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Started by upstream project "BIOFORMATS-test-repo" build number 210 originally caused by: Started by upstream project "Trigger" build number 236 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins11253606991221428074.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33401_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 03:35:07,452 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:35:07,453 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 03:35:07,453 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:35:07,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:35:07,455 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:35:07,456 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:35:07,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:35:07,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:35:07,457 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:35:07,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:35:07,458 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:35:07,458 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:35:07,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:35:07,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:35:07,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:35:07,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:35:07,696 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:35:07,696 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:35:07,696 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:35:07,696 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:35:07,697 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 03:35:07,697 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 03:35:07,698 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 240 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-05 03:35:07,708] [main] java.version = 11.0.16 [testng] 03:35:07,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:35:07,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:35:07,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-05_03-35-07.log] [testng] 03:35:07,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-10-05 03:35:07,763] [main] testng.directory = /data [testng] [2024-10-05 03:35:07,763] [main] testng.configDirectory = /config [testng] [2024-10-05 03:35:07,774] [main] testng.multiplier = 1.0 [testng] [2024-10-05 03:35:07,775] [main] testng.in-memory = false [testng] [2024-10-05 03:35:07,775] [main] testng.allow-missing = false [testng] [2024-10-05 03:35:07,775] [main] user.language = en [testng] [2024-10-05 03:35:07,776] [main] user.country = ${user.country} [testng] [2024-10-05 03:35:07,776] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-05 03:35:45,094] [main] ---------------------------------------- [testng] [2024-10-05 03:35:45,094] [main] Total files: 15735 [testng] [2024-10-05 03:35:45,094] [main] Scan time: 37.318 s (2 ms/file) [testng] [2024-10-05 03:35:45,095] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-05 03:36:16,814] [pool-1-thread-1] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] 03:36:16,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:36:16,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:36:16,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-05_03-36-16.log] [testng] 03:36:16,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e92fe28 - End of configuration. [testng] [2024-10-05 03:36:16,954] [pool-1-thread-12] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] 03:36:16,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:36:16,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:36:16,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-05_03-36-16.log] [testng] 03:36:16,956 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b93c629 - End of configuration. [testng] [2024-10-05 03:36:17,695] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] 03:36:17,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:36:17,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:36:17,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-05_03-36-17.log] [testng] 03:36:17,696 |-INFO in ch.qos.logback.core.sift.SiftProcessor@733bfb4e - End of configuration. [testng] [2024-10-05 03:36:17,854] [pool-1-thread-10] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] 03:36:17,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:36:17,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:36:17,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-05_03-36-17.log] [testng] 03:36:17,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60ad4185 - End of configuration. [testng] [2024-10-05 03:36:18,017] [pool-1-thread-9] Initializing /data/converted/sebastien/F1.tif: [testng] 03:36:18,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:36:18,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:36:18,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-05_03-36-18.log] [testng] 03:36:18,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ae3b761 - End of configuration. [testng] [2024-10-05 03:36:18,198] [pool-1-thread-8] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] 03:36:18,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:36:18,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:36:18,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-05_03-36-18.log] [testng] 03:36:18,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e880bf1 - End of configuration. [testng] [2024-10-05 03:36:18,410] [pool-1-thread-7] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] 03:36:18,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:36:18,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:36:18,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-05_03-36-18.log] [testng] 03:36:18,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51227acc - End of configuration. [testng] [2024-10-05 03:36:18,880] [pool-1-thread-6] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] 03:36:18,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:36:18,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:36:18,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-05_03-36-18.log] [testng] 03:36:18,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46e8bae1 - End of configuration. [testng] [2024-10-05 03:36:19,003] [pool-1-thread-5] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] 03:36:19,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:36:19,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:36:19,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-05_03-36-19.log] [testng] 03:36:19,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61a01686 - End of configuration. [testng] [2024-10-05 03:36:19,404] [pool-1-thread-4] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 03:36:19,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:36:19,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:36:19,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-05_03-36-19.log] [testng] 03:36:19,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f074c3a - End of configuration. [testng] [2024-10-05 03:36:19,689] [pool-1-thread-3] Initializing /data/converted/dietmar/137.tif: [testng] 03:36:19,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:36:19,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:36:19,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-05_03-36-19.log] [testng] 03:36:19,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53b71aed - End of configuration. [testng] [2024-10-05 03:36:19,964] [pool-1-thread-2] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] 03:36:19,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:36:19,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:36:19,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-05_03-36-19.log] [testng] 03:36:19,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@335a23a4 - End of configuration. [testng] [2024-10-05 03:36:27,709] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-10-05 03:36:30,632] [pool-1-thread-10] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-10-05 03:36:31,336] [pool-1-thread-6] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-10-05 03:36:41,997] [pool-1-thread-6] Initializing /data/converted/converted/2chz.tif: [testng] [2024-10-05 03:36:42,680] [pool-1-thread-2] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-10-05 03:36:51,720] [pool-1-thread-2] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-10-05 03:36:56,837] [pool-1-thread-11] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-10-05 03:37:33,351] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-10-05 03:37:58,123] [pool-1-thread-6] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-10-05 03:38:11,021] [pool-1-thread-9] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] [2024-10-05 03:38:19,056] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-10-05 03:38:26,136] [pool-1-thread-10] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-10-05 03:38:57,428] [pool-1-thread-8] Initializing /data/scott/Slide133-11.tif: [testng] [2024-10-05 03:39:18,216] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2024-10-05 03:39:38,793] [pool-1-thread-10] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-10-05 03:39:55,475] [pool-1-thread-10] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-10-05 03:40:07,370] [pool-1-thread-3] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-10-05 03:40:16,775] [pool-1-thread-1] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-10-05 03:40:25,452] [pool-1-thread-10] Initializing /data/scott/Slide133-01.tif: [testng] [2024-10-05 03:40:41,890] [pool-1-thread-1] Initializing /data/converted/sebastien/test.tif: [testng] [2024-10-05 03:40:49,859] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-10-05 03:42:10,933] [pool-1-thread-4] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-10-05 03:43:32,351] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-10-05 03:44:50,803] [pool-1-thread-8] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-10-05 03:45:14,836] [pool-1-thread-8] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-10-05 03:45:47,145] [pool-1-thread-8] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-10-05 03:46:12,157] [pool-1-thread-10] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-10-05 03:46:26,357] [pool-1-thread-5] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-10-05 03:46:27,675] [pool-1-thread-3] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-10-05 03:46:30,603] [pool-1-thread-1] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-10-05 03:46:46,793] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-10-05 03:46:49,255] [pool-1-thread-3] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-10-05 03:46:50,615] [pool-1-thread-5] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-10-05 03:46:52,000] [pool-1-thread-2] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-10-05 03:47:14,921] [pool-1-thread-12] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-10-05 03:47:24,736] [pool-1-thread-8] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-10-05 03:47:26,179] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-10-05 03:47:56,866] [pool-1-thread-8] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-10-05 03:48:01,266] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-10-05 03:48:28,699] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-10-05 03:48:40,725] [pool-1-thread-8] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-10-05 03:48:44,728] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-10-05 03:48:49,217] [pool-1-thread-4] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-10-05 03:49:41,483] [pool-1-thread-5] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-10-05 03:51:18,461] [pool-1-thread-8] Initializing /data/othmar/mozaic.tif: [testng] [2024-10-05 03:52:39,171] [pool-1-thread-1] Initializing /data/converted/michel/d.tif: [testng] [2024-10-05 03:52:58,594] [pool-1-thread-1] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-10-05 03:53:05,104] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-10-05 03:53:37,605] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-10-05 03:53:44,459] [pool-1-thread-10] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-10-05 03:53:45,709] [pool-1-thread-8] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-10-05 03:54:02,756] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-10-05 03:54:04,026] [pool-1-thread-8] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-10-05 03:54:07,347] [pool-1-thread-6] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] [2024-10-05 03:55:57,180] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-10-05 03:56:28,775] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2024-10-05 03:56:29,919] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-10-05 03:57:12,782] [pool-1-thread-3] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-10-05 03:57:29,941] [pool-1-thread-3] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-10-05 03:57:49,761] [pool-1-thread-3] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-10-05 03:57:58,172] [pool-1-thread-7] Initializing /data/converted/michel/a.tif: [testng] [2024-10-05 03:58:10,824] [pool-1-thread-7] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-10-05 03:58:33,115] [pool-1-thread-3] Initializing /data/converted/michel/c.tif: [testng] [2024-10-05 03:58:45,641] [pool-1-thread-10] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-10-05 03:58:51,231] [pool-1-thread-3] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-10-05 03:59:03,141] [pool-1-thread-10] Initializing /data/scott/Slide133-04.tif: [testng] [2024-10-05 03:59:20,448] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-10-05 04:00:02,296] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-10-05 04:00:25,519] [pool-1-thread-6] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-10-05 04:00:31,469] [pool-1-thread-3] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-10-05 04:00:34,640] [pool-1-thread-1] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-10-05 04:00:45,671] [pool-1-thread-3] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-10-05 04:00:52,224] [pool-1-thread-6] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-10-05 04:01:05,808] [pool-1-thread-3] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-10-05 04:01:08,053] [pool-1-thread-6] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-10-05 04:01:34,868] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2024-10-05 04:01:47,187] [pool-1-thread-3] Initializing /data/converted/nicolas/image.tif: [testng] [2024-10-05 04:01:51,294] [pool-1-thread-1] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-10-05 04:02:01,621] [pool-1-thread-3] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-10-05 04:02:04,636] [pool-1-thread-1] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-10-05 04:03:47,711] [pool-1-thread-10] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-10-05 04:04:04,401] [pool-1-thread-10] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-10-05 04:04:09,167] [pool-1-thread-8] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-10-05 04:04:20,613] [pool-1-thread-9] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-10-05 04:04:22,435] [pool-1-thread-10] Initializing /data/converted/converted/damian.tif: [testng] [2024-10-05 04:04:34,099] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-10-05 04:05:20,686] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-10-05 04:05:30,102] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-10-05 04:05:44,543] [pool-1-thread-1] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-10-05 04:05:50,173] [pool-1-thread-6] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-10-05 04:06:52,614] [pool-1-thread-8] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-10-05 04:07:23,073] [pool-1-thread-8] Initializing /data/converted/michel/e.tif: [testng] [2024-10-05 04:07:26,126] [pool-1-thread-12] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-10-05 04:07:47,775] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-10-05 04:08:03,017] [pool-1-thread-8] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-10-05 04:08:34,755] [pool-1-thread-6] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2024-10-05 04:08:42,349] [pool-1-thread-2] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-10-05 04:08:57,797] [pool-1-thread-2] Initializing /data/scott/Slide133-08.tif: [testng] [2024-10-05 04:09:16,334] [pool-1-thread-2] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-10-05 04:09:39,141] [pool-1-thread-2] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-10-05 04:09:45,512] [pool-1-thread-2] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-10-05 04:09:46,742] [pool-1-thread-7] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-10-05 04:09:49,312] [pool-1-thread-10] Initializing /data/converted/michel/b.tif: [testng] [2024-10-05 04:10:12,978] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-10-05 04:10:53,254] [pool-1-thread-3] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-10-05 04:10:57,188] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-10-05 04:11:36,257] [pool-1-thread-4] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-10-05 04:12:22,704] [pool-1-thread-2] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-10-05 04:12:25,469] [pool-1-thread-1] Initializing /data/converted/dietmar/138.tif: [testng] [2024-10-05 04:12:52,217] [pool-1-thread-12] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-10-05 04:13:06,786] [pool-1-thread-12] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2024-10-05 04:14:21,006] [pool-1-thread-8] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-10-05 04:15:28,292] [pool-1-thread-8] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] 04:37:28,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:37:28,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:37:28,150 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-05_04-37-28.log] [testng] 04:37:28,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@570f2cf7 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 62 minutes 24 seconds Finished: SUCCESS