09:28:58Started by upstream project "Trigger" build number 52109:28:58originally caused by:
09:28:58 Started by user devspace09:28:58Running as SYSTEM
09:28:58Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
09:28:58The recommended git tool is: NONE
09:28:58No credentials specified
09:28:58 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
09:28:58Fetching changes from the remote Git repository
09:28:58 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
09:28:58Fetching upstream changes from https://github.com/ome/openmicroscopy.git09:28:58 > git --version # timeout=10
09:28:58 > git --version # 'git version 2.43.5'
09:28:58 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
09:28:59 > git rev-parse origin/develop^{commit} # timeout=10
09:28:59Checking out Revision b2fa7db992516bdb66e199decb9e22af44bf2c27 (origin/develop)
09:28:59 > git config core.sparsecheckout # timeout=10
09:28:59 > git checkout -f b2fa7db992516bdb66e199decb9e22af44bf2c27 # timeout=30
09:28:59Commit message: "Merge pull request #6433 from jburel/numpy_update"
09:28:59 > git rev-list --no-walk 27b69ac69788e990c72b3ee0d5ff896a123abf84 # timeout=10
09:28:59Cleaning workspace
09:28:59 > git rev-parse --verify HEAD # timeout=10
09:28:59Resetting working tree
09:28:59 > git reset --hard # timeout=10
09:28:59 > git clean -fdx # timeout=10
09:28:59Copied 1 artifact from "OMERO-python-superbuild-build" build number 43509:28:59[OMERO-push] $ /bin/bash -xe /tmp/jenkins16883349531025752823.sh
09:28:59+ python3.11 -mvenv venv
09:29:02+ source /home/omero/workspace/OMERO-push/venv/bin/activate
09:29:02++ deactivate nondestructive
09:29:02++ '[' -n '' ']'
09:29:02++ '[' -n '' ']'
09:29:02++ hash -r
09:29:02++ '[' -n '' ']'
09:29:02++ unset VIRTUAL_ENV
09:29:02++ unset VIRTUAL_ENV_PROMPT
09:29:02++ '[' '!' nondestructive = nondestructive ']'
09:29:02++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
09:29:02++ export VIRTUAL_ENV
09:29:02++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:29:02++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:29:02++ export PATH
09:29:02++ '[' -n '' ']'
09:29:02++ '[' -z '' ']'
09:29:02++ _OLD_VIRTUAL_PS1=
09:29:02++ PS1='(venv) '
09:29:02++ export PS1
09:29:02++ VIRTUAL_ENV_PROMPT='(venv) '
09:29:02++ export VIRTUAL_ENV_PROMPT
09:29:02++ hash -r
09:29:02+ pip install -U pip
09:29:03Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (25.1.1)
09:29:03+ pip install -U scc
09:29:03Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
09:29:03Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.6.1)
09:29:03Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.2)
09:29:03Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
09:29:03Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.18.10)
09:29:03Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
09:29:03Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
09:29:03Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
09:29:03Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
09:29:03Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.5.0)
09:29:03Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.32.3)
09:29:03Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.10.1)
09:29:03Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.13.0)
09:29:03Requirement already satisfied: Deprecated in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.2.18)
09:29:03Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (44.0.2)
09:29:03Requirement already satisfied: cffi>=1.12 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (1.17.1)
09:29:03Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=1.12->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.22)
09:29:03Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.1)
09:29:03Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.10)
09:29:03Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2025.1.31)
09:29:03Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib64/python3.11/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.17.2)
09:29:03Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib64/python3.11/site-packages (from ruamel.yaml->scc) (0.2.12)
09:29:03+ test -e src
09:29:03+ cd src
09:29:03++ git config github.user
09:29:03+ user=snoopycrimecop
09:29:03+ scc merge develop --no-ask --reset --shallow -S success-only
09:29:072025-06-16 09:29:07,939 [ scc.merge] INFO Merging Pull Request(s) based on develop
09:29:072025-06-16 09:29:07,939 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
09:29:072025-06-16 09:29:07,939 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
09:29:072025-06-16 09:29:07,939 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
09:29:072025-06-16 09:29:07,939 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
09:29:072025-06-16 09:29:07,939 [ scc.merge] INFO Excluding Pull Request(s) without successful status
09:29:302025-06-16 09:29:30,579 [ scc.merge] INFO Repository: ome/openmicroscopy
09:29:302025-06-16 09:29:30,579 [ scc.merge] INFO Excluded PRs:
09:29:302025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6431 snoopycrimecop 'update dependencies' (status: failure)
09:29:302025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6423 jburel 'Use \d' (status: failure)
09:29:302025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
09:29:302025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
09:29:302025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
09:29:302025-06-16 09:29:30,579 [ scc.merge] INFO Already up to date.
09:29:302025-06-16 09:29:30,579 [ scc.merge] INFO
09:29:302025-06-16 09:29:30,579 [ scc.merge] INFO Merged PRs:
09:29:302025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6309 jburel 'add try block'
09:29:302025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
09:29:302025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6428 sbesson 'Remove MaxPermSize flag in the build system'
09:29:302025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6429 sbesson 'Update integration tests to be compliant with pytest 8.4.0'
09:29:302025-06-16 09:29:30,579 [ scc.merge] INFO
09:29:30+ cp etc/omero.properties etc/omero.properties.bak
09:29:30+ rm etc/omero.properties
09:29:30+ touch etc/omero.properties
09:29:30++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
09:29:30+ ne=249
09:29:30++ sed -n 1,249p etc/omero.properties.bak
09:29:30+ line='##
09:29:30## omero.properties
09:29:30## ----------------
09:29:30##
09:29:30## DO NOT EDIT!
09:29:30##
09:29:30##
09:29:30## Any of these properties can be altered by using `omero config`. MODIFYING
09:29:30## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
09:29:30## at compile time!
09:29:30##
09:29:30## For an overview of these properties, see
09:29:30## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html09:29:30##
09:29:30## Properties marked with "DEVELOPMENT" should not be used in production.
09:29:3009:29:30# Comma separated list of Ice transports available to clients. The default
09:29:30# value ("ssl,tcp") instructs Ice to open the ports specified by the
09:29:30# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
09:29:30# will prevent all non-encrypted connections to the OMERO server.
09:29:30#
09:29:30# Additionally, there are two experimental values for using websockets:
09:29:30# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
09:29:30# that are opened are controlled by the omero.ports.ws and omero.ports.wss
09:29:30# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
09:29:30#
09:29:30# Note: When using websockets behind a web server like nginx, additional
09:29:30# configuration may be needed.
09:29:30omero.client.icetransports=ssl,tcp
09:29:3009:29:30# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
09:29:30# server
09:29:30omero.ports.prefix=
09:29:3009:29:30# The Glacier2 SSL port number to use
09:29:30omero.ports.ssl=4064
09:29:3009:29:30# The Glacier2 TCP port number to use (unencrypted)
09:29:30omero.ports.tcp=4063
09:29:3009:29:30# The Glacier2 WSS port number to use
09:29:30omero.ports.wss=4066
09:29:3009:29:30# The Glacier2 WS port number to use (unencrypted)
09:29:30omero.ports.ws=4065
09:29:3009:29:30# The IceGrid registry port number to use
09:29:30omero.ports.registry=4061
09:29:3009:29:30#############################################
09:29:30## JVM configuration
09:29:30##
09:29:30## Note: changes to the omero.jvmcfg properties
09:29:30## will *not* be reflected in OMERO.server
09:29:30## since they are defined in OMERO.py.
09:29:30#############################################
09:29:30## (For documentation only)
09:29:30# Memory strategy which will be used by default.
09:29:30# Options include: percent, manual
09:29:30omero.jvmcfg.strategy=percent
09:29:3009:29:30## (For documentation only)
09:29:30# Explicit value for the `-Xmx` argument, e.g.
09:29:30# "1g"
09:29:30omero.jvmcfg.heap_size=
09:29:3009:29:30## (For documentation only)
09:29:30# Explicit value for the MaxPermSize argument
09:29:30# to the JVM, e.g. "500M". Ignored for Java8+
09:29:30omero.jvmcfg.perm_gen=
09:29:3009:29:30## (For documentation only)
09:29:30# Toggles on or off heap dumps on OOMs. Default is "off".
09:29:30# The special value "tmp" will create the heap dumps in
09:29:30# your temp directory.
09:29:30omero.jvmcfg.heap_dump=
09:29:3009:29:30## (For documentation only)
09:29:30# Used only by the percent strategy. An integer between 0
09:29:30# and 100 which is the percent of active memory that will
09:29:30# be used by the service.
