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#15 445.8 Progress (3): 2.3/3.0 MB | 1.6/1.6 MB | 862 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/core5/httpcore5-h2/5.2.4/httpcore5-h2-5.2.4.jar
#15 445.8 Progress (3): 2.3/3.0 MB | 1.6/1.6 MB | 862 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.16.1/jackson-databind-2.16.1.jar (1.6 MB at 7.0 MB/s)
#15 445.8 Progress (4): 3.0/3.0 MB | 862 kB | 491/855 kB | 106/237 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/client5/httpclient5/5.3.1/httpclient5-5.3.1.jar (862 kB at 3.4 MB/s)
#15 445.9 Progress (3): 3.0 MB | 811/855 kB | 237 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/32.1.0-jre/guava-32.1.0-jre.jar (3.0 MB at 11 MB/s)
#15 445.9 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/core5/httpcore5-h2/5.2.4/httpcore5-h2-5.2.4.jar (237 kB at 856 kB/s)
#15 445.9 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/core5/httpcore5/5.2.4/httpcore5-5.2.4.jar (855 kB at 2.7 MB/s)
#15 446.6 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bundles/bioformats_package/target/bioformats_package-8.4.0-SNAPSHOT.jar
#15 454.3 [[1;34mINFO[m]
#15 454.3 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbioformats_package[0;1m ---[m
#15 454.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.pom
#15 454.3 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/target/bioformats_package-8.4.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.jar
#15 454.4 [[1;34mINFO[m]
#15 454.4 [[1;34mINFO[m] [1m---------------------------< [0;36mome:test-suite[0;1m >---------------------------[m
#15 454.4 [[1;34mINFO[m] [1mBuilding Bio-Formats testing framework 8.4.0-SNAPSHOT [20/24][m
#15 454.4 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#15 454.4 Downloading from central: https://repo.maven.apache.org/maven2/nl/javadude/assumeng/assumeng/1.2.4/assumeng-1.2.4.pom
#15 454.4 Progress (1): 2.0 kB
Downloaded from central: https://repo.maven.apache.org/maven2/nl/javadude/assumeng/assumeng/1.2.4/assumeng-1.2.4.pom (2.0 kB at 28 kB/s)
#15 454.4 Downloading from central: https://repo.maven.apache.org/maven2/org/testng/testng/6.5.2/testng-6.5.2.pom
#15 454.5 Progress (1): 4.1 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/testng/testng/6.5.2/testng-6.5.2.pom (7.2 kB at 107 kB/s)
#15 454.5 Downloading from central: https://repo.maven.apache.org/maven2/com/beust/jcommander/1.12/jcommander-1.12.pom
#15 454.6 Progress (1): 4.1 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/beust/jcommander/1.12/jcommander-1.12.pom (7.9 kB at 110 kB/s)
#15 454.6 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-api/1.6.4/slf4j-api-1.6.4.pom
#15 454.6 Progress (1): 2.7 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-api/1.6.4/slf4j-api-1.6.4.pom (2.7 kB at 40 kB/s)
#15 454.7 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-parent/1.6.4/slf4j-parent-1.6.4.pom
#15 454.7 Progress (1): 4.1 kB
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#15 457.8 [[1;34mINFO[m] T E S T S
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#15 459.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/2.0/maven-plugin-api-2.0.pom
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#15 459.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/2.0/maven-2.0.pom
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#15 459.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-toolchain/1.0/maven-toolchain-1.0.jar
#15 459.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-project/2.0.6/maven-project-2.0.6.jar
#15 459.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.6/maven-settings-2.0.6.jar
#15 459.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-profile/2.0.6/maven-profile-2.0.6.jar
#15 459.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-registry/2.0.6/maven-plugin-registry-2.0.6.jar
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#15 459.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.6/maven-model-2.0.6.jar
#15 459.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-project/2.0.6/maven-project-2.0.6.jar (116 kB at 1.5 MB/s)
#15 459.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.6/maven-artifact-2.0.6.jar
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#15 459.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact-manager/2.0.6/maven-artifact-manager-2.0.6.jar
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#15 459.6 Progress (3): 29 kB | 77/86 kB | 61/87 kB
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#15 459.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/2.0.6/maven-core-2.0.6.jar
