18:15:34 Started by user devspace
18:15:34 Running as SYSTEM
18:15:34 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
18:15:34 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11787987406768438970.sh
18:15:34 + source /home/settings.env
18:15:35 ++ OMERO_DB_HOST=pg
18:15:35 ++ OMERO_DB_USER=postgres
18:15:35 ++ OMERO_DB_PASS=
18:15:35 ++ OMERO_ROOT_PASS=omero
18:15:35 ++ OMERO_DATA_DIR=/OMERO
18:15:35 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
18:15:35 + OMERO_DB_NAME=OMERO-server
18:15:35 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
18:15:35 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
18:15:35 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
18:15:35 + OMERO_DATA_DIR=/home/omero/omero-server-data
18:15:35 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
18:15:35 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
18:15:35 ++ deactivate nondestructive
18:15:35 ++ '[' -n '' ']'
18:15:35 ++ '[' -n '' ']'
18:15:35 ++ '[' -n /bin/bash -o -n '' ']'
18:15:35 ++ hash -r
18:15:35 ++ '[' -n '' ']'
18:15:35 ++ unset VIRTUAL_ENV
18:15:35 ++ '[' '!' nondestructive = nondestructive ']'
18:15:35 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
18:15:35 ++ export VIRTUAL_ENV
18:15:35 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
18:15:35 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
18:15:35 ++ export PATH
18:15:35 ++ '[' -n '' ']'
18:15:35 ++ '[' -z '' ']'
18:15:35 ++ _OLD_VIRTUAL_PS1=
18:15:35 ++ PS1='(.venv3) '
18:15:35 ++ export PS1
18:15:35 ++ '[' -n /bin/bash -o -n '' ']'
18:15:35 ++ hash -r
18:15:35 + omero admin stop
18:15:36 Server not running
18:15:37 + echo not running
18:15:37 not running
18:15:37 + sleep 5
18:15:42 + deactivate
18:15:42 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
18:15:42 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
18:15:42 + export PATH
18:15:42 + unset _OLD_VIRTUAL_PATH
18:15:42 + '[' -n '' ']'
18:15:42 + '[' -n /bin/bash -o -n '' ']'
18:15:42 + hash -r
18:15:42 + '[' -n '' ']'
18:15:42 + unset VIRTUAL_ENV
18:15:42 + '[' '!' '' = nondestructive ']'
18:15:42 + unset -f deactivate
18:15:42 + rm -rf /home/omero/workspace/OMERO-server/.venv3
18:15:42 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
18:15:46 + '[' false = true ']'
18:15:46 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
18:15:46 Skipping PURGE_DATA:CleanDbAndRepo
18:15:46 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.6.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.27.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
18:15:51 Copied 1 artifact from "OMERO-build" build number 180
18:15:52 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 178
18:15:52 Copied 2 artifacts from "OMERO-build-build" build number 186
18:15:52 [OMERO-server] $ /bin/bash -xe /tmp/jenkins8583716421277382451.sh
18:15:52 + source /home/settings.env
18:15:52 ++ OMERO_DB_HOST=pg
18:15:52 ++ OMERO_DB_USER=postgres
18:15:52 ++ OMERO_DB_PASS=
18:15:52 ++ OMERO_ROOT_PASS=omero
18:15:52 ++ OMERO_DATA_DIR=/OMERO
18:15:52 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
18:15:52 + OMERO_DB_NAME=OMERO-server
18:15:52 + OMERO_DATA_DIR=/home/omero/omero-server-data
18:15:52 + mkdir -p /home/omero/omero-server-data
18:15:52 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
18:15:52 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
18:15:52 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
18:15:52 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
18:15:52 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
18:15:52 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
18:15:52 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
18:15:52 ++ ls OMERO.server-5.6.3-508-77df235826-ice36.zip
18:15:52 + ZIP=OMERO.server-5.6.3-508-77df235826-ice36.zip
18:15:52 + '[' '!' -z '' ']'
18:15:52 + DIST=OMERO.server-5.6.3-508-77df235826-ice36
18:15:52 + unzip OMERO.server-5.6.3-508-77df235826-ice36.zip
18:15:52 Archive: OMERO.server-5.6.3-508-77df235826-ice36.zip
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/etc/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/etc/blitz/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/etc/grid/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/etc/profiles/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/etc/templates/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/etc/templates/error/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/etc/templates/grid/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/lib/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/lib/scripts/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/lib/scripts/luts/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/lib/scripts/luts/janelia/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/lib/scripts/luts/ncsa_paledit/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/lib/scripts/luts/wcif/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/lib/scripts/omero/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/lib/scripts/omero/analysis_scripts/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/lib/scripts/omero/annotation_scripts/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/lib/scripts/omero/export_scripts/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/lib/scripts/omero/figure_scripts/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/lib/scripts/omero/import_scripts/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/lib/scripts/omero/util_scripts/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/share/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/misc/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__1/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__10/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__11/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__2/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__3/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__4/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__5/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__6/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__7/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__8/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__9/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3__4/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3__5/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3__6/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3__7/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO4.1__0/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO4.2__0/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO4.2__0/t/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO4.3__0/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO4.4__0/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO4__0/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.0__0/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.1__1/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.2__0/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.3__0/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4DEV__1/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4DEV__2/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4DEV__3/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4__0/
18:15:52 creating: OMERO.server-5.6.3-508-77df235826-ice36/var/
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/LICENSE.txt
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/backup.cfg
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/blitz/mail-senders.example
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/blitz/mail-server.example
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/build.properties
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/env.bat
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/env.sh
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/hibernate.properties
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/ice.config
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/logback-cli.xml
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/logback-indexing-cli.xml
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/logback-indexing.xml
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/logback.xml
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/mime.types
