08:54:36Started by upstream project "Trigger" build number 50508:54:36originally caused by:
08:54:36 Started by user devspace08:54:36 Restarted from build #504, stage OMERO Python
08:54:36Running as SYSTEM
08:54:36Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
08:54:36The recommended git tool is: NONE
08:54:36No credentials specified
08:54:36 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
08:54:36Fetching changes from the remote Git repository
08:54:36 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
08:54:36Fetching upstream changes from https://github.com/ome/openmicroscopy.git08:54:36 > git --version # timeout=10
08:54:36 > git --version # 'git version 2.43.5'
08:54:36 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
08:54:36 > git rev-parse origin/develop^{commit} # timeout=10
08:54:36Checking out Revision 27b69ac69788e990c72b3ee0d5ff896a123abf84 (origin/develop)
08:54:36 > git config core.sparsecheckout # timeout=10
08:54:36 > git checkout -f 27b69ac69788e990c72b3ee0d5ff896a123abf84 # timeout=30
08:54:36Commit message: "Merge pull request #6427 from dominikl/5_6_15_changelog_2"
08:54:36 > git rev-list --no-walk 27b69ac69788e990c72b3ee0d5ff896a123abf84 # timeout=10
08:54:36Cleaning workspace
08:54:36 > git rev-parse --verify HEAD # timeout=10
08:54:36Resetting working tree
08:54:36 > git reset --hard # timeout=10
08:54:36 > git clean -fdx # timeout=10
08:54:36Copied 1 artifact from "OMERO-python-superbuild-build" build number 42808:54:36[OMERO-push] $ /bin/bash -xe /tmp/jenkins11539903882007086295.sh
08:54:36+ python3.11 -mvenv venv
08:54:38+ source /home/omero/workspace/OMERO-push/venv/bin/activate
08:54:38++ deactivate nondestructive
08:54:38++ '[' -n '' ']'
08:54:38++ '[' -n '' ']'
08:54:38++ hash -r
08:54:38++ '[' -n '' ']'
08:54:38++ unset VIRTUAL_ENV
08:54:38++ unset VIRTUAL_ENV_PROMPT
08:54:38++ '[' '!' nondestructive = nondestructive ']'
08:54:38++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
08:54:38++ export VIRTUAL_ENV
08:54:38++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:54:38++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:54:38++ export PATH
08:54:38++ '[' -n '' ']'
08:54:38++ '[' -z '' ']'
08:54:38++ _OLD_VIRTUAL_PS1=
08:54:38++ PS1='(venv) '
08:54:38++ export PS1
08:54:38++ VIRTUAL_ENV_PROMPT='(venv) '
08:54:38++ export VIRTUAL_ENV_PROMPT
08:54:38++ hash -r
08:54:38+ pip install -U pip
08:54:38Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (25.1.1)
08:54:38+ pip install -U scc
08:54:39Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
08:54:39Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.6.1)
08:54:39Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.2)
08:54:39Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
08:54:39Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.18.10)
08:54:39Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
08:54:39Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
08:54:39Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
08:54:39Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
08:54:39Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.5.0)
08:54:39Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.32.3)
08:54:39Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.10.1)
08:54:39Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.13.0)
08:54:39Requirement already satisfied: Deprecated in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.2.18)
08:54:39Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (44.0.2)
08:54:39Requirement already satisfied: cffi>=1.12 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (1.17.1)
08:54:39Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=1.12->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.22)
08:54:39Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.1)
08:54:39Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.10)
08:54:39Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2025.1.31)
08:54:39Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib64/python3.11/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.17.2)
08:54:39Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib64/python3.11/site-packages (from ruamel.yaml->scc) (0.2.12)
08:54:39+ test -e src
08:54:39+ cd src
08:54:39++ git config github.user
08:54:39+ user=snoopycrimecop
08:54:39+ scc merge develop --no-ask --reset --shallow -S success-only
08:54:432025-06-04 08:54:43,192 [ scc.merge] INFO Merging Pull Request(s) based on develop
08:54:432025-06-04 08:54:43,192 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
08:54:432025-06-04 08:54:43,192 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
08:54:432025-06-04 08:54:43,192 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
08:54:432025-06-04 08:54:43,192 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
08:54:432025-06-04 08:54:43,192 [ scc.merge] INFO Excluding Pull Request(s) without successful status
08:55:032025-06-04 08:55:03,467 [ scc.merge] INFO Repository: ome/openmicroscopy
08:55:032025-06-04 08:55:03,467 [ scc.merge] INFO Excluded PRs:
08:55:032025-06-04 08:55:03,467 [ scc.merge] INFO - PR 6423 jburel 'Use \d' (status: failure)
08:55:032025-06-04 08:55:03,467 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
08:55:032025-06-04 08:55:03,467 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
08:55:032025-06-04 08:55:03,467 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
08:55:032025-06-04 08:55:03,467 [ scc.merge] INFO Already up to date.
