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Downloaded from central: https://repo.maven.apache.org/maven2/commons-math/commons-math/1.2/commons-math-1.2.jar (338 kB at 1.7 MB/s)
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Downloaded from central: https://repo.maven.apache.org/maven2/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar (6.0 MB at 14 MB/s)
#14 289.9 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#14 289.9 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (80 kB at 88 kB/s)
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (4.3 MB at 1.5 MB/s)
#14 292.8 [[1;34mINFO[m]
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#14 292.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 292.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 292.8 [[1;34mINFO[m] Storing buildNumber: b6bcc2e2a66fe40dd1f14d8b45e5742b2b1b9748 at timestamp: 1733357861829
#14 292.8 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 292.8 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 292.8
#14 292.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 292.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 292.8 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
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#14 292.8 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 292.8 [[1;34mINFO[m] Compiling 174 source files to /bio-formats-build/bioformats/components/formats-gpl/target/classes
#14 295.0 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Some input files use or override a deprecated API.
#14 295.0 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Recompile with -Xlint:deprecation for details.
#14 295.0 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Some input files use unchecked or unsafe operations.
#14 295.0 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Recompile with -Xlint:unchecked for details.
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#14 295.0 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 295.0 [[1;34mINFO[m] Compiling 23 source files to /bio-formats-build/bioformats/components/formats-gpl/target/test-classes
#14 295.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java uses unchecked or unsafe operations.
#14 295.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: Recompile with -Xlint:unchecked for details.
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#14 295.2 [[1;34mINFO[m] -------------------------------------------------------
#14 295.2 [[1;34mINFO[m] T E S T S
#14 295.2 [[1;34mINFO[m] -------------------------------------------------------
#14 295.3 [[1;34mINFO[m] Running [1mTestSuite[m
#14 296.6 2024-12-05 00:17:45,656 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@282308c3 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 296.6 2024-12-05 00:17:45,659 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@2bffa76d reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 296.6 2024-12-05 00:17:45,712 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@2f19f2aa reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 296.6 2024-12-05 00:17:45,712 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@344b8190 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 296.7 2024-12-05 00:17:45,762 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@4287d447 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 296.7 2024-12-05 00:17:45,762 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@3af37506 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 296.7 2024-12-05 00:17:45,811 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@7dcc91fd reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 296.7 2024-12-05 00:17:45,812 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@36453307 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 296.8 2024-12-05 00:17:45,858 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@352e612e reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 296.8 2024-12-05 00:17:45,859 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@49b07ee3 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 296.9 2024-12-05 00:17:45,924 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@3122b117 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 296.9 2024-12-05 00:17:45,924 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@2bc12da reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 296.9 2024-12-05 00:17:45,973 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@693e4d19 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 296.9 2024-12-05 00:17:45,973 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@286b39c2 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 296.9 2024-12-05 00:17:46,018 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@201aa8c1 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 296.9 2024-12-05 00:17:46,018 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@5d58c727 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 297.2 [[1;34mINFO[m] [1;32mTests run: [0;1;32m99[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.875 s - in [1mTestSuite[m
#14 297.5 [[1;34mINFO[m]
#14 297.5 [[1;34mINFO[m] Results:
#14 297.5 [[1;34mINFO[m]
#14 297.5 [[1;34mINFO[m] [1;32mTests run: 99, Failures: 0, Errors: 0, Skipped: 0[m
#14 297.5 [[1;34mINFO[m]
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#14 297.5 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-mdb-test)[m @ [36mformats-gpl[0;1m ---[m
#14 297.6 [[1;34mINFO[m]
#14 297.6 [[1;34mINFO[m] -------------------------------------------------------
#14 297.6 [[1;34mINFO[m] T E S T S
#14 297.6 [[1;34mINFO[m] -------------------------------------------------------
#14 297.7 [[1;34mINFO[m] Running [1mTestSuite[m
#14 298.1 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.425 s - in [1mTestSuite[m
#14 298.5 [[1;34mINFO[m]
#14 298.5 [[1;34mINFO[m] Results:
#14 298.5 [[1;34mINFO[m]
#14 298.5 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 298.5 [[1;34mINFO[m]
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#14 298.5 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-poi-test)[m @ [36mformats-gpl[0;1m ---[m
#14 298.5 [[1;34mINFO[m]
#14 298.5 [[1;34mINFO[m] -------------------------------------------------------
#14 298.5 [[1;34mINFO[m] T E S T S
#14 298.5 [[1;34mINFO[m] -------------------------------------------------------
#14 298.6 [[1;34mINFO[m] Running [1mTestSuite[m
#14 299.1 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.433 s - in [1mTestSuite[m
#14 299.4 [[1;34mINFO[m]
#14 299.4 [[1;34mINFO[m] Results:
#14 299.4 [[1;34mINFO[m]
#14 299.4 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 299.4 [[1;34mINFO[m]
#14 299.4 [[1;34mINFO[m]
#14 299.4 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-netcdf-test)[m @ [36mformats-gpl[0;1m ---[m
#14 299.4 [[1;34mINFO[m]
#14 299.4 [[1;34mINFO[m] -------------------------------------------------------
#14 299.4 [[1;34mINFO[m] T E S T S
#14 299.4 [[1;34mINFO[m] -------------------------------------------------------
#14 299.6 [[1;34mINFO[m] Running [1mTestSuite[m
#14 300.0 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.412 s - in [1mTestSuite[m
