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#15 452.5 Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/32.1.0-jre/guava-32.1.0-jre.jar (3.0 MB at 14 MB/s)
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#15 453.3 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bundles/bioformats_package/target/bioformats_package-8.5.0-SNAPSHOT.jar
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#15 461.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.5.0-SNAPSHOT/bioformats_package-8.5.0-SNAPSHOT.pom
#15 461.0 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/target/bioformats_package-8.5.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bioformats_package/8.5.0-SNAPSHOT/bioformats_package-8.5.0-SNAPSHOT.jar
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#15 461.0 [[1;34mINFO[m] [1m---------------------------< [0;36mome:test-suite[0;1m >---------------------------[m
#15 461.0 [[1;34mINFO[m] [1mBuilding Bio-Formats testing framework 8.5.0-SNAPSHOT [20/24][m
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#15 461.3 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-parent/1.6.4/slf4j-parent-1.6.4.pom
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#15 461.3 Downloading from central: https://repo.maven.apache.org/maven2/org/hamcrest/hamcrest-core/1.2.1/hamcrest-core-1.2.1.pom
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#15 461.4 Downloading from central: https://repo.maven.apache.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#15 461.4 Downloading from ome: https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#15 461.4 Downloading from imagej.public: https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
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#15 464.2 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/test-suite' && 'git' 'rev-parse' '--verify' 'HEAD'
#15 464.2 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/test-suite
#15 464.2 [[1;34mINFO[m] Storing buildNumber: 67c8141e4bcdfdcfef2050b066ecd7b04d69be8e at timestamp: 1768522553860
#15 464.2 [[1;34mINFO[m] Storing buildScmBranch: merge_ci
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#15 464.2 [[1;34mINFO[m] Compiling 23 source files with javac [debug release 8] to target/classes
#15 464.5 [[1;33mWARNING[m] source value 8 is obsolete and will be removed in a future release
#15 464.5 [[1;33mWARNING[m] target value 8 is obsolete and will be removed in a future release
#15 464.5 [[1;33mWARNING[m] To suppress warnings about obsolete options, use -Xlint:-options.
#15 464.5 [[1;34mINFO[m] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java: Some input files use or override a deprecated API.
#15 464.5 [[1;34mINFO[m] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java: Recompile with -Xlint:deprecation for details.
#15 464.5 [[1;34mINFO[m] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/ConfigurationTree.java: Some input files use unchecked or unsafe operations.
#15 464.5 [[1;34mINFO[m] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/ConfigurationTree.java: Recompile with -Xlint:unchecked for details.
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#15 464.5 [[1;34mINFO[m] Recompiling the module because of [1mchanged dependency[m.
#15 464.5 [[1;34mINFO[m] Compiling 1 source file with javac [debug release 8] to target/test-classes
#15 464.6 [[1;33mWARNING[m] source value 8 is obsolete and will be removed in a future release
#15 464.6 [[1;33mWARNING[m] target value 8 is obsolete and will be removed in a future release
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#15 464.6 [[1;34mINFO[m] -------------------------------------------------------
#15 464.6 [[1;34mINFO[m] T E S T S
#15 464.6 [[1;34mINFO[m] -------------------------------------------------------
#15 464.8 [[1;34mINFO[m] Running loci.tests.testng.[1mConfigurationTreeTest[m
#15 465.1 [[1;34mINFO[m] [1;32mTests run: [0;1;32m16[m, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.312 s - in loci.tests.testng.[1mConfigurationTreeTest[m
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#15 465.4 [[1;34mINFO[m] Results:
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#15 465.4 [[1;34mINFO[m] [1;32mTests run: 16, Failures: 0, Errors: 0, Skipped: 0[m
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#15 465.4 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/test-suite/target/test-suite-8.5.0-SNAPSHOT.jar
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#15 465.4 [[1;34mINFO[m] Executing: /bin/sh -c cd '/bio-formats-build/bioformats/components/test-suite' && 'git' 'rev-parse' '--verify' 'HEAD'
#15 465.4 [[1;34mINFO[m] Working directory: /bio-formats-build/bioformats/components/test-suite
#15 465.4 [[1;34mINFO[m] Storing buildNumber: 67c8141e4bcdfdcfef2050b066ecd7b04d69be8e at timestamp: 1768522555069
#15 465.4 [[1;34mINFO[m] Storing buildScmBranch: merge_ci
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#15 466.5 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/2.0.5/plexus-utils-2.0.5.jar
#15 466.5 Progress (3): 14 kB | 37 kB | 2.3/10 kB
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#15 466.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-exec/1.1/commons-exec-1.1.jar
#15 466.5 Progress (3): 37 kB | 10 kB | 4.1/13 kB
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Progr
#15 466.5 [output clipped, log limit 2MiB reached]
#15 495.9 WARNING: A restricted method in java.lang.System has been called
#15 495.9 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#15 495.9 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#15 495.9 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#15 495.9
#15 539.2 SLF4J: No SLF4J providers were found.