08:55:032025-06-04 08:55:03,467 [ scc.merge] INFO
08:55:032025-06-04 08:55:03,467 [ scc.merge] INFO Merged PRs:
08:55:032025-06-04 08:55:03,467 [ scc.merge] INFO - PR 6309 jburel 'add try block'
08:55:032025-06-04 08:55:03,467 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
08:55:032025-06-04 08:55:03,467 [ scc.merge] INFO - PR 6428 sbesson 'Remove MaxPermSize flag in the build system'
08:55:032025-06-04 08:55:03,468 [ scc.merge] INFO - PR 6429 sbesson 'Update integration tests to be compliant with pytest 8.4.0'
08:55:032025-06-04 08:55:03,468 [ scc.merge] INFO
08:55:03+ cp etc/omero.properties etc/omero.properties.bak
08:55:03+ rm etc/omero.properties
08:55:03+ touch etc/omero.properties
08:55:03++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
08:55:03+ ne=249
08:55:03++ sed -n 1,249p etc/omero.properties.bak
08:55:03+ line='##
08:55:03## omero.properties
08:55:03## ----------------
08:55:03##
08:55:03## DO NOT EDIT!
08:55:03##
08:55:03##
08:55:03## Any of these properties can be altered by using `omero config`. MODIFYING
08:55:03## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
08:55:03## at compile time!
08:55:03##
08:55:03## For an overview of these properties, see
08:55:03## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html08:55:03##
08:55:03## Properties marked with "DEVELOPMENT" should not be used in production.
08:55:0308:55:03# Comma separated list of Ice transports available to clients. The default
08:55:03# value ("ssl,tcp") instructs Ice to open the ports specified by the
08:55:03# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
08:55:03# will prevent all non-encrypted connections to the OMERO server.
08:55:03#
08:55:03# Additionally, there are two experimental values for using websockets:
08:55:03# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
08:55:03# that are opened are controlled by the omero.ports.ws and omero.ports.wss
08:55:03# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
08:55:03#
08:55:03# Note: When using websockets behind a web server like nginx, additional
08:55:03# configuration may be needed.
08:55:03omero.client.icetransports=ssl,tcp
08:55:0308:55:03# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
08:55:03# server
08:55:03omero.ports.prefix=
08:55:0308:55:03# The Glacier2 SSL port number to use
08:55:03omero.ports.ssl=4064
08:55:0308:55:03# The Glacier2 TCP port number to use (unencrypted)
08:55:03omero.ports.tcp=4063
08:55:0308:55:03# The Glacier2 WSS port number to use
08:55:03omero.ports.wss=4066
08:55:0308:55:03# The Glacier2 WS port number to use (unencrypted)
08:55:03omero.ports.ws=4065
08:55:0308:55:03# The IceGrid registry port number to use
08:55:03omero.ports.registry=4061
08:55:0308:55:03#############################################
08:55:03## JVM configuration
08:55:03##
08:55:03## Note: changes to the omero.jvmcfg properties
08:55:03## will *not* be reflected in OMERO.server
08:55:03## since they are defined in OMERO.py.
08:55:03#############################################
08:55:03## (For documentation only)
08:55:03# Memory strategy which will be used by default.
08:55:03# Options include: percent, manual
08:55:03omero.jvmcfg.strategy=percent
08:55:0308:55:03## (For documentation only)
08:55:03# Explicit value for the `-Xmx` argument, e.g.
08:55:03# "1g"
08:55:03omero.jvmcfg.heap_size=
08:55:0308:55:03## (For documentation only)
08:55:03# Explicit value for the MaxPermSize argument
08:55:03# to the JVM, e.g. "500M". Ignored for Java8+
08:55:03omero.jvmcfg.perm_gen=
08:55:0308:55:03## (For documentation only)
08:55:03# Toggles on or off heap dumps on OOMs. Default is "off".
08:55:03# The special value "tmp" will create the heap dumps in
08:55:03# your temp directory.
