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Started by upstream project "BIOFORMATS-test-repo" build number 271 originally caused by: Started by upstream project "Trigger" build number 293 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins6153814078191322064.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42632_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:21:36,079 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:21:36,080 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:21:36,080 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:36,081 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:36,081 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:21:36,082 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:21:36,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:21:36,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:36,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:36,083 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:21:36,083 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:21:36,084 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:21:36,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:21:36,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:21:36,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:21:36,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:21:36,278 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:21:36,278 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:21:36,278 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:21:36,279 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:21:36,279 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:21:36,280 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:21:36,280 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-28 00:21:36,288] [main] java.version = 21 [testng] 00:21:36,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:21:36,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,332 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-28_00-21-36.log] [testng] 00:21:36,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-28 00:21:36,335] [main] testng.directory = /data [testng] [2024-11-28 00:21:36,335] [main] testng.configDirectory = /config [testng] [2024-11-28 00:21:36,343] [main] testng.multiplier = 1.0 [testng] [2024-11-28 00:21:36,344] [main] testng.in-memory = false [testng] [2024-11-28 00:21:36,344] [main] testng.allow-missing = false [testng] [2024-11-28 00:21:36,344] [main] user.language = en [testng] [2024-11-28 00:21:36,344] [main] user.country = ${user.country} [testng] [2024-11-28 00:21:36,344] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-28 00:21:37,018] [main] ---------------------------------------- [testng] [2024-11-28 00:21:37,018] [main] Total files: 36 [testng] [2024-11-28 00:21:37,018] [main] Scan time: 0.674 s (18 ms/file) [testng] [2024-11-28 00:21:37,019] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-28 00:21:38,124] [pool-1-thread-1] Initializing /data/generated/mri-stack24.pcx: [testng] 00:21:38,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:21:38,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:38,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-28_00-21-38.log] [testng] 00:21:38,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2557729c - End of configuration. [testng] [2024-11-28 00:21:38,145] [pool-1-thread-12] Initializing /data/generated/mri-stack6.pcx: [testng] 00:21:38,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:21:38,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:38,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-28_00-21-38.log] [testng] 00:21:38,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a83fbe7 - End of configuration. [testng] [2024-11-28 00:21:38,163] [pool-1-thread-11] Initializing /data/generated/mri-stack22.pcx: [testng] 00:21:38,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:21:38,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:38,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-28_00-21-38.log] [testng] 00:21:38,164 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18a26865 - End of configuration. [testng] [2024-11-28 00:21:38,176] [pool-1-thread-10] Initializing /data/generated/mri-stack25.pcx: [testng] 00:21:38,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:21:38,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:38,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-28_00-21-38.log] [testng] 00:21:38,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63bd9b57 - End of configuration. [testng] [2024-11-28 00:21:38,188] [pool-1-thread-9] Initializing /data/generated/mri-stack12.pcx: [testng] 00:21:38,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:21:38,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:38,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-28_00-21-38.log] [testng] 00:21:38,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b1076e3 - End of configuration. [testng] [2024-11-28 00:21:38,201] [pool-1-thread-8] Initializing /data/generated/mri-stack4.pcx: [testng] 00:21:38,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:21:38,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:38,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-28_00-21-38.log] [testng] 00:21:38,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f6cff2c - End of configuration. [testng] [2024-11-28 00:21:38,214] [pool-1-thread-7] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] 00:21:38,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:21:38,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:38,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-28_00-21-38.log] [testng] 00:21:38,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b11b4a5 - End of configuration. [testng] [2024-11-28 00:21:38,230] [pool-1-thread-6] Initializing /data/generated/mri-stack20.pcx: [testng] 00:21:38,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:21:38,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:38,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-28_00-21-38.log] [testng] 00:21:38,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d7b7883 - End of configuration. [testng] [2024-11-28 00:21:38,242] [pool-1-thread-5] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 00:21:38,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:21:38,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:38,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-28_00-21-38.log] [testng] 00:21:38,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a89e1c - End of configuration. [testng] [2024-11-28 00:21:38,260] [pool-1-thread-4] Initializing /data/generated/mri-stack5.pcx: [testng] 00:21:38,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:21:38,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:38,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-28_00-21-38.log] [testng] 00:21:38,261 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bc10b8 - End of configuration. [testng] [2024-11-28 00:21:38,271] [pool-1-thread-3] Initializing /data/generated/mri-stack2.pcx: [testng] 00:21:38,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:21:38,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:38,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-28_00-21-38.log] [testng] 00:21:38,273 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1070fb26 - End of configuration. [testng] [2024-11-28 00:21:38,283] [pool-1-thread-2] Initializing /data/generated/mri-stack19.pcx: [testng] 00:21:38,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:21:38,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:38,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-28_00-21-38.log] [testng] 00:21:38,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a19f1cf - End of configuration. [testng] [2024-11-28 00:21:41,525] [pool-1-thread-6] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-11-28 00:21:41,538] [pool-1-thread-9] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-11-28 00:21:41,552] [pool-1-thread-12] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-11-28 00:21:41,563] [pool-1-thread-8] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-11-28 00:21:41,574] [pool-1-thread-1] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-11-28 00:21:41,585] [pool-1-thread-2] Initializing /data/generated/mri-stack0.pcx: [testng] [2024-11-28 00:21:41,598] [pool-1-thread-3] Initializing /data/generated/mri-stack15.pcx: [testng] [2024-11-28 00:21:41,611] [pool-1-thread-10] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2024-11-28 00:21:41,627] [pool-1-thread-11] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-11-28 00:21:41,639] [pool-1-thread-4] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-11-28 00:21:41,652] [pool-1-thread-7] Initializing /data/generated/mri-stack7.pcx: [testng] [2024-11-28 00:21:41,661] [pool-1-thread-5] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-11-28 00:21:42,895] [pool-1-thread-8] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-11-28 00:21:42,955] [pool-1-thread-6] Initializing /data/generated/mri-stack13.pcx: [testng] [2024-11-28 00:21:43,017] [pool-1-thread-7] Initializing /data/generated/mri-stack3.pcx: [testng] [2024-11-28 00:21:43,051] [pool-1-thread-11] Initializing /data/generated/mri-stack17.pcx: [testng] [2024-11-28 00:21:43,092] [pool-1-thread-4] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-11-28 00:21:43,119] [pool-1-thread-3] Initializing /data/generated/mri-stack8.pcx: [testng] [2024-11-28 00:21:43,144] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx: [testng] [2024-11-28 00:21:43,170] [pool-1-thread-5] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-11-28 00:21:43,196] [pool-1-thread-2] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-11-28 00:21:43,212] [pool-1-thread-1] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-11-28 00:21:43,552] [pool-1-thread-9] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 seconds Finished: SUCCESS