#15 459.6 Progress (4): 86 kB | 87 kB | 57 kB | 4.0/24 kB
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#15 459.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.6/maven-model-2.0.6.jar (86 kB at 576 kB/s)
#15 459.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-parameter-documenter/2.0.6/maven-plugin-parameter-documenter-2.0.6.jar
#15 459.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.6/maven-reporting-api-2.0.6.jar
#15 459.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact-manager/2.0.6/maven-artifact-manager-2.0.6.jar (57 kB at 353 kB/s)
#15 459.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-error-diagnostics/2.0.6/maven-error-diagnostics-2.0.6.jar
#15 459.7 Progress (2): 24 kB | 2.3/152 kB
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#15 459.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-descriptor/2.0.6/maven-plugin-descriptor-2.0.6.jar
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#15 459.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-monitor/2.0.6/maven-monitor-2.0.6.jar
#15 459.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.6/maven-reporting-api-2.0.6.jar (9.9 kB at 44 kB/s)
#15 459.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/2.0.6/maven-plugin-api-2.0.6.jar
#15 459.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/2.0.6/maven-core-2.0.6.jar (152 kB at 632 kB/s)
#15 459.7 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/2.0.5/plexus-utils-2.0.5.jar
#15 459.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-error-diagnostics/2.0.6/maven-error-diagnostics-2.0.6.jar (14 kB at 54 kB/s)
#15 459.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-exec/1.1/commons-exec-1.1.jar
#15 459.7 Progress (2): 37 kB | 4.1/10 kB
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#15 459.8 Progress (3): 10 kB | 13 kB | 3.8/223 kB
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#15 459.8 Progress (2): 13 kB | 147/223 kB
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#15 459.8 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/2.0.5/plexus-utils-2.0.5.jar (223 kB at 666 kB/s)
#15 459.8 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-exec/1.1/commons-exec-1.1.jar (53 kB at 154 kB/s)
#15 460.4 Executing ReadPhysicalSize
#15 460.8 Physical calibration - Image: 0
#15 460.8 X = 1.0 nm = 0.001 µm
#15 460.8 Y = 0.1 µm = 0.1 µm
#15 460.8 Success
#15 460.8 Executing FileConvert
#15 460.9 Success
#15 460.9 Executing FileExport
#15 461.0 Success
#15 461.0 Executing FileExportSPW
#15 461.5 Success
#15 461.5 Executing SimpleTiledWriter
#15 461.6 Success
#15 461.6 Executing TiledReaderWriter
#15 461.6 Success
#15 461.6 Executing TiledReaderWriter
#15 461.7 Success
#15 461.7 Executing OverlappedTiledWriter
#15 461.9 Success
#15 461.9 Executing OverlappedTiledWriter
#15 462.0 Success
#15 462.0 Executing ReadWriteInMemory
#15 462.0 Reading file into memory from disk...
#15 462.0 0 bytes read.
#15 462.0
#15 462.0 Reading image data from memory...
#15 462.0 Series count: 1
#15 462.0 First series:
#15 462.0 Image count = 1
#15 462.0 SizeX = 512
#15 462.0 SizeY = 512
#15 462.0 SizeZ = 1
#15 462.0 SizeC = 1
#15 462.0 SizeT = 1
#15 462.0
#15 462.0 Writing planes to destination in memory: .
#15 462.0
#15 462.0 Flushing image data to disk...
#15 462.0 Success
#15 462.0 Executing OrthogonalReader
#15 462.0 2025-12-31 00:18:17,919 [ExampleSuite.main()] INFO loci.formats.ImageReader - FakeReader initializing /bio-formats-build/bio-formats-examples/target/classes/test.fake
#15 486.5 Success
#15 486.5 Executing SubResolutionExample
#15 486.5 Initializing file: /bio-formats-build/bio-formats-examples/target/classes/test&resolutions=4.fake
#15 486.5 2025-12-31 00:18:42,420 [ExampleSuite.main()] INFO loci.formats.ImageReader - FakeReader initializing /bio-formats-build/bio-formats-examples/target/classes/test&resolutions=4.fake
#15 486.5 Series count = 1
#15 486.5 Resolution count for series #0 = 4
#15 486.5 Resolution #0 dimensions = 512 x 512
#15 486.5 Resolution #1 dimensions = 256 x 256
#15 486.5 Resolution #2 dimensions = 128 x 128
#15 486.5 Resolution #3 dimensions = 64 x 64
#15 486.5 Success
#15 486.5 Executing GeneratePyramidResolutions
#15 486.5 2025-12-31 00:18:42,422 [ExampleSuite.main()] INFO loci.formats.ImageReader - FakeReader initializing /bio-formats-build/bio-formats-examples/target/classes/test&sizeX=1024&sizeY=1024.fake
#15 486.5 Writing image to '/bio-formats-build/bio-formats-examples/target/classes/generatedPyramid.ome.tiff'...
#15 486.7 Done.