#14 300.3 [[1;34mINFO[m]
#14 300.3 [[1;34mINFO[m] Results:
#14 300.3 [[1;34mINFO[m]
#14 300.3 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 300.3 [[1;34mINFO[m]
#14 300.3 [[1;34mINFO[m]
#14 300.3 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mformats-gpl[0;1m ---[m
#14 300.3 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT.jar
#14 300.4 [[1;34mINFO[m]
#14 300.4 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m >>>[m
#14 300.4 [[1;34mINFO[m]
#14 300.4 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mformats-gpl[0;1m ---[m
#14 300.4 [[1;34mINFO[m]
#14 300.4 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 300.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 300.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 300.4 [[1;34mINFO[m] Storing buildNumber: b6bcc2e2a66fe40dd1f14d8b45e5742b2b1b9748 at timestamp: 1733357869426
#14 300.4 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 300.4 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 300.4
#14 300.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 300.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 300.4 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 300.4 [[1;34mINFO[m]
#14 300.4 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m <<<[m
#14 300.4 [[1;34mINFO[m]
#14 300.4 [[1;34mINFO[m]
#14 300.4 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 300.4 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-sources.jar
#14 300.4 [[1;34mINFO[m]
#14 300.4 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 300.4 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-tests.jar
#14 300.4 [[1;34mINFO[m]
#14 300.4 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mformats-gpl[0;1m ---[m
#14 300.5 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#14 300.5 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#14 300.5 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-sources.jar
#14 300.5 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-tests.jar
#14 300.5 [[1;34mINFO[m]
#14 300.5 [[1;34mINFO[m] [1m----------------------< [0;36mome:bio-formats_plugins[0;1m >-----------------------[m
#14 300.5 [[1;34mINFO[m] [1mBuilding Bio-Formats Plugins for ImageJ 8.1.0-SNAPSHOT [17/24][m
#14 300.5 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 300.5 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom
#14 300.5 Progress (1): 4.1/7.9 kB
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#14 300.5 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar
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#14 300.7 [[1;34mINFO[m]
#14 300.7 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 300.7 [[1;34mINFO[m]
#14 300.7 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 300.7 [[1;34mINFO[m]
#14 300.7 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 300.7 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 300.7 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 300.7 [[1;34mINFO[m] Storing buildNumber: b6bcc2e2a66fe40dd1f14d8b45e5742b2b1b9748 at timestamp: 1733357869776
#14 300.7 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 300.7 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 300.7
#14 300.7 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 300.7 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 300.7 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 300.7 [[1;34mINFO[m]
#14 300.7 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 300.7 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 300.7 [[1;34mINFO[m] Copying 3 resources
#14 300.7 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-plugins/lib
#14 300.7 [[1;34mINFO[m] Copying 0 resource
#14 300.7 [[1;34mINFO[m] Copying 0 resource
#14 300.7 [[1;34mINFO[m]
#14 300.7 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 300.7 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 300.7 [[1;34mINFO[m] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/classes
#14 301.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Some input files use or override a deprecated API.
#14 301.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Recompile with -Xlint:deprecation for details.
#14 301.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#14 301.2 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: Recompile with -Xlint:unchecked for details.
#14 301.2 [[1;34mINFO[m]
#14 301.2 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 301.2 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 301.2 [[1;34mINFO[m] Copying 1 resource
#14 301.2 [[1;34mINFO[m]
#14 301.2 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 301.2 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 301.2 [[1;34mINFO[m] Compiling 3 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/test-classes
#14 301.4 [[1;34mINFO[m]
#14 301.4 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 301.4 [[1;34mINFO[m]
#14 301.4 [[1;34mINFO[m] -------------------------------------------------------
#14 301.4 [[1;34mINFO[m] T E S T S
#14 301.4 [[1;34mINFO[m] -------------------------------------------------------
#14 301.5 [[1;34mINFO[m] Running [1mTestSuite[m
#14 303.1 Warning: Data has too many channels for Colorized color mode
#14 303.1 Warning: Data has too many channels for Colorized color mode
#14 303.1 Warning: Data has too many channels for Colorized color mode
#14 303.2 Warning: Data has too many channels for Colorized color mode
#14 303.3 Warning: Data has too many channels for Colorized color mode
#14 303.3 Warning: Data has too many channels for Colorized color mode
#14 303.3 Warning: Data has too many channels for Colorized color mode
#14 303.4 Warning: Data has too many channels for Colorized color mode
#14 303.4 Warning: Data has too many channels for Composite color mode
#14 303.4 Warning: Data has too many channels for Composite color mode
#14 303.7 Warning: Data has too many channels for Composite color mode
#14 303.7 Warning: Data has too many channels for Composite color mode
#14 303.7 Warning: Data has too many channels for Composite color mode
#14 303.7 Warning: Data has too many channels for Composite color mode
#14 303.8 Warning: Data has too many channels for Composite color mode
#14 303.8 Warning: Data has too many channels for Composite color mode
#14 303.8 Warning: Data has too many channels for Composite color mode
#14 303.8 Warning: Data has too many channels for Composite color mode
#14 303.8 Warning: Data has too many channels for Composite color mode
#14 303.8 Warning: Data has too many channels for Composite color mode
#14 303.8 Warning: Data has too many channels for Composite color mode
#14 303.8 Warning: Data has too many channels for Composite color mode
#14 303.8 Warning: Data has too many channels for Composite color mode
#14 303.8 Warning: Data has too many channels for Composite color mode
#14 303.8 Warning: Data has too many channels for Composite color mode
#14 303.8 Warning: Data has too many channels for Composite color mode
#14 304.1 Warning: Data has too many channels for Composite color mode
#14 304.1 Warning: Data has too many channels for Composite color mode
#14 304.1 Warning: Data has too many channels for Composite color mode
#14 304.2 Warning: Data has too many channels for Composite color mode
#14 304.2 Warning: Data has too many channels for Composite color mode
#14 304.2 Warning: Data has too many channels for Composite color mode
#14 304.2 Warning: Data has too many channels for Composite color mode
#14 304.2 Warning: Data has too many channels for Composite color mode
#14 304.2 Warning: Data has too many channels for Composite color mode
#14 304.2 Warning: Data has too many channels for Composite color mode
#14 304.2 Warning: Data has too many channels for Composite color mode
#14 304.2 Warning: Data has too many channels for Composite color mode
#14 304.2 Warning: Data has too many channels for Composite color mode
#14 304.2 Warning: Data has too many channels for Composite color mode
#14 304.2 Warning: Data has too many channels for Composite color mode
#14 304.3 Warning: Data has too many channels for Composite color mode
#14 304.3 Warning: Data has too many channels for Composite color mode
#14 304.3 Warning: Data has too many channels for Composite color mode
#14 304.6 Warning: Data has too many channels for Composite color mode
#14 304.6 Warning: Data has too many channels for Composite color mode
#14 304.6 Warning: Data has too many channels for Composite color mode
#14 304.6 Warning: Data has too many channels for Composite color mode
#14 304.6 Warning: Data has too many channels for Composite color mode
#14 304.6 Warning: Data has too many channels for Composite color mode
#14 304.7 Warning: Data has too many channels for Composite color mode
#14 304.7 Warning: Data has too many channels for Composite color mode
#14 304.7 Warning: Data has too many channels for Composite color mode
#14 304.7 Warning: Data has too many channels for Composite color mode
#14 304.7 Warning: Data has too many channels for Composite color mode
#14 304.7 Warning: Data has too many channels for Composite color mode
#14 304.7 Warning: Data has too many channels for Composite color mode
#14 304.7 Warning: Data has too many channels for Composite color mode
#14 304.7 Warning: Data has too many channels for Composite color mode
#14 304.7 Warning: Data has too many channels for Composite color mode
#14 305.1 Warning: Data has too many channels for Composite color mode
#14 305.1 Warning: Data has too many channels for Composite color mode
#14 305.1 Warning: Data has too many channels for Composite color mode
#14 305.1 Warning: Data has too many channels for Composite color mode
#14 305.1 Warning: Data has too many channels for Composite color mode
#14 305.1 Warning: Data has too many channels for Composite color mode
#14 305.1 Warning: Data has too many channels for Composite color mode
#14 305.1 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.2 Warning: Data has too many channels for Composite color mode
#14 305.3 Warning: Data has too many channels for Custom color mode
#14 305.3 Warning: Data has too many channels for Custom color mode
#14 305.3 Warning: Data has too many channels for Custom color mode
#14 305.3 Warning: Data has too many channels for Custom color mode
#14 305.3 Warning: Data has too many channels for Custom color mode
#14 305.4 Warning: Data has too many channels for Custom color mode
#14 305.4 Warning: Data has too many channels for Custom color mode
#14 305.4 Warning: Data has too many channels for Custom color mode
#14 305.4 Warning: Data has too many channels for Default color mode
#14 305.5 Warning: Data has too many channels for Default color mode
#14 305.5 Warning: Data has too many channels for Default color mode
#14 305.5 Warning: Data has too many channels for Default color mode
#14 305.5 Warning: Data has too many channels for Default color mode
#14 305.5 Warning: Data has too many channels for Default color mode
#14 305.6 Warning: Data has too many channels for Default color mode
#14 305.6 Warning: Data has too many channels for Default color mode
#14 305.6 Warning: Data has too many channels for Default color mode
#14 305.6 Warning: Data has too many channels for Default color mode
#14 305.6 Warning: Data has too many channels for Default color mode
#14 305.7 Warning: Data has too many channels for Default color mode
#14 305.7 Warning: Data has too many channels for Default color mode
#14 305.7 Warning: Data has too many channels for Default color mode
#14 305.7 Warning: Data has too many channels for Default color mode
#14 305.8 Warning: Data has too many channels for Default color mode
#14 305.8 Warning: Data has too many channels for Grayscale color mode
#14 305.8 Warning: Data has too many channels for Grayscale color mode
#14 305.8 Warning: Data has too many channels for Grayscale color mode
#14 305.9 Warning: Data has too many channels for Grayscale color mode
#14 305.9 Warning: Data has too many channels for Grayscale color mode
#14 305.9 Warning: Data has too many channels for Grayscale color mode
#14 305.9 Warning: Data has too many channels for Grayscale color mode
#14 305.9 Warning: Data has too many channels for Grayscale color mode
#14 306.0 Warning: Data has too many channels for Colorized color mode
#14 306.0 Warning: Data has too many channels for Colorized color mode
#14 306.0 Warning: Data has too many channels for Colorized color mode
#14 306.6 Warning: Data has too many channels for Default color mode
#14 306.8 [[1;34mINFO[m] [1;32mTests run: [0;1;32m30[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.278 s - in [1mTestSuite[m
#14 307.1 [[1;34mINFO[m]
#14 307.1 [[1;34mINFO[m] Results:
#14 307.1 [[1;34mINFO[m]
#14 307.1 [[1;34mINFO[m] [1;32mTests run: 30, Failures: 0, Errors: 0, Skipped: 0[m
#14 307.1 [[1;34mINFO[m]
#14 307.1 [[1;34mINFO[m]
#14 307.1 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 307.2 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#14 307.2 [[1;34mINFO[m]
#14 307.2 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m >>>[m
#14 307.2 [[1;34mINFO[m]
#14 307.2 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 307.2 [[1;34mINFO[m]
#14 307.2 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 307.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 307.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 307.2 [[1;34mINFO[m] Storing buildNumber: b6bcc2e2a66fe40dd1f14d8b45e5742b2b1b9748 at timestamp: 1733357876244
#14 307.2 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 307.2 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 307.2
#14 307.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 307.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 307.2 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 307.2 [[1;34mINFO[m]
#14 307.2 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m <<<[m
#14 307.2 [[1;34mINFO[m]
#14 307.2 [[1;34mINFO[m]
#14 307.2 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 307.2 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar
#14 307.2 [[1;34mINFO[m]
#14 307.2 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 307.2 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar
#14 307.2 [[1;34mINFO[m]
#14 307.2 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 307.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#14 307.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#14 307.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar
#14 307.2 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar
#14 307.2 [[1;34mINFO[m]
#14 307.2 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bio-formats-tools[0;1m >------------------------[m
#14 307.2 [[1;34mINFO[m] [1mBuilding Bio-Formats command line tools 8.1.0-SNAPSHOT [18/24][m
#14 307.2 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 307.2 [[1;34mINFO[m]
#14 307.2 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats-tools[0;1m ---[m
#14 307.2 [[1;34mINFO[m]
#14 307.2 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 307.2 [[1;34mINFO[m]
#14 307.2 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 307.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 307.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 307.3 [[1;34mINFO[m] Storing buildNumber: b6bcc2e2a66fe40dd1f14d8b45e5742b2b1b9748 at timestamp: 1733357876318
#14 307.3 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 307.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 307.3
#14 307.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 307.3 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 307.3 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 307.3 [[1;34mINFO[m]
#14 307.3 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 307.3 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 307.3 [[1;34mINFO[m] Copying 0 resource
#14 307.3 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-tools/lib
#14 307.3 [[1;34mINFO[m] Copying 0 resource
#14 307.3 [[1;34mINFO[m] Copying 0 resource
#14 307.3 [[1;34mINFO[m]
#14 307.3 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 307.3 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 307.3 [[1;34mINFO[m] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/target/classes
#14 307.4 [[1;34mINFO[m]
#14 307.4 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 307.4 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 307.4 [[1;34mINFO[m] Copying 1 resource
#14 307.4 [[1;34mINFO[m]
#14 307.4 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 307.4 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 307.4 [[1;34mINFO[m] Compiling 1 source file to /bio-formats-build/bioformats/components/bio-formats-tools/target/test-classes
#14 307.5 [[1;34mINFO[m]
#14 307.5 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats-tools[0;1m ---[m
#14 307.5 [[1;34mINFO[m]
#14 307.5 [[1;34mINFO[m] -------------------------------------------------------
#14 307.6 [[1;34mINFO[m] T E S T S
#14 307.6 [[1;34mINFO[m] -------------------------------------------------------
#14 307.7 [[1;34mINFO[m] Running loci.formats.tools.[1mImageConverterTest[m
#14 375.9 [[1;34mINFO[m] [1;32mTests run: [0;1;32m55[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 68.135 s - in loci.formats.tools.[1mImageConverterTest[m
#14 376.2 [[1;34mINFO[m]
#14 376.2 [[1;34mINFO[m] Results:
#14 376.2 [[1;34mINFO[m]
#14 376.2 [[1;34mINFO[m] [1;32mTests run: 55, Failures: 0, Errors: 0, Skipped: 0[m
#14 376.2 [[1;34mINFO[m]
#14 376.2 [[1;34mINFO[m]
#14 376.2 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats-tools[0;1m ---[m
#14 376.2 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT.jar
#14 376.2 [[1;34mINFO[m]
#14 376.2 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m >>>[m
#14 376.2 [[1;34mINFO[m]
#14 376.2 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 376.2 [[1;34mINFO[m]
#14 376.2 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 376.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 376.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 376.2 [[1;34mINFO[m] Storing buildNumber: b6bcc2e2a66fe40dd1f14d8b45e5742b2b1b9748 at timestamp: 1733357945300
#14 376.2 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 376.2 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 376.2
#14 376.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 376.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 376.2 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 376.2 [[1;34mINFO[m]
#14 376.2 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m <<<[m
#14 376.2 [[1;34mINFO[m]
#14 376.2 [[1;34mINFO[m]
#14 376.2 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 376.2 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar
#14 376.3 [[1;34mINFO[m]
#14 376.3 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 376.3 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-tests.jar
#14 376.3 [[1;34mINFO[m]
#14 376.3 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats-tools[0;1m ---[m
#14 376.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#14 376.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#14 376.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar
#14 376.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT-tests.jar
#14 376.3 [[1;34mINFO[m]
#14 376.3 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bioformats_package[0;1m >-----------------------[m
#14 376.3 [[1;34mINFO[m] [1mBuilding bioformats_package bundle 8.1.0-SNAPSHOT [19/24][m
#14 376.3 [[1;34mINFO[m] [1m--------------------------------[ pom ]---------------------------------[m
#14 376.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-assembly-plugin/3.1.0/maven-assembly-plugin-3.1.0.pom
#14 376.3 Progress (1): 4.1/16 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-assembly-plugin/3.1.0/maven-assembly-plugin-3.1.0.pom (16 kB at 554 kB/s)
#14 376.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-assembly-plugin/3.1.0/maven-assembly-plugin-3.1.0.jar
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#14 376.3 [[1;34mINFO[m]
#14 376.3 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbioformats_package[0;1m ---[m
#14 376.3 [[1;34mINFO[m]
#14 376.3 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbioformats_package[0;1m ---[m
#14 376.3 [[1;34mINFO[m]
#14 376.3 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 376.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 376.3 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 376.3 [[1;34mINFO[m] Storing buildNumber: b6bcc2e2a66fe40dd1f14d8b45e5742b2b1b9748 at timestamp: 1733357945410
#14 376.3 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 376.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 376.3
#14 376.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 376.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 376.4 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 376.4 [[1;34mINFO[m]
#14 376.4 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbioformats_package[0;1m >>>[m
#14 376.4 [[1;34mINFO[m]
#14 376.4 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbioformats_package[0;1m ---[m
#14 376.4 [[1;34mINFO[m]
#14 376.4 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 376.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 376.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 376.4 [[1;34mINFO[m] Storing buildNumber: b6bcc2e2a66fe40dd1f14d8b45e5742b2b1b9748 at timestamp: 1733357945427
#14 376.4 [[1;33mWARNING[m] Cannot get the branch informat
#14 376.4 [output clipped, log limit 2MiB reached]
#14 488.8 SLF4J: No SLF4J providers were found.
#14 488.8 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 488.8 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 489.7 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#14 489.7 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#14 489.7 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#14 489.7 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#14 DONE 499.9s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.750 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.889 [echo] isSnapshot = true
#16 2.004
#16 2.004 copy-jars:
#16 2.004
#16 2.004 deps-formats-api:
#16 2.091 [echo] isSnapshot = true
#16 2.146
#16 2.146 install-pom:
#16 2.332 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 2.390 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 2.394 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 2.395
#16 2.395 jar-formats-api:
#16 2.507 [echo] isSnapshot = true
#16 2.687
#16 2.687 init-title:
#16 2.687 [echo] ----------=========== formats-api ===========----------
#16 2.687
#16 2.687 init-timestamp:
#16 2.694
#16 2.694 init:
#16 2.694
#16 2.694 copy-resources:
#16 2.695 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.708 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.710
#16 2.710 compile:
#16 2.893 [resolver:resolve] Resolving artifacts
#16 2.919 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.149 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 3.149 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 3.149 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 3.149 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 3.850 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.850 [javac] import loci.common.ReflectedUniverse;
#16 3.850 [javac] ^
#16 4.150 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.151 [javac] int currentIndex = r.getCoreIndex();
#16 4.151 [javac] ^
#16 4.151 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.151 [javac] r.setCoreIndex(coreIndex);
#16 4.151 [javac] ^
#16 4.151 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.151 [javac] r.setCoreIndex(currentIndex);
#16 4.151 [javac] ^
#16 4.251 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.251 [javac] public void setCoreIndex(int no) {
#16 4.251 [javac] ^
#16 4.251 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.251 [javac] public int getCoreIndex() {
#16 4.251 [javac] ^
#16 4.252 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.252 [javac] public int coreIndexToSeries(int index)
#16 4.252 [javac] ^
#16 4.252 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.252 [javac] public int seriesToCoreIndex(int series)
#16 4.252 [javac] ^
#16 4.252 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.252 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.252 [javac] ^
#16 4.353 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.353 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 4.353 [javac] ^
#16 4.353 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.353 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 4.353 [javac] ^
#16 4.353 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.353 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 4.353 [javac] ^
#16 4.353 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.353 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 4.353 [javac] ^
#16 4.453 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#16 4.453 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#16 4.454 [javac] ^
#16 4.454 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.454 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.454 [javac] ^
#16 4.454 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.454 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 4.454 [javac] ^
#16 4.554 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.554 [javac] public void setCoreIndex(int no) {
#16 4.554 [javac] ^
#16 4.554 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.555 [javac] public int getCoreIndex() {
#16 4.555 [javac] ^
#16 4.555 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.555 [javac] public int coreIndexToSeries(int index) {
#16 4.555 [javac] ^
#16 4.555 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.555 [javac] public int seriesToCoreIndex(int series) {
#16 4.555 [javac] ^
#16 4.555 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.555 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.555 [javac] ^
#16 4.555 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.555 [javac] return getReader().getCoreMetadataList();
#16 4.555 [javac] ^
#16 4.555 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.555 [javac] return getReader().getCoreIndex();
#16 4.555 [javac] ^
#16 4.555 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.555 [javac] getReader().setCoreIndex(no);
#16 4.556 [javac] ^
#16 4.556 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.556 [javac] return getReader().seriesToCoreIndex(series);
#16 4.556 [javac] ^
#16 4.556 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.556 [javac] return getReader().coreIndexToSeries(index);
#16 4.556 [javac] ^
#16 4.656 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.656 [javac] public void setCoreIndex(int no) {
#16 4.656 [javac] ^
#16 4.656 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.656 [javac] public int getCoreIndex() {
#16 4.656 [javac] ^
#16 4.656 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.656 [javac] public int coreIndexToSeries(int index) {
#16 4.656 [javac] ^
#16 4.657 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.657 [javac] public int seriesToCoreIndex(int series) {
#16 4.657 [javac] ^
#16 4.657 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.657 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 4.657 [javac] ^
#16 4.657 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 4.657 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 4.657 [javac] ^
#16 4.657 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.657 [javac] return reader.getCoreIndex();
#16 4.657 [javac] ^
#16 4.657 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.657 [javac] reader.setCoreIndex(no);
#16 4.657 [javac] ^
#16 4.657 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 4.657 [javac] return reader.seriesToCoreIndex(series);
#16 4.657 [javac] ^
#16 4.657 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 4.657 [javac] return reader.coreIndexToSeries(index);
#16 4.657 [javac] ^
#16 4.858 [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.858 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.858 [javac] 40 warnings
#16 4.859
#16 4.859 formats-api.jar:
#16 4.859 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.884 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.918 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 4.922 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 4.924 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 4.925 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 4.928 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.928
#16 4.928 deps-turbojpeg:
#16 4.928
#16 4.928 jar-turbojpeg:
#16 5.029 [echo] isSnapshot = true
#16 5.170
#16 5.170 init-title:
#16 5.170 [echo] ----------=========== turbojpeg ===========----------
#16 5.170
#16 5.170 init-timestamp:
#16 5.171
#16 5.171 init:
#16 5.171
#16 5.171 copy-resources:
#16 5.171 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.172
#16 5.172 compile:
#16 5.182 [resolver:resolve] Resolving artifacts
#16 5.192 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.395 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.395 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 5.395 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 5.395 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 6.096 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 6.096 [javac] protected void finalize() throws Throwable {
#16 6.096 [javac] ^
#16 6.096 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 6.096 [javac] super.finalize();
#16 6.096 [javac] ^
#16 6.151 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 6.151 [javac] protected void finalize() throws Throwable {
#16 6.151 [javac] ^
#16 6.151 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#16 6.151 [javac] super.finalize();
#16 6.151 [javac] ^
#16 6.152 [javac] 8 warnings
#16 6.152
#16 6.152 jar:
#16 6.156 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.342 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 6.349 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 6.404 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 6.406 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 6.410 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.411
#16 6.411 deps-formats-bsd:
#16 6.411
#16 6.411 jar-formats-bsd:
#16 6.525 [echo] isSnapshot = true
#16 6.669
#16 6.669 init-title:
#16 6.669 [echo] ----------=========== formats-bsd ===========----------
#16 6.669
#16 6.669 init-timestamp:
#16 6.669
#16 6.669 init:
#16 6.669
#16 6.669 copy-resources:
#16 6.670 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.673 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.674
#16 6.674 compile:
#16 6.893 [resolver:resolve] Resolving artifacts
#16 6.922 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.131 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.131 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 7.131 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 7.131 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 8.232 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.232 [javac] import loci.common.ReflectedUniverse;
#16 8.232 [javac] ^
#16 8.733 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.733 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.733 [javac] ^
#16 8.733 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.733 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.733 [javac] ^
#16 8.733 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.733 [javac] int n = reader.getCoreMetadataList().size();
#16 8.733 [javac] ^
#16 8.734 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.734 [javac] reader.setCoreIndex(coreIndex);
#16 8.734 [javac] ^
#16 8.734 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.734 [javac] int n = reader.getCoreMetadataList().size();
#16 8.734 [javac] ^
#16 8.734 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.734 [javac] int n = reader.getCoreMetadataList().size();
#16 8.734 [javac] ^
