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Summary

  1. Bump bioformats from `54cf1e8` to `e4ffbe8` (details)
  2. merge master -Dorg -Ssuccess-only (details)
  3. Update component versions (details)
Commit bfaebacd6b4c4aabea9a6fe2ed106ff832a19491 by noreply
Bump bioformats from `54cf1e8` to `e4ffbe8`

Bumps [bioformats](https://github.com/openmicroscopy/bioformats) from `54cf1e8` to `e4ffbe8`.
- [Release notes](https://github.com/openmicroscopy/bioformats/releases)
- [Commits](https://github.com/openmicroscopy/bioformats/compare/54cf1e8106592e9f3f44817d053e65db799dbaf9...e4ffbe89ba6cb9fd44f92fb4dfa4cc64f3918ba5)

---
updated-dependencies:
- dependency-name: bioformats
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
The file was modified bioformats (diff)
Commit 89d3e3022ba71b2b15da896949b3c57dd3623a0e by snoopycrimecop
merge master -Dorg -Ssuccess-only

Repository: ome/bio-formats-build
Excluded PRs:
  - PR 632 dependabot[bot] 'Bump ZarrReader from `9a9e662` to `b17c3ab`' (status: failure)
Already up to date.

Merged PRs:
  - PR 637 dependabot[bot] 'Bump bioformats from `54cf1e8` to `e4ffbe8`'

Repository: ome/ZarrReader
Excluded PRs:
  - PR 95 dgault 'Class cast exception when parsing metadata' (status: failure)
  - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment)
Updating 9a9e662..b17c3ab
Previously merged:
  - PR 93 dgault 'Bump version to 0.5.3-SNAPSHOT'
  - PR 92 dgault 'Bump version to 0.5.2'
  - PR 91 dgault 'Bump Bio-Formats version to 7.3.1'

Repository: ome/bio-formats-documentation
Excluded PRs:
  - PR 390 melissalinkert 'Update precompressed tile documentation' (label: exclude)
Already up to date.

Merged PRs:
  - PR 391 sbesson 'Migrate the command-line tools index to the users page'

Repository: ome/bio-formats-examples
Already up to date.

Merged PRs:
  - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop'
  - PR 127 jburel 'Matlab Examples'
  - PR 128 sbesson 'Relicense Bio-Formats examples under BSD 2-clause'

Repository: openmicroscopy/bioformats
Excluded PRs:
  - PR 4217 marcobitplane 'Imaris IMS Reader: support for LZ4 compression and performance improvements' (user: marcobitplane)
  - PR 4196 melissalinkert 'DICOM: use FrameTimePointer to detect timelapse data' (label: exclude)
  - PR 4172 sbesson 'testSaneUsedFiles: check getCurrentFile is the first file in the getUsedFiles list' (stage: draft)
  - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure)
  - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru)
  - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats)
  - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude)
  - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking)
Already up to date.

Merged PRs:
  - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)'
  - PR 4164 melissalinkert 'Reduce DICOM write time'
  - PR 4195 WalkerKnapp 'Andor SIF: Support files larger than 4 GB and with non-fixed-size footers'
  - PR 4205 NicoKiaru 'OIRReader: Major performance improvement when reading a ROI within a plane'
  - PR 4215 melissalinkert 'Fix DICOM export in ImageJ'
  - PR 4219 melissalinkert 'ImageJ exporter: save original metadata'

Repository: ome/ome-codecs
Excluded PRs:
  - PR 40 atbest 'Implement Zstandard compression' (user: atbest)
Already up to date.

Merged PRs:
  - PR 37 melissalinkert 'JPEG: warn if quality is outside [0.25, 1.0]'

Repository: ome/ome-common-java
Excluded PRs:
  - PR 59 NicoKiaru 'adds AverageImageScaler implementation of IImageScaler' (user: NicoKiaru)
Already up to date.

Repository: ome/ome-jai
Already up to date.

Repository: ome/ome-mdbtools
Already up to date.

Repository: ome/ome-metakit
Already up to date.

Repository: ome/ome-model
Already up to date.

Conflicting PRs (not included):
  - PR 174 jburel 'Remove docs'

Repository: ome/ome-poi
Already up to date.

Repository: ome/ome-stubs
Already up to date.

Generated by BIOFORMATS-push#185 (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/185/)
The file was modified ome-stubs (diff)
The file was modified bio-formats-documentation (diff)
The file was modified .gitmodules (diff)
The file was modified ome-metakit (diff)
The file was modified bio-formats-examples (diff)
The file was modified ome-jai (diff)
The file was modified ome-poi (diff)
The file was modified ome-model (diff)
The file was modified ome-codecs (diff)
The file was modified ome-common-java (diff)
The file was modified ome-mdbtools (diff)
The file was modified ZarrReader (diff)
The file was modified bioformats (diff)
Commit 56649be5b75b1d1a8312164039791aad8f86ff75 by snoopycrimecop
Update component versions
The file was modified bioformats (diff)
The file was modified ome-codecs (diff)
The file was modified ome-metakit (diff)
The file was modified bio-formats-examples (diff)
The file was modified ome-model (diff)
The file was modified bio-formats-documentation (diff)
The file was modified ome-poi (diff)