![[Jenkins]](/jenkins/static/9161e9ff/images/svgs/logo.svg){kind=logo}
Started by upstream project "Trigger" build number 634 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-python-superbuild-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.39.2' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-python-superbuild-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.39.2' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision b68c3cf06205611a43f501104408df0df16649d6 (refs/remotes/origin/master) Commit message: "Merge pull request #332 from ome/dependabot/submodules/omero-py-780876c" > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-python-superbuild-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-python-superbuild.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-python-superbuild.git > git --version # timeout=10 > git --version # 'git version 2.43.5' > git fetch --tags --force --progress -- https://github.com/ome/omero-python-superbuild.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f b68c3cf06205611a43f501104408df0df16649d6 # timeout=10 > git rev-list --no-walk b68c3cf06205611a43f501104408df0df16649d6 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-py.url # timeout=10 > git config -f .gitmodules --get submodule.omero-py.path # timeout=10 > git config --get submodule.omero-web.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web.path # timeout=10 > git config --get submodule.omero-marshal.url # timeout=10 > git config -f .gitmodules --get submodule.omero-marshal.path # timeout=10 > git config --get submodule.omero-dropbox.url # timeout=10 > git config -f .gitmodules --get submodule.omero-dropbox.path # timeout=10 > git config --get submodule.omero-scripts.url # timeout=10 > git config -f .gitmodules --get submodule.omero-scripts.path # timeout=10 > git submodule update --init --recursive omero-py # timeout=10 > git submodule update --init --recursive omero-web # timeout=10 > git submodule update --init --recursive omero-marshal # timeout=10 > git submodule update --init --recursive omero-dropbox # timeout=10 > git submodule update --init --recursive omero-scripts # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 560 [Pipeline] sh + pushd build ~/workspace/OMERO-python-superbuild-push/build ~/workspace/OMERO-python-superbuild-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-python-superbuild-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-python-superbuild-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-python-superbuild-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.2-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.2 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel.yaml-0.18.15-py3-none-any.whl.metadata (25 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.0-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (9.4 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-46.0.1-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.23-py3-none-any.whl.metadata (993 bytes) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (36 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2025.8.3-py3-none-any.whl.metadata (2.4 kB) Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) Using cached ruamel.yaml.clib-0.2.14-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.8.1-py3-none-any.whl (432 kB) Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB) Using cached cryptography-46.0.1-cp311-abi3-manylinux_2_34_x86_64.whl (4.6 MB) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (215 kB) Using cached pynacl-1.6.0-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.32.5-py3-none-any.whl (64 kB) Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB) Using cached idna-3.10-py3-none-any.whl (70 kB) Using cached certifi-2025.8.3-py3-none-any.whl (161 kB) Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-2.23-py3-none-any.whl (118 kB) Using cached ruamel.yaml-0.18.15-py3-none-any.whl (119 kB) Using cached ruamel.yaml.clib-0.2.14-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml, requests, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.8.1 PyYAML-6.0.3 certifi-2025.8.3 cffi-2.0.0 charset_normalizer-3.4.3 cryptography-46.0.1 future-1.0.0 idna-3.10 pycparser-2.23 pyjwt-2.10.1 pynacl-1.6.0 requests-2.32.5 ruamel.yaml-0.18.15 ruamel.yaml.clib-0.2.14 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-python-superbuild.git + BASE_REPO=omero-python-superbuild.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-python-superbuild-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-python-superbuild-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2025-09-29 00:18:56,879 [ scc.config] DEBUG Found github.token 2025-09-29 00:18:56,881 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-09-29 00:18:57,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:18:57,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:18:57,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-09-29 00:18:57,912 [ scc.gh] DEBUG 4387 remaining from 5000 (Reset at 01:09 2025-09-29 00:18:57,913 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-29 00:18:57,915 [ scc.git] DEBUG Check current status 2025-09-29 00:18:57,915 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-29 00:18:57,917 [ scc.git] DEBUG b68c3cf Merge pull request #332 from ome/dependabot/submodules/omero-py-780876c 2025-09-29 00:18:57,918 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-29 00:18:57,955 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5) 2025-09-29 00:18:57,958 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66) 2025-09-29 00:18:57,966 [ scc.git] DEBUG 780876c5f6b48c327ef1685b377bac2c3cc46797 omero-py (v5.21.1-15-g780876c5) 2025-09-29 00:18:57,970 [ scc.git] DEBUG 03b9116196e1a799dd18a666559613d912be01a5 omero-scripts (v5.9.1-3-g03b9116) 2025-09-29 00:18:57,974 [ scc.git] DEBUG 2a7c4d2e3a98d90b3345039bf70dcc0d96b36135 omero-web (v5.29.2-1-g2a7c4d2e3) 2025-09-29 00:18:57,976 [ scc.config] DEBUG Found remote.origin.url 2025-09-29 00:18:58,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None 2025-09-29 00:18:58,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-29 00:18:59,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-29 00:18:59,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-29 00:19:00,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-29 00:19:00,164 [ scc.git] DEBUG Resetting... 2025-09-29 00:19:00,165 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-09-29 00:19:00,168 [ scc.git] DEBUG HEAD is now at b68c3cf Merge pull request #332 from ome/dependabot/submodules/omero-py-780876c 2025-09-29 00:19:00,168 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-09-29 00:19:00,221 [ scc.git] DEBUG Check current status 2025-09-29 00:19:00,221 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-29 00:19:00,223 [ scc.git] DEBUG b68c3cf Merge pull request #332 from ome/dependabot/submodules/omero-py-780876c 2025-09-29 00:19:00,223 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-29 00:19:00,259 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5) 2025-09-29 00:19:00,262 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66) 2025-09-29 00:19:00,269 [ scc.git] DEBUG 780876c5f6b48c327ef1685b377bac2c3cc46797 omero-py (v5.21.1-15-g780876c5) 2025-09-29 00:19:00,273 [ scc.git] DEBUG 03b9116196e1a799dd18a666559613d912be01a5 omero-scripts (v5.9.1-3-g03b9116) 2025-09-29 00:19:00,277 [ scc.git] DEBUG 2a7c4d2e3a98d90b3345039bf70dcc0d96b36135 omero-web (v5.29.2-1-g2a7c4d2e3) 2025-09-29 00:19:00,277 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-09-29 00:19:00,277 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-09-29 00:19:00,277 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-09-29 00:19:00,277 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-09-29 00:19:00,277 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-09-29 00:19:00,277 [ scc.repo] DEBUG ## PRs found: 2025-09-29 00:19:00,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 None 2025-09-29 00:19:01,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/issues/333 HTTP/1.1" 200 None 2025-09-29 00:19:01,133 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-29 00:19:01,133 [ scc.repo] DEBUG - PR 333 dependabot[bot] 'Bump omero-marshal from `6d44f66` to `57934f0`' 2025-09-29 00:19:01,133 [ scc.repo] DEBUG ## Branches found: 2025-09-29 00:19:01,133 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:19:01,133 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:01,135 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-29 00:19:01,137 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-29 00:19:01,137 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-29 00:19:01,139 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-29 00:19:01,142 [ scc.git] DEBUG Already up to date. 2025-09-29 00:19:01,142 [ scc.git] DEBUG Calling 'git fetch origin pull/333/head' 2025-09-29 00:19:01,443 [ scc.git] DEBUG From https://github.com/ome/omero-python-superbuild 2025-09-29 00:19:01,443 [ scc.git] DEBUG * branch refs/pull/333/head -> FETCH_HEAD 2025-09-29 00:19:01,449 [ scc.git] DEBUG ## Unique users: [] 2025-09-29 00:19:01,449 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:19:01,449 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:01,451 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4e34f39c88ec1cbd7ec42af90e516d68f02a1ba9' 2025-09-29 00:19:01,453 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:01,455 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 333 (Bump omero-marshal from `6d44f66` to `57934f0`) 4e34f39c88ec1cbd7ec42af90e516d68f02a1ba9' 2025-09-29 00:19:01,462 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:19:01,464 [ scc.git] DEBUG omero-marshal | 2 +- 2025-09-29 00:19:01,464 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-29 00:19:01,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:19:01,615 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-29 00:19:01,661 [ scc.git] DEBUG Submodule path 'omero-marshal': checked out '57934f0fd75d0a3091d06b5e943094a27c56f328' 2025-09-29 00:19:01,661 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:19:01,661 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:01,663 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-29 00:19:01,692 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fd68723c590> has no local changes 2025-09-29 00:19:01,692 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-python-superbuild Already up to date. Merged PRs: - PR 333 dependabot[bot] 'Bump omero-marshal from `6d44f66` to `57934f0`' Generated by OMERO-python-superbuild-push#532 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/532/)' 2025-09-29 00:19:01,713 [ scc.git] DEBUG [detached HEAD 238b4c5] merge master -Dorg -Snone 2025-09-29 00:19:01,713 [ scc.merge] INFO Repository: ome/omero-python-superbuild 2025-09-29 00:19:01,713 [ scc.merge] INFO Already up to date. 2025-09-29 00:19:01,713 [ scc.merge] INFO 2025-09-29 00:19:01,713 [ scc.merge] INFO Merged PRs: 2025-09-29 00:19:01,713 [ scc.merge] INFO - PR 333 dependabot[bot] 'Bump omero-marshal from `6d44f66` to `57934f0`' 2025-09-29 00:19:01,713 [ scc.merge] INFO 2025-09-29 00:19:01,713 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-09-29 00:19:01,713 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'omero-dropbox' Synchronizing submodule url for 'omero-marshal' Synchronizing submodule url for 'omero-py' Synchronizing submodule url for 'omero-scripts' Synchronizing submodule url for 'omero-web' Merge all submodules using repository configuration: base-branch: master submodules: omero-scripts: base-branch: develop 2025-09-29 