#15 486.7 Success
#15 486.7 [[1;34mINFO[m]
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#15 486.7 [[1;34mINFO[m] Building jar: /bio-formats-build/bio-formats-examples/target/bio-formats-examples-8.4.0-SNAPSHOT.jar
#15 486.7 [[1;34mINFO[m]
#15 486.7 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar-no-fork[m [1m(attach-sources)[m @ [36mbio-formats-examples[0;1m ---[m
#15 486.7 [[1;34mINFO[m] Building jar: /bio-formats-build/bio-formats-examples/target/bio-formats-examples-8.4.0-SNAPSHOT-sources.jar
#15 486.7 [[1;34mINFO[m]
#15 486.7 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats-examples[0;1m ---[m
#15 486.7 [[1;34mINFO[m] Installing /bio-formats-build/bio-formats-examples/target/bio-formats-examples-8.4.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats-examples/8.4.0-SNAPSHOT/bio-formats-examples-8.4.0-SNAPSHOT.jar
#15 486.7 [[1;34mINFO[m] Installing /bio-formats-build/bio-formats-examples/pom.xml to /home/build/.m2/repository/ome/bio-formats-examples/8.4.0-SNAPSHOT/bio-formats-examples-8.4.0-SNAPSHOT.pom
#15 486.7 [[1;34mINFO[m] Installing /bio-formats-build/bio-formats-examples/target/bio-formats-examples-8.4.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats-examples/8.4.0-SNAPSHOT/bio-formats-examples-8.4.0-SNAPSHOT-sources.jar
#15 486.7 [[1;34mINFO[m]
#15 486.7 [[1;34mINFO[m] [1m-------------------< [0;36mome:bio-formats-documentation[0;1m >--------------------[m
#15 486.7 [[1;34mINFO[m] [1mBuilding Bio-Formats documentation 8.4.0-SNAPSHOT [22/24][m
#15 486.7 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#15 486.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-dependency-plugin/3.1.1/maven-dependency-plugin-3.1.1.pom
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#15 486.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-compiler-plugin/3.7.0/maven-compiler-plugin-3.7.0.pom
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#15 487.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-compiler-plugin/3.7.0/maven-compiler-plugin-3.7.0.jar
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#15 487.3 [[1;34mINFO[m]
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#15 487.3 [[1;34mINFO[m]
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#15 487.3 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#15 487.3 [[1;34mINFO[m] Copying 1 resource
#15 487.4 [[1;34mINFO[m] Copying 117 resources
#15 487.4 [[1;34mINFO[m]
#15 487.4 [[1;34mINFO[m] [1m--- [0;32mbuild-helper-maven-plugin:3.0.0:parse-version[m
#15 487.4 [output clipped, log limit 2MiB reached]
#15 492.9 WARNING: A restricted method in java.lang.System has been called
#15 492.9 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#15 492.9 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#15 492.9 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#15 492.9
#15 541.4 SLF4J: No SLF4J providers were found.
#15 541.4 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 541.4 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 541.9 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 541.9 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 541.9 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 541.9 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 549.7s
#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.0s
#17 [13/14] RUN ant jars tools
#17 0.349 Buildfile: /bio-formats-build/bioformats/build.xml
#17 0.858 [echo] isSnapshot = true
#17 0.967
#17 0.967 copy-jars:
#17 0.967
#17 0.967 deps-formats-api:
#17 1.053 [echo] isSnapshot = true
#17 1.108
#17 1.108 install-pom:
#17 1.296 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#17 1.361 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 1.365 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 1.367
#17 1.367 jar-formats-api:
#17 1.479 [echo] isSnapshot = true
#17 1.645
#17 1.645 init-title:
#17 1.645 [echo] ----------=========== formats-api ===========----------
#17 1.645
#17 1.645 init-timestamp:
#17 1.653
#17 1.653 init:
#17 1.653
#17 1.653 copy-resources:
#17 1.655 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.670 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.672
#17 1.672 compile:
#17 1.857 [resolver:resolve] Resolving artifacts
#17 1.884 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 2.154 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 2.154 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 2.154 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 2.154 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 2.155 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 2.155 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 2.855 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 2.855 [javac] import loci.common.ReflectedUniverse;
#17 2.855 [javac] ^
#17 3.156 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.156 [javac] int currentIndex = r.getCoreIndex();
#17 3.156 [javac] ^
#17 3.156 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.156 [javac] r.setCoreIndex(coreIndex);
#17 3.156 [javac] ^
#17 3.156 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.156 [javac] r.setCoreIndex(currentIndex);
#17 3.156 [javac] ^
#17 3.257 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.257 [javac] public void setCoreIndex(int no) {
#17 3.257 [javac] ^
#17 3.257 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.257 [javac] public int getCoreIndex() {
#17 3.257 [javac] ^
#17 3.257 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.257 [javac] public int coreIndexToSeries(int index)
#17 3.257 [javac] ^
#17 3.257 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.257 [javac] public int seriesToCoreIndex(int series)
#17 3.257 [javac] ^
#17 3.257 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.257 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.258 [javac] ^
#17 3.358 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.358 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 3.358 [javac] ^
#17 3.358 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.358 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 3.358 [javac] ^
#17 3.358 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.358 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 3.358 [javac] ^
#17 3.358 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.358 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 3.358 [javac] ^
#17 3.459 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 3.459 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 3.459 [javac] ^
#17 3.459 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.459 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.459 [javac] ^
#17 3.459 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.459 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.459 [javac] ^
#17 3.560 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.560 [javac] public void setCoreIndex(int no) {
#17 3.560 [javac] ^
#17 3.560 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.560 [javac] public int getCoreIndex() {
#17 3.560 [javac] ^
#17 3.560 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.560 [javac] public int coreIndexToSeries(int index) {
#17 3.560 [javac] ^
#17 3.560 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.560 [javac] public int seriesToCoreIndex(int series) {
#17 3.560 [javac] ^
#17 3.560 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.561 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.561 [javac] ^
#17 3.561 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.561 [javac] return getReader().getCoreMetadataList();
#17 3.561 [javac] ^
#17 3.561 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.561 [javac] return getReader().getCoreIndex();
#17 3.561 [javac] ^
#17 3.561 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.561 [javac] getReader().setCoreIndex(no);
#17 3.561 [javac] ^
#17 3.561 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.561 [javac] return getReader().seriesToCoreIndex(series);
#17 3.561 [javac] ^
#17 3.561 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.561 [javac] return getReader().coreIndexToSeries(index);
#17 3.561 [javac] ^
#17 3.661 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.661 [javac] public void setCoreIndex(int no) {
#17 3.661 [javac] ^
#17 3.662 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.662 [javac] public int getCoreIndex() {
#17 3.662 [javac] ^
#17 3.662 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.662 [javac] public int coreIndexToSeries(int index) {
#17 3.662 [javac] ^
#17 3.662 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.662 [javac] public int seriesToCoreIndex(int series) {
#17 3.662 [javac] ^
#17 3.662 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.662 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.662 [javac] ^
#17 3.662 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.662 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 3.662 [javac] ^
#17 3.662 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.662 [javac] return reader.getCoreIndex();
#17 3.662 [javac] ^
#17 3.662 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.662 [javac] reader.setCoreIndex(no);
#17 3.662 [javac] ^
#17 3.662 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.662 [javac] return reader.seriesToCoreIndex(series);
#17 3.662 [javac] ^
#17 3.662 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.662 [javac] return reader.coreIndexToSeries(index);
#17 3.662 [javac] ^
#17 3.816 [javac] Note: Some input files use unchecked or unsafe operations.
#17 3.816 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 3.816 [javac] 40 warnings
#17 3.817
#17 3.817 formats-api.jar:
#17 3.817 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 3.845 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 3.883 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#17 3.886 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#17 3.888 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#17 3.889 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 3.891 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 3.892
#17 3.892 deps-turbojpeg:
#17 3.892
#17 3.892 jar-turbojpeg:
#17 3.998 [echo] isSnapshot = true
#17 4.139
#17 4.139 init-title:
#17 4.139 [echo] ----------=========== turbojpeg ===========----------
#17 4.139
#17 4.139 init-timestamp:
#17 4.140
#17 4.140 init:
#17 4.140
#17 4.140 copy-resources:
#17 4.140 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.141
#17 4.141 compile:
#17 4.151 [resolver:resolve] Resolving artifacts
#17 4.154 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.356 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 4.356 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 4.356 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 4.356 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 4.356 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 4.356 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 5.146 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.146 [javac] protected void finalize() throws Throwable {
#17 5.146 [javac] ^
#17 5.146 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.146 [javac] super.finalize();
#17 5.146 [javac] ^
#17 5.146 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.146 [javac] protected void finalize() throws Throwable {
#17 5.146 [javac] ^
#17 5.146 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.146 [javac] super.finalize();
#17 5.146 [javac] ^
#17 5.146 [javac] 8 warnings
#17 5.147
#17 5.147 jar:
#17 5.150 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 5.339 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#17 5.347 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#17 5.349 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#17 5.350 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 5.354 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 5.355
#17 5.355 deps-formats-bsd:
#17 5.355
#17 5.355 jar-formats-bsd:
#17 5.475 [echo] isSnapshot = true
#17 5.618
#17 5.618 init-title:
#17 5.618 [echo] ----------=========== formats-bsd ===========----------
#17 5.618
#17 5.618 init-timestamp:
#17 5.619
#17 5.619 init:
#17 5.619
#17 5.619 copy-resources:
#17 5.619 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.622 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.623
#17 5.623 compile:
#17 5.850 [resolver:resolve] Resolving artifacts
#17 5.876 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 6.093 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 6.093 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 6.093 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 6.093 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 6.093 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 6.093 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 7.294 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 7.294 [javac] import loci.common.ReflectedUniverse;
#17 7.294 [javac] ^
#17 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.795 [javac] core.size() != reader.getCoreMetadataList().size())
#17 7.795 [javac] ^
#17 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.795 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 7.795 [javac] ^
#17 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.795 [javac] int n = reader.getCoreMetadataList().size();
#17 7.795 [javac] ^
#17 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 7.795 [javac] reader.setCoreIndex(coreIndex);
#17 7.795 [javac] ^
#17 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.795 [javac] int n = reader.getCoreMetadataList().size();
#17 7.795 [javac] ^
#17 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.795 [javac] int n = reader.getCoreMetadataList().size();
#17 7.795 [javac] ^
#17 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 7.795 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 7.795 [javac] ^
#17 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.795 [javac] int n = reader.getCoreMetadataList().size();
#17 7.795 [javac] ^
#17 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 7.795 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 7.795 [javac] ^
#17 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.795 [javac] int n = reader.getCoreMetadataList().size();
#17 7.795 [javac] ^
#17 7.795 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 7.795 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 7.796 [javac] ^
#17 7.796 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 7.796 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 7.796 [javac] ^
#17 7.796 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 7.796 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 7.796 [javac] ^
#17 7.796 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.796 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#17 7.796 [javac] ^
#17 7.796 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.796 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 7.796 [javac] ^
#17 7.796 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.796 [javac] seriesCount = reader.getCoreMetadataList().size();
#17 7.796 [javac] ^
#17 7.796 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.796 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 7.796 [javac] ^
#17 7.796 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.796 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#17 7.796 [javac] ^
#17 7.796 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.796 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 7.796 [javac] ^
#17 7.897 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.897 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#17 7.897 [javac] ^
#17 7.997 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 7.997 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#17 7.997 [javac] ^
#17 7.997 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 7.997 [javac] URL url = new URL(urlPath);
#17 7.997 [javac] ^
#17 8.098 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 8.098 [javac] BitWriter out = new BitWriter();
#17 8.098 [javac] ^
#17 8.098 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 8.098 [javac] BitWriter out = new BitWriter();
#17 8.098 [javac] ^
#17 8.198 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.198 [javac] return new Double(v);
#17 8.198 [javac] ^
#17 8.698 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2129: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.698 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 8.698 [javac] ^
#17 8.698 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2136: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.698 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 8.698 [javac] ^
#17 8.699 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2143: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 8.699 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 8.699 [javac] ^
#17 8.799 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 8.799 [javac] channelNames.put(new Integer(channelNames.size()), value);
#17 8.799 [javac] ^
#17 8.999 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.999 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 8.999 [javac] ^
#17 9.099 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 9.099 [javac] StreamTokenizer st = new StreamTokenizer(in);
#17 9.099 [javac] ^
#17 9.099 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.099 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 9.099 [javac] ^
#17 9.200 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.200 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 9.200 [javac] ^
#17 9.200 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 9.200 [javac] protected ReflectedUniverse r;
#17 9.200 [javac] ^
#17 9.200 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 9.200 [javac] r = new ReflectedUniverse();
#17 9.200 [javac] ^
#17 9.200 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#17 9.200 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 9.200 [javac] ^
#17 9.200 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#17 9.200 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 9.200 [javac] ^
#17 9.200 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#17 9.200 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 9.200 [javac] ^
#17 9.200 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 9.200 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 9.200 [javac] ^
#17 9.200 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1111: warning: [deprecation] MM in UNITS has been deprecated
#17 9.200 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 9.200 [javac] ^
#17 9.200 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1115: warning: [deprecation] MM in UNITS has been deprecated
#17 9.200 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 9.200 [javac] ^
#17 9.200 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1121: warning: [deprecation] MM in UNITS has been deprecated
#17 9.200 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 9.200 [javac] ^
#17 9.200 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1169: warning: [deprecation] MM in UNITS has been deprecated
#17 9.200 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 9.200 [javac] ^
#17 9.200 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1174: warning: [deprecation] MM in UNITS has been deprecated
#17 9.200 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 9.200 [javac] ^
#17 9.301 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.301 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 9.301 [javac] ^
#17 9.301 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 9.301 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 9.301 [javac] ^
#17 9.301 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.301 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 9.301 [javac] ^
#17 9.301 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 9.301 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 9.301 [javac] ^
#17 9.401 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 9.401 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 9.401 [javac] ^
#17 9.401 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.401 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#17 9.401 [javac] ^
#17 9.401 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.401 [javac] result[i] = new Double(readNumber().doubleValue());
#17 9.401 [javac] ^
#17 9.401 [javac] Note: Some input files use unchecked or unsafe operations.
#17 9.401 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 9.401 [javac] 56 warnings
#17 9.409
#17 9.409 formats-bsd.jar:
#17 9.421 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 9.536 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#17 9.539 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#17 9.590 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#17 9.591 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 9.593 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 9.594
#17 9.594 deps-formats-gpl:
#17 9.594
#17 9.594 jar-formats-gpl:
#17 9.687 [echo] isSnapshot = true
#17 9.830
#17 9.830 init-title:
#17 9.830 [echo] ----------=========== formats-gpl ===========----------
#17 9.830
#17 9.830 init-timestamp:
#17 9.830
#17 9.830 init:
#17 9.830
#17 9.830 copy-resources:
#17 9.831 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 9.832 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 9.833
#17 9.833 compile:
#17 10.19 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 10.95 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 11.33 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#17 11.38 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 11.55 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 11.67 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#17 11.69 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 11.88 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 12.00 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#17 12.05 [resolver:resolve] Resolving artifacts
#17 12.06 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 12.06 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 12.29 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 12.29 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 12.65 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#17 12.65 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#17 12.66 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 12.87 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 12.87 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 12.87 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 12.87 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 12.87 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 12.97 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 14.17 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 14.17 [javac] import loci.formats.codec.BitWriter;
#17 14.17 [javac] ^
#17 14.27 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 14.27 [javac] import loci.formats.codec.BitWriter;
#17 14.27 [javac] ^
#17 16.38 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 16.38 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#17 16.38 [javac] ^
#17 16.38 [javac] cast to Object for a varargs call
#17 16.38 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#17 16.38 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.38 [javac] BitWriter bits = null;
#17 16.38 [javac] ^
#17 16.38 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.38 [javac] bits = new BitWriter(planes[index].length / 8);
#17 16.38 [javac] ^
#17 16.78 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 16.78 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 16.78 [javac] ^
#17 17.18 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 17.18 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 17.18 [javac] ^
#17 17.18 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 17.18 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 17.18 [javac] ^
#17 17.18 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 17.18 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 17.18 [javac] ^
#17 17.18 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 17.18 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 17.18 [javac] ^
#17 17.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 17.48 [javac] Variable variable = group.findVariable(variableName);
#17 17.48 [javac] ^
#17 17.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 17.48 [javac] Variable variable = group.findVariable(variableName);
#17 17.48 [javac] ^
#17 17.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 17.48 [javac] List<Attribute> attributes = variable.getAttributes();
#17 17.48 [javac] ^
#17 17.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#17 17.48 [javac] String groupName = group.getName();
#17 17.48 [javac] ^
#17 17.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#17 17.48 [javac] List<Attribute> attributes = group.getAttributes();
#17 17.48 [javac] ^
#17 17.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#17 17.48 [javac] String variableName = variable.getName();
#17 17.48 [javac] ^
#17 17.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 17.48 [javac] Group nextParent = parent.findGroup(token);
#17 17.48 [javac] ^
#17 17.48 [javac] Note: Some input files use unchecked or unsafe operations.
#17 17.48 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 17.48 [javac] 21 warnings
#17 17.48
#17 17.48 formats-gpl.jar:
#17 17.49 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 17.64 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#17 17.64 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#17 17.64 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#17 17.64 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 17.65 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 17.65
#17 17.65 deps-bio-formats-plugins:
#17 17.65
#17 17.65 jar-bio-formats-plugins:
#17 17.74 [echo] isSnapshot = true
#17 17.89
#17 17.89 init-title:
#17 17.89 [echo] ----------=========== bio-formats_plugins ===========----------
#17 17.89
#17 17.89 init-timestamp:
#17 17.89
#17 17.89 init:
#17 17.89
#17 17.89 copy-resources:
#17 17.89 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.89 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.89
#17 17.89 compile:
#17 18.15 [resolver:resolve] Resolving artifacts
#17 18.17 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 18.47 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 18.47 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 18.47 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 18.47 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 18.47 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 18.47 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 19.27 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.27 [javac] import loci.common.ReflectedUniverse;
#17 19.27 [javac] ^
#17 19.27 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.27 [javac] import loci.common.ReflectedUniverse;
#17 19.27 [javac] ^
#17 19.78 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 19.78 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 19.78 [javac] ^
#17 19.88 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 19.88 [javac] URL url = new URL(urlPath);
#17 19.88 [javac] ^
#17 19.88 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.88 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 19.88 [javac] ^
#17 19.88 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.88 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 19.88 [javac] ^
#17 19.98 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.98 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 19.98 [javac] ^
#17 19.98 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.98 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 19.98 [javac] ^
#17 20.18 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 20.18 [javac] url = new URL(path);
#17 20.18 [javac] ^
#17 20.38 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 20.38 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 20.38 [javac] 13 warnings
#17 20.40
#17 20.40 bio-formats-plugins.jar:
#17 20.40 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 20.47 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#17 20.48 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#17 20.53 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#17 20.53 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 20.53 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 20.53
#17 20.53 deps-bio-formats-tools:
#17 20.53
#17 20.53 jar-bio-formats-tools:
#17 20.62 [echo] isSnapshot = true
#17 20.77
#17 20.77 init-title:
#17 20.77 [echo] ----------=========== bio-formats-tools ===========----------
#17 20.77
#17 20.77 init-timestamp:
#17 20.77
#17 20.77 init:
#17 20.77
#17 20.77 copy-resources:
#17 20.77 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 20.77
#17 20.77 compile:
#17 21.01 [resolver:resolve] Resolving artifacts
#17 21.02 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 21.22 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 21.22 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 21.22 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 21.22 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 21.22 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 21.22 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 22.42 [javac] 4 warnings
#17 22.46
#17 22.46 bio-formats-tools.jar:
#17 22.46 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 22.47 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#17 22.47 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#17 22.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#17 22.48 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 22.48 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 22.48
#17 22.48 deps-tests:
#17 22.48
#17 22.48 jar-tests:
#17 22.57 [echo] isSnapshot = true
#17 22.70
#17 22.70 init-title:
#17 22.70 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 22.70
#17 22.70 init-timestamp:
#17 22.70
#17 22.70 init:
#17 22.70
#17 22.70 copy-resources:
#17 22.70 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 22.70
#17 22.70 compile:
#17 23.00 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.12 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.47 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.49 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.92 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.34 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 24.35 [resolver:resolve] Resolving artifacts
#17 24.36 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.46 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.81 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.82 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.23 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.59 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 25.59 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 25.80 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 25.80 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 25.80 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 25.80 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 25.80 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 25.80 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 26.90 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.90 [javac] int index = unflattenedReader.getCoreIndex();
#17 26.90 [javac] ^
#17 26.90 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 26.90 [javac] reader.setCoreIndex(index);
#17 26.90 [javac] ^
#17 27.10 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 27.10 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 27.10 [javac] ^
#17 27.10 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 27.10 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 27.10 [javac] ^
#17 27.40 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 27.40 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 27.40 [javac] ^
#17 27.40 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 27.40 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 27.40 [javac] ^
#17 27.40 [javac] Note: Some input files use unchecked or unsafe operations.
#17 27.40 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 27.40 [javac] 10 warnings
#17 27.42
#17 27.42 tests.jar:
#17 27.42 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 27.44 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#17 27.44 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#17 27.48 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#17 27.48 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 27.49 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 27.49
#17 27.49 jars:
#17 27.49
#17 27.49 copy-jars:
#17 27.49
#17 27.49 deps-formats-api:
#17 27.54 [echo] isSnapshot = true
#17 27.58
#17 27.58 install-pom:
#17 27.70 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#17 27.70 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 27.70 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 27.70
#17 27.70 jar-formats-api:
#17 27.78 [echo] isSnapshot = true
#17 27.91
#17 27.91 init-title:
#17 27.91 [echo] ----------=========== formats-api ===========----------
#17 27.91
#17 27.91 init-timestamp:
#17 27.91
#17 27.91 init:
#17 27.91
#17 27.91 copy-resources:
#17 27.91
#17 27.91 compile:
#17 28.07 [resolver:resolve] Resolving artifacts
#17 28.08
#17 28.08 formats-api.jar:
#17 28.10 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#17 28.10 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#17 28.10 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#17 28.10 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 28.11 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 28.11
#17 28.11 deps-turbojpeg:
#17 28.11
#17 28.11 jar-turbojpeg:
#17 28.19 [echo] isSnapshot = true
#17 28.32
#17 28.32 init-title:
#17 28.32 [echo] ----------=========== turbojpeg ===========----------
#17 28.32
#17 28.32 init-timestamp:
#17 28.32
#17 28.32 init:
#17 28.32
#17 28.32 copy-resources:
#17 28.32
#17 28.32 compile:
#17 28.33 [resolver:resolve] Resolving artifacts
#17 28.33
#17 28.33 jar:
#17 28.33 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#17 28.34 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#17 28.34 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#17 28.34 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 28.34 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 28.34
#17 28.34 deps-formats-bsd:
#17 28.34
#17 28.34 jar-formats-bsd:
#17 28.43 [echo] isSnapshot = true
#17 28.55
#17 28.55 init-title:
#17 28.55 [echo] ----------=========== formats-bsd ===========----------
#17 28.55
#17 28.55 init-timestamp:
#17 28.55
#17 28.55 init:
#17 28.55
#17 28.55 copy-resources:
#17 28.55
#17 28.55 compile:
#17 28.74 [resolver:resolve] Resolving artifacts
#17 28.76
#17 28.76 formats-bsd.jar:
#17 28.80 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#17 28.80 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#17 28.80 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#17 28.80 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 28.80 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 28.80
#17 28.80 deps-formats-gpl:
#17 28.80
#17 28.80 jar-formats-gpl:
#17 28.88 [echo] isSnapshot = true
#17 29.01
#17 29.01 init-title:
#17 29.01 [echo] ----------=========== formats-gpl ===========----------
#17 29.01
#17 29.01 init-timestamp:
#17 29.01
#17 29.01 init:
#17 29.01
#17 29.01 copy-resources:
#17 29.01
#17 29.01 compile:
#17 29.24 [resolver:resolve] Resolving artifacts
#17 29.25
#17 29.25 formats-gpl.jar:
#17 29.28 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#17 29.29 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#17 29.29 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#17 29.29 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 29.29 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 29.29
#17 29.29 deps-bio-formats-plugins:
#17 29.29
#17 29.29 jar-bio-formats-plugins:
#17 29.37 [echo] isSnapshot = true
#17 29.51
#17 29.51 init-title:
#17 29.51 [echo] ----------=========== bio-formats_plugins ===========----------
#17 29.51
#17 29.51 init-timestamp:
#17 29.51
#17 29.51 init:
#17 29.51
#17 29.51 copy-resources:
#17 29.51
#17 29.51 compile:
#17 29.74 [resolver:resolve] Resolving artifacts
#17 29.75
#17 29.75 bio-formats-plugins.jar:
#17 29.77 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#17 29.77 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#17 29.77 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#17 29.77 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 29.77 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 29.77
#17 29.77 deps-bio-formats-tools:
#17 29.77
#17 29.77 jar-bio-formats-tools:
#17 29.85 [echo] isSnapshot = true
#17 29.98
#17 29.98 init-title:
#17 29.98 [echo] ----------=========== bio-formats-tools ===========----------
#17 29.98
#17 29.98 init-timestamp:
#17 29.98
#17 29.98 init:
#17 29.98
#17 29.98 copy-resources:
#17 29.98
#17 29.98 compile:
#17 30.22 [resolver:resolve] Resolving artifacts
#17 30.23
#17 30.23 bio-formats-tools.jar:
#17 30.23 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#17 30.24 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#17 30.24 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#17 30.24 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 30.24 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 30.24
#17 30.24 deps-tests:
#17 30.24
#17 30.24 jar-tests:
#17 30.32 [echo] isSnapshot = true
#17 30.45
#17 30.45 init-title:
#17 30.45 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 30.45
#17 30.45 init-timestamp:
#17 30.45
#17 30.45 init:
#17 30.45
#17 30.45 copy-resources:
#17 30.45
#17 30.45 compile:
#17 30.68 [resolver:resolve] Resolving artifacts
#17 30.69
#17 30.69 tests.jar:
#17 30.70 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#17 30.70 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#17 30.70 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#17 30.70 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 30.70 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 30.70
#17 30.70 jars:
#17 30.70
#17 30.70 tools:
#17 30.70 [echo] ----------=========== bioformats_package ===========----------
#17 30.79 [echo] isSnapshot = true
#17 30.92
#17 30.92 init-timestamp:
#17 30.92
#17 30.92 bundle:
#17 31.15 [resolver:resolve] Resolving artifacts
#17 31.16 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.19 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.1.2-SNAPSHOT/ome-common-6.1.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.21 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.23 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.24 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.29 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.31 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.35 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.36 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.56 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.60 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.62 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.67 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.68 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.69 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.69 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.83 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.26 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.26 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.27 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.27 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.34 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.35 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.35 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.2-SNAPSHOT/ome-xml-6.5.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.41 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.2-SNAPSHOT/specification-6.5.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.46 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.47 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.3-SNAPSHOT/ome-codecs-1.1.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.48 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.60 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.67 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.70 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.71 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.80 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.82 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.21 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.23 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.27 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.36 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.38 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.39 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.40 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.60 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.66 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.71 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.80 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.81 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.81 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.92 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.93 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.35 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.35 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.46 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.50 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.51 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.52 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.57 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.60 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.92 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.94 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.95 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.96 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.96 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.99 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.34 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.16/logback-core-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.43 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.16/logback-classic-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.80 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 42.47 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 43.00 [resolver:install] Using default POM (ome:bioformats_package:8.4.0-SNAPSHOT)
#17 43.01 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.pom
#17 43.06 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.jar
#17 43.10 [resolver:install] Installing ome:bioformats_package:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 43.10 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 43.11
#17 43.11 BUILD SUCCESSFUL
#17 43.11 Total time: 42 seconds
#17 DONE 44.7s
#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.0s
#19 exporting to image
#19 exporting layers
#19 exporting layers 3.2s done
#19 writing image sha256:8eca539c85eee2a0e6a8040503ae2cd919677e720ff3210170cd2a6975d41aa8 done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 3.2s
Finished: SUCCESS