08:55:03omero.jvmcfg.heap_dump=
08:55:0308:55:03## (For documentation only)
08:55:03# Used only by the percent strategy. An integer between 0
08:55:03# and 100 which is the percent of active memory that will
08:55:03# be used by the service.
08:55:03omero.jvmcfg.percent=
08:55:0308:55:03## (For documentation only)
08:55:03# Contains other parameters which should be passed to the
08:55:03# JVM. The value of "append" is treated as if it were on
08:55:03# the command line so will be separated on whitespace.
08:55:03# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
08:55:03# results in two new arguments.
08:55:03# Note that when using `config set` from the command line
08:55:03# one may need to give a prior `--` option to prevent a value
08:55:03# starting with `-` from already being parsed as an option,
08:55:03# and values may need quoting to prevent whitespace or other
08:55:03# significant characters from being interpreted prematurely.
08:55:0308:55:03omero.jvmcfg.append=
08:55:0308:55:03## (For documentation only)
08:55:03# Manual override of the total system memory that
08:55:03# OMERO will *think* is present on the local OS (MB).
08:55:03# If unset, an attempt will be made to detect the actual
08:55:03# amount: first by using the Python library `psutil` and
08:55:03# if that is not installed, by running a Java tool. If
08:55:03# neither works, 4.0GB is assumed.
08:55:03omero.jvmcfg.system_memory=
08:55:0308:55:03## (For documentation only)
08:55:03# Suggestion for strategies as to the minimum memory
08:55:03# that they will use for calculating JVM settings (MB).
08:55:03omero.jvmcfg.min_system_memory=3414
08:55:0308:55:03## (For documentation only)
08:55:03# Suggestion for strategies as to the maximum memory
08:55:03# that they will use for calculating JVM settings (MB).
08:55:03omero.jvmcfg.max_system_memory=48000
08:55:0308:55:0308:55:03#############################################
08:55:03## Logging properties
08:55:03##
08:55:03## Note: changes to the default omero.logging values in
08:55:03## this file will *not* be reflected in OMERO.server
08:55:03## since they are defined in OMERO.py
08:55:03#############################################
08:55:0308:55:03## (For documentation only)
08:55:03# Relative server directory where the log files should be stored.
08:55:03omero.logging.directory=var/log/
08:55:0308:55:03## (For documentation only)
08:55:03# Whether the server log files should be rotated at a certain time
08:55:03# interval. If true, log files will be rolled over at midnight.
08:55:03# Otherwise, log files will be rolled over at a predetermined size,
08:55:03# see omero.logging.logsize for more information.
08:55:03omero.logging.timedlog=false
08:55:0308:55:03## (For documentation only)
08:55:03# If omero.logging.timedlog is false or unset, specifies the
08:55:03# maximum size of the server log files in bytes above which a
08:55:03# new log file should be created.
08:55:03omero.logging.logsize=5000000
08:55:0308:55:03## (For documentation only)
08:55:03# If omero.logging.timedlog is false or unset, specifies the
08:55:03# number of old server log files that should be kept. Old log
08:55:03# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
08:55:03omero.logging.lognum=9
08:55:0308:55:03## (For documentation only)
08:55:03# Specifies the threshold for the Python servers log files. Logging messages
08:55:03# which are less severe than this value will be ignored. For a list of
08:55:03# available values, see https://docs.python.org/3/library/logging.html#levels.
08:55:03omero.logging.level=20
08:55:0308:55:03#############################################
08:55:03## Ice overrides
08:55:03##
08:55:03## Though not used directly by OMERO, a number
08:55:03## of properties prefixed with "Ice.*" will
08:55:03## alter the behavior of the OMERO runtime
08:55:03## by configuring the Ice communicators. For a
08:55:03## full listing see:
08:55:03##
08:55:03## http://doc.zeroc.com/display/Ice/Property+Reference08:55:03## For more information see
08:55:03## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start08:55:03#############################################
08:55:0308:55:03# Disable IPv6 by setting to 0. Only needed in
08:55:03# certain situations.
08:55:03Ice.IPv6=1
08:55:0308:55:03# Glacier2Template IceSSL defaults and overrides,
08:55:03# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
08:55:03# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
08:55:03# update the corresponding IceSSL. property.