00:19:03,621 [ scc.config] DEBUG Found github.token 2025-09-29 00:19:03,622 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-09-29 00:19:03,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:19:04,201 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:19:04,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-09-29 00:19:04,610 [ scc.gh] DEBUG 4377 remaining from 5000 (Reset at 01:09 2025-09-29 00:19:04,611 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-29 00:19:04,613 [ scc.git] DEBUG Check current status 2025-09-29 00:19:04,613 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-29 00:19:04,615 [ scc.git] DEBUG 238b4c5 merge master -Dorg -Snone 2025-09-29 00:19:04,616 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-29 00:19:04,653 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5) 2025-09-29 00:19:04,656 [ scc.git] DEBUG 57934f0fd75d0a3091d06b5e943094a27c56f328 omero-marshal (v0.9.0-15-g57934f0) 2025-09-29 00:19:04,663 [ scc.git] DEBUG 780876c5f6b48c327ef1685b377bac2c3cc46797 omero-py (v5.21.1-15-g780876c5) 2025-09-29 00:19:04,667 [ scc.git] DEBUG 03b9116196e1a799dd18a666559613d912be01a5 omero-scripts (v5.9.1-3-g03b9116) 2025-09-29 00:19:04,670 [ scc.git] DEBUG 2a7c4d2e3a98d90b3345039bf70dcc0d96b36135 omero-web (v5.29.2-1-g2a7c4d2e3) 2025-09-29 00:19:04,673 [ scc.config] DEBUG Found remote.origin.url 2025-09-29 00:19:04,673 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2025-09-29 00:19:04,674 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-scripts: base-branch: develop 2025-09-29 00:19:05,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None 2025-09-29 00:19:05,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-29 00:19:05,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-29 00:19:06,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-29 00:19:06,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-29 00:19:06,794 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-29 00:19:06,837 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox 2025-09-29 00:19:06,837 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-29 00:19:06,839 [ scc.git] DEBUG Check current status 2025-09-29 00:19:06,839 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-29 00:19:06,842 [ scc.git] DEBUG 01fa0c5 Merge pull request #24 from jburel/build 2025-09-29 00:19:06,842 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-29 00:19:06,878 [ scc.config] DEBUG Found remote.origin.url 2025-09-29 00:19:07,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox HTTP/1.1" 200 None 2025-09-29 00:19:07,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-29 00:19:08,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-29 00:19:08,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-29 00:19:09,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-29 00:19:09,036 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-29 00:19:09,073 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-29 00:19:09,073 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal 2025-09-29 00:19:09,073 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-29 00:19:09,075 [ scc.git] DEBUG Check current status 2025-09-29 00:19:09,075 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-29 00:19:09,077 [ scc.git] DEBUG 57934f0 Merge pull request #85 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 2025-09-29 00:19:09,077 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-29 00:19:09,113 [ scc.config] DEBUG Found remote.origin.url 2025-09-29 00:19:09,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal HTTP/1.1" 200 None 2025-09-29 00:19:10,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-29 00:19:10,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-29 00:19:10,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-29 00:19:11,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-29 00:19:11,277 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-29 00:19:11,313 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-29 00:19:11,314 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py 2025-09-29 00:19:11,314 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-29 00:19:11,315 [ scc.git] DEBUG Check current status 2025-09-29 00:19:11,316 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-29 00:19:11,318 [ scc.git] DEBUG 780876c5 Merge pull request #443 from sbesson/gateway_tests_fake 2025-09-29 00:19:11,318 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-29 00:19:11,354 [ scc.config] DEBUG Found remote.origin.url 2025-09-29 00:19:11,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py HTTP/1.1" 200 None 2025-09-29 00:19:12,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-29 00:19:12,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-29 00:19:13,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-29 00:19:13,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-29 00:19:13,616 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-29 00:19:13,652 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-29 00:19:13,653 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts 2025-09-29 00:19:13,653 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-29 00:19:13,655 [ scc.git] DEBUG Check current status 2025-09-29 00:19:13,655 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-29 00:19:13,657 [ scc.git] DEBUG 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 2025-09-29 00:19:13,657 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-29 00:19:13,694 [ scc.config] DEBUG Found remote.origin.url 2025-09-29 00:19:13,695 [ scc.git] DEBUG Repository configuration: base-branch: develop 2025-09-29 00:19:14,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts HTTP/1.1" 200 None 2025-09-29 00:19:14,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-29 00:19:15,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-29 00:19:15,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-29 00:19:15,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-29 00:19:15,871 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-29 00:19:15,907 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-29 00:19:15,908 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web 2025-09-29 00:19:15,908 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-29 00:19:15,909 [ scc.git] DEBUG Check current status 2025-09-29 00:19:15,910 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-29 00:19:15,912 [ scc.git] DEBUG 2a7c4d2e3 Bump version: 5.29.2 → 5.29.3.dev0 2025-09-29 00:19:15,912 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-29 00:19:15,949 [ scc.config] DEBUG Found remote.origin.url 2025-09-29 00:19:16,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web HTTP/1.1" 200 None 2025-09-29 00:19:16,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-29 00:19:17,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-29 00:19:17,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-29 00:19:18,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-29 00:19:18,046 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-29 00:19:18,082 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-29 00:19:18,082 [ scc.git] DEBUG Resetting... 2025-09-29 00:19:18,082 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-09-29 00:19:18,085 [ scc.git] DEBUG HEAD is now at 238b4c5 merge master -Dorg -Snone 2025-09-29 00:19:18,085 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-09-29 00:19:18,133 [ scc.git] DEBUG Check current status 2025-09-29 00:19:18,133 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-29 00:19:18,135 [ scc.git] DEBUG 238b4c5 merge master -Dorg -Snone 2025-09-29 00:19:18,135 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-29 00:19:18,172 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5) 2025-09-29 00:19:18,174 [ scc.git] DEBUG 57934f0fd75d0a3091d06b5e943094a27c56f328 omero-marshal (v0.9.0-15-g57934f0) 2025-09-29 00:19:18,182 [ scc.git] DEBUG 780876c5f6b48c327ef1685b377bac2c3cc46797 omero-py (v5.21.1-15-g780876c5) 2025-09-29 00:19:18,186 [ scc.git] DEBUG 03b9116196e1a799dd18a666559613d912be01a5 omero-scripts (v5.9.1-3-g03b9116) 2025-09-29 00:19:18,190 [ scc.git] DEBUG 2a7c4d2e3a98d90b3345039bf70dcc0d96b36135 omero-web (v5.29.2-1-g2a7c4d2e3) 2025-09-29 00:19:18,190 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-09-29 00:19:18,190 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-09-29 00:19:18,191 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-09-29 00:19:18,191 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-09-29 00:19:18,191 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-09-29 00:19:18,191 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2025-09-29 00:19:18,191 [ scc.repo] DEBUG ## PRs found: 2025-09-29 00:19:18,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 None 2025-09-29 00:19:19,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/issues/333 HTTP/1.1" 200 None 2025-09-29 00:19:19,049 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-29 00:19:19,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/4e34f39c88ec1cbd7ec42af90e516d68f02a1ba9 HTTP/1.1" 200 None 2025-09-29 00:19:20,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/4e34f39c88ec1cbd7ec42af90e516d68f02a1ba9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:19:20,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/4e34f39c88ec1cbd7ec42af90e516d68f02a1ba9 HTTP/1.1" 200 None 2025-09-29 00:19:21,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/statuses/4e34f39c88ec1cbd7ec42af90e516d68f02a1ba9?per_page=1 HTTP/1.1" 200 2 2025-09-29 00:19:21,088 [ scc.repo] DEBUG - PR 333 dependabot[bot] 'Bump omero-marshal from `6d44f66` to `57934f0`' 2025-09-29 00:19:21,088 [ scc.repo] DEBUG ## Branches found: 2025-09-29 00:19:21,089 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:19:21,089 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:21,091 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-29 00:19:21,093 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-29 00:19:21,093 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-29 00:19:21,095 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-29 00:19:21,098 [ scc.git] DEBUG Already up to date. 2025-09-29 00:19:21,098 [ scc.git] DEBUG Calling 'git fetch origin pull/333/head' 2025-09-29 00:19:21,384 [ scc.git] DEBUG From https://github.com/ome/omero-python-superbuild 2025-09-29 00:19:21,385 [ scc.git] DEBUG * branch refs/pull/333/head -> FETCH_HEAD 2025-09-29 00:19:21,390 [ scc.git] DEBUG ## Unique users: [] 2025-09-29 00:19:21,390 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:19:21,390 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:21,392 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4e34f39c88ec1cbd7ec42af90e516d68f02a1ba9' 2025-09-29 00:19:21,394 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:21,396 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 333 (Bump omero-marshal from `6d44f66` to `57934f0`) 4e34f39c88ec1cbd7ec42af90e516d68f02a1ba9' 2025-09-29 00:19:21,398 [ scc.git] DEBUG Already up to date. 2025-09-29 00:19:21,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:19:21,549 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-29 00:19:21,587 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:19:21,587 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:21,589 [ scc.repo] DEBUG ## PRs found: 2025-09-29 00:19:22,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/pulls HTTP/1.1" 200 None 2025-09-29 00:19:22,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/26 HTTP/1.1" 200 None 2025-09-29 00:19:22,562 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-29 00:19:23,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/38aa63d7d4014725060e4ecaa159922370485c5a HTTP/1.1" 200 None 2025-09-29 00:19:23,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/38aa63d7d4014725060e4ecaa159922370485c5a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:19:24,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/38aa63d7d4014725060e4ecaa159922370485c5a/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-29 00:19:24,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/38aa63d7d4014725060e4ecaa159922370485c5a HTTP/1.1" 200 None 2025-09-29 00:19:25,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/statuses/38aa63d7d4014725060e4ecaa159922370485c5a?per_page=1 HTTP/1.1" 200 2 2025-09-29 00:19:25,172 [ scc.repo] DEBUG - PR 26 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-29 00:19:25,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16 HTTP/1.1" 200 None 2025-09-29 00:19:26,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16/comments HTTP/1.1" 200 None 2025-09-29 00:19:26,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None 2025-09-29 00:19:27,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:19:27,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None 2025-09-29 00:19:28,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/statuses/f802993eba0b6514d0e31f0f7d5b996ffb54b452?per_page=1 HTTP/1.1" 200 2 2025-09-29 00:19:28,094 [ scc.repo] DEBUG - PR 16 joshmoore 'Review all instances of whitelist/blacklist' 2025-09-29 00:19:28,094 [ scc.repo] DEBUG ## Branches found: 2025-09-29 00:19:28,094 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox 2025-09-29 00:19:28,094 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:19:28,095 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:28,097 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-29 00:19:28,099 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-29 00:19:28,099 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-29 00:19:28,102 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-29 00:19:28,104 [ scc.git] DEBUG Already up to date. 2025-09-29 00:19:28,104 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2025-09-29 00:19:28,408 [ scc.git] DEBUG From https://github.com/ome/omero-dropbox 2025-09-29 00:19:28,408 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2025-09-29 00:19:28,412 [ scc.git] DEBUG Calling 'git fetch origin pull/26/head' 2025-09-29 00:19:28,753 [ scc.git] DEBUG From https://github.com/ome/omero-dropbox 2025-09-29 00:19:28,753 [ scc.git] DEBUG * branch refs/pull/26/head -> FETCH_HEAD 2025-09-29 00:19:28,757 [ scc.git] DEBUG ## Unique users: [] 2025-09-29 00:19:28,757 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:19:28,757 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:28,759 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f802993eba0b6514d0e31f0f7d5b996ffb54b452' 2025-09-29 00:19:28,762 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:28,764 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Review all instances of whitelist/blacklist) f802993eba0b6514d0e31f0f7d5b996ffb54b452' 2025-09-29 00:19:28,775 [ scc.git] DEBUG Auto-merging src/fsAbstractPlatformMonitor.py 2025-09-29 00:19:28,775 [ scc.git] DEBUG Auto-merging src/fsDirectory.py 2025-09-29 00:19:28,775 [ scc.git] DEBUG Auto-merging src/fsDropBox.py 2025-09-29 00:19:28,775 [ scc.git] DEBUG Auto-merging src/fsLists.py 2025-09-29 00:19:28,775 [ scc.git] DEBUG Auto-merging src/fsMac-10-5-Monitor.py 2025-09-29 00:19:28,775 [ scc.git] DEBUG Auto-merging src/fsMonitor.py 2025-09-29 00:19:28,775 [ scc.git] DEBUG Auto-merging src/fsMonitorServer.py 2025-09-29 00:19:28,775 [ scc.git] DEBUG Auto-merging src/fsPyinotifyMonitor.py 2025-09-29 00:19:28,775 [ scc.git] DEBUG Auto-merging src/fsWin-XP-Monitor.py 2025-09-29 00:19:28,776 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:19:28,780 [ scc.git] DEBUG src/fsAbstractPlatformMonitor.py | 6 +++--- 2025-09-29 00:19:28,780 [ scc.git] DEBUG src/fsDirectory.py | 46 ++++++++++++++++++++-------------------- 2025-09-29 00:19:28,780 [ scc.git] DEBUG src/fsDropBox.py | 24 ++++++++++----------- 2025-09-29 00:19:28,780 [ scc.git] DEBUG src/fsLists.py | 14 ++++++------ 2025-09-29 00:19:28,780 [ scc.git] DEBUG src/fsMac-10-5-Monitor.py | 10 ++++----- 2025-09-29 00:19:28,780 [ scc.git] DEBUG src/fsMonitor.py | 24 ++++++++++----------- 2025-09-29 00:19:28,780 [ scc.git] DEBUG src/fsMonitorServer.py | 10 ++++----- 2025-09-29 00:19:28,780 [ scc.git] DEBUG src/fsPyinotifyMonitor.py | 8 +++---- 2025-09-29 00:19:28,780 [ scc.git] DEBUG src/fsWin-XP-Monitor.py | 20 ++++++++--------- 2025-09-29 00:19:28,780 [ scc.git] DEBUG 9 files changed, 81 insertions(+), 81 deletions(-) 2025-09-29 00:19:28,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:19:28,919 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38aa63d7d4014725060e4ecaa159922370485c5a' 2025-09-29 00:19:28,922 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:28,924 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 26 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38aa63d7d4014725060e4ecaa159922370485c5a' 2025-09-29 00:19:28,932 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:19:28,934 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-29 00:19:28,934 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-29 00:19:29,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:19:29,308 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-29 00:19:29,343 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:19:29,343 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:29,345 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-29 00:19:29,381 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-29 00:19:29,384 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed17853a90> has no local changes 2025-09-29 00:19:29,384 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-dropbox Already up to date. Merged PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' - PR 26 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-python-superbuild-push#532 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/532/)' 2025-09-29 00:19:29,389 [ scc.git] DEBUG [detached HEAD ef361d1] merge master -Dorg -Ssuccess-only 2025-09-29 00:19:29,390 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-29 00:19:29,390 [ scc.repo] DEBUG ## PRs found: 2025-09-29 00:19:29,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/pulls HTTP/1.1" 200 None 2025-09-29 00:19:30,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/84 HTTP/1.1" 200 None 2025-09-29 00:19:30,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/84/comments HTTP/1.1" 200 None 2025-09-29 00:19:31,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69 HTTP/1.1" 200 None 2025-09-29 00:19:31,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69/comments HTTP/1.1" 200 None 2025-09-29 00:19:32,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None 2025-09-29 00:19:32,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:19:33,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None 2025-09-29 00:19:33,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/statuses/1cbe0bebb081ffedb835c966ecb434d33502ceca?per_page=1 HTTP/1.1" 200 2 2025-09-29 00:19:33,625 [ scc.repo] DEBUG - PR 69 will-moore 'Roi encoder allows Shape None' 2025-09-29 00:19:34,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34 HTTP/1.1" 200 None 2025-09-29 00:19:34,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34/comments HTTP/1.1" 200 None 2025-09-29 00:19:35,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33 HTTP/1.1" 200 None 2025-09-29 00:19:35,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33/comments HTTP/1.1" 200 None 2025-09-29 00:19:35,508 [ scc.repo] DEBUG ## Branches found: 2025-09-29 00:19:35,508 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal 2025-09-29 00:19:35,508 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:19:35,508 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:35,510 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-29 00:19:35,513 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-29 00:19:35,513 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-29 00:19:35,515 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-29 00:19:35,518 [ scc.git] DEBUG Already up to date. 2025-09-29 00:19:35,518 [ scc.git] DEBUG Calling 'git fetch origin pull/69/head' 2025-09-29 00:19:35,804 [ scc.git] DEBUG From https://github.com/ome/omero-marshal 2025-09-29 00:19:35,804 [ scc.git] DEBUG * branch refs/pull/69/head -> FETCH_HEAD 2025-09-29 00:19:35,807 [ scc.git] DEBUG ## Unique users: [] 2025-09-29 00:19:35,807 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:19:35,807 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:35,809 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1cbe0bebb081ffedb835c966ecb434d33502ceca' 2025-09-29 00:19:35,813 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:35,815 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 69 (Roi encoder allows Shape None) 1cbe0bebb081ffedb835c966ecb434d33502ceca' 2025-09-29 00:19:35,823 [ scc.git] DEBUG Auto-merging tests/unit/conftest.py 2025-09-29 00:19:35,824 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:19:35,826 [ scc.git] DEBUG omero_marshal/encode/encoders/roi.py | 5 +++-- 2025-09-29 00:19:35,826 [ scc.git] DEBUG tests/unit/conftest.py | 5 ++++- 2025-09-29 00:19:35,826 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 3 deletions(-) 2025-09-29 00:19:35,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:19:35,977 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-29 00:19:36,012 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:19:36,012 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:36,014 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-29 00:19:36,048 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-29 00:19:36,051 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed178f66d0> has no local changes 2025-09-29 00:19:36,051 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-marshal Excluded PRs: - PR 84 joshmoore 'New JSON-LD context-based version' (stage: draft) - PR 34 chris-allan 'Initial support for Event' (exclude comment) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) Already up to date. Merged PRs: - PR 69 will-moore 'Roi encoder allows Shape None' Generated by OMERO-python-superbuild-push#532 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/532/)' 2025-09-29 00:19:36,057 [ scc.git] DEBUG [detached HEAD 21d9d38] merge master -Dorg -Ssuccess-only 2025-09-29 00:19:36,057 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-29 00:19:36,057 [ scc.repo] DEBUG ## PRs found: 2025-09-29 00:19:36,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/pulls HTTP/1.1" 200 None 2025-09-29 00:19:37,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/478 HTTP/1.1" 200 None 2025-09-29 00:19:37,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/478/comments HTTP/1.1" 200 None 2025-09-29 00:19:38,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/9355ba49bedb4707025593d1092550fa82550d68 HTTP/1.1" 200 None 2025-09-29 00:19:38,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/9355ba49bedb4707025593d1092550fa82550d68/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:19:39,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/9355ba49bedb4707025593d1092550fa82550d68/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-29 00:19:39,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/9355ba49bedb4707025593d1092550fa82550d68 HTTP/1.1" 200 None 2025-09-29 