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generating indices... genindex done
writing additional pages... search done
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dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded.

The HTML pages are in target/sphinx/html.
[INFO] 
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[INFO] 
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[INFO] 
[INFO] -------------------------< ome:OMEZarrReader >--------------------------
[INFO] Building Implementation of Bio-Formats readers for the next-generation file formats 0.4.2-SNAPSHOT [24/25]
[INFO] --------------------------------[ jar ]---------------------------------
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Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/dataformat/jackson-dataformat-cbor/2.12.6/jackson-dataformat-cbor-2.12.6.jar (62 kB at 879 kB/s)
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[INFO] 
[INFO] --- buildnumber-maven-plugin:1.4:create (default) @ OMEZarrReader ---
[INFO] Executing: /bin/sh -c cd '/home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader' && 'git' 'rev-parse' '--verify' 'HEAD'
[INFO] Working directory: /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader
[INFO] Storing buildNumber: 2cf678612e01659a586bbd35ea650053f0df1d73 at timestamp: 1712189265280
[WARNING] Cannot get the branch information from the git repository: 
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref

[INFO] Executing: /bin/sh -c cd '/home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader' && 'git' 'rev-parse' '--verify' 'HEAD'
[INFO] Working directory: /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader
[INFO] Storing buildScmBranch: UNKNOWN
[INFO] 
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ OMEZarrReader ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/src/main/resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ OMEZarrReader ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 4 source files to /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/target/classes
[WARNING] /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/src/loci/formats/S3FileSystemStore.java: /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/src/loci/formats/S3FileSystemStore.java uses or overrides a deprecated API.
[WARNING] /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/src/loci/formats/S3FileSystemStore.java: Recompile with -Xlint:deprecation for details.
[WARNING] /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/src/loci/formats/S3FileSystemStore.java: Some input files use unchecked or unsafe operations.
[WARNING] /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/src/loci/formats/S3FileSystemStore.java: Recompile with -Xlint:unchecked for details.
[INFO] 
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ OMEZarrReader ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/src/test/resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @ OMEZarrReader ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 3 source files to /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/target/test-classes
[INFO] 
[INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ OMEZarrReader ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.0.0:jar (default-jar) @ OMEZarrReader ---
[INFO] Building jar: /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/target/OMEZarrReader-0.4.2-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-assembly-plugin:2.2-beta-5:single (make-assembly) @ OMEZarrReader ---
Downloading from central: https://repo.maven.apache.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
Downloading from ome: https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
Downloading from central: https://repo.maven.apache.org/maven2/edu/ucar/udunits/5.3.3/udunits-5.3.3.pom
Downloading from ome: https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/udunits/5.3.3/udunits-5.3.3.pom
Downloading from central: https://repo.maven.apache.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
Downloading from ome: https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
[INFO] META-INF/MANIFEST.MF already added, skipping
[INFO] META-INF/ already added, skipping
[INFO] loci/ already added, skipping
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[INFO] META-INF/ already added, skipping
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[INFO] com/ already added, skipping
[INFO] com/google/ already added, skipping
[INFO] com/google/api/ already added, skipping
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[INFO] com/google/api/client/http/ already added, skipping
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[INFO] META-INF/ already added, skipping
[INFO] META-INF/maven/ already added, skipping
[INFO] META-INF/MANIFEST.MF already added, skipping
[INFO] META-INF/ already added, skipping
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[WARNING] Assembly file: /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/target/OMEZarrReader-0.4.2-SNAPSHOT-jar-with-dependencies.jar is not a regular file (it may be a directory). It cannot be attached to the project build for installation or deployment.
[INFO] 
[INFO] --- maven-install-plugin:2.4:install (default-install) @ OMEZarrReader ---
[INFO] Installing /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/target/OMEZarrReader-0.4.2-SNAPSHOT.jar to /home/omero/.m2/repository/ome/OMEZarrReader/0.4.2-SNAPSHOT/OMEZarrReader-0.4.2-SNAPSHOT.jar
[INFO] Installing /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/ZarrReader/pom.xml to /home/omero/.m2/repository/ome/OMEZarrReader/0.4.2-SNAPSHOT/OMEZarrReader-0.4.2-SNAPSHOT.pom
[INFO] 
[INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ OMEZarrReader ---
[INFO] Using alternate deployment repository ome.staging::default::http://admin:admin123@nexus:8081/nexus/repository/maven-internal/
Downloading from ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/OMEZarrReader/0.4.2-SNAPSHOT/maven-metadata.xml
Progress (1): 769 B
                   
Downloaded from ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/OMEZarrReader/0.4.2-SNAPSHOT/maven-metadata.xml (769 B at 64 kB/s)
Uploading to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/OMEZarrReader/0.4.2-SNAPSHOT/OMEZarrReader-0.4.2-20240404.000751-23.jar
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Uploading to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/OMEZarrReader/0.4.2-SNAPSHOT/OMEZarrReader-0.4.2-20240404.000751-23.pom
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Downloading from ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/OMEZarrReader/maven-metadata.xml
Progress (1): 276 B
                   
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Progress (1): 769 B
                   
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Uploading to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/OMEZarrReader/maven-metadata.xml
Progress (1): 276 B
                   
Uploaded to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/OMEZarrReader/maven-metadata.xml (276 B at 7.1 kB/s)
[INFO] 
[INFO] -----------------------< ome:bio-formats-build >------------------------
[INFO] Building Bio-Formats top-level build 6.0.0-SNAPSHOT              [25/25]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-install-plugin:2.5.2:install (default-install) @ bio-formats-build ---
[INFO] Installing /home/omero/workspace/BIOFORMATS-build/label/testintegration/bio-formats-build/pom.xml to /home/omero/.m2/repository/ome/bio-formats-build/6.0.0-SNAPSHOT/bio-formats-build-6.0.0-SNAPSHOT.pom
[INFO] 
[INFO] --- maven-deploy-plugin:2.8.2:deploy (default-deploy) @ bio-formats-build ---
[INFO] Using alternate deployment repository ome.staging::default::http://admin:admin123@nexus:8081/nexus/repository/maven-internal/
Downloading from ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/bio-formats-build/6.0.0-SNAPSHOT/maven-metadata.xml
Progress (1): 599 B
                   
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Uploading to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/bio-formats-build/6.0.0-SNAPSHOT/bio-formats-build-6.0.0-20240404.000751-23.pom
Progress (1): 3.2 kB
                    
Uploaded to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/bio-formats-build/6.0.0-SNAPSHOT/bio-formats-build-6.0.0-20240404.000751-23.pom (3.2 kB at 40 kB/s)
Downloading from ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/bio-formats-build/maven-metadata.xml
Progress (1): 280 B
                   
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Uploading to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/bio-formats-build/6.0.0-SNAPSHOT/maven-metadata.xml
Progress (1): 599 B
                   
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Uploading to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/bio-formats-build/maven-metadata.xml
Progress (1): 280 B
                   
Uploaded to ome.staging: http://admin:admin123@nexus:8081/nexus/repository/maven-internal/ome/bio-formats-build/maven-metadata.xml (280 B at 13 kB/s)
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] OME Common Java 6.0.22-SNAPSHOT .................... SUCCESS [  9.610 s]
[INFO] OME Model 6.3.5-SNAPSHOT ........................... SUCCESS [  0.157 s]
[INFO] Metadata model specification 6.3.5-SNAPSHOT ........ SUCCESS [  4.576 s]
[INFO] OME XML library 6.3.5-SNAPSHOT ..................... SUCCESS [ 12.737 s]
[INFO] OME Model documentation 6.3.5-SNAPSHOT ............. SUCCESS [  4.465 s]
[INFO] OME POI 5.3.9-SNAPSHOT ............................. SUCCESS [  8.749 s]
[INFO] MDB Tools (Java port) 5.3.3-SNAPSHOT ............... SUCCESS [  3.597 s]
[INFO] OME JAI 0.1.3-SNAPSHOT ............................. SUCCESS [  7.408 s]
[INFO] OME Codecs 1.0.2-SNAPSHOT .......................... SUCCESS [  3.236 s]
[INFO] OME Stubs 6.0.2-SNAPSHOT ........................... SUCCESS [  0.105 s]
[INFO] MIPAV stubs 6.0.2-SNAPSHOT ......................... SUCCESS [  2.299 s]
[INFO] Metakit 5.3.7-SNAPSHOT ............................. SUCCESS [  2.411 s]
[INFO] Bio-Formats projects 8.0.0-SNAPSHOT ................ SUCCESS [  0.424 s]
[INFO] libjpeg-turbo Java bindings 8.0.0-SNAPSHOT ......... SUCCESS [  0.789 s]
[INFO] Bio-Formats API 8.0.0-SNAPSHOT ..................... SUCCESS [  0.865 s]
[INFO] BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT . SUCCESS [  2.602 s]
[INFO] Bio-Formats library 8.0.0-SNAPSHOT ................. SUCCESS [  2.796 s]
[INFO] Bio-Formats Plugins for ImageJ 8.0.0-SNAPSHOT ...... SUCCESS [  1.312 s]
[INFO] Bio-Formats command line tools 8.0.0-SNAPSHOT ...... SUCCESS [  0.533 s]
[INFO] bioformats_package bundle 8.0.0-SNAPSHOT ........... SUCCESS [ 12.510 s]
[INFO] Bio-Formats testing framework 8.0.0-SNAPSHOT ....... SUCCESS [  0.686 s]
[INFO] Bio-Formats examples 8.0.0-SNAPSHOT ................ SUCCESS [  0.712 s]
[INFO] Bio-Formats documentation 8.0.0-SNAPSHOT ........... SUCCESS [ 28.057 s]
[INFO] Implementation of Bio-Formats readers for the next-generation file formats 0.4.2-SNAPSHOT SUCCESS [  7.505 s]
[INFO] Bio-Formats top-level build 6.0.0-SNAPSHOT ......... SUCCESS [  0.140 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  01:58 min
[INFO] Finished at: 2024-04-04T00:07:51Z
[INFO] ------------------------------------------------------------------------
Archiving artifacts
Finished: SUCCESS