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#14 298.1 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar (780 kB at 5.3 MB/s)
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Downloaded from central: https://repo.maven.apache.org/maven2/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar (6.0 MB at 16 MB/s)
#14 298.3 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#14 298.3 Downloading from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (80 kB at 87 kB/s)
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Downloaded from unidata.releases: https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (4.3 MB at 1.5 MB/s)
#14 301.1 [[1;34mINFO[m]
#14 301.1 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mformats-gpl[0;1m ---[m
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#14 301.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 301.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 301.1 [[1;34mINFO[m] Storing buildNumber: 4947e06eb4b014c0d747d097d1dedb828350f239 at timestamp: 1732101712128
#14 301.1 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 301.1 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 301.1
#14 301.1 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 301.1 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 301.1 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
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#14 301.2 [[1;34mINFO[m] Copying 1 resource
#14 301.2 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/formats-gpl/lib
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#14 301.2 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 301.2 [[1;34mINFO[m] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/target/classes
#14 303.3 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Some input files use or override a deprecated API.
#14 303.3 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java: Recompile with -Xlint:deprecation for details.
#14 303.3 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Some input files use unchecked or unsafe operations.
#14 303.3 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/ImarisHDFReader.java: Recompile with -Xlint:unchecked for details.
#14 303.3 [[1;34mINFO[m]
#14 303.3 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mformats-gpl[0;1m ---[m
#14 303.4 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 303.4 [[1;34mINFO[m] Copying 24 resources
#14 303.4 [[1;34mINFO[m]
#14 303.4 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mformats-gpl[0;1m ---[m
#14 303.4 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 303.4 [[1;34mINFO[m] Compiling 23 source files to /bio-formats-build/bioformats/components/formats-gpl/target/test-classes
#14 303.6 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java uses unchecked or unsafe operations.
#14 303.6 [[1;34mINFO[m] /bio-formats-build/bioformats/components/formats-gpl/test/loci/formats/utests/InOutCurrentTest.java: Recompile with -Xlint:unchecked for details.
#14 303.6 [[1;34mINFO[m]
#14 303.6 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mformats-gpl[0;1m ---[m
#14 303.6 [[1;34mINFO[m]
#14 303.6 [[1;34mINFO[m] -------------------------------------------------------
#14 303.6 [[1;34mINFO[m] T E S T S
#14 303.6 [[1;34mINFO[m] -------------------------------------------------------
#14 303.7 [[1;34mINFO[m] Running [1mTestSuite[m
#14 304.9 2024-11-20 11:21:55,907 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@66f66866 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 304.9 2024-11-20 11:21:55,911 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@589b028e reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 305.0 2024-11-20 11:21:55,963 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@3163987e reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 305.0 2024-11-20 11:21:55,963 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@2577d6c8 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 305.0 2024-11-20 11:21:56,011 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@511816c0 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 305.0 2024-11-20 11:21:56,012 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@68105edc reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 305.1 2024-11-20 11:21:56,059 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@412c995d reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 305.1 2024-11-20 11:21:56,059 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@497570fb reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 305.1 2024-11-20 11:21:56,104 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@4159e81b reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 305.1 2024-11-20 11:21:56,104 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@40226788 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 305.2 2024-11-20 11:21:56,163 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@2adddc06 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 305.2 2024-11-20 11:21:56,164 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@301d8120 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 305.2 2024-11-20 11:21:56,207 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@6bcbf05b reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 305.2 2024-11-20 11:21:56,207 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@458544e0 reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 305.3 2024-11-20 11:21:56,248 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.FilterSet@b558294 reference to urn:lsid:foo.bar.com:Dichroic:123456 missing from object hierarchy.
#14 305.3 2024-11-20 11:21:56,248 [main] WARN ome.xml.model.OMEModelImpl - ome.xml.model.Laser@5560bcdf reference to urn:lsid:foo.bar.com:LightSource:123789 missing from object hierarchy.
#14 305.5 [[1;34mINFO[m] [1;32mTests run: [0;1;32m99[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.751 s - in [1mTestSuite[m
#14 305.8 [[1;34mINFO[m]
#14 305.8 [[1;34mINFO[m] Results:
#14 305.8 [[1;34mINFO[m]
#14 305.8 [[1;34mINFO[m] [1;32mTests run: 99, Failures: 0, Errors: 0, Skipped: 0[m
#14 305.8 [[1;34mINFO[m]
#14 305.8 [[1;34mINFO[m]
#14 305.8 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-mdb-test)[m @ [36mformats-gpl[0;1m ---[m
#14 305.8 [[1;34mINFO[m]
#14 305.8 [[1;34mINFO[m] -------------------------------------------------------
#14 305.8 [[1;34mINFO[m] T E S T S
#14 305.8 [[1;34mINFO[m] -------------------------------------------------------
#14 306.0 [[1;34mINFO[m] Running [1mTestSuite[m
#14 306.4 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.403 s - in [1mTestSuite[m
#14 306.7 [[1;34mINFO[m]
#14 306.7 [[1;34mINFO[m] Results:
#14 306.7 [[1;34mINFO[m]
#14 306.7 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 306.7 [[1;34mINFO[m]
#14 306.7 [[1;34mINFO[m]
#14 306.7 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-poi-test)[m @ [36mformats-gpl[0;1m ---[m
#14 306.7 [[1;34mINFO[m]
#14 306.7 [[1;34mINFO[m] -------------------------------------------------------
#14 306.7 [[1;34mINFO[m] T E S T S
#14 306.7 [[1;34mINFO[m] -------------------------------------------------------
#14 306.9 [[1;34mINFO[m] Running [1mTestSuite[m
#14 307.3 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.411 s - in [1mTestSuite[m
#14 307.6 [[1;34mINFO[m]
#14 307.6 [[1;34mINFO[m] Results:
#14 307.6 [[1;34mINFO[m]
#14 307.6 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 307.6 [[1;34mINFO[m]
#14 307.6 [[1;34mINFO[m]
#14 307.6 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(missing-netcdf-test)[m @ [36mformats-gpl[0;1m ---[m
#14 307.6 [[1;34mINFO[m]
#14 307.6 [[1;34mINFO[m] -------------------------------------------------------
#14 307.6 [[1;34mINFO[m] T E S T S
#14 307.6 [[1;34mINFO[m] -------------------------------------------------------
