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Started by upstream project "BIOFORMATS-test-repo" build number 318
originally caused by:
 Started by upstream project "Trigger" build number 341
 originally caused by:
  Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins7012398452267865347.sh
+ '[' obf = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_50520_merge_ci -v /uod/idr/repos/curated/obf:/data -v /uod/idr-scratch/merge-ci/curated/obf:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 13:47:42,410 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
   [testng] 13:47:42,412 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service.
   [testng] 13:47:42,412 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 13:47:42,413 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 13:47:42,413 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 13:47:42,413 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 13:47:42,414 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 13:47:42,414 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 13:47:42,414 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 13:47:42,415 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 13:47:42,415 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 13:47:42,415 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 13:47:42,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 13:47:42,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 13:47:42,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 13:47:42,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 13:47:42,598 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 13:47:42,599 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 13:47:42,599 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 13:47:42,599 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 13:47:42,599 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration.
   [testng] 13:47:42,600 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point
   [testng] 13:47:42,600 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-01-14 13:47:42,608] [main] java.version = 11.0.16
   [testng] 13:47:42,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 13:47:42,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:47:42,653 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-14_13-47-42.log]
   [testng] 13:47:42,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration.
   [testng] [2025-01-14 13:47:42,657] [main] testng.directory = /data
   [testng] [2025-01-14 13:47:42,657] [main] testng.configDirectory = /config
   [testng] [2025-01-14 13:47:42,666] [main] testng.multiplier = 1.0
   [testng] [2025-01-14 13:47:42,667] [main] testng.in-memory = false
   [testng] [2025-01-14 13:47:42,667] [main] testng.allow-missing = false
   [testng] [2025-01-14 13:47:42,667] [main] user.language = en
   [testng] [2025-01-14 13:47:42,667] [main] user.country = ${user.country}
   [testng] [2025-01-14 13:47:42,667] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2025-01-14 13:48:00,519] [main] ----------------------------------------
   [testng] [2025-01-14 13:48:00,520] [main] Total files: 12
   [testng] [2025-01-14 13:48:00,520] [main] Scan time: 17.851 s (1487 ms/file)
   [testng] [2025-01-14 13:48:00,520] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 11 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-01-14 13:48:23,250] [pool-1-thread-1] Initializing /data/tristan/Example_Chrimson_Beads_40nm.msr: 
   [testng] 13:48:23,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 13:48:23,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:48:23,254 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-14_13-48-23.log]
   [testng] 13:48:23,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14f3fc69 - End of configuration.
   [testng] [2025-01-14 13:48:24,722] [pool-1-thread-11] Initializing /data/public/ngladitz/v4/test-v4-uncompressed.obf: 
   [testng] 13:48:24,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 13:48:24,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:48:24,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-14_13-48-24.log]
   [testng] 13:48:24,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@340b503d - End of configuration.
   [testng] [2025-01-14 13:48:26,437] [pool-1-thread-10] Initializing /data/zoltan/3D-CONFOCAL-PSF-235nm.msr: 
   [testng] 13:48:26,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 13:48:26,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:48:26,438 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-14_13-48-26.log]
   [testng] 13:48:26,439 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b1bcc65 - End of configuration.
   [testng] [2025-01-14 13:48:27,962] [pool-1-thread-9] Initializing /data/qa-27923/test.obf: 
   [testng] 13:48:27,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 13:48:27,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:48:27,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-14_13-48-27.log]
   [testng] 13:48:27,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29f29a8b - End of configuration.
   [testng] [2025-01-14 13:48:29,487] [pool-1-thread-8] Initializing /data/public/ngladitz/v6/test-v6.obf: 
   [testng] 13:48:29,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 13:48:29,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:48:29,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-14_13-48-29.log]
   [testng] 13:48:29,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79ba84c4 - End of configuration.
   [testng] [2025-01-14 13:48:31,311] [pool-1-thread-7] Initializing /data/public/ngladitz/v6/test-v6-short-write.obf: 
   [testng] 13:48:31,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 13:48:31,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:48:31,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-14_13-48-31.log]
   [testng] 13:48:31,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b2082e - End of configuration.
   [testng] [2025-01-14 13:48:32,730] [pool-1-thread-6] Initializing /data/qa-17111/before 1.msr: 
   [testng] 13:48:32,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 13:48:32,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:48:32,731 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-14_13-48-32.log]
   [testng] 13:48:32,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62abd652 - End of configuration.
   [testng] [2025-01-14 13:48:35,057] [pool-1-thread-5] Initializing /data/public/ngladitz/v6/test-v6-uncompressed.obf: 
   [testng] 13:48:35,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 13:48:35,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:48:35,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-14_13-48-35.log]
   [testng] 13:48:35,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d90ff4d - End of configuration.
   [testng] [2025-01-14 13:48:37,191] [pool-1-thread-4] Initializing /data/public/ngladitz/v4/test-v4.obf: 
   [testng] 13:48:37,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 13:48:37,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:48:37,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-14_13-48-37.log]
   [testng] 13:48:37,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19feeea7 - End of configuration.
   [testng] [2025-01-14 13:48:38,730] [pool-1-thread-3] Initializing /data/qa-16895/Measurement1.msr: 
   [testng] 13:48:38,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 13:48:38,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:48:38,731 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-14_13-48-38.log]
   [testng] 13:48:38,732 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c553cde - End of configuration.
   [testng] [2025-01-14 13:48:40,217] [pool-1-thread-2] Initializing /data/bjoernthiel/20191106__zstack.msr: 
   [testng] 13:48:40,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 13:48:40,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 13:48:40,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-14_13-48-40.log]
   [testng] 13:48:40,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23759b37 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 583, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 1 minute 38 seconds
Finished: SUCCESS