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/node1.cfg
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/node2.cfg
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/omero.properties
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/profiles/psql
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/rollover.cfg
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/templates/Windows.cfg
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/templates/error/maintainance.html
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/templates/grid/README
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/templates/grid/default.xml
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/templates/grid/templates.xml
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/templates/grid/windefault.xml
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/templates/ice.config
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/templates/internal.cfg
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/templates/master.cfg
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/templates/robot.template
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/etc/testdropbox.config
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/history.rst
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/OMEZarrReader.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/activation.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/aggdesigner-algorithm.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/aircompressor.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/annotations.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/antlr.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/aopalliance.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/avatica-core.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/avatica-metrics.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/aws-java-sdk-core.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/aws-java-sdk-kms.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/aws-java-sdk-s3.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/base.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-all.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-anim.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-awt-util.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-bridge.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-codec.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-constants.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-css.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-dom.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-ext.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-extension.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-gui-util.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-gvt.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-i18n.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-parser.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-rasterizer-ext.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-rasterizer.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-script.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-slideshow.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-squiggle-ext.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-squiggle.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-svg-dom.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-svgbrowser.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-svggen.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-svgpp.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-svgrasterizer.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-swing.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-transcoder.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-ttf2svg.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-util.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/batik-xml.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/btm.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/bufr.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/c3p0.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/calcite-core.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/calcite-linq4j.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/cdm-core.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/checker-qual.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/commons-beanutils.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/commons-codec.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/commons-collections.jar
18:15:52 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/client/commons-collections4.jar
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18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/protobuf-java.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/quartz.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/re2j.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/reflectasm.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/rhino.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/serializer.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/sketches-core.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/slf4j-api.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/snakeyaml.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/solr-analysis-extras.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/solr-commons-csv.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/solr-core.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/solr-solrj.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/specification.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/spring-aop.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/spring-beans.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/spring-context-support.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/spring-context.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/spring-core.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/spring-expression.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/spring-jdbc.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/spring-jms.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/spring-ldap-core.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/spring-messaging.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/spring-orm.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/spring-security-core.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/spring-security-ldap.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/spring-tx.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/sqlite-jdbc.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/subethasmtp.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/turbojpeg.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/udunits.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/xalan.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/xercesImpl.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/xml-apis-ext.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/xml-apis.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/xmlgraphics-commons.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/xmpcore.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/lib/server/xpp3.jar
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/README
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/agpl.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/antlr.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/apache-v1.1.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/apache-v2.0.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/asm.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/bouncy_castle_license.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/bsd.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/cddl-v1.0.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/cpl-v10.html
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/crystalclear.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/django.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/dom4j.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/epl-v1.0.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/fbsd.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/freemarker.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/gpl-v2.0.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/gpl.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/gtest.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/iconsweets_license.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/jamon.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/jmock.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/jquery.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/jtidy.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/lgpl-3.0.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/lgpl-v2.0.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/lgpl-v2.1.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/lgpl-v3.0.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/lgpl.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/matplotlib.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/mit.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/mpl-v1_0.htm
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/npl-1_1.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/path.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/pil.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/postgresql.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/psf-v2.0.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/psf-v2.5.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/scons.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/slf4j.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/tablelayout.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/which.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/zlib-libpng.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/share/licenses/zpl-v2.1.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/README.txt
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/misc/Makefile
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/misc/current.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/misc/enums.py
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4__0/psql-header.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4__0/schema.sql
18:15:54 inflating: OMERO.server-5.6.3-508-77df235826-ice36/sql/psql/OMERO5.4__0/views.sql
18:15:54 + rm -f OMERO.server-5.6.3-508-77df235826-ice36.zip
18:15:54 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-508-77df235826-ice36 /home/omero/workspace/OMERO-server/OMERO.server
18:15:54 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
18:15:54 ++ deactivate nondestructive
18:15:54 ++ '[' -n '' ']'
18:15:54 ++ '[' -n '' ']'
18:15:54 ++ '[' -n /bin/bash -o -n '' ']'
18:15:54 ++ hash -r
18:15:54 ++ '[' -n '' ']'
18:15:54 ++ unset VIRTUAL_ENV
18:15:54 ++ '[' '!' nondestructive = nondestructive ']'
18:15:54 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
18:15:54 ++ export VIRTUAL_ENV
18:15:54 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
18:15:54 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
18:15:54 ++ export PATH
18:15:54 ++ '[' -n '' ']'
18:15:54 ++ '[' -z '' ']'
18:15:54 ++ _OLD_VIRTUAL_PS1=
18:15:54 ++ PS1='(.venv3) '
18:15:54 ++ export PS1
18:15:54 ++ '[' -n /bin/bash -o -n '' ']'
18:15:54 ++ hash -r
18:15:54 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
18:15:55 Collecting zeroc-ice==3.6.5
18:15:56 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
18:15:57 Installing collected packages: zeroc-ice
18:15:58 Successfully installed zeroc-ice-3.6.5
18:15:58 + pip install -U pip future
18:15:58 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
18:15:59 Collecting pip
18:15:59 Using cached pip-24.2-py3-none-any.whl (1.8 MB)
18:15:59 Collecting future
18:15:59 Using cached future-1.0.0-py3-none-any.whl (491 kB)
18:15:59 Installing collected packages: pip, future
18:15:59 Attempting uninstall: pip
18:15:59 Found existing installation: pip 21.2.3
18:15:59 Uninstalling pip-21.2.3:
18:15:59 Successfully uninstalled pip-21.2.3
18:16:00 Successfully installed future-1.0.0 pip-24.2
18:16:00 + pip install markdown
18:16:01 Collecting markdown
18:16:01 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB)
18:16:01 Collecting importlib-metadata>=4.4 (from markdown)
18:16:01 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)
18:16:01 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown)
18:16:01 Using cached zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB)
18:16:01 Using cached Markdown-3.7-py3-none-any.whl (106 kB)
18:16:01 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
18:16:01 Using cached zipp-3.20.2-py3-none-any.whl (9.2 kB)
18:16:01 Installing collected packages: zipp, importlib-metadata, markdown
18:16:01 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.20.2
18:16:01 + pip install reportlab
18:16:02 Collecting reportlab
18:16:02 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB)
18:16:02 Collecting pillow>=9.0.0 (from reportlab)
18:16:02 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
18:16:02 Collecting chardet (from reportlab)
18:16:02 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
18:16:02 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB)
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18:16:03 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
18:16:03 Installing collected packages: pillow, chardet, reportlab
18:16:04 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2
18:16:04 + pip install omego
18:16:05 Collecting omego
18:16:05 Using cached omego-0.7.0-py3-none-any.whl
18:16:05 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
18:16:05 Collecting yaclifw>=0.1.1 (from omego)
18:16:05 Using cached yaclifw-0.2.0-py3-none-any.whl
18:16:05 Collecting six (from yaclifw>=0.1.1->omego)
18:16:05 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
18:16:05 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
18:16:05 Installing collected packages: six, yaclifw, omego
18:16:05 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
18:16:05 + pip install tables
18:16:05 Collecting tables
18:16:05 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
18:16:06 Collecting numpy>=1.19.0 (from tables)
18:16:06 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
18:16:06 Collecting numexpr>=2.6.2 (from tables)
18:16:06 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB)
18:16:06 Collecting packaging (from tables)
18:16:06 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
18:16:06 Collecting py-cpuinfo (from tables)
18:16:06 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
18:16:06 Collecting blosc2>=2.3.0 (from tables)
18:16:06 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
18:16:06 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
18:16:06 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
18:16:06 Collecting msgpack (from blosc2>=2.3.0->tables)
18:16:06 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
18:16:06 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
18:16:06 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
18:16:06 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB)
18:16:06 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB)
18:16:07 Using cached packaging-24.1-py3-none-any.whl (53 kB)
18:16:07 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
18:16:07 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
18:16:07 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB)
18:16:07 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
18:16:10 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.8 numexpr-2.10.1 numpy-2.0.2 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2
18:16:10 + pip install jinja2
18:16:11 Collecting jinja2
18:16:11 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
18:16:11 Collecting MarkupSafe>=2.0 (from jinja2)
18:16:11 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
18:16:11 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
18:16:11 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
18:16:11 Installing collected packages: MarkupSafe, jinja2
18:16:11 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4
18:16:11 + pip install omero-py
18:16:12 Collecting omero-py
18:16:12 Using cached omero_py-5.19.5-py3-none-any.whl.metadata (6.3 kB)
18:16:12 Collecting urllib3<2 (from omero-py)
18:16:12 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
18:16:12 Collecting appdirs (from omero-py)
18:16:12 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
18:16:12 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
18:16:12 Collecting numpy<2 (from omero-py)
18:16:12 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
18:16:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0)
18:16:12 Collecting PyYAML (from omero-py)
18:16:12 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
18:16:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
18:16:12 Collecting requests (from omero-py)
18:16:12 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
18:16:12 Collecting portalocker (from omero-py)
18:16:12 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB)
18:16:12 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
18:16:12 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
18:16:12 Collecting idna<4,>=2.5 (from requests->omero-py)
18:16:12 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
18:16:13 Collecting certifi>=2017.4.17 (from requests->omero-py)
18:16:13 Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB)
18:16:13 Using cached omero_py-5.19.5-py3-none-any.whl (2.8 MB)
18:16:13 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
18:16:13 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
18:16:13 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
18:16:13 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB)
18:16:13 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
18:16:13 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
18:16:13 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB)
18:16:13 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
18:16:13 Using cached idna-3.10-py3-none-any.whl (70 kB)
18:16:13 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py
18:16:13 Attempting uninstall: numpy
18:16:13 Found existing installation: numpy 2.0.2
18:16:14 Uninstalling numpy-2.0.2:
18:16:14 Successfully uninstalled numpy-2.0.2
18:16:18 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.8.30 charset-normalizer-3.3.2 idna-3.10 numpy-1.26.4 omero-py-5.19.5 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.20
18:16:18 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
18:16:18 Collecting omero-metadata
18:16:18 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-s3mmlz1q/omero-metadata_eaaa56df97a549ff8c829865a6480c15
18:16:18 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-s3mmlz1q/omero-metadata_eaaa56df97a549ff8c829865a6480c15
18:16:20 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit c7d8e47a30f2ee2deac96487e2f20a9f61f97586
18:16:20 Installing build dependencies: started
18:16:22 Installing build dependencies: finished with status 'done'
18:16:22 Getting requirements to build wheel: started
18:16:22 Getting requirements to build wheel: finished with status 'done'
18:16:22 Preparing metadata (pyproject.toml): started
18:16:22 Preparing metadata (pyproject.toml): finished with status 'done'
18:16:22 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.5)
18:16:22 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2)
18:16:22 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4)
18:16:23 Collecting pandas (from omero-metadata)
18:16:23 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
18:16:23 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20)
18:16:23 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
18:16:23 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
18:16:23 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
18:16:23 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0)
18:16:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
18:16:23 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3)
18:16:23 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1)
18:16:23 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
18:16:23 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
18:16:23 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
18:16:23 Collecting pytz>=2020.1 (from pandas->omero-metadata)
18:16:23 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)
18:16:23 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
18:16:23 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
18:16:23 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
18:16:23 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
18:16:23 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10)
18:16:23 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.8.30)
18:16:23 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
18:16:23 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
18:16:24 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB)
18:16:24 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
18:16:24 Building wheels for collected packages: omero-metadata
18:16:24 Building wheel for omero-metadata (pyproject.toml): started
18:16:24 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
18:16:24 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39187 sha256=25fc3730ffd286539e62d92c69ca13219a4fb3ab738b613f0e0db4a23f189852
18:16:24 Stored in directory: /tmp/pip-ephem-wheel-cache-df87_o_l/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
18:16:24 Successfully built omero-metadata
18:16:24 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
18:16:29 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2024.1
18:16:29 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
18:16:29 Collecting omero-cli-render
18:16:29 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-7kh63_h7/omero-cli-render_fa322833fbf64ef6b478d3cc01ba96a4
18:16:29 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-7kh63_h7/omero-cli-render_fa322833fbf64ef6b478d3cc01ba96a4
18:16:30 Running command git checkout -b merge_ci --track origin/merge_ci
18:16:31 Switched to a new branch 'merge_ci'
18:16:31 branch 'merge_ci' set up to track 'origin/merge_ci'.
18:16:31 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit a1dbbcdce1cd886620873dc069675d9b013ba418
18:16:31 Installing build dependencies: started
18:16:32 Installing build dependencies: finished with status 'done'
18:16:32 Getting requirements to build wheel: started
18:16:33 Getting requirements to build wheel: finished with status 'done'
18:16:33 Preparing metadata (pyproject.toml): started
18:16:33 Preparing metadata (pyproject.toml): finished with status 'done'
18:16:33 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2)
18:16:33 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.5)
18:16:33 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20)
18:16:33 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
18:16:33 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
18:16:33 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
18:16:33 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0)
18:16:33 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
18:16:33 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3)
18:16:33 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1)
18:16:33 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
18:16:33 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10)
18:16:33 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.8.30)
18:16:33 Building wheels for collected packages: omero-cli-render
18:16:33 Building wheel for omero-cli-render (pyproject.toml): started
18:16:33 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
18:16:33 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=18031 sha256=2ece696f7b2ec8b3b5428a949f3550f0baf79c7c8f9b9f025ecb465f40bc0e1e
18:16:33 Stored in directory: /tmp/pip-ephem-wheel-cache-flrhz6vo/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
18:16:33 Successfully built omero-cli-render
18:16:33 Installing collected packages: omero-cli-render
18:16:33 Successfully installed omero-cli-render-0.8.2.dev0
18:16:33 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
18:16:34 Collecting omero-cli-duplicate
18:16:34 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-xf9h0x_o/omero-cli-duplicate_34fc22e32d9b4831b11c6db6cba473ea
18:16:34 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-xf9h0x_o/omero-cli-duplicate_34fc22e32d9b4831b11c6db6cba473ea
18:16:34 Running command git checkout -b merge_ci --track origin/merge_ci
18:16:35 Switched to a new branch 'merge_ci'
18:16:35 branch 'merge_ci' set up to track 'origin/merge_ci'.
18:16:35 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 8bb041b04d67ebe67107339ba929b05e2f5cef5e
18:16:35 Installing build dependencies: started
18:16:36 Installing build dependencies: finished with status 'done'
18:16:36 Getting requirements to build wheel: started
18:16:36 Getting requirements to build wheel: finished with status 'done'
18:16:36 Preparing metadata (pyproject.toml): started
18:16:37 Preparing metadata (pyproject.toml): finished with status 'done'
18:16:37 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.5)
18:16:37 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
18:16:37 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
18:16:37 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
18:16:37 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
18:16:37 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0)
18:16:37 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
18:16:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
18:16:37 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
18:16:37 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1)
18:16:37 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
18:16:37 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
18:16:37 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30)
18:16:37 Building wheels for collected packages: omero-cli-duplicate
18:16:37 Building wheel for omero-cli-duplicate (pyproject.toml): started
18:16:37 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
18:16:37 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=1942765311bd09ce742818d1a020c4f98e27dbea084ed6d122fc89c38bf98120
18:16:37 Stored in directory: /tmp/pip-ephem-wheel-cache-nsi8vmy5/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
18:16:37 Successfully built omero-cli-duplicate
18:16:37 Installing collected packages: omero-cli-duplicate
18:16:37 Successfully installed omero-cli-duplicate-0.4.1.dev0
18:16:37 + pip install omero-certificates
18:16:38 Collecting omero-certificates
18:16:38 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
18:16:38 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.5)
18:16:38 Collecting distro==1.8.0 (from omero-certificates)
18:16:38 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
18:16:38 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
18:16:38 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
18:16:38 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
18:16:38 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
18:16:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0)
18:16:38 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
18:16:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
18:16:38 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
18:16:38 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1)
18:16:38 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
18:16:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
18:16:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30)
18:16:38 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
18:16:38 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
18:16:38 Installing collected packages: distro, omero-certificates
18:16:38 Successfully installed distro-1.8.0 omero-certificates-0.3.2
18:16:38 + for x in *.tar.gz
18:16:38 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
18:16:38 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
18:16:38 Installing build dependencies: started
18:16:40 Installing build dependencies: finished with status 'done'
18:16:40 Getting requirements to build wheel: started
18:16:40 Getting requirements to build wheel: finished with status 'done'
18:16:40 Preparing metadata (pyproject.toml): started
18:16:41 Preparing metadata (pyproject.toml): finished with status 'done'
18:16:41 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.5)
18:16:41 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
18:16:41 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
18:16:41 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
18:16:41 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
18:16:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0)
18:16:41 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
18:16:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
18:16:41 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
18:16:41 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1)
18:16:41 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2)
18:16:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
18:16:41 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30)
18:16:41 Building wheels for collected packages: omero-dropbox
18:16:41 Building wheel for omero-dropbox (pyproject.toml): started
18:16:41 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
18:16:41 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49056 sha256=f24a89bc1d8902b7adc1026bdaf1114477cfd46bcb73c440e644856fd7bcd769
18:16:41 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079
18:16:41 Successfully built omero-dropbox
18:16:41 Installing collected packages: omero-dropbox
18:16:41 Successfully installed omero-dropbox-5.7.1.dev0
18:16:41 + for x in *.tar.gz
18:16:41 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
18:16:42 Processing ./omero_marshal-0.9.1.dev0.tar.gz
18:16:42 Installing build dependencies: started
18:16:43 Installing build dependencies: finished with status 'done'
18:16:43 Getting requirements to build wheel: started
18:16:44 Getting requirements to build wheel: finished with status 'done'
18:16:44 Preparing metadata (pyproject.toml): started
18:16:44 Preparing metadata (pyproject.toml): finished with status 'done'
18:16:44 Building wheels for collected packages: omero_marshal
18:16:44 Building wheel for omero_marshal (pyproject.toml): started
18:16:44 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
18:16:44 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88030 sha256=c22d3a514a843e5f25da8c5dcab402853873c45f6b05cafff17cc6892dab8881
18:16:44 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
18:16:44 Successfully built omero_marshal
18:16:44 Installing collected packages: omero_marshal
18:16:44 Successfully installed omero_marshal-0.9.1.dev0
18:16:44 + for x in *.tar.gz
18:16:44 + pip install -U omero_py-5.19.6.dev0.tar.gz
18:16:45 Processing ./omero_py-5.19.6.dev0.tar.gz
18:16:45 Installing build dependencies: started
18:16:47 Installing build dependencies: finished with status 'done'
18:16:47 Getting requirements to build wheel: started
18:16:47 Getting requirements to build wheel: finished with status 'done'
18:16:47 Preparing metadata (pyproject.toml): started
18:16:47 Preparing metadata (pyproject.toml): finished with status 'done'
18:16:47 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.20)
18:16:47 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.4.4)
18:16:47 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.0.0)
18:16:47 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.4)
18:16:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (10.4.0)
18:16:47 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (6.0.2)
18:16:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.6.5)
18:16:47 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.32.3)
18:16:47 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.10.1)
18:16:47 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.3.2)
18:16:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.10)
18:16:47 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (2024.8.30)
18:16:47 Building wheels for collected packages: omero-py
18:16:47 Building wheel for omero-py (pyproject.toml): started
18:16:48 Building wheel for omero-py (pyproject.toml): finished with status 'done'
18:16:48 Created wheel for omero-py: filename=omero_py-5.19.6.dev0-py3-none-any.whl size=2782852 sha256=9dc341045e9823e5e13e918d5e1efb9efdb11a58ac791c46a654c22f2f9f74d8
18:16:48 Stored in directory: /home/omero/.cache/pip/wheels/80/e5/37/a3ff2b54d2fa16a058bb39e8eb6b77b050109520fb9f16931d
18:16:48 Successfully built omero-py
18:16:49 Installing collected packages: omero-py
18:16:49 Attempting uninstall: omero-py
18:16:49 Found existing installation: omero-py 5.19.5
18:16:49 Uninstalling omero-py-5.19.5:
18:16:49 Successfully uninstalled omero-py-5.19.5
18:16:51 Successfully installed omero-py-5.19.6.dev0
18:16:51 + for x in *.tar.gz
18:16:51 + pip install -U omero_scripts-5.8.4.dev0.tar.gz
18:16:51 Processing ./omero_scripts-5.8.4.dev0.tar.gz
18:16:51 Installing build dependencies: started
18:16:53 Installing build dependencies: finished with status 'done'
18:16:53 Getting requirements to build wheel: started
18:16:53 Getting requirements to build wheel: finished with status 'done'
18:16:53 Preparing metadata (pyproject.toml): started
18:16:53 Preparing metadata (pyproject.toml): finished with status 'done'
18:16:53 Building wheels for collected packages: omero-scripts
18:16:53 Building wheel for omero-scripts (pyproject.toml): started
18:16:54 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
18:16:54 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116644 sha256=a380c797222e77414d9f9fb1222bda907b0b719a50f3e53ee0a11b02347aba15
18:16:54 Stored in directory: /home/omero/.cache/pip/wheels/50/80/aa/1e175e4f2a5b0a5343d01937a727d990d08c8e12000390ad9c
18:16:54 Successfully built omero-scripts
18:16:54 Installing collected packages: omero-scripts
18:16:54 Successfully installed omero-scripts-5.8.4.dev0
18:16:54 + for x in *.tar.gz
18:16:54 + pip install -U omero_web-5.27.3.dev0.tar.gz
18:16:54 Processing ./omero_web-5.27.3.dev0.tar.gz
18:16:55 Installing build dependencies: started
18:16:56 Installing build dependencies: finished with status 'done'
18:16:56 Getting requirements to build wheel: started
18:16:57 Getting requirements to build wheel: finished with status 'done'
18:16:57 Preparing metadata (pyproject.toml): started
18:16:57 Preparing metadata (pyproject.toml): finished with status 'done'
18:16:57 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (5.19.6.dev0)
18:16:57 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.27.3.dev0)
18:16:57 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
18:16:58 Collecting Django<4.3,>=4.2.3 (from omero-web==5.27.3.dev0)
18:16:58 Using cached Django-4.2.16-py3-none-any.whl.metadata (4.1 kB)
18:16:58 Collecting django-pipeline==2.1.0 (from omero-web==5.27.3.dev0)
18:16:58 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
18:16:58 Collecting django-cors-headers==3.7.0 (from omero-web==5.27.3.dev0)
18:16:58 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
18:16:58 Collecting django-csp (from omero-web==5.27.3.dev0)
18:16:58 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
18:16:58 Collecting whitenoise>=5.3.0 (from omero-web==5.27.3.dev0)
18:16:58 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB)
18:16:58 Collecting gunicorn>=19.3 (from omero-web==5.27.3.dev0)
18:16:58 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
18:16:58 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.1.dev0)
18:16:58 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (10.4.0)
18:16:58 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2024.2)
18:16:58 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.10.1)
18:16:58 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (24.1)
18:16:58 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
18:16:58 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
18:16:58 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
18:16:58 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB)
18:16:58 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.20)
18:16:58 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.4.4)
18:16:58 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.0.0)
18:16:58 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.4)
18:16:58 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (6.0.2)
18:16:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.6.5)
18:16:58 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (2.32.3)
18:16:58 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.3.dev0)
18:16:58 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
18:16:58 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.3.2)
18:16:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.10)
18:16:58 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (2024.8.30)
18:16:58 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
18:16:58 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
18:16:58 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
18:16:58 Using cached Django-4.2.16-py3-none-any.whl (8.0 MB)
18:16:59 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
18:16:59 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB)
18:16:59 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
18:16:59 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
18:16:59 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB)
18:16:59 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
18:16:59 Building wheels for collected packages: omero-web
18:16:59 Building wheel for omero-web (pyproject.toml): started
18:17:00 Building wheel for omero-web (pyproject.toml): finished with status 'done'
18:17:00 Created wheel for omero-web: filename=omero_web-5.27.3.dev0-py3-none-any.whl size=2766665 sha256=7b2ec9856c858823e78bce2cc4ebbdb6604d456b23f20ddb4ad3a386c9e9fd9a
18:17:00 Stored in directory: /home/omero/.cache/pip/wheels/ae/1e/5f/7127f5403b089e5e8280a504b3d30303e78d1102aa8854c22b
18:17:00 Successfully built omero-web
18:17:00 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
18:17:03 Successfully installed Django-4.2.16 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-23.0.0 omero-web-5.27.3.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0
18:17:03 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
18:17:04 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
18:17:04 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
18:17:04 --2024-09-19 18:17:04-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
18:17:04 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.110.133, ...
18:17:04 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
18:17:04 HTTP request sent, awaiting response... 200 OK
18:17:04 Length: 98962 (97K) [text/plain]
18:17:04 Saving to: ‘Figure_To_Pdf.py’
18:17:04
18:17:04 0K .......... .......... .......... .......... .......... 51% 1.96M 0s
18:17:04 50K .......... .......... .......... .......... ...... 100% 19.0M=0.03s
18:17:04
18:17:04 2024-09-19 18:17:04 (3.46 MB/s) - ‘Figure_To_Pdf.py’ saved [98962/98962]
18:17:04
18:17:04 + chmod 755 Figure_To_Pdf.py
18:17:04 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
18:17:04 + omero config set omero.db.name OMERO-server
18:17:06 + omero config set omero.db.host pg
18:17:07 + omero config set omero.db.user postgres
18:17:08 + omero config set omero.data.dir /home/omero/omero-server-data
18:17:10 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
18:17:11 + omero config set omero.db.poolsize 25
18:17:13 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
18:17:14 + omero config set omero.security.trustStorePassword changeit
18:17:16 + omero config set omero.mail.config true
18:17:17 + omero config set omero.mail.from qa@openmicroscopy.org.uk
18:17:19 + omero config set omero.mail.host smtp.dundee.ac.uk
18:17:20 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
18:17:21 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
18:17:23 + omero certificates
18:17:24 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
18:17:24 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
18:17:24 + '[' false = true ']'
18:17:24 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
18:17:24 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
18:17:24 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
18:17:25 2024-09-19 18:17:25,174 [ omego.db] DEBUG dbcommand => upgrade
18:17:25 2024-09-19 18:17:25,174 [ omego.db] DEBUG dbhost => localhost
18:17:25 2024-09-19 18:17:25,174 [ omego.db] DEBUG dbname => OMERO-server
18:17:25 2024-09-19 18:17:25,174 [ omego.db] DEBUG dbpass => omero
18:17:25 2024-09-19 18:17:25,174 [ omego.db] DEBUG dbuser => omero
18:17:25 2024-09-19 18:17:25,174 [ omego.db] DEBUG rootpass => omero
18:17:25 2024-09-19 18:17:25,174 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
18:17:25 2024-09-19 18:17:25,174 [omego.extern] INFO Executing : omero version
18:17:26 OMERO.py version:
18:17:26 OMERO.server version:
18:17:26 5.6.3-508-77df235826-ice36
18:17:26 5.19.6.dev0
18:17:26 2024-09-19 18:17:26,589 [omego.extern] INFO Completed [1.414 s]
18:17:26 2024-09-19 18:17:26,589 [omego.extern] DEBUG Using omero CLI from omero
18:17:26 2024-09-19 18:17:26,589 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
18:17:26 2024-09-19 18:17:26,590 [omego.extern] INFO Running [current environment]: omero config get --show-password
18:17:26 2024-09-19 18:17:26,590 [omego.extern] INFO Executing : omero config get --show-password
18:17:27 2024-09-19 18:17:27,899 [omego.extern] INFO Completed [1.309 s]
18:17:27 2024-09-19 18:17:27,899 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
18:17:27 2024-09-19 18:17:27,900 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
18:17:28 2024-09-19 18:17:28,055 [omego.extern] INFO Completed [0.155 s]
18:17:28 2024-09-19 18:17:28,055 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n'
18:17:28 2024-09-19 18:17:28,055 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2
18:17:28
18:17:28 2024-09-19 18:17:28,055 [omego.extern] INFO Running [current environment]: omero config get --show-password
18:17:28 2024-09-19 18:17:28,056 [omego.extern] INFO Executing : omero config get --show-password
18:17:29 2024-09-19 18:17:29,352 [omego.extern] INFO Completed [1.296 s]
18:17:29 2024-09-19 18:17:29,352 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
18:17:29 2024-09-19 18:17:29,353 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
18:17:29 2024-09-19 18:17:29,684 [omego.extern] INFO Completed [0.331 s]
18:17:29 2024-09-19 18:17:29,684 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.3") at port "5432".\n'
18:17:29 2024-09-19 18:17:29,684 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
18:17:29 2024-09-19 18:17:29,684 [omego.extern] INFO Running [current environment]: omero config get --show-password
18:17:29 2024-09-19 18:17:29,684 [omego.extern] INFO Executing : omero config get --show-password
18:17:31 2024-09-19 18:17:31,005 [omego.extern] INFO Completed [1.320 s]
18:17:31 2024-09-19 18:17:31,005 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
18:17:31 2024-09-19 18:17:31,005 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
18:17:31 2024-09-19 18:17:31,396 [omego.extern] INFO Completed [0.390 s]
18:17:31 2024-09-19 18:17:31,396 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
18:17:31 2024-09-19 18:17:31,396 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
18:17:31 2024-09-19 18:17:31,398 [ omego.db] INFO Database is already at OMERO5.4__0
18:17:31 + export LANG=en_US.UTF-8
18:17:31 + LANG=en_US.UTF-8
18:17:31 + export LANGUAGE=en_US:en
18:17:31 + LANGUAGE=en_US:en
18:17:31 + export LC_ALL=en_US.UTF-8
18:17:31 + LC_ALL=en_US.UTF-8
18:17:31 + BUILD_ID=DONT_KILL_ME
18:17:31 + omero admin start
18:17:41 WARNING: lock files in /home/omero/omero-server-data
18:17:41 ----------------------------------------
18:17:41 /home/omero/omero-server-data/.omero/repository/7097ab62-1c9f-4ba2-a5e5-d5b1f868081e/.lock
18:17:41 ----------------------------------------
18:17:41
18:17:41 You may want to stop all server processes and remove
18:17:41 these files manually. Lock files can remain after an
18:17:41 abrupt server outage and are especially frequent on
18:17:41 remotely mounted filesystems like NFS.
18:17:41
18:17:41 No descriptor given. Using etc/grid/default.xml
18:17:51 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
18:17:51 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
18:17:51 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
18:17:51 Waiting on startup. Use CTRL-C to exit
18:17:51 + omero admin waitup
18:17:52 Waiting on startup. Use CTRL-C to exit
18:17:52 + omero admin diagnostics
18:17:54
18:17:54 ================================================================================
18:17:54 OMERO Diagnostics (admin)
18:17:54 ================================================================================
18:17:54
18:17:54 Commands: java -version 11.0.22 (/usr/bin/java)
18:17:54 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
18:17:54 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
18:17:54 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
18:17:54 Commands: psql --version 16.2 (/usr/bin/psql)
18:17:54 Commands: openssl version 3.0.71 (/usr/bin/openssl)
18:17:54
18:17:54 Component: OMERO.py 5.19.6.dev0
18:17:54 Component: OMERO.server 5.6.3-508-77df235826-ice36
18:17:54
18:17:54 Server: icegridnode running
18:17:54 Server: Blitz-0 active (pid = 2550, enabled)
18:17:54 Server: Indexer-0 activating (enabled)
18:17:54 Server: OMERO.Glacier2 active (pid = 2591, enabled)
18:17:54 Server: OMERO.IceStorm active (pid = 2601, enabled)
18:17:54 Server: Processor-0 activating (enabled)
18:17:54 Server: Tables-0 activating (enabled)
18:17:54
18:17:54 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
18:17:54 Log files: Blitz-0.log 20.7 KB errors=0 warnings=1
18:17:54 Log files: DropBox.log n/a
18:17:54 Log files: FileServer.log n/a
18:17:54 Log files: Indexer-0.log 483 B
18:17:54 Log files: MonitorServer.log n/a
18:17:54 Log files: Processor-0.log 281 B
18:17:54 Log files: Tables-0.log 281 B
18:17:54 Log files: TestDropBox.log n/a
18:17:54 Log files: master.err 180 B
18:17:54 Log files: master.out 30.1 KB
18:17:54 Log files: Total size 0.05 MB
18:17:54
18:17:54
18:17:54 Environment:OMERO_HOME=(unset)
18:17:54 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
18:17:54 Environment:OMERO_NODE=(unset)
18:17:54 Environment:OMERO_MASTER=(unset)
18:17:54 Environment:OMERO_USERDIR=(unset)
18:17:54 Environment:OMERO_TMPDIR=(unset)
18:17:54 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
18:17:54 Environment:PYTHONPATH=(unset)
18:17:54 Environment:ICE_HOME=/opt/ice-3.6.5
18:17:54 Environment:LD_LIBRARY_PATH=(unset)
18:17:54 Environment:DYLD_LIBRARY_PATH=(unset)
18:17:54
18:17:54 OMERO SSL port:4064
18:17:54 OMERO TCP port:4063
18:17:54 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
18:17:54 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
18:17:54
18:17:54 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
18:17:54 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
18:17:54 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
18:17:54 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
18:17:54
18:17:54 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 19 September 2024 7a02b5afb1658d27f534b6a5143d910701511e6d
18:17:54 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 19 September 2024 7a02b5afb1658d27f534b6a5143d910701511e6d
18:17:54 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 19 September 2024 7a02b5afb1658d27f534b6a5143d910701511e6d
18:17:54 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 19 September 2024 3443e316068286430739dcd0c03add672bb25cbe
18:17:54 Jar: lib/server/ome-common.jar OME Common Java 6.0.24-SNAPSHOT 19 September 2024 3443e316068286430739dcd0c03add672bb25cbe
18:17:54 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 19 September 2024 3443e316068286430739dcd0c03add672bb25cbe
18:17:54 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 19 September 2024 3443e316068286430739dcd0c03add672bb25cbe
18:17:54 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 19 September 2024 3443e316068286430739dcd0c03add672bb25cbe
18:17:54 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 19 September 2024 3443e316068286430739dcd0c03add672bb25cbe
18:17:54 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT
18:17:54 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT
18:17:54 Jar: lib/server/omero-gateway.jar jar 5.9.4-SNAPSHOT
18:17:54 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT
18:17:54 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT
18:17:54 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT
18:17:54 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT
18:17:55 + deactivate
18:17:55 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
18:17:55 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
18:17:55 + export PATH
18:17:55 + unset _OLD_VIRTUAL_PATH
18:17:55 + '[' -n '' ']'
18:17:55 + '[' -n /bin/bash -o -n '' ']'
18:17:55 + hash -r
18:17:55 + '[' -n '' ']'
18:17:55 + unset VIRTUAL_ENV
18:17:55 + '[' '!' '' = nondestructive ']'
18:17:55 + unset -f deactivate
18:17:55 Finished: SUCCESS
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