09:29:30omero.jvmcfg.percent=
09:29:3009:29:30## (For documentation only)
09:29:30# Contains other parameters which should be passed to the
09:29:30# JVM. The value of "append" is treated as if it were on
09:29:30# the command line so will be separated on whitespace.
09:29:30# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
09:29:30# results in two new arguments.
09:29:30# Note that when using `config set` from the command line
09:29:30# one may need to give a prior `--` option to prevent a value
09:29:30# starting with `-` from already being parsed as an option,
09:29:30# and values may need quoting to prevent whitespace or other
09:29:30# significant characters from being interpreted prematurely.
09:29:3009:29:30omero.jvmcfg.append=
09:29:3009:29:30## (For documentation only)
09:29:30# Manual override of the total system memory that
09:29:30# OMERO will *think* is present on the local OS (MB).
09:29:30# If unset, an attempt will be made to detect the actual
09:29:30# amount: first by using the Python library `psutil` and
09:29:30# if that is not installed, by running a Java tool. If
09:29:30# neither works, 4.0GB is assumed.
09:29:30omero.jvmcfg.system_memory=
09:29:3009:29:30## (For documentation only)
09:29:30# Suggestion for strategies as to the minimum memory
09:29:30# that they will use for calculating JVM settings (MB).
09:29:30omero.jvmcfg.min_system_memory=3414
09:29:3009:29:30## (For documentation only)
09:29:30# Suggestion for strategies as to the maximum memory
09:29:30# that they will use for calculating JVM settings (MB).
09:29:30omero.jvmcfg.max_system_memory=48000
09:29:3009:29:3009:29:30#############################################
09:29:30## Logging properties
09:29:30##
09:29:30## Note: changes to the default omero.logging values in
09:29:30## this file will *not* be reflected in OMERO.server
09:29:30## since they are defined in OMERO.py
09:29:30#############################################
09:29:3009:29:30## (For documentation only)
09:29:30# Relative server directory where the log files should be stored.
09:29:30omero.logging.directory=var/log/
09:29:3009:29:30## (For documentation only)
09:29:30# Whether the server log files should be rotated at a certain time
09:29:30# interval. If true, log files will be rolled over at midnight.
09:29:30# Otherwise, log files will be rolled over at a predetermined size,
09:29:30# see omero.logging.logsize for more information.
09:29:30omero.logging.timedlog=false
09:29:3009:29:30## (For documentation only)
09:29:30# If omero.logging.timedlog is false or unset, specifies the
09:29:30# maximum size of the server log files in bytes above which a
09:29:30# new log file should be created.
09:29:30omero.logging.logsize=5000000
09:29:3009:29:30## (For documentation only)
09:29:30# If omero.logging.timedlog is false or unset, specifies the
09:29:30# number of old server log files that should be kept. Old log
09:29:30# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
09:29:30omero.logging.lognum=9
09:29:3009:29:30## (For documentation only)
09:29:30# Specifies the threshold for the Python servers log files. Logging messages
09:29:30# which are less severe than this value will be ignored. For a list of
09:29:30# available values, see https://docs.python.org/3/library/logging.html#levels.
09:29:30omero.logging.level=20
09:29:3009:29:30#############################################
09:29:30## Ice overrides
09:29:30##
09:29:30## Though not used directly by OMERO, a number
09:29:30## of properties prefixed with "Ice.*" will
09:29:30## alter the behavior of the OMERO runtime
09:29:30## by configuring the Ice communicators. For a
09:29:30## full listing see:
09:29:30##
09:29:30## http://doc.zeroc.com/display/Ice/Property+Reference09:29:30## For more information see
09:29:30## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start09:29:30#############################################
09:29:3009:29:30# Disable IPv6 by setting to 0. Only needed in
09:29:30# certain situations.
09:29:30Ice.IPv6=1
09:29:3009:29:30# Glacier2Template IceSSL defaults and overrides,
09:29:30# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
09:29:30# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
09:29:30# update the corresponding IceSSL. property.
09:29:30omero.glacier2.IceSSL=
09:29:3009:29:30# Glacier2Template SSL maximum allowed protocol (mac bug)
09:29:30omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
09:29:30# Glacier2Template SSL allowed cipher suites
09:29:30omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
09:29:30# Glacier2Template SSL verification requirements
09:29:30omero.glacier2.IceSSL.VerifyPeer=0
09:29:30# Glacier2Template SSL allowed protocols
09:29:30omero.glacier2.IceSSL.Protocols=tls1
09:29:3009:29:30# Override the default set of OMERO services.
09:29:30# For example, to run OMERO.server with Blitz and Tables only
09:29:30# (i.e. disable Processor, DropBox, Indexer, PixelData)
09:29:30# set this to ``master:Blitz-0,Tables-0``.
09:29:30# Also use this to distribute OMERO services across multiple nodes,
09:29:30# for example:
09:29:30# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
09:29:30# See
09:29:30# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples09:29:30omero.server.nodedescriptors=
09:29:3009:29:30#############################################
09:29:30## Darwin (OS X) specific defaults for templated configuration files only.
09:29:30## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
09:29:30## file.
09:29:30## Do not set these properties in ``omero config``, instead set the original
09:29:30## ``xxx.yyy`` property
09:29:30#############################################
09:29:30_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
09:29:3009:29:30## (For documentation only)
09:29:30# Name of the Python module to use when starting the Tables service
09:29:30omero.tables.module=runTables
09:29:3009:29:30#############################################
09:29:30## Server product name for release artifacts
09:29:30#############################################
09:29:30product.name=OMERO.server
09:29:3009:29:30#############################################
09:29:30### Properties below this marker are ignored by
09:29:30### omero.install.config_parser.PropertyParser
09:29:30### END
09:29:3009:29:30#############################################
09:29:30## Library versions
09:29:30#############################################
09:29:30##
09:29:30versions.findbugs=1.2.1
09:29:30versions.ice36=3.6.5
09:29:30versions.ice36_lib=36
09:29:30## internal
09:29:30versions.omeroshares36=3.6.3
09:29:30versions.omeromock36=3.6.3
09:29:30versions.icedb36=3.6.3
09:29:30versions.ipython=1.2.1
09:29:3009:29:30versions.janino=2.5.10
09:29:3009:29:30versions.reportng=1.1.1
09:29:3009:29:30versions.testng=7.5
09:29:30versions.velocity=1.4
09:29:3009:29:30versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE09:29:30versions.omero-scripts-url=${versions.omero-pypi}
09:29:3009:29:30###
09:29:30### Appended Values
09:29:30###
09:29:3009:29:30## Internal dependencies'
09:29:30+ echo '##
09:29:30## omero.properties
09:29:30## ----------------
09:29:30##
09:29:30## DO NOT EDIT!
09:29:30##
09:29:30##
09:29:30## Any of these properties can be altered by using `omero config`. MODIFYING
09:29:30## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
09:29:30## at compile time!
09:29:30##
09:29:30## For an overview of these properties, see
09:29:30## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html09:29:30##
09:29:30## Properties marked with "DEVELOPMENT" should not be used in production.
09:29:3009:29:30# Comma separated list of Ice transports available to clients. The default
09:29:30# value ("ssl,tcp") instructs Ice to open the ports specified by the
09:29:30# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
09:29:30# will prevent all non-encrypted connections to the OMERO server.
09:29:30#
09:29:30# Additionally, there are two experimental values for using websockets:
09:29:30# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
09:29:30# that are opened are controlled by the omero.ports.ws and omero.ports.wss
09:29:30# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
09:29:30#
09:29:30# Note: When using websockets behind a web server like nginx, additional
09:29:30# configuration may be needed.
09:29:30omero.client.icetransports=ssl,tcp
09:29:3009:29:30# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
09:29:30# server
09:29:30omero.ports.prefix=
09:29:3009:29:30# The Glacier2 SSL port number to use
09:29:30omero.ports.ssl=4064
09:29:3009:29:30# The Glacier2 TCP port number to use (unencrypted)
09:29:30omero.ports.tcp=4063
09:29:3009:29:30# The Glacier2 WSS port number to use
09:29:30omero.ports.wss=4066
09:29:3009:29:30# The Glacier2 WS port number to use (unencrypted)
09:29:30omero.ports.ws=4065
09:29:3009:29:30# The IceGrid registry port number to use
09:29:30omero.ports.registry=4061
09:29:3009:29:30#############################################
09:29:30## JVM configuration
09:29:30##
09:29:30## Note: changes to the omero.jvmcfg properties
09:29:30## will *not* be reflected in OMERO.server
09:29:30## since they are defined in OMERO.py.
09:29:30#############################################
09:29:30## (For documentation only)
09:29:30# Memory strategy which will be used by default.
09:29:30# Options include: percent, manual
09:29:30omero.jvmcfg.strategy=percent
09:29:3009:29:30## (For documentation only)
09:29:30# Explicit value for the `-Xmx` argument, e.g.
09:29:30# "1g"
09:29:30omero.jvmcfg.heap_size=
09:29:3009:29:30## (For documentation only)
09:29:30# Explicit value for the MaxPermSize argument
09:29:30# to the JVM, e.g. "500M". Ignored for Java8+
09:29:30omero.jvmcfg.perm_gen=
09:29:3009:29:30## (For documentation only)
09:29:30# Toggles on or off heap dumps on OOMs. Default is "off".
09:29:30# The special value "tmp" will create the heap dumps in
09:29:30# your temp directory.
09:29:30omero.jvmcfg.heap_dump=
09:29:3009:29:30## (For documentation only)
09:29:30# Used only by the percent strategy. An integer between 0
09:29:30# and 100 which is the percent of active memory that will
09:29:30# be used by the service.
09:29:30omero.jvmcfg.percent=
09:29:3009:29:30## (For documentation only)
09:29:30# Contains other parameters which should be passed to the
09:29:30# JVM. The value of "append" is treated as if it were on
09:29:30# the command line so will be separated on whitespace.
09:29:30# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
09:29:30# results in two new arguments.
09:29:30# Note that when using `config set` from the command line
09:29:30# one may need to give a prior `--` option to prevent a value
09:29:30# starting with `-` from already being parsed as an option,
09:29:30# and values may need quoting to prevent whitespace or other
09:29:30# significant characters from being interpreted prematurely.
09:29:3009:29:30omero.jvmcfg.append=
09:29:3009:29:30## (For documentation only)
09:29:30# Manual override of the total system memory that
09:29:30# OMERO will *think* is present on the local OS (MB).
09:29:30# If unset, an attempt will be made to detect the actual
09:29:30# amount: first by using the Python library `psutil` and
09:29:30# if that is not installed, by running a Java tool. If
09:29:30# neither works, 4.0GB is assumed.
09:29:30omero.jvmcfg.system_memory=
09:29:3009:29:30## (For documentation only)
09:29:30# Suggestion for strategies as to the minimum memory
09:29:30# that they will use for calculating JVM settings (MB).
09:29:30omero.jvmcfg.min_system_memory=3414
09:29:3009:29:30## (For documentation only)
09:29:30# Suggestion for strategies as to the maximum memory
09:29:30# that they will use for calculating JVM settings (MB).
09:29:30omero.jvmcfg.max_system_memory=48000
09:29:3009:29:3009:29:30#############################################
09:29:30## Logging properties
09:29:30##
09:29:30## Note: changes to the default omero.logging values in
09:29:30## this file will *not* be reflected in OMERO.server
09:29:30## since they are defined in OMERO.py
09:29:30#############################################
09:29:3009:29:30## (For documentation only)
09:29:30# Relative server directory where the log files should be stored.
09:29:30omero.logging.directory=var/log/
09:29:3009:29:30## (For documentation only)
09:29:30# Whether the server log files should be rotated at a certain time
09:29:30# interval. If true, log files will be rolled over at midnight.
09:29:30# Otherwise, log files will be rolled over at a predetermined size,
09:29:30# see omero.logging.logsize for more information.
09:29:30omero.logging.timedlog=false
09:29:3009:29:30## (For documentation only)
09:29:30# If omero.logging.timedlog is false or unset, specifies the
09:29:30# maximum size of the server log files in bytes above which a
09:29:30# new log file should be created.
09:29:30omero.logging.logsize=5000000
09:29:3009:29:30## (For documentation only)
09:29:30# If omero.logging.timedlog is false or unset, specifies the
09:29:30# number of old server log files that should be kept. Old log
09:29:30# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
09:29:30omero.logging.lognum=9
09:29:3009:29:30## (For documentation only)
09:29:30# Specifies the threshold for the Python servers log files. Logging messages
09:29:30# which are less severe than this value will be ignored. For a list of
09:29:30# available values, see https://docs.python.org/3/library/logging.html#levels.
09:29:30omero.logging.level=20
09:29:3009:29:30#############################################
09:29:30## Ice overrides
09:29:30##
09:29:30## Though not used directly by OMERO, a number
09:29:30## of properties prefixed with "Ice.*" will
09:29:30## alter the behavior of the OMERO runtime
09:29:30## by configuring the Ice communicators. For a
09:29:30## full listing see:
09:29:30##
09:29:30## http://doc.zeroc.com/display/Ice/Property+Reference09:29:30## For more information see
09:29:30## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start09:29:30#############################################
09:29:3009:29:30# Disable IPv6 by setting to 0. Only needed in
09:29:30# certain situations.
09:29:30Ice.IPv6=1
09:29:3009:29:30# Glacier2Template IceSSL defaults and overrides,
09:29:30# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
09:29:30# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
09:29:30# update the corresponding IceSSL. property.
09:29:30omero.glacier2.IceSSL=
09:29:3009:29:30# Glacier2Template SSL maximum allowed protocol (mac bug)
09:29:30omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
09:29:30# Glacier2Template SSL allowed cipher suites
09:29:30omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
09:29:30# Glacier2Template SSL verification requirements
09:29:30omero.glacier2.IceSSL.VerifyPeer=0
09:29:30# Glacier2Template SSL allowed protocols
09:29:30omero.glacier2.IceSSL.Protocols=tls1
09:29:3009:29:30# Override the default set of OMERO services.
09:29:30# For example, to run OMERO.server with Blitz and Tables only
09:29:30# (i.e. disable Processor, DropBox, Indexer, PixelData)
09:29:30# set this to ``master:Blitz-0,Tables-0``.
09:29:30# Also use this to distribute OMERO services across multiple nodes,
09:29:30# for example:
09:29:30# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
09:29:30# See
09:29:30# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples09:29:30omero.server.nodedescriptors=
09:29:3009:29:30#############################################
09:29:30## Darwin (OS X) specific defaults for templated configuration files only.
09:29:30## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
09:29:30## file.
09:29:30## Do not set these properties in ``omero config``, instead set the original
09:29:30## ``xxx.yyy`` property
09:29:30#############################################
09:29:30_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
09:29:3009:29:30## (For documentation only)
09:29:30# Name of the Python module to use when starting the Tables service
09:29:30omero.tables.module=runTables
09:29:3009:29:30#############################################
09:29:30## Server product name for release artifacts
09:29:30#############################################
09:29:30product.name=OMERO.server
09:29:3009:29:30#############################################
09:29:30### Properties below this marker are ignored by
09:29:30### omero.install.config_parser.PropertyParser
09:29:30### END
09:29:3009:29:30#############################################
09:29:30## Library versions
09:29:30#############################################
09:29:30##
09:29:30versions.findbugs=1.2.1
09:29:30versions.ice36=3.6.5
09:29:30versions.ice36_lib=36
09:29:30## internal
09:29:30versions.omeroshares36=3.6.3
09:29:30versions.omeromock36=3.6.3
09:29:30versions.icedb36=3.6.3
09:29:30versions.ipython=1.2.1
09:29:3009:29:30versions.janino=2.5.10
09:29:3009:29:30versions.reportng=1.1.1
09:29:3009:29:30versions.testng=7.5
09:29:30versions.velocity=1.4
09:29:3009:29:30versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE09:29:30versions.omero-scripts-url=${versions.omero-pypi}
09:29:3009:29:30###
09:29:30### Appended Values
09:29:30###
09:29:3009:29:30## Internal dependencies'
09:29:30+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/09:29:30+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive09:29:30+ echo versions.scripts-prefix=
09:29:30+ echo versions.scripts=merge_ci
09:29:30+ cat /home/omero/workspace/OMERO-push/version.properties
09:29:30+ git commit -a -m 'Add version.properties to etc/omero.properties'
09:29:30[detached HEAD a47686dc89] Add version.properties to etc/omero.properties
09:29:30 1 file changed, 46 insertions(+), 7 deletions(-)
09:29:30+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
09:29:32To github.com:snoopycrimecop/openmicroscopy.git
09:29:32 + 41e7d4e5b5...a47686dc89 HEAD -> merge_ci (forced update)
09:29:32Finished: SUCCESS
![[Jenkins]](/jenkins/static/9161e9ff/images/svgs/logo.svg){kind=logo}