#14 307.8 [[1;34mINFO[m] Running [1mTestSuite[m
#14 308.2 [[1;34mINFO[m] [1;32mTests run: [0;1;32m1[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.409 s - in [1mTestSuite[m
#14 308.5 [[1;34mINFO[m]
#14 308.5 [[1;34mINFO[m] Results:
#14 308.5 [[1;34mINFO[m]
#14 308.5 [[1;34mINFO[m] [1;32mTests run: 1, Failures: 0, Errors: 0, Skipped: 0[m
#14 308.5 [[1;34mINFO[m]
#14 308.5 [[1;34mINFO[m]
#14 308.5 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mformats-gpl[0;1m ---[m
#14 308.5 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT.jar
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m >>>[m
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mformats-gpl[0;1m ---[m
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 308.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 308.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 308.6 [[1;34mINFO[m] Storing buildNumber: 4947e06eb4b014c0d747d097d1dedb828350f239 at timestamp: 1732101719550
#14 308.6 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 308.6 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 308.6
#14 308.6 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/formats-gpl' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 308.6 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/formats-gpl
#14 308.6 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mformats-gpl[0;1m <<<[m
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 308.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-sources.jar
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mformats-gpl[0;1m ---[m
#14 308.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-tests.jar
#14 308.6 [[1;34mINFO[m]
#14 308.6 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mformats-gpl[0;1m ---[m
#14 308.6 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#14 308.6 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#14 308.6 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-sources.jar
#14 308.7 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT-tests.jar
#14 308.7 [[1;34mINFO[m]
#14 308.7 [[1;34mINFO[m] [1m----------------------< [0;36mome:bio-formats_plugins[0;1m >-----------------------[m
#14 308.7 [[1;34mINFO[m] [1mBuilding Bio-Formats Plugins for ImageJ 8.1.0-SNAPSHOT [17/24][m
#14 308.7 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 308.7 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.pom
#14 308.7 Progress (1): 4.1/7.9 kB
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#14 308.7 Downloading from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/net/imagej/ij/1.54c/ij-1.54c.jar (2.5 MB at 20 MB/s)
#14 308.8 [[1;34mINFO[m]
#14 308.8 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 308.8 [[1;34mINFO[m]
#14 308.8 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 308.8 [[1;34mINFO[m]
#14 308.8 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 308.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 308.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 308.8 [[1;34mINFO[m] Storing buildNumber: 4947e06eb4b014c0d747d097d1dedb828350f239 at timestamp: 1732101719822
#14 308.8 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 308.8 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 308.8
#14 308.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 308.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 308.8 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 308.8 [[1;34mINFO[m]
#14 308.8 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 308.8 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 308.8 [[1;34mINFO[m] Copying 3 resources
#14 308.8 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-plugins/lib
#14 308.8 [[1;34mINFO[m] Copying 0 resource
#14 308.8 [[1;34mINFO[m] Copying 0 resource
#14 308.8 [[1;34mINFO[m]
#14 308.8 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 308.9 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 308.9 [[1;34mINFO[m] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/classes
#14 309.4 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Some input files use or override a deprecated API.
#14 309.4 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java: Recompile with -Xlint:deprecation for details.
#14 309.4 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#14 309.4 [[1;34mINFO[m] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java: Recompile with -Xlint:unchecked for details.
#14 309.4 [[1;34mINFO[m]
#14 309.4 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 309.4 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 309.4 [[1;34mINFO[m] Copying 1 resource
#14 309.4 [[1;34mINFO[m]
#14 309.4 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 309.4 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 309.4 [[1;34mINFO[m] Compiling 3 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/target/test-classes
#14 309.6 [[1;34mINFO[m]
#14 309.6 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 309.6 [[1;34mINFO[m]
#14 309.6 [[1;34mINFO[m] -------------------------------------------------------
#14 309.6 [[1;34mINFO[m] T E S T S
#14 309.6 [[1;34mINFO[m] -------------------------------------------------------
#14 309.7 [[1;34mINFO[m] Running [1mTestSuite[m
#14 311.1 Warning: Data has too many channels for Colorized color mode
#14 311.1 Warning: Data has too many channels for Colorized color mode
#14 311.2 Warning: Data has too many channels for Colorized color mode
#14 311.2 Warning: Data has too many channels for Colorized color mode
#14 311.3 Warning: Data has too many channels for Colorized color mode
#14 311.3 Warning: Data has too many channels for Colorized color mode
#14 311.3 Warning: Data has too many channels for Colorized color mode
#14 311.4 Warning: Data has too many channels for Colorized color mode
#14 311.4 Warning: Data has too many channels for Composite color mode
#14 311.4 Warning: Data has too many channels for Composite color mode
#14 311.7 Warning: Data has too many channels for Composite color mode
#14 311.7 Warning: Data has too many channels for Composite color mode
#14 311.7 Warning: Data has too many channels for Composite color mode
#14 311.7 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 311.8 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.2 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Composite color mode
#14 312.3 Warning: Data has too many channels for Composite color mode
#14 312.6 Warning: Data has too many channels for Composite color mode
#14 312.7 Warning: Data has too many channels for Composite color mode
#14 312.7 Warning: Data has too many channels for Composite color mode
#14 312.7 Warning: Data has too many channels for Composite color mode
#14 312.7 Warning: Data has too many channels for Composite color mode
#14 312.7 Warning: Data has too many channels for Composite color mode
#14 312.7 Warning: Data has too many channels for Composite color mode
#14 312.7 Warning: Data has too many channels for Composite color mode
#14 312.7 Warning: Data has too many channels for Composite color mode
#14 312.7 Warning: Data has too many channels for Composite color mode
#14 312.8 Warning: Data has too many channels for Composite color mode
#14 312.8 Warning: Data has too many channels for Composite color mode
#14 312.8 Warning: Data has too many channels for Composite color mode
#14 312.8 Warning: Data has too many channels for Composite color mode
#14 312.8 Warning: Data has too many channels for Composite color mode
#14 312.8 Warning: Data has too many channels for Composite color mode
#14 313.1 Warning: Data has too many channels for Composite color mode
#14 313.1 Warning: Data has too many channels for Composite color mode
#14 313.2 Warning: Data has too many channels for Composite color mode
#14 313.2 Warning: Data has too many channels for Composite color mode