00:19:39,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/9355ba49bedb4707025593d1092550fa82550d68?per_page=1 HTTP/1.1" 200 None 2025-09-29 00:19:40,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/9355ba49bedb4707025593d1092550fa82550d68 HTTP/1.1" 200 None 2025-09-29 00:19:40,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/9355ba49bedb4707025593d1092550fa82550d68/status HTTP/1.1" 200 None 2025-09-29 00:19:40,874 [ scc.repo] DEBUG - PR 478 chris-allan 'Remove Python 2 compat from gateway utilities and scripts tests' 2025-09-29 00:19:41,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/470 HTTP/1.1" 200 None 2025-09-29 00:19:41,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/470/comments HTTP/1.1" 200 None 2025-09-29 00:19:42,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/459 HTTP/1.1" 200 None 2025-09-29 00:19:42,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/450 HTTP/1.1" 200 None 2025-09-29 00:19:43,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/450/comments HTTP/1.1" 200 None 2025-09-29 00:19:43,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/408 HTTP/1.1" 200 None 2025-09-29 00:19:44,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/408/comments HTTP/1.1" 200 None 2025-09-29 00:19:44,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None 2025-09-29 00:19:45,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:19:46,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None 2025-09-29 00:19:46,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/5b69af339bf34bd4adcf16a7f6a03fafa2921804?per_page=1 HTTP/1.1" 200 2 2025-09-29 00:19:46,449 [ scc.repo] DEBUG - PR 408 jburel 'remove deprecated method' 2025-09-29 00:19:46,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/396 HTTP/1.1" 200 None 2025-09-29 00:19:47,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/396/comments HTTP/1.1" 200 None 2025-09-29 00:19:47,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573 HTTP/1.1" 200 None 2025-09-29 00:19:48,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:19:48,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-29 00:19:49,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/391 HTTP/1.1" 200 None 2025-09-29 00:19:49,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/391/comments HTTP/1.1" 200 None 2025-09-29 00:19:50,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None 2025-09-29 00:19:50,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:19:51,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None 2025-09-29 00:19:51,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/20da2ca68fa40df47b5436887597e9804098f023?per_page=1 HTTP/1.1" 200 2 2025-09-29 00:19:51,625 [ scc.repo] DEBUG - PR 391 joshmoore 'Add jstack command' 2025-09-29 00:19:52,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332 HTTP/1.1" 200 None 2025-09-29 00:19:52,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332/comments HTTP/1.1" 200 None 2025-09-29 00:19:53,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None 2025-09-29 00:19:53,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:19:53,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None 2025-09-29 00:19:54,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/c427fcd99373ad6c0c2d28d322827d0523ba7afc?per_page=1 HTTP/1.1" 200 2 2025-09-29 00:19:54,432 [ scc.repo] DEBUG - PR 332 jburel 'Build conda' 2025-09-29 00:19:54,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299 HTTP/1.1" 200 None 2025-09-29 00:19:55,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299/comments HTTP/1.1" 200 None 2025-09-29 00:19:55,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199 HTTP/1.1" 200 None 2025-09-29 00:19:56,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199/comments HTTP/1.1" 200 None 2025-09-29 00:19:56,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None 2025-09-29 00:19:57,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:19:57,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None 2025-09-29 00:19:58,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/d9df94bbff36ef1f943c9ab1995cd60831e572ec?per_page=1 HTTP/1.1" 200 2 2025-09-29 00:19:58,112 [ scc.repo] DEBUG - PR 199 joshmoore 'user: allow setting default group' 2025-09-29 00:19:58,113 [ scc.repo] DEBUG ## Branches found: 2025-09-29 00:19:58,113 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py 2025-09-29 00:19:58,113 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:19:58,113 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:58,115 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-29 00:19:58,118 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-29 00:19:58,118 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-29 00:19:58,120 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-29 00:19:58,123 [ scc.git] DEBUG Already up to date. 2025-09-29 00:19:58,123 [ scc.git] DEBUG Calling 'git fetch origin pull/199/head' 2025-09-29 00:19:58,439 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-09-29 00:19:58,440 [ scc.git] DEBUG * branch refs/pull/199/head -> FETCH_HEAD 2025-09-29 00:19:58,443 [ scc.git] DEBUG Calling 'git fetch origin pull/332/head' 2025-09-29 00:19:58,720 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-09-29 00:19:58,720 [ scc.git] DEBUG * branch refs/pull/332/head -> FETCH_HEAD 2025-09-29 00:19:58,724 [ scc.git] DEBUG Calling 'git fetch origin pull/391/head' 2025-09-29 00:19:59,001 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-09-29 00:19:59,001 [ scc.git] DEBUG * branch refs/pull/391/head -> FETCH_HEAD 2025-09-29 00:19:59,005 [ scc.git] DEBUG Calling 'git fetch origin pull/408/head' 2025-09-29 00:19:59,284 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-09-29 00:19:59,284 [ scc.git] DEBUG * branch refs/pull/408/head -> FETCH_HEAD 2025-09-29 00:19:59,288 [ scc.git] DEBUG Calling 'git fetch origin pull/478/head' 2025-09-29 00:19:59,569 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-09-29 00:19:59,569 [ scc.git] DEBUG * branch refs/pull/478/head -> FETCH_HEAD 2025-09-29 00:19:59,573 [ scc.git] DEBUG ## Unique users: [] 2025-09-29 00:19:59,573 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:19:59,573 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:59,575 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d9df94bbff36ef1f943c9ab1995cd60831e572ec' 2025-09-29 00:19:59,586 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:59,588 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 199 (user: allow setting default group) d9df94bbff36ef1f943c9ab1995cd60831e572ec' 2025-09-29 00:19:59,609 [ scc.git] DEBUG Auto-merging src/omero/cli.py 2025-09-29 00:19:59,609 [ scc.git] DEBUG Auto-merging src/omero/plugins/user.py 2025-09-29 00:19:59,610 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:19:59,614 [ scc.git] DEBUG src/omero/cli.py | 6 ++++++ 2025-09-29 00:19:59,614 [ scc.git] DEBUG src/omero/plugins/user.py | 36 +++++++++++++++++++++++++++++++++--- 2025-09-29 00:19:59,614 [ scc.git] DEBUG 2 files changed, 39 insertions(+), 3 deletions(-) 2025-09-29 00:19:59,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:19:59,753 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c427fcd99373ad6c0c2d28d322827d0523ba7afc' 2025-09-29 00:19:59,764 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:19:59,766 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 332 (Build conda) c427fcd99373ad6c0c2d28d322827d0523ba7afc' 2025-09-29 00:19:59,783 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:19:59,786 [ scc.git] DEBUG .github/workflows/install.yml | 37 +++++++++++++++++++++++++++++++++++++ 2025-09-29 00:19:59,786 [ scc.git] DEBUG connect.py | 11 +++++++++++ 2025-09-29 00:19:59,786 [ scc.git] DEBUG 2 files changed, 48 insertions(+) 2025-09-29 00:19:59,786 [ scc.git] DEBUG create mode 100644 .github/workflows/install.yml 2025-09-29 00:19:59,786 [ scc.git] DEBUG create mode 100644 connect.py 2025-09-29 00:20:00,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:20:00,151 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...20da2ca68fa40df47b5436887597e9804098f023' 2025-09-29 00:20:00,162 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:20:00,164 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 391 (Add jstack command) 20da2ca68fa40df47b5436887597e9804098f023' 2025-09-29 00:20:00,184 [ scc.git] DEBUG Auto-merging src/omero/plugins/admin.py 2025-09-29 00:20:00,185 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:20:00,189 [ scc.git] DEBUG src/omero/plugins/admin.py | 61 ++++++++++++++++++++++++++++++++++++++++++++-- 2025-09-29 00:20:00,189 [ scc.git] DEBUG 1 file changed, 59 insertions(+), 2 deletions(-) 2025-09-29 00:20:00,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:20:00,531 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5b69af339bf34bd4adcf16a7f6a03fafa2921804' 2025-09-29 00:20:00,542 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:20:00,544 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 408 (remove deprecated method) 5b69af339bf34bd4adcf16a7f6a03fafa2921804' 2025-09-29 00:20:00,575 [ scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py 2025-09-29 00:20:00,576 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:20:00,583 [ scc.git] DEBUG src/omero/gateway/__init__.py | 36 ------------------------------------ 2025-09-29 00:20:00,583 [ scc.git] DEBUG 1 file changed, 36 deletions(-) 2025-09-29 00:20:00,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:20:00,922 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9355ba49bedb4707025593d1092550fa82550d68' 2025-09-29 00:20:00,933 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:20:00,936 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 478 (Remove Python 2 compat from gateway utilities and scripts tests) 9355ba49bedb4707025593d1092550fa82550d68' 2025-09-29 00:20:00,957 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:20:00,960 [ scc.git] DEBUG src/omero/gateway/utils.py | 9 +-------- 2025-09-29 00:20:00,960 [ scc.git] DEBUG test/unit/scriptstest/test_parse.py | 6 ------ 2025-09-29 00:20:00,960 [ scc.git] DEBUG 2 files changed, 1 insertion(+), 14 deletions(-) 2025-09-29 00:20:01,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:20:01,323 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-29 00:20:01,359 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:20:01,359 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:20:01,361 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-29 00:20:01,395 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-29 00:20:01,401 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed17934850> has no local changes 2025-09-29 00:20:01,401 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-py Excluded PRs: - PR 470 multimeric 'Faux import' (user: multimeric) - PR 459 Tom-TBT 'Wrapper improvements for ROIs' (stage: draft) - PR 450 multimeric 'Add model stubs' (user: multimeric) - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure) - PR 299 joshmoore 'Add parents and children to omero obj' (exclude comment) Already up to date. Merged PRs: - PR 199 joshmoore 'user: allow setting default group' - PR 332 jburel 'Build conda' - PR 391 joshmoore 'Add jstack command' - PR 408 jburel 'remove deprecated method' - PR 478 chris-allan 'Remove Python 2 compat from gateway utilities and scripts tests' Generated by OMERO-python-superbuild-push#532 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/532/)' 2025-09-29 00:20:01,407 [ scc.git] DEBUG [detached HEAD 8a02c9d7] merge master -Dorg -Ssuccess-only 2025-09-29 00:20:01,407 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-29 00:20:01,407 [ scc.git] INFO Overriding base-branch from master to develop 