#15 539.2 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 539.2 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 539.5 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 539.5 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 539.5 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 539.5 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 547.1s
#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.0s
#17 [13/14] RUN ant jars tools
#17 0.674 Buildfile: /bio-formats-build/bioformats/build.xml
#17 1.137 [echo] isSnapshot = true
#17 3.243
#17 3.243 copy-jars:
#17 3.243
#17 3.243 deps-formats-api:
#17 3.327 [echo] isSnapshot = true
#17 3.382
#17 3.382 install-pom:
#17 3.565 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.5.0-SNAPSHOT/pom-bio-formats-8.5.0-SNAPSHOT.pom
#17 3.577 [resolver:install] Installing ome:pom-bio-formats:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 3.580 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 3.582
#17 3.582 jar-formats-api:
#17 3.689 [echo] isSnapshot = true
#17 3.852
#17 3.852 init-title:
#17 3.853 [echo] ----------=========== formats-api ===========----------
#17 3.853
#17 3.853 init-timestamp:
#17 3.861
#17 3.861 init:
#17 3.861
#17 3.861 copy-resources:
#17 3.862 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.879 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.880
#17 3.880 compile:
#17 4.065 [resolver:resolve] Resolving artifacts
#17 4.097 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 4.315 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 4.315 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 4.315 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 4.315 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 4.315 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 4.315 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 5.016 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 5.016 [javac] import loci.common.ReflectedUniverse;
#17 5.017 [javac] ^
#17 5.217 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.217 [javac] int currentIndex = r.getCoreIndex();
#17 5.217 [javac] ^
#17 5.217 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.217 [javac] r.setCoreIndex(coreIndex);
#17 5.217 [javac] ^
#17 5.217 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.217 [javac] r.setCoreIndex(currentIndex);
#17 5.217 [javac] ^
#17 5.318 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.318 [javac] public void setCoreIndex(int no) {
#17 5.318 [javac] ^
#17 5.318 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.318 [javac] public int getCoreIndex() {
#17 5.318 [javac] ^
#17 5.418 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.418 [javac] public int coreIndexToSeries(int index)
#17 5.418 [javac] ^
#17 5.418 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.418 [javac] public int seriesToCoreIndex(int series)
#17 5.418 [javac] ^
#17 5.419 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.419 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 5.419 [javac] ^
#17 5.419 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.419 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 5.419 [javac] ^
#17 5.419 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.419 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 5.420 [javac] ^
#17 5.420 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.420 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 5.420 [javac] ^
#17 5.420 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.420 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 5.420 [javac] ^
#17 5.520 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 5.520 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 5.520 [javac] ^
#17 5.520 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 5.520 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 5.520 [javac] ^
#17 5.521 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 5.521 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 5.521 [javac] ^
#17 5.621 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.621 [javac] public void setCoreIndex(int no) {
#17 5.621 [javac] ^
#17 5.621 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.621 [javac] public int getCoreIndex() {
#17 5.621 [javac] ^
#17 5.621 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.621 [javac] public int coreIndexToSeries(int index) {
#17 5.622 [javac] ^
#17 5.622 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.622 [javac] public int seriesToCoreIndex(int series) {
#17 5.622 [javac] ^
#17 5.622 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.622 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 5.622 [javac] ^
#17 5.622 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.622 [javac] return getReader().getCoreMetadataList();
#17 5.622 [javac] ^
#17 5.622 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.622 [javac] return getReader().getCoreIndex();
#17 5.622 [javac] ^
#17 5.622 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.622 [javac] getReader().setCoreIndex(no);
#17 5.622 [javac] ^
#17 5.622 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.622 [javac] return getReader().seriesToCoreIndex(series);
#17 5.622 [javac] ^
#17 5.623 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.623 [javac] return getReader().coreIndexToSeries(index);
#17 5.623 [javac] ^
#17 5.723 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.723 [javac] public void setCoreIndex(int no) {
#17 5.723 [javac] ^
#17 5.723 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.723 [javac] public int getCoreIndex() {
#17 5.723 [javac] ^
#17 5.723 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.723 [javac] public int coreIndexToSeries(int index) {
#17 5.723 [javac] ^
#17 5.723 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.723 [javac] public int seriesToCoreIndex(int series) {
#17 5.723 [javac] ^
#17 5.723 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.723 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 5.723 [javac] ^
#17 5.724 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.724 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 5.724 [javac] ^
#17 5.724 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.724 [javac] return reader.getCoreIndex();
#17 5.724 [javac] ^
#17 5.724 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.724 [javac] reader.setCoreIndex(no);
#17 5.724 [javac] ^
#17 5.724 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.724 [javac] return reader.seriesToCoreIndex(series);
#17 5.724 [javac] ^
#17 5.724 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.724 [javac] return reader.coreIndexToSeries(index);
#17 5.724 [javac] ^
#17 5.906 [javac] Note: Some input files use unchecked or unsafe operations.
#17 5.906 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 5.906 [javac] 40 warnings
#17 5.906
#17 5.906 formats-api.jar:
#17 5.906 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 5.934 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 5.968 [resolver:install] Using default POM (ome:formats-api:8.5.0-SNAPSHOT)
#17 5.971 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.pom
#17 5.972 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.jar
#17 5.973 [resolver:install] Installing ome:formats-api:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 5.975 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 5.976
#17 5.976 deps-turbojpeg:
#17 5.976
#17 5.976 jar-turbojpeg:
#17 6.075 [echo] isSnapshot = true
#17 6.215
#17 6.215 init-title:
#17 6.215 [echo] ----------=========== turbojpeg ===========----------
#17 6.215
#17 6.215 init-timestamp:
#17 6.215
#17 6.215 init:
#17 6.215
#17 6.215 copy-resources:
#17 6.216 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 6.217
#17 6.217 compile:
#17 6.226 [resolver:resolve] Resolving artifacts
#17 6.229 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 6.432 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 6.432 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 6.432 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 6.432 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 6.432 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 6.432 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 7.133 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 7.133 [javac] protected void finalize() throws Throwable {
#17 7.133 [javac] ^
#17 7.133 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 7.133 [javac] super.finalize();
#17 7.133 [javac] ^
#17 7.185 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 7.185 [javac] protected void finalize() throws Throwable {
#17 7.185 [javac] ^
#17 7.185 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 7.185 [javac] super.finalize();
#17 7.185 [javac] ^
#17 7.185 [javac] 8 warnings
#17 7.186
#17 7.186 jar:
#17 7.190 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 7.373 [resolver:install] Using default POM (ome:turbojpeg:8.5.0-SNAPSHOT)
#17 7.380 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.pom
#17 7.383 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.jar
#17 7.385 [resolver:install] Installing ome:turbojpeg:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 7.388 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 7.389
#17 7.389 deps-formats-bsd:
#17 7.389
#17 7.389 jar-formats-bsd:
#17 7.510 [echo] isSnapshot = true
#17 7.656
#17 7.656 init-title:
#17 7.656 [echo] ----------=========== formats-bsd ===========----------
#17 7.656
#17 7.656 init-timestamp:
#17 7.657
#17 7.657 init:
#17 7.657
#17 7.657 copy-resources:
#17 7.657 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.660 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.661
#17 7.661 compile:
#17 7.883 [resolver:resolve] Resolving artifacts
#17 7.907 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 8.114 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 8.114 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 8.114 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 8.114 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 8.114 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 8.114 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 9.316 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 9.316 [javac] import loci.common.ReflectedUniverse;
#17 9.316 [javac] ^
#17 9.716 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.716 [javac] core.size() != reader.getCoreMetadataList().size())
#17 9.716 [javac] ^
#17 9.716 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.716 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 9.716 [javac] ^
#17 9.716 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.716 [javac] int n = reader.getCoreMetadataList().size();
#17 9.716 [javac] ^
#17 9.716 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 9.716 [javac] reader.setCoreIndex(coreIndex);
#17 9.716 [javac] ^
#17 9.716 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.716 [javac] int n = reader.getCoreMetadataList().size();
#17 9.716 [javac] ^
#17 9.716 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.717 [javac] int n = reader.getCoreMetadataList().size();
#17 9.717 [javac] ^
#17 9.717 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 9.717 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 9.717 [javac] ^
#17 9.717 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.717 [javac] int n = reader.getCoreMetadataList().size();
#17 9.717 [javac] ^
#17 9.717 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 9.717 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 9.717 [javac] ^
#17 9.717 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.717 [javac] int n = reader.getCoreMetadataList().size();
#17 9.717 [javac] ^
#17 9.717 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 9.717 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 9.717 [javac] ^
#17 9.717 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 9.717 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 9.717 [javac] ^
#17 9.717 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 9.717 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 9.717 [javac] ^
#17 9.817 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.817 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#17 9.817 [javac] ^
#17 9.817 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.817 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 9.817 [javac] ^
#17 9.817 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.817 [javac] seriesCount = reader.getCoreMetadataList().size();
#17 9.817 [javac] ^
#17 9.817 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.818 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 9.818 [javac] ^
#17 9.818 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.818 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#17 9.818 [javac] ^
#17 9.818 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.818 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 9.818 [javac] ^
#17 9.918 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.918 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#17 9.918 [javac] ^
#17 9.918 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 9.918 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#17 9.918 [javac] ^
#17 9.918 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 9.918 [javac] URL url = new URL(urlPath);
#17 9.918 [javac] ^
#17 10.02 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 10.02 [javac] BitWriter out = new BitWriter();
#17 10.02 [javac] ^
#17 10.02 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 10.02 [javac] BitWriter out = new BitWriter();
#17 10.02 [javac] ^
#17 10.22 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 10.22 [javac] return new Double(v);
#17 10.22 [javac] ^
#17 10.72 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2129: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 10.72 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 10.72 [javac] ^
#17 10.72 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2136: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 10.72 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 10.72 [javac] ^
#17 10.72 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2143: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 10.72 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 10.72 [javac] ^
#17 10.92 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 10.92 [javac] channelNames.put(new Integer(channelNames.size()), value);
#17 10.92 [javac] ^
#17 11.02 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.02 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 11.02 [javac] ^
#17 11.12 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 11.12 [javac] StreamTokenizer st = new StreamTokenizer(in);
#17 11.12 [javac] ^
#17 11.22 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 11.22 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 11.22 [javac] ^
#17 11.22 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.22 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 11.22 [javac] ^
#17 11.22 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 11.22 [javac] protected ReflectedUniverse r;
#17 11.22 [javac] ^
#17 11.22 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 11.22 [javac] r = new ReflectedUniverse();
#17 11.22 [javac] ^
#17 11.32 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#17 11.32 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 11.32 [javac] ^
#17 11.32 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#17 11.32 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 11.32 [javac] ^
#17 11.32 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#17 11.32 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 11.32 [javac] ^
#17 11.32 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 11.32 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 11.32 [javac] ^
#17 11.32 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1111: warning: [deprecation] MM in UNITS has been deprecated
#17 11.32 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 11.32 [javac] ^
#17 11.32 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1115: warning: [deprecation] MM in UNITS has been deprecated
#17 11.32 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 11.32 [javac] ^
#17 11.32 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1121: warning: [deprecation] MM in UNITS has been deprecated
#17 11.32 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 11.32 [javac] ^
#17 11.32 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1169: warning: [deprecation] MM in UNITS has been deprecated
#17 11.32 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 11.32 [javac] ^
#17 11.32 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1174: warning: [deprecation] MM in UNITS has been deprecated
#17 11.32 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 11.32 [javac] ^
#17 11.42 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 11.42 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 11.42 [javac] ^
#17 11.42 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 11.42 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 11.42 [javac] ^
#17 11.42 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 11.42 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 11.42 [javac] ^
#17 11.42 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 11.42 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 11.42 [javac] ^
#17 11.42 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 11.42 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 11.42 [javac] ^
#17 11.50 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 11.50 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#17 11.50 [javac] ^
#17 11.50 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 11.50 [javac] result[i] = new Double(readNumber().doubleValue());
#17 11.50 [javac] ^
#17 11.50 [javac] Note: Some input files use unchecked or unsafe operations.
#17 11.50 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 11.50 [javac] 56 warnings
#17 11.50
#17 11.50 formats-bsd.jar:
#17 11.51 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 11.63 [resolver:install] Using default POM (ome:formats-bsd:8.5.0-SNAPSHOT)
#17 11.64 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.pom
#17 11.64 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.jar
#17 11.64 [resolver:install] Installing ome:formats-bsd:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 11.64 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 11.64
#17 11.64 deps-formats-gpl:
#17 11.64
#17 11.64 jar-formats-gpl:
#17 11.74 [echo] isSnapshot = true
#17 11.87
#17 11.87 init-title:
#17 11.87 [echo] ----------=========== formats-gpl ===========----------
#17 11.87
#17 11.87 init-timestamp:
#17 11.87
#17 11.87 init:
#17 11.87
#17 11.87 copy-resources:
#17 11.87 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 11.87 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 11.87
#17 11.87 compile:
#17 12.21 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 12.70 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 13.08 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#17 13.09 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 13.26 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 13.38 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#17 13.45 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 13.66 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 13.78 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#17 13.82 [resolver:resolve] Resolving artifacts
#17 13.83 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 13.83 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 14.07 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 14.07 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 14.42 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#17 14.42 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#17 14.44 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 14.65 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 14.65 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 14.65 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 14.65 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 14.65 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 14.75 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 15.95 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.95 [javac] import loci.formats.codec.BitWriter;
#17 15.95 [javac] ^
#17 15.95 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.95 [javac] import loci.formats.codec.BitWriter;
#17 15.95 [javac] ^
#17 17.95 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 17.95 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#17 17.95 [javac] ^
#17 17.95 [javac] cast to Object for a varargs call
#17 17.95 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#17 18.05 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 18.05 [javac] BitWriter bits = null;
#17 18.05 [javac] ^
#17 18.05 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 18.05 [javac] bits = new BitWriter(planes[index].length / 8);
#17 18.05 [javac] ^
#17 18.35 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 18.35 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 18.35 [javac] ^
#17 18.75 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 18.75 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 18.75 [javac] ^
#17 18.75 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 18.75 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 18.75 [javac] ^
#17 18.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 18.85 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 18.85 [javac] ^
#17 18.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 18.85 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 18.85 [javac] ^
#17 19.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 19.12 [javac] Variable variable = group.findVariable(variableName);
#17 19.12 [javac] ^
#17 19.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 19.12 [javac] Variable variable = group.findVariable(variableName);
#17 19.12 [javac] ^
#17 19.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 19.12 [javac] List<Attribute> attributes = variable.getAttributes();
#17 19.12 [javac] ^
#17 19.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#17 19.12 [javac] String groupName = group.getName();
#17 19.12 [javac] ^
#17 19.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#17 19.12 [javac] List<Attribute> attributes = group.getAttributes();
#17 19.12 [javac] ^
#17 19.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#17 19.12 [javac] String variableName = variable.getName();
#17 19.12 [javac] ^
#17 19.12 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 19.12 [javac] Group nextParent = parent.findGroup(token);
#17 19.12 [javac] ^
#17 19.12 [javac] Note: Some input files use unchecked or unsafe operations.
#17 19.12 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 19.12 [javac] 21 warnings
#17 19.12
#17 19.12 formats-gpl.jar:
#17 19.13 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 19.27 [resolver:install] Using default POM (ome:formats-gpl:8.5.0-SNAPSHOT)
#17 19.28 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.pom
#17 19.28 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.jar
#17 19.28 [resolver:install] Installing ome:formats-gpl:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 19.28 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 19.28
#17 19.28 deps-bio-formats-plugins:
#17 19.28
#17 19.28 jar-bio-formats-plugins:
#17 19.38 [echo] isSnapshot = true
#17 19.52
#17 19.52 init-title:
#17 19.52 [echo] ----------=========== bio-formats_plugins ===========----------
#17 19.52
#17 19.52 init-timestamp:
#17 19.52
#17 19.52 init:
#17 19.52
#17 19.52 copy-resources:
#17 19.52 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 19.52 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 19.52
#17 19.52 compile:
#17 19.78 [resolver:resolve] Resolving artifacts
#17 19.79 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 20.10 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 20.10 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 20.10 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 20.10 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 20.10 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 20.10 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 20.90 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 20.90 [javac] import loci.common.ReflectedUniverse;
#17 20.90 [javac] ^
#17 20.90 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 20.90 [javac] import loci.common.ReflectedUniverse;
#17 20.90 [javac] ^
#17 21.30 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 21.30 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 21.30 [javac] ^
#17 21.40 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 21.40 [javac] URL url = new URL(urlPath);
#17 21.40 [javac] ^
#17 21.50 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.50 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 21.50 [javac] ^
#17 21.50 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.50 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 21.50 [javac] ^
#17 21.60 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.60 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 21.60 [javac] ^
#17 21.60 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 21.60 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 21.60 [javac] ^
#17 21.80 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 21.80 [javac] url = new URL(path);
#17 21.80 [javac] ^
#17 22.05 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 22.05 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 22.05 [javac] 13 warnings
#17 22.06
#17 22.06 bio-formats-plugins.jar:
#17 22.06 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 22.09 [resolver:install] Using default POM (ome:bio-formats_plugins:8.5.0-SNAPSHOT)
#17 22.09 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.pom
#17 22.09 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.jar
#17 22.09 [resolver:install] Installing ome:bio-formats_plugins:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 22.10 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 22.10
#17 22.10 deps-bio-formats-tools:
#17 22.10
#17 22.10 jar-bio-formats-tools:
#17 22.19 [echo] isSnapshot = true
#17 22.31
#17 22.31 init-title:
#17 22.31 [echo] ----------=========== bio-formats-tools ===========----------
#17 22.31
#17 22.31 init-timestamp:
#17 22.32
#17 22.32 init:
#17 22.32
#17 22.32 copy-resources:
#17 22.32 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 22.32
#17 22.32 compile:
#17 22.56 [resolver:resolve] Resolving artifacts
#17 22.57 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 22.78 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 22.78 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 22.78 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 22.78 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 22.78 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 22.78 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 23.93 [javac] 4 warnings
#17 23.94
#17 23.94 bio-formats-tools.jar:
#17 23.94 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 23.95 [resolver:install] Using default POM (ome:bio-formats-tools:8.5.0-SNAPSHOT)
#17 23.95 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.pom
#17 23.95 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.jar
#17 23.95 [resolver:install] Installing ome:bio-formats-tools:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 23.95 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 23.95
#17 23.95 deps-tests:
#17 23.95
#17 23.95 jar-tests:
#17 24.04 [echo] isSnapshot = true
#17 24.18
#17 24.18 init-title:
#17 24.18 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 24.18
#17 24.18 init-timestamp:
#17 24.18
#17 24.18 init:
#17 24.18
#17 24.18 copy-resources:
#17 24.18 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 24.18
#17 24.18 compile:
#17 24.47 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.56 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.92 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.94 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 25.36 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 25.82 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 25.84 [resolver:resolve] Resolving artifacts
#17 25.85 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.91 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 26.27 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 26.27 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 26.68 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 27.04 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 27.05 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 27.25 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 27.25 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 27.25 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 27.25 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 27.25 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 27.25 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 28.35 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 28.35 [javac] int index = unflattenedReader.getCoreIndex();
#17 28.35 [javac] ^
#17 28.35 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 28.35 [javac] reader.setCoreIndex(index);
#17 28.35 [javac] ^
#17 28.55 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 28.55 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 28.55 [javac] ^
#17 28.55 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 28.55 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 28.55 [javac] ^
#17 28.86 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 28.86 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 28.86 [javac] ^
#17 28.86 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 28.86 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 28.86 [javac] ^
#17 28.89 [javac] Note: Some input files use unchecked or unsafe operations.
#17 28.89 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 28.89 [javac] 10 warnings
#17 28.89
#17 28.89 tests.jar:
#17 28.90 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 28.91 [resolver:install] Using default POM (ome:test-suite:8.5.0-SNAPSHOT)
#17 28.92 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.pom
#17 28.92 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.jar
#17 28.92 [resolver:install] Installing ome:test-suite:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 28.92 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 28.92
#17 28.92 jars:
#17 28.92
#17 28.92 copy-jars:
#17 28.92
#17 28.92 deps-formats-api:
#17 28.97 [echo] isSnapshot = true
#17 29.01
#17 29.01 install-pom:
#17 29.13 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.5.0-SNAPSHOT/pom-bio-formats-8.5.0-SNAPSHOT.pom
#17 29.13 [resolver:install] Installing ome:pom-bio-formats:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 29.13 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 29.13
#17 29.13 jar-formats-api:
#17 29.21 [echo] isSnapshot = true
#17 29.34
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#17 29.34 [echo] ----------=========== formats-api ===========----------
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#17 29.49 [resolver:resolve] Resolving artifacts
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#17 29.50 formats-api.jar:
#17 29.52 [resolver:install] Using default POM (ome:formats-api:8.5.0-SNAPSHOT)
#17 29.52 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.pom
#17 29.52 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/formats-api-8.5.0-SNAPSHOT.jar
#17 29.52 [resolver:install] Installing ome:formats-api:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 29.52 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
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#17 29.53 deps-turbojpeg:
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#17 29.73 [echo] ----------=========== turbojpeg ===========----------
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#17 29.75 [resolver:install] Using default POM (ome:turbojpeg:8.5.0-SNAPSHOT)
#17 29.75 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.pom
#17 29.75 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.jar
#17 29.75 [resolver:install] Installing ome:turbojpeg:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 29.76 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
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#17 29.96 [echo] ----------=========== formats-bsd ===========----------
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#17 30.17 formats-bsd.jar:
#17 30.20 [resolver:install] Using default POM (ome:formats-bsd:8.5.0-SNAPSHOT)
#17 30.20 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.pom
#17 30.20 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.jar
#17 30.20 [resolver:install] Installing ome:formats-bsd:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 30.20 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
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#17 30.40 [echo] ----------=========== formats-gpl ===========----------
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#17 30.68 [resolver:install] Using default POM (ome:formats-gpl:8.5.0-SNAPSHOT)
#17 30.68 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.pom
#17 30.69 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.jar
#17 30.69 [resolver:install] Installing ome:formats-gpl:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 30.69 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
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#17 30.69 deps-bio-formats-plugins:
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#17 30.89 [echo] ----------=========== bio-formats_plugins ===========----------
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#17 31.14 [resolver:install] Using default POM (ome:bio-formats_plugins:8.5.0-SNAPSHOT)
#17 31.15 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.pom
#17 31.15 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.jar
#17 31.15 [resolver:install] Installing ome:bio-formats_plugins:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 31.15 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
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#17 31.15 deps-bio-formats-tools:
#17 31.15
#17 31.15 jar-bio-formats-tools:
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#17 31.35
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#17 31.36 [echo] ----------=========== bio-formats-tools ===========----------
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#17 31.36 compile:
#17 31.58 [resolver:resolve] Resolving artifacts
#17 31.59
#17 31.59 bio-formats-tools.jar:
#17 31.59 [resolver:install] Using default POM (ome:bio-formats-tools:8.5.0-SNAPSHOT)
#17 31.59 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.pom
#17 31.59 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.jar
#17 31.59 [resolver:install] Installing ome:bio-formats-tools:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 31.60 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
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#17 31.60 deps-tests:
#17 31.60
#17 31.60 jar-tests:
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#17 31.81 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 31.81
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#17 31.81
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#17 32.04 tests.jar:
#17 32.05 [resolver:install] Using default POM (ome:test-suite:8.5.0-SNAPSHOT)
#17 32.05 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.pom
#17 32.05 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/test-suite-8.5.0-SNAPSHOT.jar
#17 32.05 [resolver:install] Installing ome:test-suite:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 32.06 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 32.06
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#17 32.06
#17 32.06 tools:
#17 32.06 [echo] ----------=========== bioformats_package ===========----------
#17 32.14 [echo] isSnapshot = true
#17 32.26
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#17 32.26
#17 32.26 bundle:
#17 32.49 [resolver:resolve] Resolving artifacts
#17 32.50 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.5.0-SNAPSHOT/bio-formats_plugins-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.53 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.1.3-SNAPSHOT/ome-common-6.1.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.55 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.58 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.58 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.63 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.65 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.70 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.71 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.90 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.95 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.96 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 33.02 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.03 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 33.18 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 33.61 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 33.70 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.3-SNAPSHOT/ome-xml-6.5.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.75 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.3-SNAPSHOT/specification-6.5.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 33.95 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.5.0-SNAPSHOT/formats-bsd-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.01 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.5.0-SNAPSHOT/turbojpeg-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 34.74 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 35.02 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.07 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.5.0-SNAPSHOT/formats-gpl-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.16 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.18 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.18 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 35.74 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.84 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.89 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.90 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.91 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.96 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.99 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.32 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.34 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.34 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.35 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.5.0-SNAPSHOT/bio-formats-tools-8.5.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.36 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.39 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.74 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.16/logback-core-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.84 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.16/logback-classic-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.22 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 43.98 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 44.52 [resolver:install] Using default POM (ome:bioformats_package:8.5.0-SNAPSHOT)
#17 44.52 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.5.0-SNAPSHOT/bioformats_package-8.5.0-SNAPSHOT.pom
#17 44.52 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.5.0-SNAPSHOT/bioformats_package-8.5.0-SNAPSHOT.jar
#17 44.56 [resolver:install] Installing ome:bioformats_package:8.5.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.5.0-SNAPSHOT/maven-metadata-local.xml
#17 44.56 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 44.57
#17 44.57 BUILD SUCCESSFUL
#17 44.57 Total time: 43 seconds
#17 DONE 45.0s
#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.0s
#19 exporting to image
#19 exporting layers
#19 exporting layers 3.2s done
#19 writing image sha256:85528e185bfc8c29f739526e238c2b60cb8298f41d6eb35343c6d96cf6c1236b done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 3.2s
Finished: SUCCESS