#14 313.2 Warning: Data has too many channels for Composite color mode
#14 313.2 Warning: Data has too many channels for Composite color mode
#14 313.2 Warning: Data has too many channels for Composite color mode
#14 313.2 Warning: Data has too many channels for Composite color mode
#14 313.2 Warning: Data has too many channels for Composite color mode
#14 313.2 Warning: Data has too many channels for Composite color mode
#14 313.2 Warning: Data has too many channels for Composite color mode
#14 313.2 Warning: Data has too many channels for Composite color mode
#14 313.3 Warning: Data has too many channels for Composite color mode
#14 313.3 Warning: Data has too many channels for Composite color mode
#14 313.3 Warning: Data has too many channels for Composite color mode
#14 313.3 Warning: Data has too many channels for Composite color mode
#14 313.3 Warning: Data has too many channels for Custom color mode
#14 313.3 Warning: Data has too many channels for Custom color mode
#14 313.4 Warning: Data has too many channels for Custom color mode
#14 313.4 Warning: Data has too many channels for Custom color mode
#14 313.4 Warning: Data has too many channels for Custom color mode
#14 313.4 Warning: Data has too many channels for Custom color mode
#14 313.5 Warning: Data has too many channels for Custom color mode
#14 313.5 Warning: Data has too many channels for Custom color mode
#14 313.5 Warning: Data has too many channels for Default color mode
#14 313.5 Warning: Data has too many channels for Default color mode
#14 313.5 Warning: Data has too many channels for Default color mode
#14 313.6 Warning: Data has too many channels for Default color mode
#14 313.6 Warning: Data has too many channels for Default color mode
#14 313.6 Warning: Data has too many channels for Default color mode
#14 313.6 Warning: Data has too many channels for Default color mode
#14 313.6 Warning: Data has too many channels for Default color mode
#14 313.7 Warning: Data has too many channels for Default color mode
#14 313.7 Warning: Data has too many channels for Default color mode
#14 313.7 Warning: Data has too many channels for Default color mode
#14 313.7 Warning: Data has too many channels for Default color mode
#14 313.8 Warning: Data has too many channels for Default color mode
#14 313.8 Warning: Data has too many channels for Default color mode
#14 313.8 Warning: Data has too many channels for Default color mode
#14 313.8 Warning: Data has too many channels for Default color mode
#14 313.9 Warning: Data has too many channels for Grayscale color mode
#14 313.9 Warning: Data has too many channels for Grayscale color mode
#14 313.9 Warning: Data has too many channels for Grayscale color mode
#14 313.9 Warning: Data has too many channels for Grayscale color mode
#14 314.0 Warning: Data has too many channels for Grayscale color mode
#14 314.0 Warning: Data has too many channels for Grayscale color mode
#14 314.0 Warning: Data has too many channels for Grayscale color mode
#14 314.0 Warning: Data has too many channels for Grayscale color mode
#14 314.1 Warning: Data has too many channels for Colorized color mode
#14 314.1 Warning: Data has too many channels for Colorized color mode
#14 314.1 Warning: Data has too many channels for Colorized color mode
#14 314.7 Warning: Data has too many channels for Default color mode
#14 314.9 [[1;34mINFO[m] [1;32mTests run: [0;1;32m30[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.125 s - in [1mTestSuite[m
#14 315.2 [[1;34mINFO[m]
#14 315.2 [[1;34mINFO[m] Results:
#14 315.2 [[1;34mINFO[m]
#14 315.2 [[1;34mINFO[m] [1;32mTests run: 30, Failures: 0, Errors: 0, Skipped: 0[m
#14 315.2 [[1;34mINFO[m]
#14 315.2 [[1;34mINFO[m]
#14 315.2 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 315.2 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#14 315.2 [[1;34mINFO[m]
#14 315.2 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m >>>[m
#14 315.2 [[1;34mINFO[m]
#14 315.2 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 315.2 [[1;34mINFO[m]
#14 315.2 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 315.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 315.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 315.2 [[1;34mINFO[m] Storing buildNumber: 4947e06eb4b014c0d747d097d1dedb828350f239 at timestamp: 1732101726221
#14 315.2 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 315.2 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 315.2
#14 315.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-plugins' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 315.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-plugins
#14 315.2 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 315.2 [[1;34mINFO[m]
#14 315.2 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats_plugins[0;1m <<<[m
#14 315.2 [[1;34mINFO[m]
#14 315.2 [[1;34mINFO[m]
#14 315.2 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 315.3 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar
#14 315.3 [[1;34mINFO[m]
#14 315.3 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 315.3 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar
#14 315.3 [[1;34mINFO[m]
#14 315.3 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats_plugins[0;1m ---[m
#14 315.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#14 315.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#14 315.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT-sources.jar
#14 315.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/target/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT-tests.jar
#14 315.3 [[1;34mINFO[m]
#14 315.3 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bio-formats-tools[0;1m >------------------------[m
#14 315.3 [[1;34mINFO[m] [1mBuilding Bio-Formats command line tools 8.1.0-SNAPSHOT [18/24][m
#14 315.3 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#14 315.3 [[1;34mINFO[m]
#14 315.3 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbio-formats-tools[0;1m ---[m
#14 315.3 [[1;34mINFO[m]
#14 315.3 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 315.3 [[1;34mINFO[m]
#14 315.3 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 315.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 315.3 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 315.3 [[1;34mINFO[m] Storing buildNumber: 4947e06eb4b014c0d747d097d1dedb828350f239 at timestamp: 1732101726293
#14 315.3 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 315.3 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 315.3
#14 315.3 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 315.3 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 315.3 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 315.3 [[1;34mINFO[m]
#14 315.3 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 315.3 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 315.3 [[1;34mINFO[m] Copying 0 resource
#14 315.3 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bioformats/components/bio-formats-tools/lib
#14 315.3 [[1;34mINFO[m] Copying 0 resource
#14 315.3 [[1;34mINFO[m] Copying 0 resource
#14 315.3 [[1;34mINFO[m]
#14 315.3 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:compile[m [1m(default-compile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 315.3 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 315.3 [[1;34mINFO[m] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/target/classes
#14 315.5 [[1;34mINFO[m]
#14 315.5 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats-tools[0;1m ---[m
#14 315.5 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#14 315.5 [[1;34mINFO[m] Copying 1 resource
#14 315.5 [[1;34mINFO[m]
#14 315.5 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats-tools[0;1m ---[m
#14 315.5 [[1;34mINFO[m] Changes detected - recompiling the module!
#14 315.5 [[1;34mINFO[m] Compiling 1 source file to /bio-formats-build/bioformats/components/bio-formats-tools/target/test-classes
#14 315.6 [[1;34mINFO[m]
#14 315.6 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats-tools[0;1m ---[m
#14 315.6 [[1;34mINFO[m]
#14 315.6 [[1;34mINFO[m] -------------------------------------------------------
#14 315.6 [[1;34mINFO[m] T E S T S
#14 315.6 [[1;34mINFO[m] -------------------------------------------------------
#14 315.8 [[1;34mINFO[m] Running loci.formats.tools.[1mImageConverterTest[m
#14 379.4 [[1;34mINFO[m] [1;32mTests run: [0;1;32m55[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 63.65 s - in loci.formats.tools.[1mImageConverterTest[m
#14 379.8 [[1;34mINFO[m]
#14 379.8 [[1;34mINFO[m] Results:
#14 379.8 [[1;34mINFO[m]
#14 379.8 [[1;34mINFO[m] [1;32mTests run: 55, Failures: 0, Errors: 0, Skipped: 0[m
#14 379.8 [[1;34mINFO[m]
#14 379.8 [[1;34mINFO[m]
#14 379.8 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats-tools[0;1m ---[m
#14 379.8 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT.jar
#14 379.8 [[1;34mINFO[m]
#14 379.8 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m >>>[m
#14 379.8 [[1;34mINFO[m]
#14 379.8 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbio-formats-tools[0;1m ---[m
#14 379.8 [[1;34mINFO[m]
#14 379.8 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 379.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 379.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 379.8 [[1;34mINFO[m] Storing buildNumber: 4947e06eb4b014c0d747d097d1dedb828350f239 at timestamp: 1732101790807
#14 379.8 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 379.8 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 379.8
#14 379.8 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bio-formats-tools' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 379.8 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bio-formats-tools
#14 379.8 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 379.8 [[1;34mINFO[m]
#14 379.8 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbio-formats-tools[0;1m <<<[m
#14 379.8 [[1;34mINFO[m]
#14 379.8 [[1;34mINFO[m]
#14 379.8 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 379.8 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar
#14 379.8 [[1;34mINFO[m]
#14 379.8 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:test-jar[m [1m(default)[m @ [36mbio-formats-tools[0;1m ---[m
#14 379.8 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-tests.jar
#14 379.8 [[1;34mINFO[m]
#14 379.8 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats-tools[0;1m ---[m
#14 379.8 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#14 379.8 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#14 379.8 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT-sources.jar
#14 379.8 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bio-formats-tools/target/bio-formats-tools-8.1.0-SNAPSHOT-tests.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT-tests.jar
#14 379.8 [[1;34mINFO[m]
#14 379.8 [[1;34mINFO[m] [1m-----------------------< [0;36mome:bioformats_package[0;1m >-----------------------[m
#14 379.8 [[1;34mINFO[m] [1mBuilding bioformats_package bundle 8.1.0-SNAPSHOT [19/24][m
#14 379.8 [[1;34mINFO[m] [1m--------------------------------[ pom ]---------------------------------[m
#14 379.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-assembly-plugin/3.1.0/maven-assembly-plugin-3.1.0.pom
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#14 379.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-assembly-plugin/3.1.0/maven-assembly-plugin-3.1.0.jar
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#14 379.9 [[1;34mINFO[m]
#14 379.9 [[1;34mINFO[m] [1m--- [0;32mmaven-clean-plugin:3.1.0:clean[m [1m(default-clean)[m @ [36mbioformats_package[0;1m ---[m
#14 379.9 [[1;34mINFO[m]
#14 379.9 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbioformats_package[0;1m ---[m
#14 379.9 [[1;34mINFO[m]
#14 379.9 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 379.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 379.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 379.9 [[1;34mINFO[m] Storing buildNumber: 4947e06eb4b014c0d747d097d1dedb828350f239 at timestamp: 1732101790914
#14 379.9 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 379.9 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 379.9
#14 379.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 379.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 379.9 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 379.9 [[1;34mINFO[m]
#14 379.9 [[1;34mINFO[m] [1m>>> [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m > [0;1mgenerate-sources[m @ [36mbioformats_package[0;1m >>>[m
#14 379.9 [[1;34mINFO[m]
#14 379.9 [[1;34mINFO[m] [1m--- [0;32mmaven-enforcer-plugin:3.0.0-M2:enforce[m [1m(enforce-versions)[m @ [36mbioformats_package[0;1m ---[m
#14 379.9 [[1;34mINFO[m]
#14 379.9 [[1;34mINFO[m] [1m--- [0;32mbuildnumber-maven-plugin:1.4:create[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 379.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 379.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 379.9 [[1;34mINFO[m] Storing buildNumber: 4947e06eb4b014c0d747d097d1dedb828350f239 at timestamp: 1732101790931
#14 379.9 [[1;33mWARNING[m] Cannot get the branch information from the git repository:
#14 379.9 Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
#14 379.9
#14 379.9 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/bundles/bioformats_package' && 'git' 'rev-parse' '--verify' 'HEAD'
#14 379.9 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/bundles/bioformats_package
#14 379.9 [[1;34mINFO[m] Storing buildScmBranch: UNKNOWN
#14 379.9 [[1;34mINFO[m]
#14 379.9 [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[0;1m < [0;1mgenerate-sources[m @ [36mbioformats_package[0;1m <<<[m
#14 379.9 [[1;34mINFO[m]
#14 379.9 [[1;34mINFO[m]
#14 379.9 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar[m [1m(default)[m @ [36mbioformats_package[0;1m ---[m
#14 380.0 [[1;34mINFO[m]
#14 380.0 [[1;34mINFO[m] [1m--- [0;32mmaven-assembly-plugin:3.1.0:single[m [1m(make-assembly)[m @ [36mbioformats_package[0;1m ---[m
#14 380.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-artifact-transfer/0.9.0/maven-artifact-transfer-0.9.0.pom
#14 380.0 Progress (1): 4.1/7.6 kB
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#14 380.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-artifact-transfer/0.9.0/maven-artifact-transfer-0.9.0.jar
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#14 380.1 [[1;34mINFO[m] Reading assembly descriptor: assembly.xml
#14 380.4 [[1;33mWARNING[m] The following patterns were never triggered in this artifact exclusion filter:
#14 380.4 o 'gov.nih.imagej:imagej'
#14 380.4 o 'net.imagej:ij'
#14 380.4 o 'org.springframework:spring*'
#14 380.4 o 'aopalliance:aopalliance'
#14 380.4 o 'org.aspectj:aspectj*'
#14 380.4 o 'org.slf4j:slf4j-log4j12'
#14 380.4 o 'log4j:log4j'
#14 380.4 o 'org.testng:testng'
#14 380.4 o 'com.beust:jcommander'
#14 380.4 o 'org.beanshell:bsh'
#14 380.4 o 'edu.princeton.cup:java-cup'
#14 380.4 o 'org.apache.bcel:bcel'
#14 380.4 o 'regexp:regexp'
#14 380.4 o 'org.apache.ant:ant-trax'
#14 380.4 o 'edu.ucar:udunits'
#14 380.4 o 'javax.servlet:servlet-api'
#14 380.4
#14 380.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.8/maven-bundle-plugin-5.1.8.pom
#14 380.4 Progress (1): 4.1/11 kB
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#14 380.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/felix-parent/7/felix-parent-7.pom
#14 380.4 Progress (1): 4.1/21 kB
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#14 380.4 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/6.0.0/org.osgi.core-6.0.0.pom
#14 380.5 Progress (1): 1.1 kB
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#14 380.5 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/biz.aQute.bndlib/6.3.1/biz.aQute.bndlib-6.3.1.pom
#14 380.5 Progress (1): 4.1/5.2 kB
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#14 380.5 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.dto/1.0.0/org.osgi.dto-1.0.0.pom
#14 380.5 Progress (
#14 380.5 [output clipped, log limit 2MiB reached]
#14 485.3 SLF4J: No SLF4J providers were found.
#14 485.3 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 485.3 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 495.2s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s
#16 [12/13] RUN ant jars tools
#16 0.779 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.409 [echo] isSnapshot = true
#16 1.518
#16 1.518 copy-jars:
#16 1.518
#16 1.518 deps-formats-api:
#16 1.606 [echo] isSnapshot = true
#16 1.661
#16 1.661 install-pom:
#16 1.832 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 1.916 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 1.920 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.921
#16 1.921 jar-formats-api:
#16 2.025 [echo] isSnapshot = true
#16 2.185
#16 2.185 init-title:
#16 2.185 [echo] ----------=========== formats-api ===========----------
#16 2.185
#16 2.185 init-timestamp:
#16 2.192
#16 2.192 init:
#16 2.192
#16 2.192 copy-resources:
#16 2.193 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.205 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.208
#16 2.208 compile:
#16 2.402 [resolver:resolve] Resolving artifacts
#16 2.431 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.691 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 3.292 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.292 [javac] import loci.common.ReflectedUniverse;
#16 3.292 [javac] ^
#16 3.492 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.492 [javac] int currentIndex = r.getCoreIndex();
#16 3.493 [javac] ^
#16 3.493 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.493 [javac] r.setCoreIndex(coreIndex);
#16 3.493 [javac] ^
#16 3.493 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.493 [javac] r.setCoreIndex(currentIndex);
#16 3.493 [javac] ^
#16 3.693 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.693 [javac] public void setCoreIndex(int no) {
#16 3.693 [javac] ^
#16 3.693 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.693 [javac] public int getCoreIndex() {
#16 3.693 [javac] ^
#16 3.693 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.693 [javac] public int coreIndexToSeries(int index)
#16 3.693 [javac] ^
#16 3.694 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.694 [javac] public int seriesToCoreIndex(int series)
#16 3.694 [javac] ^
#16 3.694 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.694 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.694 [javac] ^
#16 3.694 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.694 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 3.694 [javac] ^
#16 3.694 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.694 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 3.694 [javac] ^
#16 3.694 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.694 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 3.694 [javac] ^
#16 3.694 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.694 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 3.694 [javac] ^
#16 3.895 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.895 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.895 [javac] ^
#16 3.895 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.895 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.895 [javac] ^
#16 3.995 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.995 [javac] public void setCoreIndex(int no) {
#16 3.995 [javac] ^
#16 3.996 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.996 [javac] public int getCoreIndex() {
#16 3.996 [javac] ^
#16 3.996 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.996 [javac] public int coreIndexToSeries(int index) {
#16 3.996 [javac] ^
#16 3.996 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.996 [javac] public int seriesToCoreIndex(int series) {
#16 3.996 [javac] ^
#16 3.996 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.996 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.996 [javac] ^
#16 3.996 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.996 [javac] return getReader().getCoreMetadataList();
#16 3.996 [javac] ^
#16 3.996 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.996 [javac] return getReader().getCoreIndex();
#16 3.996 [javac] ^
#16 3.996 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.997 [javac] getReader().setCoreIndex(no);
#16 3.997 [javac] ^
#16 3.997 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.997 [javac] return getReader().seriesToCoreIndex(series);
#16 3.997 [javac] ^
#16 3.997 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.997 [javac] return getReader().coreIndexToSeries(index);
#16 3.997 [javac] ^
#16 3.997 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.997 [javac] public void setCoreIndex(int no) {
#16 3.997 [javac] ^
#16 3.997 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.997 [javac] public int getCoreIndex() {
#16 3.997 [javac] ^
#16 3.997 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.997 [javac] public int coreIndexToSeries(int index) {
#16 3.997 [javac] ^
#16 3.997 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.997 [javac] public int seriesToCoreIndex(int series) {
#16 3.997 [javac] ^
#16 3.997 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.998 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.998 [javac] ^
#16 3.998 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.998 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.998 [javac] ^
#16 3.998 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.998 [javac] return reader.getCoreIndex();
#16 3.998 [javac] ^
#16 3.998 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.998 [javac] reader.setCoreIndex(no);
#16 3.998 [javac] ^
#16 3.998 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.998 [javac] return reader.seriesToCoreIndex(series);
#16 3.998 [javac] ^
#16 3.998 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.998 [javac] return reader.coreIndexToSeries(index);
#16 3.998 [javac] ^
#16 4.199 [javac] Note: Some input files use unchecked or unsafe operations.
#16 4.199 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 4.199 [javac] 36 warnings
#16 4.224
#16 4.224 formats-api.jar:
#16 4.224 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 4.248 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.279 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 4.282 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 4.285 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 4.286 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 4.289 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.289
#16 4.289 deps-turbojpeg:
#16 4.289
#16 4.289 jar-turbojpeg:
#16 4.382 [echo] isSnapshot = true
#16 4.535
#16 4.535 init-title:
#16 4.535 [echo] ----------=========== turbojpeg ===========----------
#16 4.535
#16 4.535 init-timestamp:
#16 4.536
#16 4.536 init:
#16 4.536
#16 4.536 copy-resources:
#16 4.536 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.538
#16 4.538 compile:
#16 4.547 [resolver:resolve] Resolving artifacts
#16 4.550 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.753 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 5.429 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [deprecation] finalize() in Object has been deprecated
#16 5.429 [javac] protected void finalize() throws Throwable {
#16 5.429 [javac] ^
#16 5.429 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [deprecation] finalize() in Object has been deprecated
#16 5.429 [javac] super.finalize();
#16 5.429 [javac] ^
#16 5.429 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [deprecation] finalize() in Object has been deprecated
#16 5.429 [javac] protected void finalize() throws Throwable {
#16 5.429 [javac] ^
#16 5.429 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [deprecation] finalize() in Object has been deprecated
#16 5.429 [javac] super.finalize();
#16 5.429 [javac] ^
#16 5.429 [javac] 5 warnings
#16 5.429
#16 5.429 jar:
#16 5.434 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 5.617 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 5.625 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 5.627 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 5.629 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 5.633 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 5.634
#16 5.634 deps-formats-bsd:
#16 5.634
#16 5.634 jar-formats-bsd:
#16 5.747 [echo] isSnapshot = true
#16 5.893
#16 5.893 init-title:
#16 5.893 [echo] ----------=========== formats-bsd ===========----------
#16 5.893
#16 5.893 init-timestamp:
#16 5.893
#16 5.893 init:
#16 5.893
#16 5.893 copy-resources:
#16 5.893 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.896 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.897
#16 5.897 compile:
#16 6.104 [resolver:resolve] Resolving artifacts
#16 6.130 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.338 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 7.439 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.439 [javac] import loci.common.ReflectedUniverse;
#16 7.439 [javac] ^
#16 7.840 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.840 [javac] core.size() != reader.getCoreMetadataList().size())
#16 7.840 [javac] ^
#16 7.840 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.840 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 7.840 [javac] ^
#16 7.840 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.840 [javac] int n = reader.getCoreMetadataList().size();
#16 7.840 [javac] ^
#16 7.840 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.840 [javac] reader.setCoreIndex(coreIndex);
#16 7.840 [javac] ^
#16 7.840 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.840 [javac] int n = reader.getCoreMetadataList().size();
#16 7.840 [javac] ^
#16 7.840 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.840 [javac] int n = reader.getCoreMetadataList().size();
#16 7.840 [javac] ^
#16 7.841 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 7.841 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 7.841 [javac] ^
#16 7.841 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.841 [javac] int n = reader.getCoreMetadataList().size();
#16 7.841 [javac] ^
#16 7.841 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 7.841 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 7.841 [javac] ^
#16 7.841 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.841 [javac] int n = reader.getCoreMetadataList().size();
#16 7.841 [javac] ^
#16 7.841 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.841 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 7.841 [javac] ^
#16 7.842 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.842 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.842 [javac] ^
#16 7.842 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.842 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.842 [javac] ^
#16 7.842 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.842 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 7.842 [javac] ^
#16 7.842 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.842 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 7.842 [javac] ^
#16 7.842 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.842 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 7.842 [javac] ^
#16 7.842 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.842 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 7.842 [javac] ^
#16 7.842 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.842 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 7.842 [javac] ^
#16 7.842 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.842 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 7.842 [javac] ^
#16 7.943 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.943 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 7.943 [javac] ^
#16 8.143 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.143 [javac] BitWriter out = new BitWriter();
#16 8.143 [javac] ^
#16 8.143 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 8.143 [javac] BitWriter out = new BitWriter();
#16 8.143 [javac] ^
#16 8.244 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.244 [javac] return new Double(v);
#16 8.244 [javac] ^
#16 8.945 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2106: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.945 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#16 8.945 [javac] ^
#16 8.945 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2113: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#16 8.945 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#16 8.945 [javac] ^
#16 8.945 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2120: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 8.945 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#16 8.945 [javac] ^
#16 9.045 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.045 [javac] channelNames.put(new Integer(channelNames.size()), value);
#16 9.045 [javac] ^
#16 9.246 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.246 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.246 [javac] ^
#16 9.346 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 9.346 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 9.346 [javac] ^
#16 9.446 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.446 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.446 [javac] ^
#16 9.446 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.446 [javac] protected ReflectedUniverse r;
#16 9.446 [javac] ^
#16 9.446 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.446 [javac] r = new ReflectedUniverse();
#16 9.446 [javac] ^
#16 9.446 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 9.446 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 9.446 [javac] ^
#16 9.446 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 9.447 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 9.447 [javac] ^
#16 9.447 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 9.447 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 9.447 [javac] ^
#16 9.447 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 9.447 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 9.447 [javac] ^
#16 9.447 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 9.447 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 9.447 [javac] ^
#16 9.447 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 9.447 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 9.447 [javac] ^
#16 9.447 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 9.447 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 9.447 [javac] ^
#16 9.447 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 9.447 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 9.447 [javac] ^
#16 9.447 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 9.447 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 9.447 [javac] ^
#16 9.547 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.547 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 9.547 [javac] ^
#16 9.547 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 9.547 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#16 9.547 [javac] ^
#16 9.547 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#16 9.547 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 9.547 [javac] ^
#16 9.547 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#16 9.547 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#16 9.547 [javac] ^
#16 9.648 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 9.648 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 9.648 [javac] ^
#16 9.648 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.648 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#16 9.648 [javac] ^
#16 9.648 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#16 9.648 [javac] result[i] = new Double(readNumber().doubleValue());
#16 9.648 [javac] ^
#16 9.696 [javac] Note: Some input files use unchecked or unsafe operations.
#16 9.696 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 9.696 [javac] 50 warnings
#16 9.697
#16 9.697 formats-bsd.jar:
#16 9.705 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 9.810 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 9.813 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 9.826 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 9.827 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 9.829 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 9.830
#16 9.830 deps-formats-gpl:
#16 9.830
#16 9.830 jar-formats-gpl:
#16 9.918 [echo] isSnapshot = true
#16 10.05
#16 10.05 init-title:
#16 10.05 [echo] ----------=========== formats-gpl ===========----------
#16 10.05
#16 10.05 init-timestamp:
#16 10.05
#16 10.05 init:
#16 10.05
#16 10.05 copy-resources:
#16 10.05 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.06 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.06
#16 10.06 compile:
#16 10.41 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.64 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.67 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.68 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.69 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.70 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.71 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 10.72 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 10.73 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.77 [resolver:resolve] Resolving artifacts
#16 10.78 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 10.78 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 10.83 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 10.83 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 10.84 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 10.84 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 10.86 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.06 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 12.27 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.27 [javac] import loci.formats.codec.BitWriter;
#16 12.27 [javac] ^
#16 12.37 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.37 [javac] import loci.formats.codec.BitWriter;
#16 12.37 [javac] ^
#16 14.37 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 14.37 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 14.37 [javac] ^
#16 14.37 [javac] cast to Object for a varargs call
#16 14.37 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 14.47 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.47 [javac] BitWriter bits = null;
#16 14.47 [javac] ^
#16 14.47 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.47 [javac] bits = new BitWriter(planes[index].length / 8);
#16 14.47 [javac] ^
#16 14.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 14.77 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 14.77 [javac] ^
#16 15.17 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.17 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.17 [javac] ^
#16 15.17 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.17 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 15.17 [javac] ^
#16 15.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:169: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 15.43 [javac] Variable variable = group.findVariable(variableName);
#16 15.43 [javac] ^
#16 15.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:196: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 15.43 [javac] Variable variable = group.findVariable(variableName);
#16 15.43 [javac] ^
#16 15.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 15.43 [javac] List<Attribute> attributes = variable.getAttributes();
#16 15.43 [javac] ^
#16 15.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.43 [javac] String groupName = group.getName();
#16 15.43 [javac] ^
#16 15.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 15.43 [javac] List<Attribute> attributes = group.getAttributes();
#16 15.43 [javac] ^
#16 15.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 15.43 [javac] String variableName = variable.getName();
#16 15.43 [javac] ^
#16 15.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:269: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 15.43 [javac] Group nextParent = parent.findGroup(token);
#16 15.43 [javac] ^
#16 15.43 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 15.43 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 15.43 [javac] ^
#16 15.43 [javac] Note: Some input files use unchecked or unsafe operations.
#16 15.43 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 15.43 [javac] 17 warnings
#16 15.43
#16 15.43 formats-gpl.jar:
#16 15.44 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 15.57 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 15.57 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 15.88 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 15.88 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 15.88 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 15.88
#16 15.88 deps-bio-formats-plugins:
#16 15.88
#16 15.88 jar-bio-formats-plugins:
#16 15.97 [echo] isSnapshot = true
#16 16.10
#16 16.10 init-title:
#16 16.10 [echo] ----------=========== bio-formats_plugins ===========----------
#16 16.10
#16 16.10 init-timestamp:
#16 16.10
#16 16.10 init:
#16 16.10
#16 16.10 copy-resources:
#16 16.10 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.10 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.10
#16 16.10 compile:
#16 16.34 [resolver:resolve] Resolving artifacts
#16 16.36 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.56 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 17.36 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.36 [javac] import loci.common.ReflectedUniverse;
#16 17.36 [javac] ^
#16 17.36 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.36 [javac] import loci.common.ReflectedUniverse;
#16 17.36 [javac] ^
#16 17.86 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 17.86 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 17.86 [javac] ^
#16 18.06 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.06 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.06 [javac] ^
#16 18.06 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.06 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.06 [javac] ^
#16 18.17 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.17 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.17 [javac] ^
#16 18.17 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.17 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.17 [javac] ^
#16 18.53 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 18.53 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 18.53 [javac] 8 warnings
#16 18.53
#16 18.53 bio-formats-plugins.jar:
#16 18.53 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 18.56 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 18.56 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 18.57 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 18.57 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 18.57 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 18.57
#16 18.57 deps-bio-formats-tools:
#16 18.57
#16 18.57 jar-bio-formats-tools:
#16 18.66 [echo] isSnapshot = true
#16 18.79
#16 18.79 init-title:
#16 18.79 [echo] ----------=========== bio-formats-tools ===========----------
#16 18.79
#16 18.79 init-timestamp:
#16 18.79
#16 18.79 init:
#16 18.79
#16 18.79 copy-resources:
#16 18.79 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 18.79
#16 18.79 compile:
#16 19.02 [resolver:resolve] Resolving artifacts
#16 19.03 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.24 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 20.30 [javac] 1 warning
#16 20.30
#16 20.30 bio-formats-tools.jar:
#16 20.30 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 20.31 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 20.31 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 20.34 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 20.34 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 20.34 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 20.34
#16 20.34 deps-tests:
#16 20.34
#16 20.34 jar-tests:
#16 20.42 [echo] isSnapshot = true
#16 20.55
#16 20.55 init-title:
#16 20.55 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 20.55
#16 20.55 init-timestamp:
#16 20.55
#16 20.55 init:
#16 20.55
#16 20.55 copy-resources:
#16 20.55 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 20.55
#16 20.55 compile:
#16 20.83 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 20.91 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 20.92 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.34 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#16 21.77 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#16 21.82 [resolver:resolve] Resolving artifacts
#16 21.83 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 21.87 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 21.88 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.28 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#16 22.66 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 22.66 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.87 [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
#16 23.87 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 23.87 [javac] int index = unflattenedReader.getCoreIndex();
#16 23.87 [javac] ^
#16 23.87 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 23.87 [javac] reader.setCoreIndex(index);
#16 23.87 [javac] ^
#16 24.17 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2259: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.17 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.17 [javac] ^
#16 24.17 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2425: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.17 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.17 [javac] ^
#16 24.46 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.46 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 24.46 [javac] ^
#16 24.46 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.46 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 24.46 [javac] ^
#16 24.46 [javac] Note: Some input files use unchecked or unsafe operations.
#16 24.46 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 24.46 [javac] 7 warnings
#16 24.46
#16 24.46 tests.jar:
#16 24.47 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 24.48 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 24.48 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 24.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 24.49 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.49 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 24.49
#16 24.49 jars:
#16 24.49
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#16 24.49
#16 24.49 deps-formats-api:
#16 24.53 [echo] isSnapshot = true
#16 24.57
#16 24.57 install-pom:
#16 24.69 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 24.70 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.70 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 24.72
#16 24.72 jar-formats-api:
#16 24.80 [echo] isSnapshot = true
#16 24.92
#16 24.92 init-title:
#16 24.93 [echo] ----------=========== formats-api ===========----------
#16 24.93
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#16 24.93
#16 24.93 compile:
#16 25.06 [resolver:resolve] Resolving artifacts
#16 25.06
#16 25.06 formats-api.jar:
#16 25.08 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 25.08 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 25.08 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 25.09 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.09 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 25.09
#16 25.09 deps-turbojpeg:
#16 25.09
#16 25.09 jar-turbojpeg:
#16 25.16 [echo] isSnapshot = true
#16 25.29
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#16 25.29 [echo] ----------=========== turbojpeg ===========----------
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#16 25.29 [resolver:resolve] Resolving artifacts
#16 25.30
#16 25.30 jar:
#16 25.30 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 25.31 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 25.31 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 25.31 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.31 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 25.31
#16 25.31 deps-formats-bsd:
#16 25.31
#16 25.31 jar-formats-bsd:
#16 25.39 [echo] isSnapshot = true
#16 25.51
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#16 25.51 [echo] ----------=========== formats-bsd ===========----------
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#16 25.71 [resolver:resolve] Resolving artifacts
#16 25.73
#16 25.73 formats-bsd.jar:
#16 25.76 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 25.76 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 25.77 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 25.77 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.77 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 25.77
#16 25.77 deps-formats-gpl:
#16 25.77
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#16 25.85 [echo] isSnapshot = true
#16 25.97
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#16 25.97 [echo] ----------=========== formats-gpl ===========----------
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#16 26.19 formats-gpl.jar:
#16 26.23 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 26.23 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 26.23 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 26.23 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.24 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 26.24
#16 26.24 deps-bio-formats-plugins:
#16 26.24
#16 26.24 jar-bio-formats-plugins:
#16 26.32 [echo] isSnapshot = true
#16 26.44
#16 26.44 init-title:
#16 26.44 [echo] ----------=========== bio-formats_plugins ===========----------
#16 26.44
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#16 26.67 [resolver:resolve] Resolving artifacts
#16 26.68
#16 26.68 bio-formats-plugins.jar:
#16 26.69 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 26.70 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 26.70 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 26.70 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.70 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 26.70
#16 26.70 deps-bio-formats-tools:
#16 26.70
#16 26.70 jar-bio-formats-tools:
#16 26.79 [echo] isSnapshot = true
#16 26.92
#16 26.92 init-title:
#16 26.92 [echo] ----------=========== bio-formats-tools ===========----------
#16 26.92
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#16 26.92
#16 26.92 compile:
#16 27.15 [resolver:resolve] Resolving artifacts
#16 27.16
#16 27.16 bio-formats-tools.jar:
#16 27.16 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 27.17 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 27.17 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 27.17 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.17 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 27.17
#16 27.17 deps-tests:
#16 27.17
#16 27.17 jar-tests:
#16 27.25 [echo] isSnapshot = true
#16 27.38
#16 27.38 init-title:
#16 27.38 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 27.38
#16 27.38 init-timestamp:
#16 27.38
#16 27.38 init:
#16 27.38
#16 27.38 copy-resources:
#16 27.38
#16 27.38 compile:
#16 27.60 [resolver:resolve] Resolving artifacts
#16 27.61
#16 27.61 tests.jar:
#16 27.62 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 27.62 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 27.62 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 27.63 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 27.63 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 27.63
#16 27.63 jars:
#16 27.63
#16 27.63 tools:
#16 27.63 [echo] ----------=========== bioformats_package ===========----------
#16 27.71 [echo] isSnapshot = true
#16 27.92
#16 27.92 init-timestamp:
#16 27.92
#16 27.92 bundle:
#16 28.16 [resolver:resolve] Resolving artifacts
#16 28.16 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.19 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.25-SNAPSHOT/ome-common-6.0.25-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.21 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.24 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.25 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.31 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.33 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.38 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.39 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.61 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.66 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.68 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.74 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.75 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.76 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.76 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.93 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.41 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.41 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.42 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.42 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.51 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.51 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.52 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.58 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.63 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.65 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.66 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.80 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.83 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.90 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.94 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.94 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.98 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.00 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.44 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.46 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.50 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.56 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.67 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.69 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.71 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.71 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.95 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.02 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.08 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.26 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.28 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.28 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.41 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.42 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.90 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.92 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.03 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.09 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.10 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.11 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.17 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.33 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.35 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.36 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.37 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.38 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.41 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.81 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.92 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.23 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 38.71 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.26 [resolver:install] Using default POM (ome:bioformats_package:8.1.0-SNAPSHOT)
#16 39.27 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.pom
#16 39.27 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.jar
#16 39.30 [resolver:install] Installing ome:bioformats_package:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 39.31 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 39.31
#16 39.31 BUILD SUCCESSFUL
#16 39.31 Total time: 38 seconds
#16 DONE 40.2s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.4s done
#18 writing image sha256:ffc2aea3bda1534854ad0a521a3245b7d69ac5605ed8aa7292f53128655679f9 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.4s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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