#16 8.734 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.734 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.734 [javac] ^
#16 8.734 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.734 [javac] int n = reader.getCoreMetadataList().size();
#16 8.734 [javac] ^
#16 8.734 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.734 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.734 [javac] ^
#16 8.734 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.734 [javac] int n = reader.getCoreMetadataList().size();
#16 8.734 [javac] ^
#16 8.734 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.734 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.734 [javac] ^
#16 8.734 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.734 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.734 [javac] ^
#16 8.734 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.734 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.734 [javac] ^
#16 8.734 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.734 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.734 [javac] ^
#16 8.734 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.734 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.734 [javac] ^
#16 8.734 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.735 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.735 [javac] ^
#16 8.735 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.735 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.735 [javac] ^
#16 8.735 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.735 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.735 [javac] ^
#16 8.735 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.735 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.735 [javac] ^
#16 8.935 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.935 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.935 [javac] ^
#16 8.935 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#16 8.935 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#16 8.935 [javac] ^
#16 8.935 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#16 8.935 [javac] URL url = new URL(urlPath);
#16 8.935 [javac] ^
#16 9.036 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.036 [javac] BitWriter out = new BitWriter();
#16 9.036 [javac] ^
#16 9.036 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.036 [javac] BitWriter out = new BitWriter();
#16 9.036 [javac] ^
#16 9.136 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.136 [javac] return new Double(v);
#16 9.136 [javac] ^
#16 9.737 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.737 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 9.737 [javac] ^
#16 9.737 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 9.737 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 9.737 [javac] ^
#16 9.737 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.737 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 9.737 [javac] ^
#16 9.837 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.837 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 9.837 [javac] ^
#16 10.04 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.04 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 10.04 [javac] ^
#16 10.14 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 10.14 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 10.14 [javac] ^
#16 10.24 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.24 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 10.24 [javac] ^
#16 10.24 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.24 [javac] protected ReflectedUniverse r;
#16 10.24 [javac] ^
#16 10.24 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.24 [javac] r = new ReflectedUniverse();
#16 10.24 [javac] ^
#16 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 10.34 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 10.34 [javac] ^
#16 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 10.34 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 10.34 [javac] ^
#16 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 10.34 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 10.34 [javac] ^
#16 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 10.34 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 10.34 [javac] ^
#16 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 10.34 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 10.34 [javac] ^
#16 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 10.34 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 10.34 [javac] ^
#16 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 10.34 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 10.34 [javac] ^
#16 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 10.34 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 10.34 [javac] ^
#16 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 10.34 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 10.34 [javac] ^
#16 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 10.34 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 10.34 [javac] ^
#16 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 10.34 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 10.34 [javac] ^
#16 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 10.34 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 10.34 [javac] ^
#16 10.34 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 10.34 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 10.34 [javac] ^
#16 10.44 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.44 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.44 [javac] ^
#16 10.44 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.44 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 10.44 [javac] ^
#16 10.44 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 10.44 [javac] result[i] = new Double(readNumber().doubleValue());
#16 10.44 [javac] ^
#16 10.50 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.50 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.50 [javac] 55 warnings
#16 10.50
#16 10.50 formats-bsd.jar:
#16 10.51 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.62 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 10.62 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 10.62 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 10.63 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 10.63 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.63
#16 10.63 deps-formats-gpl:
#16 10.63
#16 10.63 jar-formats-gpl:
#16 10.72 [echo] isSnapshot = true
#16 10.87
#16 10.87 init-title:
#16 10.87 [echo] ----------=========== formats-gpl ===========----------
#16 10.87
#16 10.87 init-timestamp:
#16 10.87
#16 10.87 init:
#16 10.87
#16 10.87 copy-resources:
#16 10.87 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.87 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.87
#16 10.87 compile:
#16 11.25 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.57 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 11.60 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.60 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 11.62 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 11.62 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.64 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.65 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 11.66 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 11.71 [resolver:resolve] Resolving artifacts
#16 11.72 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 11.72 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 11.76 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 11.76 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 11.77 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 11.77 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 11.79 [javac] Compiling 174 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.10 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 12.10 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 12.10 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 12.10 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 13.40 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.40 [javac] import loci.formats.codec.BitWriter;
#16 13.40 [javac] ^
#16 13.40 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.40 [javac] import loci.formats.codec.BitWriter;
#16 13.40 [javac] ^
#16 15.50 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 15.50 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 15.50 [javac] ^
#16 15.50 [javac] cast to Object for a varargs call
#16 15.50 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 15.60 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.60 [javac] BitWriter bits = null;
#16 15.60 [javac] ^
#16 15.60 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.60 [javac] bits = new BitWriter(planes[index].length / 8);
#16 15.60 [javac] ^
#16 16.00 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 16.00 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 16.00 [javac] ^
#16 16.50 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.50 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.50 [javac] ^
#16 16.50 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.50 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.50 [javac] ^
#16 16.80 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 16.80 [javac] Variable variable = group.findVariable(variableName);
#16 16.80 [javac] ^
#16 16.80 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 16.80 [javac] Variable variable = group.findVariable(variableName);
#16 16.80 [javac] ^
#16 16.80 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 16.80 [javac] List<Attribute> attributes = variable.getAttributes();
#16 16.80 [javac] ^
#16 16.80 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.80 [javac] String groupName = group.getName();
#16 16.80 [javac] ^
#16 16.80 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 16.80 [javac] List<Attribute> attributes = group.getAttributes();
#16 16.80 [javac] ^
#16 16.80 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.80 [javac] String variableName = variable.getName();
#16 16.80 [javac] ^
#16 16.80 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 16.80 [javac] Group nextParent = parent.findGroup(token);
#16 16.80 [javac] ^
#16 16.80 [javac] Note: Some input files use unchecked or unsafe operations.
