++++++++------- 2025-06-13 00:51:12,617 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 2 ++ 2025-06-13 00:51:12,617 [ scc.git] DEBUG 3 files changed, 42 insertions(+), 11 deletions(-) 2025-06-13 00:51:12,808 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:12,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:12,971 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...da14d11b161eb8aa90a6e4729758ea504d5914e3' 2025-06-13 00:51:12,983 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:51:12,987 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 614 (CodeQL workflow updates) da14d11b161eb8aa90a6e4729758ea504d5914e3' 2025-06-13 00:51:13,016 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:51:13,029 [ scc.git] DEBUG .github/workflows/codeql-analysis.yml | 55 +++++++---------------------------- 2025-06-13 00:51:13,029 [ scc.git] DEBUG 1 file changed, 11 insertions(+), 44 deletions(-) 2025-06-13 00:51:13,222 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:13,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:13,462 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c6401a8d78f907d300ef6a6bb673efa86374ecc4' 2025-06-13 00:51:13,475 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:51:13,480 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 616 (Use the release/v1 branch for the PyPA action publishing to PyPI) c6401a8d78f907d300ef6a6bb673efa86374ecc4' 2025-06-13 00:51:13,508 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:51:13,521 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-06-13 00:51:13,521 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-06-13 00:51:13,713 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:13,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:13,883 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6dbfcebfee72e20f36a434fdc8850930d89acdac' 2025-06-13 00:51:13,895 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:51:13,900 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 619 (Permit subpackages as app plugins) 6dbfcebfee72e20f36a434fdc8850930d89acdac' 2025-06-13 00:51:13,929 [ scc.git] DEBUG Auto-merging omeroweb/settings.py 2025-06-13 00:51:13,932 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:51:13,939 [ scc.git] DEBUG omeroweb/settings.py | 9 ++++----- 2025-06-13 00:51:13,939 [ scc.git] DEBUG 1 file changed, 4 insertions(+), 5 deletions(-) 2025-06-13 00:51:14,134 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:14,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:14,311 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1f6b7dc5e59341f99678864923ba89565ce27956' 2025-06-13 00:51:14,323 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:51:14,326 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 621 (/webgateway/original_file_paths: handle images without Fileset) 1f6b7dc5e59341f99678864923ba89565ce27956' 2025-06-13 00:51:14,363 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:51:14,374 [ scc.git] DEBUG omeroweb/webgateway/views.py | 2 ++ 2025-06-13 00:51:14,374 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2025-06-13 00:51:14,562 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:14,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:14,735 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...0343a1acda423eef3ca919c785761c5963a0b353' 2025-06-13 00:51:14,746 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:51:14,749 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 623 (Replace fromstring by frombytes) 0343a1acda423eef3ca919c785761c5963a0b353' 2025-06-13 00:51:14,781 [ scc.git] DEBUG Auto-merging omeroweb/webgateway/views.py 2025-06-13 00:51:14,783 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-06-13 00:51:14,790 [ scc.git] DEBUG omeroweb/webgateway/views.py | 2 +- 2025-06-13 00:51:14,790 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-06-13 00:51:14,986 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:15,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:15,181 [ scc.git] DEBUG Calling 'git submodule update' 2025-06-13 00:51:15,316 [ scc.git] DEBUG Get sha1 of %s 2025-06-13 00:51:15,317 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-06-13 00:51:15,321 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-06-13 00:51:15,452 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-06-13 00:51:15,467 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f45d5499a90> has no local changes 2025-06-13 00:51:15,467 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web Excluded PRs: - PR 617 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 535 will-moore 'Initial working browser history' (stage: draft) - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure) Already up to date. Merged PRs: - PR 527 will-moore 'Add some initial CSP settings to test' - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' - PR 595 sukunis 'linkify supports urls that include {}[] characters' - PR 596 sukunis 'Linkify can parse anchor tag' - PR 602 Tom-TBT 'Inherit all annotations' - PR 604 will-moore 'Right panel perf' - PR 612 will-moore 'Allow top_links to wrap if too many for space' - PR 613 will-moore 'externalInfo display' - PR 614 sbesson 'CodeQL workflow updates' - PR 616 sbesson 'Use the release/v1 branch for the PyPA action publishing to PyPI' - PR 619 DavidStirling 'Permit subpackages as app plugins' - PR 621 sbesson '/webgateway/original_file_paths: handle images without Fileset' - PR 623 jburel 'Replace fromstring by frombytes' Generated by OMERO-python-superbuild-push#437 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/437/)' 2025-06-13 00:51:15,489 [ scc.git] DEBUG [detached HEAD af9ca2197] merge master -Dorg -Ssuccess-only 2025-06-13 00:51:15,490 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-06-13 00:51:15,491 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-06-13 00:51:15,652 [ scc.config] DEBUG Found submodule.omero-dropbox.url 2025-06-13 00:51:15,653 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:15,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:15,845 [ scc.config] DEBUG Found submodule.omero-marshal.url 2025-06-13 00:51:16,086 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:16,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:16,259 [ scc.config] DEBUG Found submodule.omero-py.url 2025-06-13 00:51:16,496 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:16,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:16,674 [ scc.config] DEBUG Found submodule.omero-scripts.url 2025-06-13 00:51:16,914 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:17,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:17,108 [ scc.config] DEBUG Found submodule.omero-web.url 2025-06-13 00:51:17,342 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-06-13 00:51:17,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-06-13 00:51:17,531 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-06-13 00:51:17,590 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f45d2d18f90> has local changes 2025-06-13 00:51:17,591 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-python-superbuild Already up to date. Merged PRs: - PR 320 dependabot[bot] 'Bump omero-web from `4b979f8` to `c1b8fef`' - PR 321 dependabot[bot] 'Bump omero-py from `e485be4` to `d2f8480`' Repository: ome/omero-dropbox Already up to date. Merged PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' Repository: ome/omero-marshal Excluded PRs: - PR 84 joshmoore 'New JSON-LD context-based version' (stage: draft) - PR 34 chris-allan 'Initial support for Event' (exclude comment) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) Already up to date. Merged PRs: - PR 69 will-moore 'Roi encoder allows Shape None' Repository: ome/omero-py Excluded PRs: - PR 459 Tom-TBT 'Wrapper improvements for ROIs' (stage: draft) - PR 450 multimeric 'Add model stubs' (user: multimeric) - PR 443 sbesson 'Gateway tests: remove logic downloading public DV files for testing' (label: exclude) - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure) - PR 299 joshmoore 'Add parents and children to omero obj' (exclude comment) Already up to date. Merged PRs: - PR 199 joshmoore 'user: allow setting default group' - PR 332 jburel 'Build conda' - PR 391 joshmoore 'Add jstack command' - PR 408 jburel 'remove deprecated method' - PR 460 sbesson 'omero.testlib: rename test_dir utility as create_managed_dir' - PR 461 jburel 'Replace to/fromstring by to/frombytes' Repository: ome/omero-scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Already up to date. Merged PRs: - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 227 jburel 'Replace tostring by tobytes' Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Repository: ome/omero-web Excluded PRs: - PR 617 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 535 will-moore 'Initial working browser history' (stage: draft) - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure) Already up to date. Merged PRs: - PR 527 will-moore 'Add some initial CSP settings to test' - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' - PR 595 sukunis 'linkify supports urls that include {}[] characters' - PR 596 sukunis 'Linkify can parse anchor tag' - PR 602 Tom-TBT 'Inherit all annotations' - PR 604 will-moore 'Right panel perf' - PR 612 will-moore 'Allow top_links to wrap if too many for space' - PR 613 will-moore 'externalInfo display' - PR 614 sbesson 'CodeQL workflow updates' - PR 616 sbesson 'Use the release/v1 branch for the PyPA action publishing to PyPI' - PR 619 DavidStirling 'Permit subpackages as app plugins' - PR 621 sbesson '/webgateway/original_file_paths: handle images without Fileset' - PR 623 jburel 'Replace fromstring by frombytes' Generated by OMERO-python-superbuild-push#437 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/437/)' 2025-06-13 00:51:17,612 [ scc.git] DEBUG [detached HEAD 16889b1] merge master -Dorg -Ssuccess-only 2025-06-13 00:51:17,613 [ scc.git] DEBUG 6 files changed, 10 insertions(+), 10 deletions(-) 2025-06-13 00:51:17,615 [ scc.merge] INFO Repository: ome/omero-python-superbuild 2025-06-13 00:51:17,615 [ scc.merge] INFO Already up to date. 2025-06-13 00:51:17,615 [ scc.merge] INFO 2025-06-13 00:51:17,615 [ scc.merge] INFO Merged PRs: 2025-06-13 00:51:17,615 [ scc.merge] INFO - PR 320 dependabot[bot] 'Bump omero-web from `4b979f8` to `c1b8fef`' 2025-06-13 00:51:17,615 [ scc.merge] INFO - PR 321 dependabot[bot] 'Bump omero-py from `e485be4` to `d2f8480`' 2025-06-13 00:51:17,615 [ scc.merge] INFO 2025-06-13 00:51:17,615 [ scc.merge] INFO Repository: ome/omero-dropbox 2025-06-13 00:51:17,615 [ scc.merge] INFO Already up to date. 2025-06-13 00:51:17,615 [ scc.merge] INFO 2025-06-13 00:51:17,615 [ scc.merge] INFO Merged PRs: 2025-06-13 00:51:17,615 [ scc.merge] INFO - PR 16 joshmoore 'Review all instances of whitelist/blacklist' 2025-06-13 00:51:17,615 [ scc.merge] INFO 2025-06-13 00:51:17,615 [ scc.merge] INFO Repository: ome/omero-marshal 2025-06-13 00:51:17,615 [ scc.merge] INFO Excluded PRs: 2025-06-13 00:51:17,615 [ scc.merge] INFO - PR 84 joshmoore 'New JSON-LD context-based version' (stage: draft) 2025-06-13 00:51:17,615 [ scc.merge] INFO - PR 34 chris-allan 'Initial support for Event' (exclude comment) 2025-06-13 00:51:17,615 [ scc.merge] INFO - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) 2025-06-13 00:51:17,615 [ scc.merge] INFO Already up to date. 2025-06-13 00:51:17,615 [ scc.merge] INFO 2025-06-13 00:51:17,615 [ scc.merge] INFO Merged PRs: 2025-06-13 00:51:17,615 [ scc.merge] INFO - PR 69 will-moore 'Roi encoder allows Shape None' 2025-06-13 00:51:17,616 [ scc.merge] INFO 2025-06-13 00:51:17,616 [ scc.merge] INFO Repository: ome/omero-py 2025-06-13 00:51:17,616 [ scc.merge] INFO Excluded PRs: 2025-06-13 00:51:17,616 [ scc.merge] INFO - PR 459 Tom-TBT 'Wrapper improvements for ROIs' (stage: draft) 2025-06-13 00:51:17,616 [ scc.merge] INFO - PR 450 multimeric 'Add model stubs' (user: multimeric) 2025-06-13 00:51:17,616 [ scc.merge] INFO - PR 443 sbesson 'Gateway tests: remove logic downloading public DV files for testing' (label: exclude) 2025-06-13 00:51:17,616 [ scc.merge] INFO - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure) 2025-06-13 00:51:17,616 [ scc.merge] INFO - PR 299 joshmoore 'Add parents and children to omero obj' (exclude comment) 2025-06-13 00:51:17,616 [ scc.merge] INFO Already up to date. 2025-06-13 00:51:17,616 [ scc.merge] INFO 2025-06-13 00:51:17,616 [ scc.merge] INFO Merged PRs: 2025-06-13 00:51:17,616 [ scc.merge] INFO - PR 199 joshmoore 'user: allow setting default group' 2025-06-13 00:51:17,616 [ scc.merge] INFO - PR 332 jburel 'Build conda' 2025-06-13 00:51:17,616 [ scc.merge] INFO - PR 391 joshmoore 'Add jstack command' 2025-06-13 00:51:17,616 [ scc.merge] INFO - PR 408 jburel 'remove deprecated method' 2025-06-13 00:51:17,616 [ scc.merge] INFO - PR 460 sbesson 'omero.testlib: rename test_dir utility as create_managed_dir' 2025-06-13 00:51:17,616 [ scc.merge] INFO - PR 461 jburel 'Replace to/fromstring by to/frombytes' 2025-06-13 00:51:17,616 [ scc.merge] INFO 2025-06-13 00:51:17,616 [ scc.merge] INFO Repository: ome/omero-scripts 2025-06-13 00:51:17,616 [ scc.merge] INFO Excluded PRs: 2025-06-13 00:51:17,616 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) 2025-06-13 00:51:17,616 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) 2025-06-13 00:51:17,616 [ scc.merge] INFO Already up to date. 2025-06-13 00:51:17,616 [ scc.merge] INFO 2025-06-13 00:51:17,616 [ scc.merge] INFO Merged PRs: 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes' 2025-06-13 00:51:17,617 [ scc.merge] INFO 2025-06-13 00:51:17,617 [ scc.merge] INFO Conflicting PRs (not included): 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2025-06-13 00:51:17,617 [ scc.merge] INFO 2025-06-13 00:51:17,617 [ scc.merge] INFO Repository: ome/omero-web 2025-06-13 00:51:17,617 [ scc.merge] INFO Excluded PRs: 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 617 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 535 will-moore 'Initial working browser history' (stage: draft) 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure) 2025-06-13 00:51:17,617 [ scc.merge] INFO Already up to date. 2025-06-13 00:51:17,617 [ scc.merge] INFO 2025-06-13 00:51:17,617 [ scc.merge] INFO Merged PRs: 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 527 will-moore 'Add some initial CSP settings to test' 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 595 sukunis 'linkify supports urls that include {}[] characters' 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 596 sukunis 'Linkify can parse anchor tag' 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 602 Tom-TBT 'Inherit all annotations' 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 604 will-moore 'Right panel perf' 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 612 will-moore 'Allow top_links to wrap if too many for space' 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 613 will-moore 'externalInfo display' 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 614 sbesson 'CodeQL workflow updates' 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 616 sbesson 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 619 DavidStirling 'Permit subpackages as app plugins' 2025-06-13 00:51:17,617 [ scc.merge] INFO - PR 621 sbesson '/webgateway/original_file_paths: handle images without Fileset' 2025-06-13 00:51:17,618 [ scc.merge] INFO - PR 623 jburel 'Replace fromstring by frombytes' 2025-06-13 00:51:17,618 [ scc.merge] INFO 2025-06-13 00:51:17,618 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-06-13 00:51:17,618 [ scc.git] DEBUG Calling 'git remote' 2025-06-13 00:51:17,623 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox 2025-06-13 00:51:17,623 [ scc.git] DEBUG Calling 'git remote' 2025-06-13 00:51:17,630 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-06-13 00:51:17,630 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal 2025-06-13 00:51:17,630 [ scc.git] DEBUG Calling 'git remote' 2025-06-13 00:51:17,636 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-06-13 00:51:17,636 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py 2025-06-13 00:51:17,636 [ scc.git] DEBUG Calling 'git remote' 2025-06-13 00:51:17,639 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-06-13 00:51:17,639 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts 2025-06-13 00:51:17,639 [ scc.git] DEBUG Calling 'git remote' 2025-06-13 00:51:17,646 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-06-13 00:51:17,646 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web 2025-06-13 00:51:17,646 [ scc.git] DEBUG Calling 'git remote' 2025-06-13 00:51:17,652 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push Update component versions Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.8.1-python.zip ... Traceback (most recent call last): File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module> download_blitz_target() File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target resp = urlopen(loc) ^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 216, in urlopen return opener.open(url, data, timeout) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 525, in open response = meth(req, response) ^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 634, in http_response response = self.parent.error( ^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 563, in error return self._call_chain(*args) ^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 496, in _call_chain result = func(*args) ^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 643, in http_error_default raise HTTPError(req.full_url, code, msg, hdrs, fp) urllib.error.HTTPError: HTTP Error 504: Gateway Time-out Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.8.1-python.zip ... Traceback (most recent call last): File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module> download_blitz_target() File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target resp = urlopen(loc) ^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 216, in urlopen return opener.open(url, data, timeout) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 525, in open response = meth(req, response) ^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 634, in http_response response = self.parent.error( ^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 563, in error return self._call_chain(*args) ^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 496, in _call_chain result = func(*args) ^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 643, in http_error_default raise HTTPError(req.full_url, code, msg, hdrs, fp) urllib.error.HTTPError: HTTP Error 504: Gateway Time-out grep: build.gradle: No such file or directory Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Commit all component version changes Entering 'omero-dropbox' Entering 'omero-marshal' Entering 'omero-py' Entering 'omero-scripts' Entering 'omero-web' Entering 'omero-dropbox' HEAD detached from 01fa0c5 nothing to commit, working tree clean Entering 'omero-marshal' HEAD detached from 6d44f66 nothing to commit, working tree clean Entering 'omero-py' HEAD detached from d2f84801 nothing to commit, working tree clean Entering 'omero-scripts' HEAD detached from 950b28b nothing to commit, working tree clean Entering 'omero-web' HEAD detached from c1b8fefc8 nothing to commit, working tree clean HEAD detached from 155f8de nothing to commit, working tree clean 2025-06-13 00:53:49,181 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-python-superbuild/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS