08:53:44Started by upstream project "Trigger" build number 63108:53:44originally caused by:
08:53:44 Started by user devspace08:53:44Running as SYSTEM
08:53:44Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
08:53:44The recommended git tool is: NONE
08:53:44No credentials specified
08:53:44 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
08:53:44Fetching changes from the remote Git repository
08:53:44 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
08:53:44Fetching upstream changes from https://github.com/ome/openmicroscopy.git08:53:44 > git --version # timeout=10
08:53:44 > git --version # 'git version 2.43.5'
08:53:44 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
08:53:44 > git rev-parse origin/develop^{commit} # timeout=10
08:53:44Checking out Revision 3503438a652ff5c436d0370e6643a16cb45f9b52 (origin/develop)
08:53:44 > git config core.sparsecheckout # timeout=10
08:53:44 > git checkout -f 3503438a652ff5c436d0370e6643a16cb45f9b52 # timeout=30
08:53:44Commit message: "Merge pull request #6436 from will-moore/fix_getObjects_by_group"
08:53:44 > git rev-list --no-walk 3503438a652ff5c436d0370e6643a16cb45f9b52 # timeout=10
08:53:44Cleaning workspace
08:53:44 > git rev-parse --verify HEAD # timeout=10
08:53:44Resetting working tree
08:53:44 > git reset --hard # timeout=10
08:53:44 > git clean -fdx # timeout=10
08:53:44Copied 1 artifact from "OMERO-python-superbuild-build" build number 52608:53:45[OMERO-push] $ /bin/bash -xe /tmp/jenkins7324458730727521752.sh
08:53:45+ python3.11 -mvenv venv
08:53:46+ source /home/omero/workspace/OMERO-push/venv/bin/activate
08:53:46++ deactivate nondestructive
08:53:46++ '[' -n '' ']'
08:53:46++ '[' -n '' ']'
08:53:46++ hash -r
08:53:46++ '[' -n '' ']'
08:53:46++ unset VIRTUAL_ENV
08:53:46++ unset VIRTUAL_ENV_PROMPT
08:53:46++ '[' '!' nondestructive = nondestructive ']'
08:53:46++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
08:53:46++ export VIRTUAL_ENV
08:53:46++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:53:46++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:53:46++ export PATH
08:53:46++ '[' -n '' ']'
08:53:46++ '[' -z '' ']'
08:53:46++ _OLD_VIRTUAL_PS1=
08:53:46++ PS1='(venv) '
08:53:46++ export PS1
08:53:46++ VIRTUAL_ENV_PROMPT='(venv) '
08:53:46++ export VIRTUAL_ENV_PROMPT
08:53:46++ hash -r
08:53:46+ pip install -U pip
08:53:47Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (25.2)
08:53:47+ pip install -U scc
08:53:47Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
08:53:47Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.6.1)
08:53:47Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.2)
08:53:47Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
08:53:47Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.18.10)
08:53:47Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
08:53:47Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
08:53:47Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
08:53:47Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
08:53:47Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.5.0)
08:53:47Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.32.3)
08:53:47Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.10.1)
08:53:47Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.13.0)
08:53:47Requirement already satisfied: Deprecated in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.2.18)
08:53:47Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (44.0.2)
08:53:47Requirement already satisfied: cffi>=1.12 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (1.17.1)
08:53:47Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=1.12->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.22)
08:53:47Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.1)
08:53:47Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.10)
08:53:47Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2025.1.31)
08:53:47Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib64/python3.11/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.17.2)
08:53:47Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib64/python3.11/site-packages (from ruamel.yaml->scc) (0.2.12)
08:53:47+ test -e src
08:53:47+ cd src
08:53:47++ git config github.user
08:53:47+ user=snoopycrimecop
08:53:47+ scc merge develop --no-ask --reset --shallow -S success-only
08:53:512025-09-26 08:53:51,949 [ scc.merge] INFO Merging Pull Request(s) based on develop
08:53:512025-09-26 08:53:51,949 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
08:53:512025-09-26 08:53:51,949 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
08:53:512025-09-26 08:53:51,949 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
08:53:512025-09-26 08:53:51,950 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
08:53:512025-09-26 08:53:51,950 [ scc.merge] INFO Excluding Pull Request(s) without successful status
08:54:122025-09-26 08:54:12,906 [ scc.merge] INFO Repository: ome/openmicroscopy
08:54:122025-09-26 08:54:12,906 [ scc.merge] INFO Excluded PRs:
08:54:122025-09-26 08:54:12,906 [ scc.merge] INFO - PR 6423 jburel 'Use \d' (status: failure)
08:54:122025-09-26 08:54:12,906 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
08:54:122025-09-26 08:54:12,906 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
08:54:122025-09-26 08:54:12,906 [ scc.merge] INFO Already up to date.
08:54:122025-09-26 08:54:12,906 [ scc.merge] INFO
08:54:122025-09-26 08:54:12,906 [ scc.merge] INFO Merged PRs:
08:54:122025-09-26 08:54:12,906 [ scc.merge] INFO - PR 6309 jburel 'add try block'
08:54:122025-09-26 08:54:12,906 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
08:54:122025-09-26 08:54:12,906 [ scc.merge] INFO - PR 6428 sbesson 'Remove MaxPermSize flag in the build system'
08:54:122025-09-26 08:54:12,906 [ scc.merge] INFO - PR 6438 sbesson 'Update OMERO.py gateway test_wrapper integration test'
08:54:122025-09-26 08:54:12,906 [ scc.merge] INFO
08:54:12+ cp etc/omero.properties etc/omero.properties.bak
08:54:12+ rm etc/omero.properties
08:54:12+ touch etc/omero.properties
08:54:12++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
08:54:12+ ne=249
08:54:12++ sed -n 1,249p etc/omero.properties.bak
08:54:12+ line='##
08:54:12## omero.properties
08:54:12## ----------------
08:54:12##
08:54:12## DO NOT EDIT!
08:54:12##
08:54:12##
08:54:12## Any of these properties can be altered by using `omero config`. MODIFYING
08:54:12## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
08:54:12## at compile time!
08:54:12##
08:54:12## For an overview of these properties, see
08:54:12## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html08:54:12##
08:54:12## Properties marked with "DEVELOPMENT" should not be used in production.
08:54:1208:54:12# Comma separated list of Ice transports available to clients. The default
08:54:12# value ("ssl,tcp") instructs Ice to open the ports specified by the
08:54:12# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
08:54:12# will prevent all non-encrypted connections to the OMERO server.
08:54:12#
08:54:12# Additionally, there are two experimental values for using websockets:
08:54:12# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
08:54:12# that are opened are controlled by the omero.ports.ws and omero.ports.wss
08:54:12# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
08:54:12#
08:54:12# Note: When using websockets behind a web server like nginx, additional
08:54:12# configuration may be needed.
08:54:12omero.client.icetransports=ssl,tcp
08:54:1208:54:12# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
08:54:12# server
08:54:12omero.ports.prefix=
08:54:1208:54:12# The Glacier2 SSL port number to use
08:54:12omero.ports.ssl=4064
08:54:1208:54:12# The Glacier2 TCP port number to use (unencrypted)
08:54:12omero.ports.tcp=4063
08:54:1208:54:12# The Glacier2 WSS port number to use
08:54:12omero.ports.wss=4066
08:54:1208:54:12# The Glacier2 WS port number to use (unencrypted)
08:54:12omero.ports.ws=4065
08:54:1208:54:12# The IceGrid registry port number to use
08:54:12omero.ports.registry=4061
08:54:1208:54:12#############################################
08:54:12## JVM configuration
08:54:12##
08:54:12## Note: changes to the omero.jvmcfg properties
08:54:12## will *not* be reflected in OMERO.server
08:54:12## since they are defined in OMERO.py.
08:54:12#############################################
08:54:12## (For documentation only)
08:54:12# Memory strategy which will be used by default.
08:54:12# Options include: percent, manual
08:54:12omero.jvmcfg.strategy=percent
08:54:1208:54:12## (For documentation only)
08:54:12# Explicit value for the `-Xmx` argument, e.g.
08:54:12# "1g"
08:54:12omero.jvmcfg.heap_size=
08:54:1208:54:12## (For documentation only)
08:54:12# Explicit value for the MaxPermSize argument
08:54:12# to the JVM, e.g. "500M". Ignored for Java8+
08:54:12omero.jvmcfg.perm_gen=
08:54:1208:54:12## (For documentation only)
08:54:12# Toggles on or off heap dumps on OOMs. Default is "off".
08:54:12# The special value "tmp" will create the heap dumps in
08:54:12# your temp directory.
08:54:12omero.jvmcfg.heap_dump=
08:54:1208:54:12## (For documentation only)
08:54:12# Used only by the percent strategy. An integer between 0
08:54:12# and 100 which is the percent of active memory that will
08:54:12# be used by the service.
08:54:12omero.jvmcfg.percent=
08:54:1208:54:12## (For documentation only)
08:54:12# Contains other parameters which should be passed to the
08:54:12# JVM. The value of "append" is treated as if it were on
08:54:12# the command line so will be separated on whitespace.
08:54:12# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
08:54:12# results in two new arguments.
08:54:12# Note that when using `config set` from the command line
08:54:12# one may need to give a prior `--` option to prevent a value
08:54:12# starting with `-` from already being parsed as an option,
08:54:12# and values may need quoting to prevent whitespace or other
08:54:12# significant characters from being interpreted prematurely.
08:54:1208:54:12omero.jvmcfg.append=
08:54:1208:54:12## (For documentation only)
08:54:12# Manual override of the total system memory that
08:54:12# OMERO will *think* is present on the local OS (MB).
08:54:12# If unset, an attempt will be made to detect the actual
08:54:12# amount: first by using the Python library `psutil` and
08:54:12# if that is not installed, by running a Java tool. If
08:54:12# neither works, 4.0GB is assumed.
08:54:12omero.jvmcfg.system_memory=
08:54:1208:54:12## (For documentation only)
08:54:12# Suggestion for strategies as to the minimum memory
08:54:12# that they will use for calculating JVM settings (MB).
08:54:12omero.jvmcfg.min_system_memory=3414
08:54:1208:54:12## (For documentation only)
08:54:12# Suggestion for strategies as to the maximum memory
08:54:12# that they will use for calculating JVM settings (MB).
08:54:12omero.jvmcfg.max_system_memory=48000
08:54:1208:54:1208:54:12#############################################
08:54:12## Logging properties
08:54:12##
08:54:12## Note: changes to the default omero.logging values in
08:54:12## this file will *not* be reflected in OMERO.server
08:54:12## since they are defined in OMERO.py
08:54:12#############################################
08:54:1208:54:12## (For documentation only)
08:54:12# Relative server directory where the log files should be stored.
08:54:12omero.logging.directory=var/log/
08:54:1208:54:12## (For documentation only)
08:54:12# Whether the server log files should be rotated at a certain time
08:54:12# interval. If true, log files will be rolled over at midnight.
08:54:12# Otherwise, log files will be rolled over at a predetermined size,
08:54:12# see omero.logging.logsize for more information.
08:54:12omero.logging.timedlog=false
08:54:1208:54:12## (For documentation only)
08:54:12# If omero.logging.timedlog is false or unset, specifies the
08:54:12# maximum size of the server log files in bytes above which a
08:54:12# new log file should be created.
08:54:12omero.logging.logsize=5000000
08:54:1208:54:12## (For documentation only)
08:54:12# If omero.logging.timedlog is false or unset, specifies the
08:54:12# number of old server log files that should be kept. Old log
08:54:12# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
08:54:12omero.logging.lognum=9
08:54:1208:54:12## (For documentation only)
08:54:12# Specifies the threshold for the Python servers log files. Logging messages
08:54:12# which are less severe than this value will be ignored. For a list of
08:54:12# available values, see https://docs.python.org/3/library/logging.html#levels.
08:54:12omero.logging.level=20
08:54:1208:54:12#############################################
08:54:12## Ice overrides
08:54:12##
08:54:12## Though not used directly by OMERO, a number
08:54:12## of properties prefixed with "Ice.*" will
08:54:12## alter the behavior of the OMERO runtime
08:54:12## by configuring the Ice communicators. For a
08:54:12## full listing see:
08:54:12##
08:54:12## http://doc.zeroc.com/display/Ice/Property+Reference08:54:12## For more information see
08:54:12## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start08:54:12#############################################
08:54:1208:54:12# Disable IPv6 by setting to 0. Only needed in
08:54:12# certain situations.
08:54:12Ice.IPv6=1
08:54:1208:54:12# Glacier2Template IceSSL defaults and overrides,
08:54:12# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
08:54:12# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
08:54:12# update the corresponding IceSSL. property.
08:54:12omero.glacier2.IceSSL=
08:54:1208:54:12# Glacier2Template SSL maximum allowed protocol (mac bug)
08:54:12omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
08:54:12# Glacier2Template SSL allowed cipher suites
08:54:12omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
08:54:12# Glacier2Template SSL verification requirements
08:54:12omero.glacier2.IceSSL.VerifyPeer=0
08:54:12# Glacier2Template SSL allowed protocols
08:54:12omero.glacier2.IceSSL.Protocols=tls1
08:54:1208:54:12# Override the default set of OMERO services.
08:54:12# For example, to run OMERO.server with Blitz and Tables only
08:54:12# (i.e. disable Processor, DropBox, Indexer, PixelData)
08:54:12# set this to ``master:Blitz-0,Tables-0``.
08:54:12# Also use this to distribute OMERO services across multiple nodes,
08:54:12# for example:
08:54:12# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
08:54:12# See
08:54:12# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples08:54:12omero.server.nodedescriptors=
08:54:1208:54:12#############################################
08:54:12## Darwin (OS X) specific defaults for templated configuration files only.
08:54:12## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
08:54:12## file.
08:54:12## Do not set these properties in ``omero config``, instead set the original
08:54:12## ``xxx.yyy`` property
08:54:12#############################################
08:54:12_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
08:54:1208:54:12## (For documentation only)
08:54:12# Name of the Python module to use when starting the Tables service
08:54:12omero.tables.module=runTables
08:54:1208:54:12#############################################
08:54:12## Server product name for release artifacts
08:54:12#############################################
08:54:12product.name=OMERO.server
08:54:1208:54:12#############################################
08:54:12### Properties below this marker are ignored by
08:54:12### omero.install.config_parser.PropertyParser
08:54:12### END
08:54:1208:54:12#############################################
08:54:12## Library versions
08:54:12#############################################
08:54:12##
08:54:12versions.findbugs=1.2.1
08:54:12versions.ice36=3.6.5
08:54:12versions.ice36_lib=36
08:54:12## internal
08:54:12versions.omeroshares36=3.6.3
08:54:12versions.omeromock36=3.6.3
08:54:12versions.icedb36=3.6.3
08:54:12versions.ipython=1.2.1
08:54:1208:54:12versions.janino=2.5.10
08:54:1208:54:12versions.reportng=1.1.1
08:54:1208:54:12versions.testng=7.5
08:54:12versions.velocity=1.4
08:54:1208:54:12versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE08:54:12versions.omero-scripts-url=${versions.omero-pypi}
08:54:1208:54:12###
08:54:12### Appended Values
08:54:12###
08:54:1208:54:12## Internal dependencies'
08:54:12+ echo '##
08:54:12## omero.properties
08:54:12## ----------------
08:54:12##
08:54:12## DO NOT EDIT!
08:54:12##
08:54:12##
08:54:12## Any of these properties can be altered by using `omero config`. MODIFYING
08:54:12## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
08:54:12## at compile time!
08:54:12##
08:54:12## For an overview of these properties, see
08:54:12## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html08:54:12##
08:54:12## Properties marked with "DEVELOPMENT" should not be used in production.
08:54:1208:54:12# Comma separated list of Ice transports available to clients. The default
08:54:12# value ("ssl,tcp") instructs Ice to open the ports specified by the
08:54:12# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
08:54:12# will prevent all non-encrypted connections to the OMERO server.
08:54:12#
08:54:12# Additionally, there are two experimental values for using websockets:
08:54:12# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
08:54:12# that are opened are controlled by the omero.ports.ws and omero.ports.wss
08:54:12# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
08:54:12#
08:54:12# Note: When using websockets behind a web server like nginx, additional
08:54:12# configuration may be needed.
08:54:12omero.client.icetransports=ssl,tcp
08:54:1208:54:12# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
08:54:12# server
08:54:12omero.ports.prefix=
08:54:1208:54:12# The Glacier2 SSL port number to use
08:54:12omero.ports.ssl=4064
08:54:1208:54:12# The Glacier2 TCP port number to use (unencrypted)
08:54:12omero.ports.tcp=4063
08:54:1208:54:12# The Glacier2 WSS port number to use
08:54:12omero.ports.wss=4066
08:54:1208:54:12# The Glacier2 WS port number to use (unencrypted)
08:54:12omero.ports.ws=4065
08:54:1208:54:12# The IceGrid registry port number to use
08:54:12omero.ports.registry=4061
08:54:1208:54:12#############################################
08:54:12## JVM configuration
08:54:12##
08:54:12## Note: changes to the omero.jvmcfg properties
08:54:12## will *not* be reflected in OMERO.server
08:54:12## since they are defined in OMERO.py.
08:54:12#############################################
08:54:12## (For documentation only)
08:54:12# Memory strategy which will be used by default.
08:54:12# Options include: percent, manual
08:54:12omero.jvmcfg.strategy=percent
08:54:1208:54:12## (For documentation only)
08:54:12# Explicit value for the `-Xmx` argument, e.g.
08:54:12# "1g"
08:54:12omero.jvmcfg.heap_size=
08:54:1208:54:12## (For documentation only)
08:54:12# Explicit value for the MaxPermSize argument
08:54:12# to the JVM, e.g. "500M". Ignored for Java8+
08:54:12omero.jvmcfg.perm_gen=
08:54:1208:54:12## (For documentation only)
08:54:12# Toggles on or off heap dumps on OOMs. Default is "off".
08:54:12# The special value "tmp" will create the heap dumps in
08:54:12# your temp directory.
08:54:12omero.jvmcfg.heap_dump=
08:54:1208:54:12## (For documentation only)
08:54:12# Used only by the percent strategy. An integer between 0
08:54:12# and 100 which is the percent of active memory that will
08:54:12# be used by the service.
08:54:12omero.jvmcfg.percent=
08:54:1208:54:12## (For documentation only)
08:54:12# Contains other parameters which should be passed to the
08:54:12# JVM. The value of "append" is treated as if it were on
08:54:12# the command line so will be separated on whitespace.
08:54:12# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
08:54:12# results in two new arguments.
08:54:12# Note that when using `config set` from the command line
08:54:12# one may need to give a prior `--` option to prevent a value
08:54:12# starting with `-` from already being parsed as an option,
08:54:12# and values may need quoting to prevent whitespace or other
08:54:12# significant characters from being interpreted prematurely.
08:54:1208:54:12omero.jvmcfg.append=
08:54:1208:54:12## (For documentation only)
08:54:12# Manual override of the total system memory that
08:54:12# OMERO will *think* is present on the local OS (MB).
08:54:12# If unset, an attempt will be made to detect the actual
08:54:12# amount: first by using the Python library `psutil` and
08:54:12# if that is not installed, by running a Java tool. If
08:54:12# neither works, 4.0GB is assumed.
08:54:12omero.jvmcfg.system_memory=
08:54:1208:54:12## (For documentation only)
08:54:12# Suggestion for strategies as to the minimum memory
08:54:12# that they will use for calculating JVM settings (MB).
08:54:12omero.jvmcfg.min_system_memory=3414
08:54:1208:54:12## (For documentation only)
08:54:12# Suggestion for strategies as to the maximum memory
08:54:12# that they will use for calculating JVM settings (MB).
08:54:12omero.jvmcfg.max_system_memory=48000
08:54:1208:54:1208:54:12#############################################
08:54:12## Logging properties
08:54:12##
08:54:12## Note: changes to the default omero.logging values in
08:54:12## this file will *not* be reflected in OMERO.server
08:54:12## since they are defined in OMERO.py
08:54:12#############################################
08:54:1208:54:12## (For documentation only)
08:54:12# Relative server directory where the log files should be stored.
08:54:12omero.logging.directory=var/log/
08:54:1208:54:12## (For documentation only)
08:54:12# Whether the server log files should be rotated at a certain time
08:54:12# interval. If true, log files will be rolled over at midnight.
08:54:12# Otherwise, log files will be rolled over at a predetermined size,
08:54:12# see omero.logging.logsize for more information.
08:54:12omero.logging.timedlog=false
08:54:1208:54:12## (For documentation only)
08:54:12# If omero.logging.timedlog is false or unset, specifies the
08:54:12# maximum size of the server log files in bytes above which a
08:54:12# new log file should be created.
08:54:12omero.logging.logsize=5000000
08:54:1208:54:12## (For documentation only)
08:54:12# If omero.logging.timedlog is false or unset, specifies the
08:54:12# number of old server log files that should be kept. Old log
08:54:12# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
08:54:12omero.logging.lognum=9
08:54:1208:54:12## (For documentation only)
08:54:12# Specifies the threshold for the Python servers log files. Logging messages
08:54:12# which are less severe than this value will be ignored. For a list of
08:54:12# available values, see https://docs.python.org/3/library/logging.html#levels.
08:54:12omero.logging.level=20
08:54:1208:54:12#############################################
08:54:12## Ice overrides
08:54:12##
08:54:12## Though not used directly by OMERO, a number
08:54:12## of properties prefixed with "Ice.*" will
08:54:12## alter the behavior of the OMERO runtime
08:54:12## by configuring the Ice communicators. For a
08:54:12## full listing see:
08:54:12##
08:54:12## http://doc.zeroc.com/display/Ice/Property+Reference08:54:12## For more information see
08:54:12## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start08:54:12#############################################
08:54:1208:54:12# Disable IPv6 by setting to 0. Only needed in
08:54:12# certain situations.
08:54:12Ice.IPv6=1
08:54:1208:54:12# Glacier2Template IceSSL defaults and overrides,
08:54:12# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
08:54:12# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
08:54:12# update the corresponding IceSSL. property.
08:54:12omero.glacier2.IceSSL=
08:54:1208:54:12# Glacier2Template SSL maximum allowed protocol (mac bug)
08:54:12omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
08:54:12# Glacier2Template SSL allowed cipher suites
08:54:12omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
08:54:12# Glacier2Template SSL verification requirements
08:54:12omero.glacier2.IceSSL.VerifyPeer=0
08:54:12# Glacier2Template SSL allowed protocols
08:54:12omero.glacier2.IceSSL.Protocols=tls1
08:54:1208:54:12# Override the default set of OMERO services.
08:54:12# For example, to run OMERO.server with Blitz and Tables only
08:54:12# (i.e. disable Processor, DropBox, Indexer, PixelData)
08:54:12# set this to ``master:Blitz-0,Tables-0``.
08:54:12# Also use this to distribute OMERO services across multiple nodes,
08:54:12# for example:
08:54:12# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
08:54:12# See
08:54:12# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples08:54:12omero.server.nodedescriptors=
08:54:1208:54:12#############################################
08:54:12## Darwin (OS X) specific defaults for templated configuration files only.
08:54:12## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
08:54:12## file.
08:54:12## Do not set these properties in ``omero config``, instead set the original
08:54:12## ``xxx.yyy`` property
08:54:12#############################################
08:54:12_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
08:54:1208:54:12## (For documentation only)
08:54:12# Name of the Python module to use when starting the Tables service
08:54:12omero.tables.module=runTables
08:54:1208:54:12#############################################
08:54:12## Server product name for release artifacts
08:54:12#############################################
08:54:12product.name=OMERO.server
08:54:1208:54:12#############################################
08:54:12### Properties below this marker are ignored by
08:54:12### omero.install.config_parser.PropertyParser
08:54:12### END
08:54:1208:54:12#############################################
08:54:12## Library versions
08:54:12#############################################
08:54:12##
08:54:12versions.findbugs=1.2.1
08:54:12versions.ice36=3.6.5
08:54:12versions.ice36_lib=36
08:54:12## internal
08:54:12versions.omeroshares36=3.6.3
08:54:12versions.omeromock36=3.6.3
08:54:12versions.icedb36=3.6.3
08:54:12versions.ipython=1.2.1
08:54:1208:54:12versions.janino=2.5.10
08:54:1208:54:12versions.reportng=1.1.1
08:54:1208:54:12versions.testng=7.5
08:54:12versions.velocity=1.4
08:54:1208:54:12versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE08:54:12versions.omero-scripts-url=${versions.omero-pypi}
08:54:1208:54:12###
08:54:12### Appended Values
08:54:12###
08:54:1208:54:12## Internal dependencies'
08:54:12+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/08:54:12+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive08:54:12+ echo versions.scripts-prefix=
08:54:12+ echo versions.scripts=merge_ci
08:54:12+ cat /home/omero/workspace/OMERO-push/version.properties
08:54:12+ git commit -a -m 'Add version.properties to etc/omero.properties'
08:54:12[detached HEAD 0254fd01d1] Add version.properties to etc/omero.properties
08:54:12 1 file changed, 46 insertions(+), 7 deletions(-)
08:54:12+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
08:54:14To github.com:snoopycrimecop/openmicroscopy.git
08:54:14 + 869cf36bd6...0254fd01d1 HEAD -> merge_ci (forced update)
08:54:14Finished: SUCCESS
![[Jenkins]](/jenkins/static/9161e9ff/images/svgs/logo.svg){kind=logo}
