Skip to content

Changes

Summary

  1. Bump bioformats from `3b94f85` to `adf3c52` (details)
  2. Bump bio-formats-documentation from `dc91d85` to `1dc4881` (details)
  3. Bump bio-formats-examples from `9955ace` to `6a2fb0f` (details)
  4. merge master -Dorg -Ssuccess-only (details)
  5. Update component versions (details)
Commit 1857c980b1fa0f1132862e62cb1b058068e4fd39 by noreply
Bump bioformats from `3b94f85` to `adf3c52`

Bumps [bioformats](https://github.com/openmicroscopy/bioformats) from `3b94f85` to `adf3c52`.
- [Release notes](https://github.com/openmicroscopy/bioformats/releases)
- [Commits](https://github.com/openmicroscopy/bioformats/compare/3b94f8568b78b2001ccbe4c93535e6a60ea1b399...adf3c52843883efc4dea7f3b7550129ac6e46c85)

---
updated-dependencies:
- dependency-name: bioformats
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
The file was modified bioformats (diff)
Commit 05a7c2ddfc8097af6315a3b308320d2d3cccfd47 by noreply
Bump bio-formats-documentation from `dc91d85` to `1dc4881`

Bumps [bio-formats-documentation](https://github.com/ome/bio-formats-documentation) from `dc91d85` to `1dc4881`.
- [Commits](https://github.com/ome/bio-formats-documentation/compare/dc91d8524de5acafb3e507780e9da8ce7ce9094d...1dc488150a846d493bbd224401cd0dbe70797989)

---
updated-dependencies:
- dependency-name: bio-formats-documentation
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
The file was modified bio-formats-documentation (diff)
Commit 225e3c2481620a13d767198356b8b5375bfd117d by noreply
Bump bio-formats-examples from `9955ace` to `6a2fb0f`

Bumps [bio-formats-examples](https://github.com/ome/bio-formats-examples) from `9955ace` to `6a2fb0f`.
- [Commits](https://github.com/ome/bio-formats-examples/compare/9955ace884a4a58b6b6ba84a04738bda84a00f33...6a2fb0f446966a8ef5a6686e5778388f1d078a62)

---
updated-dependencies:
- dependency-name: bio-formats-examples
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
The file was modified bio-formats-examples (diff)
Commit 8016f6cff58eed7d22c62ec6383a650809ea94a1 by snoopycrimecop
merge master -Dorg -Ssuccess-only

Repository: ome/bio-formats-build
Already up to date.

Merged PRs:
  - PR 622 dependabot[bot] 'Bump bioformats from `3b94f85` to `adf3c52`'
  - PR 623 dependabot[bot] 'Bump bio-formats-documentation from `dc91d85` to `1dc4881`'
  - PR 624 dependabot[bot] 'Bump bio-formats-examples from `9955ace` to `6a2fb0f`'

Repository: ome/ZarrReader
Excluded PRs:
  - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment)
Already up to date.

Repository: ome/bio-formats-documentation
Already up to date.

Repository: ome/bio-formats-examples
Already up to date.

Merged PRs:
  - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop'
  - PR 127 jburel 'Matlab Examples'

Conflicting PRs (not included):
  - PR 128 sbesson 'Relicense Bio-Formats examples under BSD 2-clause'

Repository: openmicroscopy/bioformats
Excluded PRs:
  - PR 4205 NicoKiaru 'OIRReader: Major performance improvement when reading a ROI within a plane' (user: NicoKiaru)
  - PR 4200 tstoeter 'Allow processing multiple files sequentially in a single run, with file names read from stdin.' (user: tstoeter)
  - PR 4195 WalkerKnapp 'Andor SIF: Support files larger than 4 GB and with non-fixed-size footers' (user: WalkerKnapp)
  - PR 4190 melissalinkert 'Extend precompressed support to read DICOM and write TIFF/OME-TIFF' (stage: draft)
  - PR 4172 sbesson 'testSaneUsedFiles: check getCurrentFile is the first file in the getUsedFiles list' (stage: draft)
  - PR 4164 melissalinkert 'Reduce DICOM write time' (stage: draft)
  - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure)
  - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru)
  - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats)
  - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude)
  - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking)
  - PR 3537 dgault 'Flex: Merge IDR changes and add new group plate option' (label: exclude)
Already up to date.

Merged PRs:
  - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)'
  - PR 4181 melissalinkert 'Add support for reading compressed NDPI tiles'
  - PR 4196 melissalinkert 'DICOM: use FrameTimePointer to detect timelapse data'
  - PR 4198 cqian89 'SDT: fix NegativeArraySizeException when reading files recorded by SPCM64 9.90'
  - PR 4203 melissalinkert 'CV7000/8000: fix used files list when TIFFs are in a subdirectory'

Repository: ome/ome-codecs
Already up to date.

Merged PRs:
  - PR 37 melissalinkert 'JPEG: warn if quality is outside [0.25, 1.0]'

Repository: ome/ome-common-java
Excluded PRs:
  - PR 59 NicoKiaru 'adds AverageImageScaler implementation of IImageScaler' (user: NicoKiaru)
Already up to date.

Repository: ome/ome-jai
Already up to date.

Repository: ome/ome-mdbtools
Already up to date.

Repository: ome/ome-metakit
Already up to date.

Repository: ome/ome-model
Already up to date.

Conflicting PRs (not included):
  - PR 174 jburel 'Remove docs'

Repository: ome/ome-poi
Already up to date.

Repository: ome/ome-stubs
Already up to date.

Generated by BIOFORMATS-push#129 (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/129/)
The file was modified ome-metakit (diff)
The file was modified ome-poi (diff)
The file was modified ZarrReader (diff)
The file was modified ome-mdbtools (diff)
The file was modified bioformats (diff)
The file was modified ome-jai (diff)
The file was modified .gitmodules (diff)
The file was modified ome-common-java (diff)
The file was modified ome-stubs (diff)
The file was modified bio-formats-documentation (diff)
The file was modified bio-formats-examples (diff)
The file was modified ome-model (diff)
The file was modified ome-codecs (diff)
Commit 87dee86e36a19b2dce1db89f8accf113ef4755ee by snoopycrimecop
Update component versions
The file was modified ome-codecs (diff)
The file was modified bioformats (diff)
The file was modified bio-formats-examples (diff)
The file was modified bio-formats-documentation (diff)
The file was modified ome-metakit (diff)
The file was modified ome-model (diff)
The file was modified ome-poi (diff)