08:55:03omero.glacier2.IceSSL=
08:55:0308:55:03# Glacier2Template SSL maximum allowed protocol (mac bug)
08:55:03omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
08:55:03# Glacier2Template SSL allowed cipher suites
08:55:03omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
08:55:03# Glacier2Template SSL verification requirements
08:55:03omero.glacier2.IceSSL.VerifyPeer=0
08:55:03# Glacier2Template SSL allowed protocols
08:55:03omero.glacier2.IceSSL.Protocols=tls1
08:55:0308:55:03# Override the default set of OMERO services.
08:55:03# For example, to run OMERO.server with Blitz and Tables only
08:55:03# (i.e. disable Processor, DropBox, Indexer, PixelData)
08:55:03# set this to ``master:Blitz-0,Tables-0``.
08:55:03# Also use this to distribute OMERO services across multiple nodes,
08:55:03# for example:
08:55:03# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
08:55:03# See
08:55:03# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples08:55:03omero.server.nodedescriptors=
08:55:0308:55:03#############################################
08:55:03## Darwin (OS X) specific defaults for templated configuration files only.
08:55:03## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
08:55:03## file.
08:55:03## Do not set these properties in ``omero config``, instead set the original
08:55:03## ``xxx.yyy`` property
08:55:03#############################################
08:55:03_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
08:55:0308:55:03## (For documentation only)
08:55:03# Name of the Python module to use when starting the Tables service
08:55:03omero.tables.module=runTables
08:55:0308:55:03#############################################
08:55:03## Server product name for release artifacts
08:55:03#############################################
08:55:03product.name=OMERO.server
08:55:0308:55:03#############################################
08:55:03### Properties below this marker are ignored by
08:55:03### omero.install.config_parser.PropertyParser
08:55:03### END
08:55:0308:55:03#############################################
08:55:03## Library versions
08:55:03#############################################
08:55:03##
08:55:03versions.findbugs=1.2.1
08:55:03versions.ice36=3.6.5
08:55:03versions.ice36_lib=36
08:55:03## internal
08:55:03versions.omeroshares36=3.6.3
08:55:03versions.omeromock36=3.6.3
08:55:03versions.icedb36=3.6.3
08:55:03versions.ipython=1.2.1
08:55:0308:55:03versions.janino=2.5.10
08:55:0308:55:03versions.reportng=1.1.1
08:55:0308:55:03versions.testng=7.5
08:55:03versions.velocity=1.4
08:55:0308:55:03versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE08:55:03versions.omero-scripts-url=${versions.omero-pypi}
08:55:0308:55:03###
08:55:03### Appended Values
08:55:03###
08:55:0308:55:03## Internal dependencies'
08:55:03+ echo '##
08:55:03## omero.properties
08:55:03## ----------------
08:55:03##
08:55:03## DO NOT EDIT!
08:55:03##
08:55:03##
08:55:03## Any of these properties can be altered by using `omero config`. MODIFYING
08:55:03## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
08:55:03## at compile time!
08:55:03##
08:55:03## For an overview of these properties, see
08:55:03## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html08:55:03##
08:55:03## Properties marked with "DEVELOPMENT" should not be used in production.
08:55:0308:55:03# Comma separated list of Ice transports available to clients. The default
08:55:03# value ("ssl,tcp") instructs Ice to open the ports specified by the
08:55:03# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
08:55:03# will prevent all non-encrypted connections to the OMERO server.
08:55:03#
08:55:03# Additionally, there are two experimental values for using websockets:
08:55:03# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
08:55:03# that are opened are controlled by the omero.ports.ws and omero.ports.wss
08:55:03# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
08:55:03#
08:55:03# Note: When using websockets behind a web server like nginx, additional
08:55:03# configuration may be needed.
08:55:03omero.client.icetransports=ssl,tcp
08:55:0308:55:03# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
08:55:03# server
08:55:03omero.ports.prefix=
08:55:0308:55:03# The Glacier2 SSL port number to use
08:55:03omero.ports.ssl=4064
08:55:0308:55:03# The Glacier2 TCP port number to use (unencrypted)
08:55:03omero.ports.tcp=4063
08:55:0308:55:03# The Glacier2 WSS port number to use
08:55:03omero.ports.wss=4066
08:55:0308:55:03# The Glacier2 WS port number to use (unencrypted)
08:55:03omero.ports.ws=4065
08:55:0308:55:03# The IceGrid registry port number to use
08:55:03omero.ports.registry=4061
08:55:0308:55:03#############################################
08:55:03## JVM configuration
08:55:03##
08:55:03## Note: changes to the omero.jvmcfg properties
08:55:03## will *not* be reflected in OMERO.server
08:55:03## since they are defined in OMERO.py.
08:55:03#############################################
08:55:03## (For documentation only)
08:55:03# Memory strategy which will be used by default.
08:55:03# Options include: percent, manual
08:55:03omero.jvmcfg.strategy=percent
08:55:0308:55:03## (For documentation only)
08:55:03# Explicit value for the `-Xmx` argument, e.g.
08:55:03# "1g"
08:55:03omero.jvmcfg.heap_size=
08:55:0308:55:03## (For documentation only)
08:55:03# Explicit value for the MaxPermSize argument
08:55:03# to the JVM, e.g. "500M". Ignored for Java8+
08:55:03omero.jvmcfg.perm_gen=
08:55:0308:55:03## (For documentation only)
08:55:03# Toggles on or off heap dumps on OOMs. Default is "off".
08:55:03# The special value "tmp" will create the heap dumps in
08:55:03# your temp directory.
08:55:03omero.jvmcfg.heap_dump=
08:55:0308:55:03## (For documentation only)
08:55:03# Used only by the percent strategy. An integer between 0
08:55:03# and 100 which is the percent of active memory that will
08:55:03# be used by the service.
08:55:03omero.jvmcfg.percent=
08:55:0308:55:03## (For documentation only)
08:55:03# Contains other parameters which should be passed to the
08:55:03# JVM. The value of "append" is treated as if it were on
08:55:03# the command line so will be separated on whitespace.
08:55:03# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
08:55:03# results in two new arguments.
08:55:03# Note that when using `config set` from the command line
08:55:03# one may need to give a prior `--` option to prevent a value
08:55:03# starting with `-` from already being parsed as an option,
08:55:03# and values may need quoting to prevent whitespace or other
08:55:03# significant characters from being interpreted prematurely.
08:55:0308:55:03omero.jvmcfg.append=
08:55:0308:55:03## (For documentation only)
08:55:03# Manual override of the total system memory that
08:55:03# OMERO will *think* is present on the local OS (MB).
08:55:03# If unset, an attempt will be made to detect the actual
08:55:03# amount: first by using the Python library `psutil` and
08:55:03# if that is not installed, by running a Java tool. If
08:55:03# neither works, 4.0GB is assumed.
08:55:03omero.jvmcfg.system_memory=
08:55:0308:55:03## (For documentation only)
08:55:03# Suggestion for strategies as to the minimum memory
08:55:03# that they will use for calculating JVM settings (MB).
08:55:03omero.jvmcfg.min_system_memory=3414
08:55:0308:55:03## (For documentation only)
08:55:03# Suggestion for strategies as to the maximum memory
08:55:03# that they will use for calculating JVM settings (MB).
08:55:03omero.jvmcfg.max_system_memory=48000
08:55:0308:55:0308:55:03#############################################
08:55:03## Logging properties
08:55:03##
08:55:03## Note: changes to the default omero.logging values in
08:55:03## this file will *not* be reflected in OMERO.server
08:55:03## since they are defined in OMERO.py
08:55:03#############################################
08:55:0308:55:03## (For documentation only)
08:55:03# Relative server directory where the log files should be stored.
08:55:03omero.logging.directory=var/log/
08:55:0308:55:03## (For documentation only)
08:55:03# Whether the server log files should be rotated at a certain time
08:55:03# interval. If true, log files will be rolled over at midnight.
08:55:03# Otherwise, log files will be rolled over at a predetermined size,
08:55:03# see omero.logging.logsize for more information.
08:55:03omero.logging.timedlog=false
08:55:0308:55:03## (For documentation only)
08:55:03# If omero.logging.timedlog is false or unset, specifies the
08:55:03# maximum size of the server log files in bytes above which a
08:55:03# new log file should be created.
08:55:03omero.logging.logsize=5000000
08:55:0308:55:03## (For documentation only)
08:55:03# If omero.logging.timedlog is false or unset, specifies the
08:55:03# number of old server log files that should be kept. Old log
08:55:03# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
08:55:03omero.logging.lognum=9
08:55:0308:55:03## (For documentation only)
08:55:03# Specifies the threshold for the Python servers log files. Logging messages
08:55:03# which are less severe than this value will be ignored. For a list of
08:55:03# available values, see https://docs.python.org/3/library/logging.html#levels.
08:55:03omero.logging.level=20
08:55:0308:55:03#############################################
08:55:03## Ice overrides
08:55:03##
08:55:03## Though not used directly by OMERO, a number
08:55:03## of properties prefixed with "Ice.*" will
08:55:03## alter the behavior of the OMERO runtime
08:55:03## by configuring the Ice communicators. For a
08:55:03## full listing see:
08:55:03##
08:55:03## http://doc.zeroc.com/display/Ice/Property+Reference08:55:03## For more information see
08:55:03## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start08:55:03#############################################
08:55:0308:55:03# Disable IPv6 by setting to 0. Only needed in
08:55:03# certain situations.
08:55:03Ice.IPv6=1
08:55:0308:55:03# Glacier2Template IceSSL defaults and overrides,
08:55:03# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
08:55:03# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
08:55:03# update the corresponding IceSSL. property.
08:55:03omero.glacier2.IceSSL=
08:55:0308:55:03# Glacier2Template SSL maximum allowed protocol (mac bug)
08:55:03omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
08:55:03# Glacier2Template SSL allowed cipher suites
08:55:03omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
08:55:03# Glacier2Template SSL verification requirements
08:55:03omero.glacier2.IceSSL.VerifyPeer=0
08:55:03# Glacier2Template SSL allowed protocols
08:55:03omero.glacier2.IceSSL.Protocols=tls1
08:55:0308:55:03# Override the default set of OMERO services.
08:55:03# For example, to run OMERO.server with Blitz and Tables only
08:55:03# (i.e. disable Processor, DropBox, Indexer, PixelData)
08:55:03# set this to ``master:Blitz-0,Tables-0``.
08:55:03# Also use this to distribute OMERO services across multiple nodes,
08:55:03# for example:
08:55:03# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
08:55:03# See
08:55:03# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples08:55:03omero.server.nodedescriptors=
08:55:0308:55:03#############################################
08:55:03## Darwin (OS X) specific defaults for templated configuration files only.
08:55:03## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
08:55:03## file.
08:55:03## Do not set these properties in ``omero config``, instead set the original
08:55:03## ``xxx.yyy`` property
08:55:03#############################################
08:55:03_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
08:55:0308:55:03## (For documentation only)
08:55:03# Name of the Python module to use when starting the Tables service
08:55:03omero.tables.module=runTables
08:55:0308:55:03#############################################
08:55:03## Server product name for release artifacts
08:55:03#############################################
08:55:03product.name=OMERO.server
08:55:0308:55:03#############################################
08:55:03### Properties below this marker are ignored by
08:55:03### omero.install.config_parser.PropertyParser
08:55:03### END
08:55:0308:55:03#############################################
08:55:03## Library versions
08:55:03#############################################
08:55:03##
08:55:03versions.findbugs=1.2.1
08:55:03versions.ice36=3.6.5
08:55:03versions.ice36_lib=36
08:55:03## internal
08:55:03versions.omeroshares36=3.6.3
08:55:03versions.omeromock36=3.6.3
08:55:03versions.icedb36=3.6.3
08:55:03versions.ipython=1.2.1
08:55:0308:55:03versions.janino=2.5.10
08:55:0308:55:03versions.reportng=1.1.1
08:55:0308:55:03versions.testng=7.5
08:55:03versions.velocity=1.4
08:55:0308:55:03versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE08:55:03versions.omero-scripts-url=${versions.omero-pypi}
08:55:0308:55:03###
08:55:03### Appended Values
08:55:03###
08:55:0308:55:03## Internal dependencies'
08:55:03+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/08:55:03+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive08:55:03+ echo versions.scripts-prefix=
08:55:03+ echo versions.scripts=merge_ci
08:55:03+ cat /home/omero/workspace/OMERO-push/version.properties
08:55:03+ git commit -a -m 'Add version.properties to etc/omero.properties'
08:55:03[detached HEAD 0adf5ee26b] Add version.properties to etc/omero.properties
08:55:03 1 file changed, 46 insertions(+), 7 deletions(-)
08:55:03+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
08:55:04To github.com:snoopycrimecop/openmicroscopy.git
08:55:04 + 11b87d054f...0adf5ee26b HEAD -> merge_ci (forced update)
08:55:04Finished: SUCCESS
![[Jenkins]](/jenkins/static/9161e9ff/images/svgs/logo.svg){kind=logo}