#16 16.80 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.80 [javac] 19 warnings
#16 16.83
#16 16.83 formats-gpl.jar:
#16 16.84 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 16.99 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 17.00 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 17.00 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 17.00 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 17.01 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 17.01
#16 17.01 deps-bio-formats-plugins:
#16 17.01
#16 17.01 jar-bio-formats-plugins:
#16 17.11 [echo] isSnapshot = true
#16 17.24
#16 17.24 init-title:
#16 17.24 [echo] ----------=========== bio-formats_plugins ===========----------
#16 17.24
#16 17.24 init-timestamp:
#16 17.24
#16 17.24 init:
#16 17.24
#16 17.24 copy-resources:
#16 17.24 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.25 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.25
#16 17.25 compile:
#16 17.50 [resolver:resolve] Resolving artifacts
#16 17.52 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.73 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 17.73 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 17.73 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 17.73 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 18.63 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.63 [javac] import loci.common.ReflectedUniverse;
#16 18.63 [javac] ^
#16 18.63 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.63 [javac] import loci.common.ReflectedUniverse;
#16 18.63 [javac] ^
#16 19.03 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 19.03 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 19.03 [javac] ^
#16 19.13 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#16 19.13 [javac] URL url = new URL(urlPath);
#16 19.13 [javac] ^
#16 19.23 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.23 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.23 [javac] ^
#16 19.23 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.23 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 19.23 [javac] ^
#16 19.33 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.33 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 19.33 [javac] ^
#16 19.33 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.33 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 19.33 [javac] ^
#16 19.53 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#16 19.53 [javac] url = new URL(path);
#16 19.53 [javac] ^
#16 19.73 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 19.73 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 19.73 [javac] 13 warnings
#16 19.79
#16 19.79 bio-formats-plugins.jar:
#16 19.80 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 19.83 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 19.83 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 19.83 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 19.83 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 19.83 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 19.84
#16 19.84 deps-bio-formats-tools:
#16 19.84
#16 19.84 jar-bio-formats-tools:
#16 19.92 [echo] isSnapshot = true
#16 20.06
#16 20.06 init-title:
#16 20.06 [echo] ----------=========== bio-formats-tools ===========----------
#16 20.06
#16 20.06 init-timestamp:
#16 20.06
#16 20.06 init:
#16 20.06
#16 20.06 copy-resources:
#16 20.06 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.06
#16 20.06 compile:
#16 20.33 [resolver:resolve] Resolving artifacts
#16 20.34 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.54 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 20.54 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 20.54 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 20.54 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 21.69 [javac] 4 warnings
#16 21.69
#16 21.69 bio-formats-tools.jar:
#16 21.69 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 21.70 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 21.70 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 21.70 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 21.70 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 21.71 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 21.71
#16 21.71 deps-tests:
#16 21.71
#16 21.71 jar-tests:
#16 21.79 [echo] isSnapshot = true
#16 21.92
#16 21.92 init-title:
#16 21.92 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 21.92
#16 21.92 init-timestamp:
#16 21.92
#16 21.92 init:
#16 21.92
#16 21.92 copy-resources:
#16 21.92 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.92
#16 21.92 compile:
#16 22.21 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.28 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.29 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 22.71 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 23.19 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 23.20 [resolver:resolve] Resolving artifacts
#16 23.21 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.25 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.26 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 23.65 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 24.01 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 24.02 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 24.22 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 24.22 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#16 24.22 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#16 24.22 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#16 25.23 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.23 [javac] int index = unflattenedReader.getCoreIndex();
#16 25.23 [javac] ^
#16 25.23 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 25.23 [javac] reader.setCoreIndex(index);
#16 25.23 [javac] ^
#16 25.53 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2259: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.53 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 25.53 [javac] ^
#16 25.53 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2425: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 25.53 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 25.53 [javac] ^
#16 25.83 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.83 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 25.83 [javac] ^
#16 25.83 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 25.83 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 25.83 [javac] ^
#16 25.87 [javac] Note: Some input files use unchecked or unsafe operations.
#16 25.87 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 25.87 [javac] 10 warnings
#16 25.87
#16 25.87 tests.jar:
#16 25.87 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 25.88 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 25.89 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 25.89 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 25.89 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.89 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 25.89
#16 25.89 jars:
#16 25.89
#16 25.89 copy-jars:
#16 25.89
#16 25.89 deps-formats-api:
#16 25.94 [echo] isSnapshot = true
#16 25.98
#16 25.98 install-pom:
#16 26.13 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 26.14 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.14 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 26.14
#16 26.14 jar-formats-api:
#16 26.22 [echo] isSnapshot = true
#16 26.35
#16 26.35 init-title:
#16 26.35 [echo] ----------=========== formats-api ===========----------
#16 26.35
#16 26.35 init-timestamp:
#16 26.35
#16 26.35 init:
#16 26.35
#16 26.35 copy-resources:
#16 26.35
#16 26.35 compile:
#16 26.48 [resolver:resolve] Resolving artifacts
#16 26.49
#16 26.49 formats-api.jar:
#16 26.50 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 26.51 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 26.51 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 26.51 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.51 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 26.51
#16 26.51 deps-turbojpeg:
#16 26.51
#16 26.51 jar-turbojpeg:
#16 26.60 [echo] isSnapshot = true
#16 26.72
#16 26.72 init-title:
#16 26.72 [echo] ----------=========== turbojpeg ===========----------
#16 26.72
#16 26.72 init-timestamp:
#16 26.72
#16 26.72 init:
#16 26.72
#16 26.72 copy-resources:
#16 26.73
#16 26.73 compile:
#16 26.73 [resolver:resolve] Resolving artifacts
#16 26.74
#16 26.74 jar:
#16 26.74 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 26.75 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 26.75 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 26.75 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.75 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 26.75
#16 26.75 deps-formats-bsd:
#16 26.75
#16 26.75 jar-formats-bsd:
#16 26.84 [echo] isSnapshot = true
#16 26.96
#16 26.96 init-title:
#16 26.96 [echo] ----------=========== formats-bsd ===========----------
#16 26.96
#16 26.96 init-timestamp:
#16 26.96
#16 26.96 init:
#16 26.96
#16 26.96 copy-resources:
#16 26.96
#16 26.96 compile:
#16 27.15 [resolver:resolve] Resolving artifacts
#16 27.17
#16 27.17 formats-bsd.jar:
#16 27.20 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 27.20 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 27.21 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 27.21 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.21 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 27.21
#16 27.21 deps-formats-gpl:
#16 27.21
#16 27.21 jar-formats-gpl:
#16 27.29 [echo] isSnapshot = true
#16 27.42
#16 27.42 init-title:
#16 27.42 [echo] ----------=========== formats-gpl ===========----------
#16 27.42
#16 27.42 init-timestamp:
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#16 27.42
#16 27.42 compile:
#16 27.65 [resolver:resolve] Resolving artifacts
#16 27.66
#16 27.66 formats-gpl.jar:
#16 27.70 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 27.70 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 27.70 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 27.70 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.71 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 27.71
#16 27.71 deps-bio-formats-plugins:
#16 27.71
#16 27.71 jar-bio-formats-plugins:
#16 27.79 [echo] isSnapshot = true
#16 27.91
#16 27.91 init-title:
#16 27.91 [echo] ----------=========== bio-formats_plugins ===========----------
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#16 27.92 compile:
#16 28.18 [resolver:resolve] Resolving artifacts
#16 28.20
#16 28.20 bio-formats-plugins.jar:
#16 28.22 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 28.22 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 28.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 28.23 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 28.23 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 28.23
#16 28.23 deps-bio-formats-tools:
#16 28.23
#16 28.23 jar-bio-formats-tools:
#16 28.32 [echo] isSnapshot = true
#16 28.46
#16 28.46 init-title:
#16 28.46 [echo] ----------=========== bio-formats-tools ===========----------
#16 28.46
#16 28.46 init-timestamp:
#16 28.46
#16 28.46 init:
#16 28.46
#16 28.46 copy-resources:
#16 28.46
#16 28.46 compile:
#16 28.72 [resolver:resolve] Resolving artifacts
#16 28.73
#16 28.73 bio-formats-tools.jar:
#16 28.73 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 28.74 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 28.74 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 28.74 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 28.74 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 28.74
#16 28.74 deps-tests:
#16 28.74
#16 28.74 jar-tests:
#16 28.83 [echo] isSnapshot = true
#16 29.02
#16 29.02 init-title:
#16 29.02 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 29.02
#16 29.02 init-timestamp:
#16 29.02
#16 29.02 init:
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#16 29.02 copy-resources:
#16 29.02
#16 29.02 compile:
#16 29.27 [resolver:resolve] Resolving artifacts
#16 29.28
#16 29.28 tests.jar:
#16 29.29 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 29.29 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 29.29 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 29.30 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 29.30 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 29.30
#16 29.30 jars:
#16 29.30
#16 29.30 tools:
#16 29.30 [echo] ----------=========== bioformats_package ===========----------
#16 29.38 [echo] isSnapshot = true
#16 29.51
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#16 29.51
#16 29.51 bundle:
#16 29.74 [resolver:resolve] Resolving artifacts
#16 29.75 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.78 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.25-SNAPSHOT/ome-common-6.0.25-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.81 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.83 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.84 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.90 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.92 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.97 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.98 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.21 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.26 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.28 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.34 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.34 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.36 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.36 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.53 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.04 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.04 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.04 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.05 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.14 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.15 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.15 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.21 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.27 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.28 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.1-SNAPSHOT/ome-codecs-1.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.29 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.44 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.51 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.55 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.55 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.59 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.61 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.06 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.08 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.11 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.18 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.29 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.31 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.32 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 32.58 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.65 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.71 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.81 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 34.38 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.49 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.95 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 40.71 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 41.31 [resolver:install] Using default POM (ome:bioformats_package:8.1.0-SNAPSHOT)
#16 41.32 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.pom
#16 41.32 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.jar
#16 41.35 [resolver:install] Installing ome:bioformats_package:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 41.36 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 41.36
#16 41.36 BUILD SUCCESSFUL
#16 41.36 Total time: 40 seconds
#16 DONE 41.8s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.6s done
#18 writing image sha256:797ef12f032df5b6f7f144ac20e20d54b1249a3517429229cc202a7b3252e694 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.6s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS