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Started by upstream project "BIOFORMATS-test-repo" build number 318
originally caused by:
 Started by upstream project "Trigger" build number 341
 originally caused by:
  Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins13542240734479008050.sh
+ '[' gel = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_50512_merge_ci -v /uod/idr/repos/curated/gel:/data -v /uod/idr-scratch/merge-ci/curated/gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 13:29:53,397 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
   [testng] 13:29:53,398 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service.
   [testng] 13:29:53,398 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 13:29:53,399 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 13:29:53,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 13:29:53,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 13:29:53,400 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 13:29:53,400 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 13:29:53,401 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 13:29:53,402 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 13:29:53,402 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 13:29:53,402 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 13:29:53,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 13:29:53,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 13:29:53,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 13:29:53,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 13:29:53,588 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 13:29:53,588 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 13:29:53,588 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 13:29:53,588 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 13:29:53,589 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration.
   [testng] 13:29:53,590 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point
   [testng] 13:29:53,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-01-14 13:29:53,598] [main] java.version = 11.0.16
   [testng] 13:29:53,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 13:29:53,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:29:53,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-14_13-29-53.log]
   [testng] 13:29:53,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration.
   [testng] [2025-01-14 13:29:53,646] [main] testng.directory = /data
   [testng] [2025-01-14 13:29:53,646] [main] testng.configDirectory = /config
   [testng] [2025-01-14 13:29:53,655] [main] testng.multiplier = 1.0
   [testng] [2025-01-14 13:29:53,657] [main] testng.in-memory = false
   [testng] [2025-01-14 13:29:53,657] [main] testng.allow-missing = false
   [testng] [2025-01-14 13:29:53,657] [main] user.language = en
   [testng] [2025-01-14 13:29:53,657] [main] user.country = ${user.country}
   [testng] [2025-01-14 13:29:53,657] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2025-01-14 13:29:54,080] [main] ----------------------------------------
   [testng] [2025-01-14 13:29:54,080] [main] Total files: 4
   [testng] [2025-01-14 13:29:54,080] [main] Scan time: 0.423 s (105 ms/file)
   [testng] [2025-01-14 13:29:54,080] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 4 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-01-14 13:29:58,893] [pool-1-thread-1] Initializing /data/samples/c15e583199.gel: 
   [testng] 13:29:58,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 13:29:58,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:29:58,895 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-14_13-29-58.log]
   [testng] 13:29:58,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a746c17 - End of configuration.
   [testng] [2025-01-14 13:29:59,925] [pool-1-thread-4] Initializing /data/samples/ste572999b.gel: 
   [testng] 13:29:59,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 13:29:59,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:29:59,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-14_13-29-59.log]
   [testng] 13:29:59,926 |-INFO in ch.qos.logback.core.sift.SiftProcessor@672d1fb4 - End of configuration.
   [testng] [2025-01-14 13:30:00,909] [pool-1-thread-3] Initializing /data/glencoe/WanliMay4.gel: 
   [testng] 13:30:00,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 13:30:00,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:30:00,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-14_13-30-00.log]
   [testng] 13:30:00,911 |-INFO in ch.qos.logback.core.sift.SiftProcessor@171003fe - End of configuration.
   [testng] [2025-01-14 13:30:01,904] [pool-1-thread-2] Initializing /data/qa21519/20180413 Denaturing PAGE Nuf1_M & Nuf1_M_D173A cut double stranded DNA with Mn & Annealing buffer-[FAM].gel: 
   [testng] 13:30:01,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 13:30:01,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:30:01,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-14_13-30-01.log]
   [testng] 13:30:01,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d51cb2e - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 212, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 21 seconds
Finished: SUCCESS