Skip to content

Changes

Summary

  1. Bump bio-formats-documentation from `dc91d85` to `1115576` (details)
  2. merge master -Dorg -Ssuccess-only (details)
  3. Update component versions (details)
Commit 8a0653c08abc7e6de0f4e1dea9b7d814e773b19e by noreply
Bump bio-formats-documentation from `dc91d85` to `1115576`

Bumps [bio-formats-documentation](https://github.com/ome/bio-formats-documentation) from `dc91d85` to `1115576`.
- [Commits](https://github.com/ome/bio-formats-documentation/compare/dc91d8524de5acafb3e507780e9da8ce7ce9094d...11155763980d8c68e160383c180809fa83d5437c)

---
updated-dependencies:
- dependency-name: bio-formats-documentation
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
The file was modified bio-formats-documentation (diff)
Commit 3aed2efea6d7870dbfd87d3d57a4598ef31cfc85 by snoopycrimecop
merge master -Dorg -Ssuccess-only

Repository: ome/bio-formats-build
Excluded PRs:
  - PR 620 dependabot[bot] 'Bump bioformats from `3b94f85` to `cc8bb5f`' (status: None)
Already up to date.

Merged PRs:
  - PR 621 dependabot[bot] 'Bump bio-formats-documentation from `dc91d85` to `1115576`'

Repository: ome/ZarrReader
Excluded PRs:
  - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment)
Already up to date.

Repository: ome/bio-formats-documentation
Already up to date.

Merged PRs:
  - PR 379 dgault 'Update broken link for Maia Scientific and adding Openslide and Tronche to the ignore list'
  - PR 380 dgault 'Add version history for 7.3.1'
  - PR 382 jburel 'use https instead of http'

Repository: ome/bio-formats-examples
Already up to date.

Merged PRs:
  - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop'
  - PR 127 jburel 'Matlab Examples'
  - PR 128 sbesson 'Relicense Bio-Formats examples under BSD 2-clause'

Repository: openmicroscopy/bioformats
Excluded PRs:
  - PR 4205 NicoKiaru 'OIRReader: Major performance improvement when reading a ROI within a plane' (user: NicoKiaru)
  - PR 4200 tstoeter 'Allow processing multiple files sequentially in a single run, with file names read from stdin.' (user: tstoeter)
  - PR 4195 WalkerKnapp 'Andor SIF: Support files larger than 4 GB and with non-fixed-size footers' (user: WalkerKnapp)
  - PR 4190 melissalinkert 'Extend precompressed support to read DICOM and write TIFF/OME-TIFF' (stage: draft)
  - PR 4172 sbesson 'testSaneUsedFiles: check getCurrentFile is the first file in the getUsedFiles list' (stage: draft)
  - PR 4164 melissalinkert 'Reduce DICOM write time' (stage: draft)
  - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure)
  - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru)
  - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats)
  - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude)
  - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking)
  - PR 3537 dgault 'Flex: Merge IDR changes and add new group plate option' (label: exclude)
Updating 3b94f8568b..cc8bb5fa61
Previously merged:
  - PR 4193 dgault 'Imaris: Remove empty color entries for non 0 indexed colors'
  - PR 4202 melissalinkert 'SVS: update isThisType to reject files with a single IFD'

Merged PRs:
  - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)'
  - PR 4181 melissalinkert 'Add support for reading compressed NDPI tiles'
  - PR 4196 melissalinkert 'DICOM: use FrameTimePointer to detect timelapse data'
  - PR 4198 cqian89 'SDT: fix NegativeArraySizeException when reading files recorded by SPCM64 9.90'
  - PR 4203 melissalinkert 'CV7000/8000: fix used files list when TIFFs are in a subdirectory'

Repository: ome/ome-codecs
Already up to date.

Merged PRs:
  - PR 37 melissalinkert 'JPEG: warn if quality is outside [0.25, 1.0]'

Repository: ome/ome-common-java
Excluded PRs:
  - PR 59 NicoKiaru 'adds AverageImageScaler implementation of IImageScaler' (user: NicoKiaru)
Already up to date.

Repository: ome/ome-jai
Already up to date.

Repository: ome/ome-mdbtools
Already up to date.

Repository: ome/ome-metakit
Already up to date.

Repository: ome/ome-model
Already up to date.

Conflicting PRs (not included):
  - PR 174 jburel 'Remove docs'

Repository: ome/ome-poi
Already up to date.

Repository: ome/ome-stubs
Already up to date.

Generated by BIOFORMATS-push#128 (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/128/)
The file was modified .gitmodules (diff)
The file was modified bio-formats-examples (diff)
The file was modified ome-stubs (diff)
The file was modified ome-jai (diff)
The file was modified bioformats (diff)
The file was modified ome-common-java (diff)
The file was modified ZarrReader (diff)
The file was modified ome-model (diff)
The file was modified ome-mdbtools (diff)
The file was modified ome-codecs (diff)
The file was modified ome-poi (diff)
The file was modified bio-formats-documentation (diff)
The file was modified ome-metakit (diff)
Commit 4b8e1354088070e865e463d5fad889d28a6d5fc7 by snoopycrimecop
Update component versions
The file was modified ome-model (diff)
The file was modified ome-metakit (diff)
The file was modified bio-formats-examples (diff)
The file was modified bioformats (diff)
The file was modified bio-formats-documentation (diff)
The file was modified ome-codecs (diff)
The file was modified ome-poi (diff)