2025-09-29 00:20:01,407 [ scc.repo] DEBUG ## PRs found: 2025-09-29 00:20:02,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2025-09-29 00:20:02,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None 2025-09-29 00:20:02,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None 2025-09-29 00:20:03,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None 2025-09-29 00:20:03,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:04,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-29 00:20:04,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None 2025-09-29 00:20:05,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2 2025-09-29 00:20:05,328 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images' 2025-09-29 00:20:05,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None 2025-09-29 00:20:06,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None 2025-09-29 00:20:06,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2025-09-29 00:20:07,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:07,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2025-09-29 00:20:08,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2 2025-09-29 00:20:08,254 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2025-09-29 00:20:08,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None 2025-09-29 00:20:09,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None 2025-09-29 00:20:09,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None 2025-09-29 00:20:10,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None 2025-09-29 00:20:10,173 [ scc.repo] DEBUG ## Branches found: 2025-09-29 00:20:10,173 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts 2025-09-29 00:20:10,173 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:20:10,173 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:20:10,175 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2025-09-29 00:20:10,177 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-29 00:20:10,177 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2025-09-29 00:20:10,180 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2025-09-29 00:20:10,183 [ scc.git] DEBUG Already up to date. 2025-09-29 00:20:10,183 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head' 2025-09-29 00:20:10,470 [ scc.git] DEBUG From https://github.com/ome/omero-scripts 2025-09-29 00:20:10,470 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD 2025-09-29 00:20:10,473 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head' 2025-09-29 00:20:10,752 [ scc.git] DEBUG From https://github.com/ome/omero-scripts 2025-09-29 00:20:10,752 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD 2025-09-29 00:20:10,755 [ scc.git] DEBUG ## Unique users: [] 2025-09-29 00:20:10,755 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:20:10,755 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:20:10,757 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-09-29 00:20:10,762 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:20:10,764 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-09-29 00:20:10,773 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree. 2025-09-29 00:20:10,773 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-29 00:20:10,774 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-29 00:20:10,776 [ scc.git] DEBUG Calling 'git reset --hard 03b9116196e1a799dd18a666559613d912be01a5' 2025-09-29 00:20:10,779 [ scc.git] DEBUG HEAD is now at 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 2025-09-29 00:20:10,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:20:10,935 [ scc.git] DEBUG Calling 'git merge-base 03b9116196e1a799dd18a666559613d912be01a5 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-09-29 00:20:10,940 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..03b9116196e1a799dd18a666559613d912be01a5' 2025-09-29 00:20:10,943 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Conflicting PR. Removed from build [OMERO-python-superbuild-push#532](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/532/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/532/consoleText) for more details. Possible conflicts: - Upstream changes - omero/annotation_scripts/KeyVal_to_csv.py --conflicts 2025-09-29 00:20:10,945 [ scc.config] DEBUG Found github.token 2025-09-29 00:20:10,945 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts. 2025-09-29 00:20:10,945 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8' 2025-09-29 00:20:10,949 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:20:10,951 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8' 2025-09-29 00:20:10,959 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:20:10,962 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++- 2025-09-29 00:20:10,962 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-) 2025-09-29 00:20:11,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:20:11,335 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-29 00:20:11,371 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:20:11,371 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:20:11,373 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-29 00:20:11,408 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-29 00:20:11,411 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed17934450> has no local changes 2025-09-29 00:20:11,411 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Already up to date. Merged PRs: - PR 223 will-moore 'don't attempt ROI stats on big images' Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Generated by OMERO-python-superbuild-push#532 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/532/)' 2025-09-29 00:20:11,416 [ scc.git] DEBUG [detached HEAD dee2404] merge master -Dorg -Ssuccess-only 2025-09-29 00:20:11,416 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-29 00:20:11,416 [ scc.repo] DEBUG ## PRs found: 2025-09-29 00:20:12,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/pulls HTTP/1.1" 200 None 2025-09-29 00:20:12,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/635 HTTP/1.1" 200 None 2025-09-29 00:20:12,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/635/comments HTTP/1.1" 200 None 2025-09-29 00:20:13,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/7446a144da7db207d65373456bf9347cc0a3dadb HTTP/1.1" 200 None 2025-09-29 00:20:13,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/7446a144da7db207d65373456bf9347cc0a3dadb/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:14,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/7446a144da7db207d65373456bf9347cc0a3dadb/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-29 00:20:14,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/7446a144da7db207d65373456bf9347cc0a3dadb HTTP/1.1" 200 None 2025-09-29 00:20:15,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/7446a144da7db207d65373456bf9347cc0a3dadb?per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:15,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/7446a144da7db207d65373456bf9347cc0a3dadb HTTP/1.1" 200 None 2025-09-29 00:20:16,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/7446a144da7db207d65373456bf9347cc0a3dadb/status HTTP/1.1" 200 None 2025-09-29 00:20:16,302 [ scc.repo] DEBUG - PR 635 will-moore 'Marshal annotations roi shape' 2025-09-29 00:20:16,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/629 HTTP/1.1" 200 None 2025-09-29 00:20:17,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/628 HTTP/1.1" 200 None 2025-09-29 00:20:17,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60 HTTP/1.1" 200 None 2025-09-29 00:20:18,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:18,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-29 00:20:19,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60 HTTP/1.1" 200 None 2025-09-29 00:20:19,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/b8c7989c9900270d7cf27523f2649bbb903c7a60?per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:20,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60 HTTP/1.1" 200 None 2025-09-29 00:20:20,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60/status HTTP/1.1" 200 None 2025-09-29 00:20:20,614 [ scc.repo] DEBUG - PR 628 jburel 'Add protocol required since Django4' 2025-09-29 00:20:21,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/619 HTTP/1.1" 200 None 2025-09-29 00:20:21,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac HTTP/1.1" 200 None 2025-09-29 00:20:22,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:22,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-29 00:20:23,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac HTTP/1.1" 200 None 2025-09-29 00:20:23,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/6dbfcebfee72e20f36a434fdc8850930d89acdac?per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:23,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac HTTP/1.1" 200 None 2025-09-29 00:20:24,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac/status HTTP/1.1" 200 None 2025-09-29 00:20:24,339 [ scc.repo] DEBUG - PR 619 DavidStirling 'Permit subpackages as app plugins' 2025-09-29 00:20:24,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/613 HTTP/1.1" 200 None 2025-09-29 00:20:25,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/613/comments HTTP/1.1" 200 None 2025-09-29 00:20:25,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/189a10758bce63c40d0fe73d490cc489623a6ceb HTTP/1.1" 200 None 2025-09-29 00:20:26,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/189a10758bce63c40d0fe73d490cc489623a6ceb/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:26,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/189a10758bce63c40d0fe73d490cc489623a6ceb/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-29 00:20:27,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/189a10758bce63c40d0fe73d490cc489623a6ceb HTTP/1.1" 200 None 2025-09-29 00:20:27,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/189a10758bce63c40d0fe73d490cc489623a6ceb?per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:28,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/189a10758bce63c40d0fe73d490cc489623a6ceb HTTP/1.1" 200 None 2025-09-29 00:20:28,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/189a10758bce63c40d0fe73d490cc489623a6ceb/status HTTP/1.1" 200 None 2025-09-29 00:20:28,709 [ scc.repo] DEBUG - PR 613 will-moore 'externalInfo display' 2025-09-29 00:20:29,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/612 HTTP/1.1" 200 None 2025-09-29 00:20:29,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/612/comments HTTP/1.1" 200 None 2025-09-29 00:20:30,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26 HTTP/1.1" 200 None 2025-09-29 00:20:30,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:31,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-29 00:20:31,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26 HTTP/1.1" 200 None 2025-09-29 00:20:31,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/06446bf912b361c22e46c5a0678b3146b91e7e26?per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:32,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26 HTTP/1.1" 200 None 2025-09-29 00:20:32,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26/status HTTP/1.1" 200 None 2025-09-29 00:20:32,888 [ scc.repo] DEBUG - PR 612 will-moore 'Allow top_links to wrap if too many for space' 2025-09-29 00:20:33,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/604 HTTP/1.1" 200 None 2025-09-29 00:20:33,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/604/comments HTTP/1.1" 200 None 2025-09-29 00:20:34,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d HTTP/1.1" 200 None 2025-09-29 00:20:34,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:35,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-29 00:20:35,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d HTTP/1.1" 200 None 2025-09-29 00:20:36,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/15e1289cb1c1533c8606b9c9f745d1f24575bb7d?per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:36,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d HTTP/1.1" 200 None 2025-09-29 00:20:37,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d/status HTTP/1.1" 200 None 2025-09-29 00:20:37,132 [ scc.repo] DEBUG - PR 604 will-moore 'Right panel perf' 2025-09-29 00:20:37,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/602 HTTP/1.1" 200 None 2025-09-29 00:20:38,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539 HTTP/1.1" 200 None 2025-09-29 00:20:38,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:39,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-29 00:20:39,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539 HTTP/1.1" 200 None 2025-09-29 00:20:40,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/9119372e9fef8cab0e212f02685c8715a3307539?per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:40,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539 HTTP/1.1" 200 None 2025-09-29 00:20:41,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539/status HTTP/1.1" 200 None 2025-09-29 00:20:41,089 [ scc.repo] DEBUG - PR 602 Tom-TBT 'Inherit all annotations' 2025-09-29 00:20:41,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/596 HTTP/1.1" 200 None 2025-09-29 00:20:42,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/596/comments HTTP/1.1" 200 None 2025-09-29 00:20:42,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8 HTTP/1.1" 200 None 2025-09-29 00:20:43,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:43,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-29 00:20:44,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8 HTTP/1.1" 200 None 2025-09-29 00:20:44,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/3aae48f586d7b412538a45b34ddc471a26a286e8?per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:44,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8 HTTP/1.1" 200 None 2025-09-29 00:20:45,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8/status HTTP/1.1" 200 None 2025-09-29 00:20:45,396 [ scc.repo] DEBUG - PR 596 sukunis 'Linkify can parse anchor tag' 2025-09-29 00:20:45,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/595 HTTP/1.1" 200 None 2025-09-29 00:20:46,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/595/comments HTTP/1.1" 200 None 2025-09-29 00:20:46,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb HTTP/1.1" 200 None 2025-09-29 00:20:47,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:47,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-29 00:20:48,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb HTTP/1.1" 200 None 2025-09-29 00:20:48,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/30278b64bb39134a3f1101b600d4a82256e6eaeb?per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:49,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb HTTP/1.1" 200 None 2025-09-29 00:20:49,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb/status HTTP/1.1" 200 None 2025-09-29 00:20:49,740 [ scc.repo] DEBUG - PR 595 sukunis 'linkify supports urls that include {}[] characters' 2025-09-29 00:20:50,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535 HTTP/1.1" 200 None 2025-09-29 00:20:50,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535/comments HTTP/1.1" 200 None 2025-09-29 00:20:51,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534 HTTP/1.1" 200 None 2025-09-29 00:20:51,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534/comments HTTP/1.1" 200 None 2025-09-29 00:20:52,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None 2025-09-29 00:20:52,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:52,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None 2025-09-29 00:20:53,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005?per_page=1 HTTP/1.1" 200 2 2025-09-29 00:20:53,365 [ scc.repo] DEBUG - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' 2025-09-29 00:20:53,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527 HTTP/1.1" 200 None 2025-09-29 00:20:54,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527/comments HTTP/1.1" 200 None 2025-09-29 00:20:54,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None 2025-09-29 00:20:55,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:55,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None 2025-09-29 00:20:56,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/5565fa5d8fdefd1a406a9951f80779817ea35767?per_page=1 HTTP/1.1" 200 2 2025-09-29 00:20:56,143 [ scc.repo] DEBUG - PR 527 will-moore 'Add some initial CSP settings to test' 2025-09-29 00:20:56,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168 HTTP/1.1" 200 None 2025-09-29 00:20:57,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168/comments HTTP/1.1" 200 None 2025-09-29 00:20:57,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200 HTTP/1.1" 200 None 2025-09-29 00:20:58,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-29 00:20:58,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200 HTTP/1.1" 200 None 2025-09-29 00:20:59,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/06b0073db19eeccb9698860f75639084ad1b1200?per_page=1 HTTP/1.1" 200 2 2025-09-29 00:20:59,017 [ scc.repo] DEBUG - PR 168 stick 'Changes to nginx @maintenance handler' 2025-09-29 00:20:59,017 [ scc.repo] DEBUG ## Branches found: 2025-09-29 00:20:59,017 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web 2025-09-29 00:20:59,018 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:20:59,018 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:20:59,020 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-29 00:20:59,023 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-29 00:20:59,023 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-29 00:20:59,026 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-29 00:20:59,029 [ scc.git] DEBUG Already up to date. 2025-09-29 00:20:59,029 [ scc.git] DEBUG Calling 'git fetch origin pull/168/head' 2025-09-29 00:20:59,336 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-29 00:20:59,336 [ scc.git] DEBUG * branch refs/pull/168/head -> FETCH_HEAD 2025-09-29 00:20:59,340 [ scc.git] DEBUG Calling 'git fetch origin pull/527/head' 2025-09-29 00:20:59,625 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-29 00:20:59,625 [ scc.git] DEBUG * branch refs/pull/527/head -> FETCH_HEAD 2025-09-29 00:20:59,629 [ scc.git] DEBUG Calling 'git fetch origin pull/534/head' 2025-09-29 00:20:59,913 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-29 00:20:59,913 [ scc.git] DEBUG * branch refs/pull/534/head -> FETCH_HEAD 2025-09-29 00:20:59,917 [ scc.git] DEBUG Calling 'git fetch origin pull/595/head' 2025-09-29 00:21:00,207 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-29 00:21:00,207 [ scc.git] DEBUG * branch refs/pull/595/head -> FETCH_HEAD 2025-09-29 00:21:00,211 [ scc.git] DEBUG Calling 'git fetch origin pull/596/head' 2025-09-29 00:21:00,495 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-29 00:21:00,495 [ scc.git] DEBUG * branch refs/pull/596/head -> FETCH_HEAD 2025-09-29 00:21:00,498 [ scc.git] DEBUG Calling 'git fetch origin pull/602/head' 2025-09-29 00:21:00,791 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-29 00:21:00,791 [ scc.git] DEBUG * branch refs/pull/602/head -> FETCH_HEAD 2025-09-29 00:21:00,795 [ scc.git] DEBUG Calling 'git fetch origin pull/604/head' 2025-09-29 00:21:01,088 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-29 00:21:01,088 [ scc.git] DEBUG * branch refs/pull/604/head -> FETCH_HEAD 2025-09-29 00:21:01,092 [ scc.git] DEBUG Calling 'git fetch origin pull/612/head' 2025-09-29 00:21:01,373 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-29 00:21:01,373 [ scc.git] DEBUG * branch refs/pull/612/head -> FETCH_HEAD 2025-09-29 00:21:01,377 [ scc.git] DEBUG Calling 'git fetch origin pull/613/head' 2025-09-29 00:21:01,663 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-29 00:21:01,663 [ scc.git] DEBUG * branch refs/pull/613/head -> FETCH_HEAD 2025-09-29 00:21:01,667 [ scc.git] DEBUG Calling 'git fetch origin pull/619/head' 2025-09-29 00:21:01,944 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-29 00:21:01,944 [ scc.git] DEBUG * branch refs/pull/619/head -> FETCH_HEAD 2025-09-29 00:21:01,948 [ scc.git] DEBUG Calling 'git fetch origin pull/628/head' 2025-09-29 00:21:02,228 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-29 00:21:02,228 [ scc.git] DEBUG * branch refs/pull/628/head -> FETCH_HEAD 2025-09-29 00:21:02,231 [ scc.git] DEBUG Calling 'git fetch origin pull/635/head' 2025-09-29 00:21:02,513 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-29 00:21:02,513 [ scc.git] DEBUG * branch refs/pull/635/head -> FETCH_HEAD 2025-09-29 00:21:02,517 [ scc.git] DEBUG ## Unique users: [] 2025-09-29 00:21:02,517 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:21:02,517 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:21:02,519 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...06b0073db19eeccb9698860f75639084ad1b1200' 2025-09-29 00:21:02,526 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:21:02,528 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 168 (Changes to nginx @maintenance handler) 06b0073db19eeccb9698860f75639084ad1b1200' 2025-09-29 00:21:02,545 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:21:02,549 [ scc.git] DEBUG omeroweb/templates/nginx-development.conf.template | 2 +- 2025-09-29 00:21:02,549 [ scc.git] DEBUG omeroweb/templates/nginx-location.conf.template | 3 ++- 2025-09-29 00:21:02,549 [ scc.git] DEBUG omeroweb/templates/nginx.conf.template | 2 +- 2025-09-29 00:21:02,549 [ scc.git] DEBUG test/unit/reference_templates/nginx-development-withoptions.conf | 2 +- 2025-09-29 00:21:02,549 [ scc.git] DEBUG test/unit/reference_templates/nginx-development.conf | 2 +- 2025-09-29 00:21:02,549 [ scc.git] DEBUG test/unit/reference_templates/nginx-location-withoptions.conf | 3 ++- 2025-09-29 00:21:02,549 [ scc.git] DEBUG test/unit/reference_templates/nginx-location.conf | 3 ++- 2025-09-29 00:21:02,549 [ scc.git] DEBUG test/unit/reference_templates/nginx-withoptions.conf | 2 +- 2025-09-29 00:21:02,549 [ scc.git] DEBUG test/unit/reference_templates/nginx.conf | 2 +- 2025-09-29 00:21:02,549 [ scc.git] DEBUG test/unit/test_web.py | 1 + 2025-09-29 00:21:02,549 [ scc.git] DEBUG 10 files changed, 13 insertions(+), 9 deletions(-) 2025-09-29 00:21:02,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:02,690 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5565fa5d8fdefd1a406a9951f80779817ea35767' 2025-09-29 00:21:02,697 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:21:02,699 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 527 (Add some initial CSP settings to test) 5565fa5d8fdefd1a406a9951f80779817ea35767' 2025-09-29 00:21:02,717 [ scc.git] DEBUG Auto-merging omeroweb/settings.py 2025-09-29 00:21:02,717 [ scc.git] DEBUG Auto-merging setup.py 2025-09-29 00:21:02,718 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:21:02,721 [ scc.git] DEBUG omeroweb/settings.py | 42 +++++++++++++++++++++++++++++++++++++++++- 2025-09-29 00:21:02,721 [ scc.git] DEBUG setup.py | 1 + 2025-09-29 00:21:02,721 [ scc.git] DEBUG 2 files changed, 42 insertions(+), 1 deletion(-) 2025-09-29 00:21:03,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:03,094 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d328a0cbb5b49cd63929a8a6c6cf7a89a925d005' 2025-09-29 00:21:03,101 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:21:03,103 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 534 (get strings from omero.cmd.ERR and omero.CmdError correctly) d328a0cbb5b49cd63929a8a6c6cf7a89a925d005' 2025-09-29 00:21:03,122 [ scc.git] DEBUG Auto-merging omeroweb/webclient/webclient_gateway.py 2025-09-29 00:21:03,122 [ scc.git] DEBUG Auto-merging omeroweb/webgateway/marshal.py 2025-09-29 00:21:03,124 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:21:03,127 [ scc.git] DEBUG omeroweb/webclient/webclient_gateway.py | 2 +- 2025-09-29 00:21:03,127 [ scc.git] DEBUG omeroweb/webgateway/marshal.py | 4 ++-- 2025-09-29 00:21:03,127 [ scc.git] DEBUG 2 files changed, 3 insertions(+), 3 deletions(-) 2025-09-29 00:21:03,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:03,478 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...30278b64bb39134a3f1101b600d4a82256e6eaeb' 2025-09-29 00:21:03,485 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:21:03,488 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 595 (linkify supports urls that include {}[] characters) 30278b64bb39134a3f1101b600d4a82256e6eaeb' 2025-09-29 00:21:03,505 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:21:03,508 [ scc.git] DEBUG omeroweb/webclient/static/webclient/javascript/ome.webclient.actions.js | 2 +- 2025-09-29 00:21:03,508 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-29 00:21:03,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:03,903 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3aae48f586d7b412538a45b34ddc471a26a286e8' 2025-09-29 00:21:03,910 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:21:03,912 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 596 (Linkify can parse anchor tag) 3aae48f586d7b412538a45b34ddc471a26a286e8' 2025-09-29 00:21:03,930 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:21:03,933 [ scc.git] DEBUG .../webclient/javascript/ome.webclient.actions.js | 26 ++++++++++++++++++++-- 2025-09-29 00:21:03,933 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-) 2025-09-29 00:21:04,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:04,301 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9119372e9fef8cab0e212f02685c8715a3307539' 2025-09-29 00:21:04,309 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:21:04,311 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 602 (Inherit all annotations) 9119372e9fef8cab0e212f02685c8715a3307539' 2025-09-29 00:21:04,331 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:21:04,335 [ scc.git] DEBUG omeroweb/webclient/static/webclient/css/dusty.css | 1 - 2025-09-29 00:21:04,335 [ scc.git] DEBUG .../javascript/ome.right_panel_comments_pane.js | 134 +++++++++++++++++++-- 2025-09-29 00:21:04,335 [ scc.git] DEBUG .../javascript/ome.right_panel_fileanns_pane.js | 80 +++++++++++- 2025-09-29 00:21:04,335 [ scc.git] DEBUG .../javascript/ome.right_panel_mapanns_pane.js | 6 +- 2025-09-29 00:21:04,335 [ scc.git] DEBUG .../javascript/ome.right_panel_ratings_pane.js | 33 ++++- 2025-09-29 00:21:04,335 [ scc.git] DEBUG .../javascript/ome.right_panel_tags_pane.js | 92 ++++++++++++-- 2025-09-29 00:21:04,335 [ scc.git] DEBUG .../webclient/annotations/comments_underscore.html | 58 +++++++-- 2025-09-29 00:21:04,336 [ scc.git] DEBUG .../webclient/annotations/fileanns_underscore.html | 81 ++++++++----- 2025-09-29 00:21:04,336 [ scc.git] DEBUG .../webclient/annotations/mapanns_underscore.html | 4 + 2025-09-29 00:21:04,336 [ scc.git] DEBUG .../webclient/annotations/ratings_underscore.html | 4 +- 2025-09-29 00:21:04,336 [ scc.git] DEBUG .../webclient/annotations/tags_underscore.html | 30 +++-- 2025-09-29 00:21:04,336 [ scc.git] DEBUG 11 files changed, 447 insertions(+), 76 deletions(-) 2025-09-29 00:21:04,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:04,689 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...15e1289cb1c1533c8606b9c9f745d1f24575bb7d' 2025-09-29 00:21:04,697 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:21:04,700 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 604 (Right panel perf) 15e1289cb1c1533c8606b9c9f745d1f24575bb7d' 2025-09-29 00:21:04,724 [ scc.git] DEBUG Auto-merging omeroweb/webclient/views.py 2025-09-29 00:21:04,726 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:21:04,731 [ scc.git] DEBUG omeroweb/webclient/controller/container.py | 66 ++++++++++------------ 2025-09-29 00:21:04,732 [ scc.git] DEBUG .../webclient/annotations/annotations_share.html | 12 +--- 2025-09-29 00:21:04,732 [ scc.git] DEBUG omeroweb/webclient/views.py | 51 ----------------- 2025-09-29 00:21:04,732 [ scc.git] DEBUG 3 files changed, 31 insertions(+), 98 deletions(-) 2025-09-29 00:21:05,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:05,086 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...06446bf912b361c22e46c5a0678b3146b91e7e26' 2025-09-29 00:21:05,094 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:21:05,096 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 612 (Allow top_links to wrap if too many for space) 06446bf912b361c22e46c5a0678b3146b91e7e26' 2025-09-29 00:21:05,115 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:21:05,119 [ scc.git] DEBUG .../webgateway/static/webgateway/css/ome.body.css | 2 ++ 2025-09-29 00:21:05,119 [ scc.git] DEBUG .../webgateway/static/webgateway/css/ome.header.css | 21 +++++++++++---------- 2025-09-29 00:21:05,119 [ scc.git] DEBUG 2 files changed, 13 insertions(+), 10 deletions(-) 2025-09-29 00:21:05,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:05,479 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...189a10758bce63c40d0fe73d490cc489623a6ceb' 2025-09-29 00:21:05,487 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:21:05,489 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 613 (externalInfo display) 189a10758bce63c40d0fe73d490cc489623a6ceb' 2025-09-29 00:21:05,508 [ scc.git] DEBUG Auto-merging omeroweb/webclient/static/webclient/css/dusty.css 2025-09-29 00:21:05,509 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:21:05,513 [ scc.git] DEBUG omeroweb/webclient/static/webclient/css/dusty.css | 2 +- 2025-09-29 00:21:05,513 [ scc.git] DEBUG .../webclient/annotations/includes/toolbar.html | 43 +++++++++++++++++++++- 2025-09-29 00:21:05,513 [ scc.git] DEBUG .../webclient/annotations/metadata_general.html | 31 +++++++++++----- 2025-09-29 00:21:05,513 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 2 + 2025-09-29 00:21:05,513 [ scc.git] DEBUG 4 files changed, 66 insertions(+), 12 deletions(-) 2025-09-29 00:21:05,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:05,876 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6dbfcebfee72e20f36a434fdc8850930d89acdac' 2025-09-29 00:21:05,884 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:21:05,886 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 619 (Permit subpackages as app plugins) 6dbfcebfee72e20f36a434fdc8850930d89acdac' 2025-09-29 00:21:05,904 [ scc.git] DEBUG Auto-merging omeroweb/settings.py 2025-09-29 00:21:05,905 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:21:05,909 [ scc.git] DEBUG omeroweb/settings.py | 9 ++++----- 2025-09-29 00:21:05,909 [ scc.git] DEBUG 1 file changed, 4 insertions(+), 5 deletions(-) 2025-09-29 00:21:06,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:06,276 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b8c7989c9900270d7cf27523f2649bbb903c7a60' 2025-09-29 00:21:06,283 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:21:06,286 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 628 (Add protocol required since Django4) b8c7989c9900270d7cf27523f2649bbb903c7a60' 2025-09-29 00:21:06,304 [ scc.git] DEBUG Auto-merging omeroweb/settings.py 2025-09-29 00:21:06,305 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:21:06,309 [ scc.git] DEBUG omeroweb/settings.py | 4 ++-- 2025-09-29 00:21:06,309 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 2 deletions(-) 2025-09-29 00:21:06,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:06,690 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...7446a144da7db207d65373456bf9347cc0a3dadb' 2025-09-29 00:21:06,698 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:21:06,700 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 635 (Marshal annotations roi shape) 7446a144da7db207d65373456bf9347cc0a3dadb' 2025-09-29 00:21:06,722 [ scc.git] DEBUG Auto-merging omeroweb/webclient/views.py 2025-09-29 00:21:06,723 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-29 00:21:06,729 [ scc.git] DEBUG omeroweb/webclient/tree.py | 6 ++++++ 2025-09-29 00:21:06,729 [ scc.git] DEBUG omeroweb/webclient/views.py | 6 ++++++ 2025-09-29 00:21:06,729 [ scc.git] DEBUG 2 files changed, 12 insertions(+) 2025-09-29 00:21:07,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:07,079 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-29 00:21:07,115 [ scc.git] DEBUG Get sha1 of %s 2025-09-29 00:21:07,115 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-29 00:21:07,117 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-29 00:21:07,153 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-29 00:21:07,161 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed178fc210> has no local changes 2025-09-29 00:21:07,161 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web Excluded PRs: - PR 629 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 535 will-moore 'Initial working browser history' (stage: draft) Already up to date. Merged PRs: - PR 168 stick 'Changes to nginx @maintenance handler' - PR 527 will-moore 'Add some initial CSP settings to test' - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' - PR 595 sukunis 'linkify supports urls that include {}[] characters' - PR 596 sukunis 'Linkify can parse anchor tag' - PR 602 Tom-TBT 'Inherit all annotations' - PR 604 will-moore 'Right panel perf' - PR 612 will-moore 'Allow top_links to wrap if too many for space' - PR 613 will-moore 'externalInfo display' - PR 619 DavidStirling 'Permit subpackages as app plugins' - PR 628 jburel 'Add protocol required since Django4' - PR 635 will-moore 'Marshal annotations roi shape' Generated by OMERO-python-superbuild-push#532 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/532/)' 2025-09-29 00:21:07,169 [ scc.git] DEBUG [detached HEAD 403abf22c] merge master -Dorg -Ssuccess-only 2025-09-29 00:21:07,169 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-29 00:21:07,169 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-29 00:21:07,212 [ scc.config] DEBUG Found submodule.omero-dropbox.url 2025-09-29 00:21:07,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:07,482 [ scc.config] DEBUG Found submodule.omero-marshal.url 2025-09-29 00:21:07,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:07,889 [ scc.config] DEBUG Found submodule.omero-py.url 2025-09-29 00:21:08,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:08,281 [ scc.config] DEBUG Found submodule.omero-scripts.url 2025-09-29 00:21:08,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:08,676 [ scc.config] DEBUG Found submodule.omero-web.url 2025-09-29 00:21:09,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-29 00:21:09,072 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-29 00:21:09,094 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fed184dfc50> has local changes 2025-09-29 00:21:09,094 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-python-superbuild Already up to date. Merged PRs: - PR 333 dependabot[bot] 'Bump omero-marshal from `6d44f66` to `57934f0`' Repository: ome/omero-dropbox Already up to date. Merged PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' - PR 26 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-marshal Excluded PRs: - PR 84 joshmoore 'New JSON-LD context-based version' (stage: draft) - PR 34 chris-allan 'Initial support for Event' (exclude comment) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) Already up to date. Merged PRs: - PR 69 will-moore 'Roi encoder allows Shape None' Repository: ome/omero-py Excluded PRs: - PR 470 multimeric 'Faux import' (user: multimeric) - PR 459 Tom-TBT 'Wrapper improvements for ROIs' (stage: draft) - PR 450 multimeric 'Add model stubs' (user: multimeric) - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure) - PR 299 joshmoore 'Add parents and children to omero obj' (exclude comment) Already up to date. Merged PRs: - PR 199 joshmoore 'user: allow setting default group' - PR 332 jburel 'Build conda' - PR 391 joshmoore 'Add jstack command' - PR 408 jburel 'remove deprecated method' - PR 478 chris-allan 'Remove Python 2 compat from gateway utilities and scripts tests' Repository: ome/omero-scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Already up to date. Merged PRs: - PR 223 will-moore 'don't attempt ROI stats on big images' Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Repository: ome/omero-web Excluded PRs: - PR 629 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 535 will-moore 'Initial working browser history' (stage: draft) Already up to date. Merged PRs: - PR 168 stick 'Changes to nginx @maintenance handler' - PR 527 will-moore 'Add some initial CSP settings to test' - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' - PR 595 sukunis 'linkify supports urls that include {}[] characters' - PR 596 sukunis 'Linkify can parse anchor tag' - PR 602 Tom-TBT 'Inherit all annotations' - PR 604 will-moore 'Right panel perf' - PR 612 will-moore 'Allow top_links to wrap if too many for space' - PR 613 will-moore 'externalInfo display' - PR 619 DavidStirling 'Permit subpackages as app plugins' - PR 628 jburel 'Add protocol required since Django4' - PR 635 will-moore 'Marshal annotations roi shape' Generated by OMERO-python-superbuild-push#532 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/532/)' 2025-09-29 00:21:09,101 [ scc.git] DEBUG [detached HEAD b3d5820] merge master -Dorg -Ssuccess-only 2025-09-29 00:21:09,101 [ scc.git] DEBUG 6 files changed, 10 insertions(+), 10 deletions(-) 2025-09-29 00:21:09,101 [ scc.merge] INFO Repository: ome/omero-python-superbuild 2025-09-29 00:21:09,101 [ scc.merge] INFO Already up to date. 2025-09-29 00:21:09,101 [ scc.merge] INFO 2025-09-29 00:21:09,101 [ scc.merge] INFO Merged PRs: 2025-09-29 00:21:09,101 [ scc.merge] INFO - PR 333 dependabot[bot] 'Bump omero-marshal from `6d44f66` to `57934f0`' 2025-09-29 00:21:09,101 [ scc.merge] INFO 2025-09-29 00:21:09,101 [ scc.merge] INFO Repository: ome/omero-dropbox 2025-09-29 00:21:09,101 [ scc.merge] INFO Already up to date. 2025-09-29 00:21:09,101 [ scc.merge] INFO 2025-09-29 00:21:09,101 [ scc.merge] INFO Merged PRs: 2025-09-29 00:21:09,101 [ scc.merge] INFO - PR 16 joshmoore 'Review all instances of whitelist/blacklist' 2025-09-29 00:21:09,101 [ scc.merge] INFO - PR 26 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-29 00:21:09,102 [ scc.merge] INFO 2025-09-29 00:21:09,102 [ scc.merge] INFO Repository: ome/omero-marshal 2025-09-29 00:21:09,102 [ scc.merge] INFO Excluded PRs: 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 84 joshmoore 'New JSON-LD context-based version' (stage: draft) 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 34 chris-allan 'Initial support for Event' (exclude comment) 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) 2025-09-29 00:21:09,102 [ scc.merge] INFO Already up to date. 2025-09-29 00:21:09,102 [ scc.merge] INFO 2025-09-29 00:21:09,102 [ scc.merge] INFO Merged PRs: 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 69 will-moore 'Roi encoder allows Shape None' 2025-09-29 00:21:09,102 [ scc.merge] INFO 2025-09-29 00:21:09,102 [ scc.merge] INFO Repository: ome/omero-py 2025-09-29 00:21:09,102 [ scc.merge] INFO Excluded PRs: 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 470 multimeric 'Faux import' (user: multimeric) 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 459 Tom-TBT 'Wrapper improvements for ROIs' (stage: draft) 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 450 multimeric 'Add model stubs' (user: multimeric) 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure) 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 299 joshmoore 'Add parents and children to omero obj' (exclude comment) 2025-09-29 00:21:09,102 [ scc.merge] INFO Already up to date. 2025-09-29 00:21:09,102 [ scc.merge] INFO 2025-09-29 00:21:09,102 [ scc.merge] INFO Merged PRs: 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 199 joshmoore 'user: allow setting default group' 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 332 jburel 'Build conda' 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 391 joshmoore 'Add jstack command' 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 408 jburel 'remove deprecated method' 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 478 chris-allan 'Remove Python 2 compat from gateway utilities and scripts tests' 2025-09-29 00:21:09,102 [ scc.merge] INFO 2025-09-29 00:21:09,102 [ scc.merge] INFO Repository: ome/omero-scripts 2025-09-29 00:21:09,102 [ scc.merge] INFO Excluded PRs: 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) 2025-09-29 00:21:09,102 [ scc.merge] INFO Already up to date. 2025-09-29 00:21:09,102 [ scc.merge] INFO 2025-09-29 00:21:09,102 [ scc.merge] INFO Merged PRs: 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2025-09-29 00:21:09,102 [ scc.merge] INFO 2025-09-29 00:21:09,102 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2025-09-29 00:21:09,102 [ scc.merge] INFO 2025-09-29 00:21:09,102 [ scc.merge] INFO Repository: ome/omero-web 2025-09-29 00:21:09,102 [ scc.merge] INFO Excluded PRs: 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 629 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 535 will-moore 'Initial working browser history' (stage: draft) 2025-09-29 00:21:09,102 [ scc.merge] INFO Already up to date. 2025-09-29 00:21:09,102 [ scc.merge] INFO 2025-09-29 00:21:09,102 [ scc.merge] INFO Merged PRs: 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 168 stick 'Changes to nginx @maintenance handler' 2025-09-29 00:21:09,102 [ scc.merge] INFO - PR 527 will-moore 'Add some initial CSP settings to test' 2025-09-29 00:21:09,103 [ scc.merge] INFO - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' 2025-09-29 00:21:09,103 [ scc.merge] INFO - PR 595 sukunis 'linkify supports urls that include {}[] characters' 2025-09-29 00:21:09,103 [ scc.merge] INFO - PR 596 sukunis 'Linkify can parse anchor tag' 2025-09-29 00:21:09,103 [ scc.merge] INFO - PR 602 Tom-TBT 'Inherit all annotations' 2025-09-29 00:21:09,103 [ scc.merge] INFO - PR 604 will-moore 'Right panel perf' 2025-09-29 00:21:09,103 [ scc.merge] INFO - PR 612 will-moore 'Allow top_links to wrap if too many for space' 2025-09-29 00:21:09,103 [ scc.merge] INFO - PR 613 will-moore 'externalInfo display' 2025-09-29 00:21:09,103 [ scc.merge] INFO - PR 619 DavidStirling 'Permit subpackages as app plugins' 2025-09-29 00:21:09,103 [ scc.merge] INFO - PR 628 jburel 'Add protocol required since Django4' 2025-09-29 00:21:09,103 [ scc.merge] INFO - PR 635 will-moore 'Marshal annotations roi shape' 2025-09-29 00:21:09,103 [ scc.merge] INFO 2025-09-29 00:21:09,103 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-09-29 00:21:09,103 [ scc.git] DEBUG Calling 'git remote' 2025-09-29 00:21:09,105 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox 2025-09-29 00:21:09,105 [ scc.git] DEBUG Calling 'git remote' 2025-09-29 00:21:09,107 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-29 00:21:09,107 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal 2025-09-29 00:21:09,107 [ scc.git] DEBUG Calling 'git remote' 2025-09-29 00:21:09,109 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-29 00:21:09,109 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py 2025-09-29 00:21:09,109 [ scc.git] DEBUG Calling 'git remote' 2025-09-29 00:21:09,111 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-29 00:21:09,111 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts 2025-09-29 00:21:09,111 [ scc.git] DEBUG Calling 'git remote' 2025-09-29 00:21:09,113 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-29 00:21:09,113 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web 2025-09-29 00:21:09,113 [ scc.git] DEBUG Calling 'git remote' 2025-09-29 00:21:09,115 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push Update component versions Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.8.1-python.zip ... Traceback (most recent call last): File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module> download_blitz_target() File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target resp = urlopen(loc) ^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 216, in urlopen return opener.open(url, data, timeout) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 525, in open response = meth(req, response) ^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 634, in http_response response = self.parent.error( ^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 563, in error return self._call_chain(*args) ^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 496, in _call_chain result = func(*args) ^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 643, in http_error_default raise HTTPError(req.full_url, code, msg, hdrs, fp) urllib.error.HTTPError: HTTP Error 404: Not Found Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.8.1-python.zip ... Traceback (most recent call last): File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module> download_blitz_target() File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target resp = urlopen(loc) ^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 216, in urlopen return opener.open(url, data, timeout) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 525, in open response = meth(req, response) ^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 634, in http_response response = self.parent.error( ^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 563, in error return self._call_chain(*args) ^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 496, in _call_chain result = func(*args) ^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 643, in http_error_default raise HTTPError(req.full_url, code, msg, hdrs, fp) urllib.error.HTTPError: HTTP Error 404: Not Found grep: build.gradle: No such file or directory Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Commit all component version changes Entering 'omero-dropbox' Entering 'omero-marshal' Entering 'omero-py' Entering 'omero-scripts' Entering 'omero-web' Entering 'omero-dropbox' HEAD detached from 01fa0c5 nothing to commit, working tree clean Entering 'omero-marshal' HEAD detached from 57934f0 nothing to commit, working tree clean Entering 'omero-py' HEAD detached from 780876c5 nothing to commit, working tree clean Entering 'omero-scripts' HEAD detached from 03b9116 nothing to commit, working tree clean Entering 'omero-web' HEAD detached from 2a7c4d2e3 nothing to commit, working tree clean HEAD detached from b68c3cf nothing to commit, working tree clean 2025-09-29 00:21:36,967 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-python-superbuild/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS