Console Output

Skipping 2,105 KB.. Full Log
#14 437.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.8/plexus-utils-3.0.8.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar (282 kB at 1.1 MB/s)
#14 437.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.15/plexus-interpolation-1.15.jar
#14 437.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf-proto/1.9/hawtbuf-proto-1.9.jar (27 kB at 102 kB/s)
#14 437.4 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/aether/aether-api/1.13.1/aether-api-1.13.1.jar
#14 437.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/fusesource/hawtbuf/hawtbuf/1.9/hawtbuf-1.9.jar (50 kB at 186 kB/s)
#14 437.4 Downloading from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.1.2/logback-core-1.1.2.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/httpclient/4.3.5/httpclient-4.3.5.jar (591 kB at 2.1 MB/s)
#14 437.4 Downloading from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.1.2/logback-classic-1.1.2.jar
#14 437.4 Progress (1): 53/232 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.15/plexus-interpolation-1.15.jar (60 kB at 207 kB/s)
#14 437.4 Progress (4): 232 kB | 90 kB | 175/428 kB | 61/271 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.8/plexus-utils-3.0.8.jar (232 kB at 781 kB/s)
#14 437.4 Progress (3): 90 kB | 257/428 kB | 139/271 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/aether/aether-api/1.13.1/aether-api-1.13.1.jar (90 kB at 302 kB/s)
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Downloaded from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.1.2/logback-classic-1.1.2.jar (271 kB at 860 kB/s)
#14 437.4 Downloaded from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.1.2/logback-core-1.1.2.jar (428 kB at 1.4 MB/s)
#14 437.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/2.5.0/maven-bundle-plugin-2.5.0.pom
#14 437.6 Progress (1): 4.1/4.7 kB
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#14 437.7 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/bndlib/2.3.0/bndlib-2.3.0.pom
#14 437.7 Progress (1): 1.4 kB
                    
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#14 437.7 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/parent/2.3.0/parent-2.3.0.pom
#14 437.7 Progress (1): 4.1/4.1 kB
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#14 437.7 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/4.3.1/org.osgi.core-4.3.1.pom
#14 437.7 Progress (1): 1.4 kB
                    
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#14 437.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/2.0.7/maven-core-2.0.7.pom
#14 437.7 Progress (1): 4.1/6.7 kB
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#14 437.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/2.0.7/maven-2.0.7.pom
#14 437.8 Progress (1): 4.1/11 kB
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#14 437.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-parent/5/maven-parent-5.pom
#14 437.8 Progress (1): 4.1/15 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-parent/5/maven-parent-5.pom (15 kB at 635 kB/s)
#14 437.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.7/maven-settings-2.0.7.pom
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.7/maven-settings-2.0.7.jar (49 kB at 1.4 MB/s)
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-parameter-documenter/2.0.7/maven-plugin-parameter-documenter-2.0.7.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/2.5.0/maven-bundle-plugin-2.5.0.jar (175 kB at 3.6 MB/s)
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.7/maven-reporting-api-2.0.7.jar
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#14 440.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-profile/2.0.7/maven-profile-2.0.7.jar
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#14 440.3 Downloaded from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/4.3.1/org.osgi.core-4.3.1.jar (350 kB at 5.6 MB/s)
#14 440.3 Progress (3): 1.0/1.8 MB | 9.9 kB | 12/35 kB
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#14 440.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.7/maven-model-2.0.7.jar
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#14 440.3 Progress (2): 1.2/1.8 MB | 35 kB
                                
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#14 440.3 Progress (3): 1.3/1.8 MB | 16/88 kB | 8.2/86 kB
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#14 440.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-project/2.0.7/maven-project-2.0.7.jar
#14 440.3 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.7/maven-model-2.0.7.jar (86 kB at 920 kB/s)
#14 440.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-registry/2.0.7/maven-plugin-registry-2.0.7.jar
#14 440.3 Progress (3): 1.7/1.8 MB | 24 kB | 14 kB
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#14 440.3 Progress (2): 1.8 MB | 14 kB
                            
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#14 440.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-error-diagnostics/2.0.7/maven-error-diagnostics-2.0.7.jar (14 kB at 133 kB/s)
#14 440.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/2.0.7/maven-plugin-api-2.0.7.jar
#14 440.4 Progress (2): 1.8 MB | 4.1/117 kB
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#14 440.4 Progress (3): 117 kB | 29 kB | 8.2/30 kB
                                        
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#14 440.4 Progress (3): 117 kB | 29 kB | 12/30 kB
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#14 440.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact-manager/2.0.7/maven-artifact-manager-2.0.7.jar
#14 440.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-project/2.0.7/maven-project-2.0.7.jar (117 kB at 948 kB/s)
#14 440.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-monitor/2.0.7/maven-monitor-2.0.7.jar
#14 440.4 Progress (3): 30 kB | 13 kB | 4.1/37 kB
                                       
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#14 440.4 Progress (2): 13 kB | 8.2/37 kB
                               
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#14 440.4 Progress (2): 13 kB | 12/37 kB
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#14 440.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/2.1/plexus-archiver-2.1.jar
#14 440.4 Progress (2): 37 kB | 4.1/57 kB
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#14 440.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-io/2.0.2/plexus-io-2.0.2.jar
#14 440.4 Progress (4): 57 kB | 10 kB | 22 kB | 4.1/184 kB
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#14 440.4 Downloading from centr
#14 440.4 [output clipped, log limit 2MiB reached]
#14 539.9 SLF4J: No SLF4J providers were found.
#14 539.9 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 539.9 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 553.8s

#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s

#16 [12/13] RUN ant jars tools
#16 0.922 Buildfile: /bio-formats-build/bioformats/build.xml
#16 2.319      [echo] isSnapshot = true
#16 2.645 
#16 2.645 copy-jars:
#16 2.645 
#16 2.645 deps-formats-api:
#16 2.726      [echo] isSnapshot = true
#16 2.784 
#16 2.784 install-pom:
#16 2.988 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 3.355 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 3.426 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 3.428 
#16 3.428 jar-formats-api:
#16 3.781      [echo] isSnapshot = true
#16 3.967 
#16 3.967 init-title:
#16 3.967      [echo] ----------=========== formats-api ===========----------
#16 3.967 
#16 3.967 init-timestamp:
#16 3.971 
#16 3.971 init:
#16 3.971 
#16 3.971 copy-resources:
#16 3.972     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.987      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.064 
#16 4.064 compile:
#16 5.920 [resolver:resolve] Resolving artifacts
#16 6.014     [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 9.036     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.036     [javac] import loci.common.ReflectedUniverse;
#16 9.037     [javac]                   ^
#16 9.237     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 9.237     [javac]     int currentIndex = r.getCoreIndex();
#16 9.237     [javac]                         ^
#16 9.237     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.237     [javac]     r.setCoreIndex(coreIndex);
#16 9.237     [javac]      ^
#16 9.237     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.237     [javac]     r.setCoreIndex(currentIndex);
#16 9.237     [javac]      ^
#16 9.438     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.438     [javac]   public void setCoreIndex(int no) {
#16 9.438     [javac]               ^
#16 9.438     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 9.438     [javac]   public int getCoreIndex() {
#16 9.438     [javac]              ^
#16 9.438     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 9.438     [javac]   public int coreIndexToSeries(int index)
#16 9.438     [javac]              ^
#16 9.438     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 9.438     [javac]   public int seriesToCoreIndex(int series)
#16 9.438     [javac]              ^
#16 9.438     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.438     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 9.438     [javac]                             ^
#16 9.539     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.539     [javac]     if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 9.539     [javac]                                              ^
#16 9.539     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.539     [javac]     if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 9.539     [javac]                                              ^
#16 9.539     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.539     [javac]       core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 9.539     [javac]                                                      ^
#16 9.539     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.539     [javac]       core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 9.539     [javac]                                                      ^
#16 9.640     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.640     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 9.640     [javac]     ^
#16 9.640     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 9.640     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 9.640     [javac]                               ^
#16 9.640     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.640     [javac]   public void setCoreIndex(int no) {
#16 9.640     [javac]               ^
#16 9.640     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 9.640     [javac]   public int getCoreIndex() {
#16 9.640     [javac]              ^
#16 9.640     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 9.640     [javac]   public int coreIndexToSeries(int index) {
#16 9.640     [javac]              ^
#16 9.640     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 9.641     [javac]   public int seriesToCoreIndex(int series) {
#16 9.641     [javac]              ^
#16 9.641     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.641     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 9.641     [javac]                             ^
#16 9.741     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.741     [javac]     return getReader().getCoreMetadataList();
#16 9.741     [javac]                       ^
#16 9.741     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 9.741     [javac]     return getReader().getCoreIndex();
#16 9.741     [javac]                       ^
#16 9.742     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 9.742     [javac]     getReader().setCoreIndex(no);
#16 9.742     [javac]                ^
#16 9.742     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 9.742     [javac]     return getReader().seriesToCoreIndex(series);
#16 9.742     [javac]                       ^
#16 9.742     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 9.742     [javac]     return getReader().coreIndexToSeries(index);
#16 9.742     [javac]                       ^
#16 10.04     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.04     [javac]   public void setCoreIndex(int no) {
#16 10.04     [javac]               ^
#16 10.04     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.04     [javac]   public int getCoreIndex() {
#16 10.04     [javac]              ^
#16 10.04     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 10.04     [javac]   public int coreIndexToSeries(int index) {
#16 10.04     [javac]              ^
#16 10.04     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 10.04     [javac]   public int seriesToCoreIndex(int series) {
#16 10.04     [javac]              ^
#16 10.04     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.04     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 10.04     [javac]                             ^
#16 10.14     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.14     [javac]     List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 10.14     [javac]                                        ^
#16 10.14     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 10.14     [javac]     return reader.getCoreIndex();
#16 10.14     [javac]                  ^
#16 10.14     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 10.14     [javac]     reader.setCoreIndex(no);
#16 10.14     [javac]           ^
#16 10.14     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 10.14     [javac]     return reader.seriesToCoreIndex(series);
#16 10.14     [javac]                  ^
#16 10.14     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 10.14     [javac]     return reader.coreIndexToSeries(index);
#16 10.15     [javac]                  ^
#16 10.30     [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.30     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.30     [javac] 35 warnings
#16 10.30 
#16 10.30 formats-api.jar:
#16 10.30     [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 10.33       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 10.36 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 10.36 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 10.42 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 10.42 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 10.42 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 10.42 
#16 10.42 deps-turbojpeg:
#16 10.42 
#16 10.42 jar-turbojpeg:
#16 10.64      [echo] isSnapshot = true
#16 10.86 
#16 10.86 init-title:
#16 10.86      [echo] ----------=========== turbojpeg ===========----------
#16 10.86 
#16 10.86 init-timestamp:
#16 10.86 
#16 10.86 init:
#16 10.86 
#16 10.86 copy-resources:
#16 10.86     [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 10.86 
#16 10.86 compile:
#16 10.87 [resolver:resolve] Resolving artifacts
#16 10.88     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 11.76 
#16 11.76 jar:
#16 11.77       [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 12.07 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 12.07 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 12.08 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 12.08 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 12.08 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 12.09 
#16 12.09 deps-formats-bsd:
#16 12.09 
#16 12.09 jar-formats-bsd:
#16 12.20      [echo] isSnapshot = true
#16 12.38 
#16 12.38 init-title:
#16 12.38      [echo] ----------=========== formats-bsd ===========----------
#16 12.38 
#16 12.38 init-timestamp:
#16 12.38 
#16 12.38 init:
#16 12.38 
#16 12.38 copy-resources:
#16 12.38     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 12.38      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 12.38 
#16 12.38 compile:
#16 13.67 [resolver:resolve] Resolving artifacts
#16 13.71     [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 17.22     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.22     [javac] import loci.common.ReflectedUniverse;
#16 17.22     [javac]                   ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.72     [javac]       core.size() != reader.getCoreMetadataList().size())
#16 17.72     [javac]                            ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.72     [javac]       List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 17.72     [javac]                                          ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.72     [javac]     int n = reader.getCoreMetadataList().size();
#16 17.72     [javac]                   ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 17.72     [javac]     reader.setCoreIndex(coreIndex);
#16 17.72     [javac]           ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.72     [javac]     int n = reader.getCoreMetadataList().size();
#16 17.72     [javac]                   ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.72     [javac]     int n = reader.getCoreMetadataList().size();
#16 17.72     [javac]                   ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 17.72     [javac]     if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 17.72     [javac]                                         ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.72     [javac]     int n = reader.getCoreMetadataList().size();
#16 17.72     [javac]                   ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 17.72     [javac]     if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 17.72     [javac]                                         ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.72     [javac]     int n = reader.getCoreMetadataList().size();
#16 17.72     [javac]                   ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 17.72     [javac]     if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 17.72     [javac]                                  ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 17.72     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 17.72     [javac]                  ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 17.72     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 17.72     [javac]                                              ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.72     [javac]     return noStitch ? reader.getCoreMetadataList() : core;
#16 17.72     [javac]                             ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.72     [javac]     if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 17.72     [javac]               ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.72     [javac]       seriesCount = reader.getCoreMetadataList().size();
#16 17.72     [javac]                           ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.72     [javac]       if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 17.72     [javac]                 ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.72     [javac]     if (reader.getCoreMetadataList().size() > 1) return 0;
#16 17.72     [javac]               ^
#16 17.72     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.72     [javac]       r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 17.72     [javac]                            ^
#16 17.92     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 17.92     [javac]     int seriesCount = unwrap().getCoreMetadataList().size();
#16 17.92     [javac]                               ^
#16 18.02     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 18.02     [javac]     BitWriter out = new BitWriter();
#16 18.02     [javac]     ^
#16 18.02     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 18.02     [javac]     BitWriter out = new BitWriter();
#16 18.02     [javac]                         ^
#16 19.12     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 19.12     [javac]       OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 19.12     [javac]                                                                    ^
#16 19.12     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 19.12     [javac]     StreamTokenizer st = new StreamTokenizer(in);
#16 19.12     [javac]                          ^
#16 19.32     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 19.32     [javac]     core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 19.32     [javac]                                                    ^
#16 19.32     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.32     [javac]   protected ReflectedUniverse r;
#16 19.32     [javac]             ^
#16 19.32     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 19.32     [javac]       r = new ReflectedUniverse();
#16 19.32     [javac]               ^
#16 19.32     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:948: warning: [deprecation] NM in UNITS has been deprecated
#16 19.32     [javac]           wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 19.32     [javac]                                                                               ^
#16 19.32     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:980: warning: [deprecation] MM in UNITS has been deprecated
#16 19.32     [javac]           sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 19.32     [javac]                                                                                ^
#16 19.32     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:993: warning: [deprecation] MM in UNITS has been deprecated
#16 19.32     [javac]         String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 19.32     [javac]                                                                                   ^
#16 19.32     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:994: warning: [deprecation] MM in UNITS has been deprecated
#16 19.32     [javac]         String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 19.33     [javac]                                                                                   ^
#16 19.33     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1013: warning: [deprecation] MM in UNITS has been deprecated
#16 19.33     [javac]         volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 19.33     [javac]                                                                                        ^
#16 19.33     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1017: warning: [deprecation] MM in UNITS has been deprecated
#16 19.33     [javac]         volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 19.33     [javac]                                                                                         ^
#16 19.33     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1023: warning: [deprecation] MM in UNITS has been deprecated
#16 19.33     [javac]         volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 19.33     [javac]                                                                                        ^
#16 19.33     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1071: warning: [deprecation] MM in UNITS has been deprecated
#16 19.33     [javac]             offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 19.33     [javac]                                                                                                               ^
#16 19.33     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 19.33     [javac]             offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 19.33     [javac]                                                                                                               ^
#16 19.43     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 19.43     [javac]       libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 19.43     [javac]                                        ^
#16 19.53     [javac] Note: Some input files use unchecked or unsafe operations.
#16 19.53     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 19.53     [javac] 38 warnings
#16 19.70 
#16 19.70 formats-bsd.jar:
#16 19.71       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 19.83 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 19.83 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 19.84 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 19.84 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 19.84 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 19.84 
#16 19.84 deps-formats-gpl:
#16 19.84 
#16 19.84 jar-formats-gpl:
#16 19.97      [echo] isSnapshot = true
#16 20.17 
#16 20.17 init-title:
#16 20.17      [echo] ----------=========== formats-gpl ===========----------
#16 20.17 
#16 20.17 init-timestamp:
#16 20.17 
#16 20.17 init:
#16 20.17 
#16 20.17 copy-resources:
#16 20.17     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 20.17      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 20.45 
#16 20.45 compile:
#16 21.17 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 21.42 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 21.53 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 22.10 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 22.34 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 22.35 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 22.37 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 22.51 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 22.88 [resolver:resolve] Resolving artifacts
#16 22.89 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 22.89 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 22.94 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 22.94 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 22.96 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 22.96 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 23.38 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 23.38 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 23.39     [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 25.10     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 25.10     [javac] import loci.formats.codec.BitWriter;
#16 25.10     [javac]                          ^
#16 25.20     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 25.20     [javac] import loci.formats.codec.BitWriter;
#16 25.20     [javac]                          ^
#16 27.20     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 27.20     [javac]       LOGGER.trace("Parsing tokens: {}", tokens);
#16 27.20     [javac]                                          ^
#16 27.20     [javac]   cast to Object for a varargs call
#16 27.20     [javac]   cast to Object[] for a non-varargs call and to suppress this warning
#16 27.30     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 27.30     [javac]     BitWriter bits = null;
#16 27.30     [javac]     ^
#16 27.30     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 27.30     [javac]       bits = new BitWriter(planes[index].length / 8);
#16 27.30     [javac]                  ^
#16 27.61     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 27.61     [javac]     CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 27.61     [javac]                                                    ^
#16 28.01     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 28.01     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 28.01     [javac]     ^
#16 28.01     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 28.01     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 28.01     [javac]                          ^
#16 28.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 28.31     [javac]       List<Attribute> attributes = variable.getAttributes();
#16 28.31     [javac]                                            ^
#16 28.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 28.31     [javac]         toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 28.31     [javac]                               ^
#16 28.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 28.31     [javac]       String groupName = group.getName();
#16 28.31     [javac]                               ^
#16 28.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 28.31     [javac]       List<Attribute> attributes = group.getAttributes();
#16 28.31     [javac]                                         ^
#16 28.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 28.31     [javac]         String attributeName = attribute.getName();
#16 28.31     [javac]                                         ^
#16 28.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 28.31     [javac]         String variableName = variable.getName();
#16 28.31     [javac]                                       ^
#16 28.31     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 28.31     [javac]     netCDFFile = NetcdfFile.open(currentId);
#16 28.31     [javac]                            ^
#16 28.31     [javac] Note: Some input files use unchecked or unsafe operations.
#16 28.31     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 28.31     [javac] 15 warnings
#16 28.43 
#16 28.43 formats-gpl.jar:
#16 28.44       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 28.59 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 28.59 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 28.63 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 28.64 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.68 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 28.68 
#16 28.68 deps-bio-formats-plugins:
#16 28.68 
#16 28.68 jar-bio-formats-plugins:
#16 28.78      [echo] isSnapshot = true
#16 29.02 
#16 29.02 init-title:
#16 29.02      [echo] ----------=========== bio-formats_plugins ===========----------
#16 29.02 
#16 29.02 init-timestamp:
#16 29.02 
#16 29.02 init:
#16 29.02 
#16 29.02 copy-resources:
#16 29.02     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 29.02      [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 29.13 
#16 29.13 compile:
#16 29.42 [resolver:resolve] Resolving artifacts
#16 29.43     [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 31.24     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 31.24     [javac] import loci.common.ReflectedUniverse;
#16 31.24     [javac]                   ^
#16 31.24     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 31.24     [javac] import loci.common.ReflectedUniverse;
#16 31.24     [javac]                   ^
#16 31.84     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 31.84     [javac]     "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 31.84     [javac]                                      ^
#16 32.04     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 32.04     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 32.04     [javac]         ^
#16 32.04     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 32.04     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 32.04     [javac]                                   ^
#16 32.24     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 32.24     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 32.24     [javac]     ^
#16 32.24     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 32.24     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 32.24     [javac]                                ^
#16 32.53     [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 32.53     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 32.53     [javac] 7 warnings
#16 32.53 
#16 32.53 bio-formats-plugins.jar:
#16 32.53       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 32.56 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 32.56 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 32.57 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 32.57 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 32.57 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 32.58 
#16 32.58 deps-bio-formats-tools:
#16 32.58 
#16 32.58 jar-bio-formats-tools:
#16 32.75      [echo] isSnapshot = true
#16 32.93 
#16 32.93 init-title:
#16 32.93      [echo] ----------=========== bio-formats-tools ===========----------
#16 32.93 
#16 32.93 init-timestamp:
#16 32.93 
#16 32.93 init:
#16 32.93 
#16 32.93 copy-resources:
#16 32.93     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 32.93 
#16 32.93 compile:
#16 33.18 [resolver:resolve] Resolving artifacts
#16 33.19     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 34.33 
#16 34.33 bio-formats-tools.jar:
#16 34.33       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 34.34 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 34.34 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 34.39 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 34.39 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 34.44 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 34.64 
#16 34.64 deps-tests:
#16 34.64 
#16 34.64 jar-tests:
#16 34.75      [echo] isSnapshot = true
#16 34.93 
#16 34.93 init-title:
#16 34.93      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 34.93 
#16 34.93 init-timestamp:
#16 34.93 
#16 34.93 init:
#16 34.93 
#16 34.93 copy-resources:
#16 34.93     [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 34.93 
#16 34.93 compile:
#16 35.27 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 35.36 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 35.38 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 35.80 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 36.25 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 36.35 [resolver:resolve] Resolving artifacts
#16 36.36 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 36.40 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 36.42 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 36.83 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 37.21 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 37.25     [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 38.37     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 38.37     [javac]         int index = unflattenedReader.getCoreIndex();
#16 38.37     [javac]                                      ^
#16 38.37     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 38.37     [javac]         reader.setCoreIndex(index);
#16 38.37     [javac]               ^
#16 38.57     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 38.57     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 38.57     [javac]                                              ^
#16 38.57     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 38.57     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 38.57     [javac]                                              ^
#16 38.78     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 38.78     [javac]         FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 38.78     [javac]                                                    ^
#16 38.78     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 38.78     [javac]         FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 38.78     [javac]                                                    ^
#16 38.81     [javac] Note: Some input files use unchecked or unsafe operations.
#16 38.81     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 38.81     [javac] 6 warnings
#16 38.81 
#16 38.81 tests.jar:
#16 38.81       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 38.83 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 38.83 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 38.90 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 38.90 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 38.90 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 38.90 
#16 38.90 jars:
#16 38.90 
#16 38.90 copy-jars:
#16 38.90 
#16 38.90 deps-formats-api:
#16 38.96      [echo] isSnapshot = true
#16 39.01 
#16 39.01 install-pom:
#16 39.25 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 39.26 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 39.26 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 39.26 
#16 39.26 jar-formats-api:
#16 39.35      [echo] isSnapshot = true
#16 39.53 
#16 39.53 init-title:
#16 39.53      [echo] ----------=========== formats-api ===========----------
#16 39.53 
#16 39.53 init-timestamp:
#16 39.53 
#16 39.53 init:
#16 39.53 
#16 39.53 copy-resources:
#16 39.53 
#16 39.53 compile:
#16 39.68 [resolver:resolve] Resolving artifacts
#16 39.69 
#16 39.69 formats-api.jar:
#16 39.71 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 39.71 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 39.71 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 39.71 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 39.72 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 39.72 
#16 39.72 deps-turbojpeg:
#16 39.72 
#16 39.72 jar-turbojpeg:
#16 39.94      [echo] isSnapshot = true
#16 40.10 
#16 40.10 init-title:
#16 40.10      [echo] ----------=========== turbojpeg ===========----------
#16 40.10 
#16 40.10 init-timestamp:
#16 40.10 
#16 40.10 init:
#16 40.10 
#16 40.10 copy-resources:
#16 40.10 
#16 40.10 compile:
#16 40.11 [resolver:resolve] Resolving artifacts
#16 40.12 
#16 40.12 jar:
#16 40.12 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 40.13 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 40.13 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 40.13 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 40.14 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 40.14 
#16 40.14 deps-formats-bsd:
#16 40.14 
#16 40.14 jar-formats-bsd:
#16 40.23      [echo] isSnapshot = true
#16 40.39 
#16 40.39 init-title:
#16 40.39      [echo] ----------=========== formats-bsd ===========----------
#16 40.39 
#16 40.39 init-timestamp:
#16 40.39 
#16 40.39 init:
#16 40.39 
#16 40.39 copy-resources:
#16 40.39 
#16 40.39 compile:
#16 40.59 [resolver:resolve] Resolving artifacts
#16 40.61 
#16 40.61 formats-bsd.jar:
#16 40.65 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 40.65 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 40.65 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 40.65 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 40.66 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 40.66 
#16 40.66 deps-formats-gpl:
#16 40.66 
#16 40.66 jar-formats-gpl:
#16 40.75      [echo] isSnapshot = true
#16 40.93 
#16 40.93 init-title:
#16 40.93      [echo] ----------=========== formats-gpl ===========----------
#16 40.93 
#16 40.93 init-timestamp:
#16 40.93 
#16 40.93 init:
#16 40.93 
#16 40.93 copy-resources:
#16 40.93 
#16 40.93 compile:
#16 41.17 [resolver:resolve] Resolving artifacts
#16 41.18 
#16 41.18 formats-gpl.jar:
#16 41.23 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 41.23 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 41.24 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 41.24 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 41.24 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 41.24 
#16 41.24 deps-bio-formats-plugins:
#16 41.24 
#16 41.24 jar-bio-formats-plugins:
#16 41.35      [echo] isSnapshot = true
#16 41.54 
#16 41.54 init-title:
#16 41.54      [echo] ----------=========== bio-formats_plugins ===========----------
#16 41.54 
#16 41.54 init-timestamp:
#16 41.54 
#16 41.54 init:
#16 41.54 
#16 41.54 copy-resources:
#16 41.54 
#16 41.54 compile:
#16 41.78 [resolver:resolve] Resolving artifacts
#16 41.79 
#16 41.79 bio-formats-plugins.jar:
#16 41.80 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 41.81 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 41.81 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 41.81 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 41.81 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 41.81 
#16 41.81 deps-bio-formats-tools:
#16 41.81 
#16 41.81 jar-bio-formats-tools:
#16 41.90      [echo] isSnapshot = true
#16 42.07 
#16 42.07 init-title:
#16 42.07      [echo] ----------=========== bio-formats-tools ===========----------
#16 42.07 
#16 42.07 init-timestamp:
#16 42.07 
#16 42.07 init:
#16 42.07 
#16 42.07 copy-resources:
#16 42.07 
#16 42.07 compile:
#16 42.31 [resolver:resolve] Resolving artifacts
#16 42.35 
#16 42.35 bio-formats-tools.jar:
#16 42.36 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 42.36 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 42.36 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 42.36 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 42.37 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 42.37 
#16 42.37 deps-tests:
#16 42.37 
#16 42.37 jar-tests:
#16 42.46      [echo] isSnapshot = true
#16 42.63 
#16 42.63 init-title:
#16 42.63      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 42.63 
#16 42.63 init-timestamp:
#16 42.63 
#16 42.63 init:
#16 42.63 
#16 42.63 copy-resources:
#16 42.63 
#16 42.63 compile:
#16 42.88 [resolver:resolve] Resolving artifacts
#16 42.89 
#16 42.89 tests.jar:
#16 42.90 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 42.90 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 42.90 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 42.90 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 42.91 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 42.91 
#16 42.91 jars:
#16 42.91 
#16 42.91 tools:
#16 42.91      [echo] ----------=========== bioformats_package ===========----------
#16 43.07      [echo] isSnapshot = true
#16 43.25 
#16 43.25 init-timestamp:
#16 43.25 
#16 43.25 bundle:
#16 43.50 [resolver:resolve] Resolving artifacts
#16 43.51     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.54     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.23-SNAPSHOT/ome-common-6.0.23-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.57     [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.59     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.64     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 43.80     [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 43.88     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 44.63     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.65     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.71     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.72     [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.73     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.73     [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 44.94     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.54     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.54     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.54     [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.55     [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.64     [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.65     [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.65     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.71     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.89     [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.91     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.4-SNAPSHOT/ome-codecs-1.0.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 45.92     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.16     [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.21/aircompressor-0.21.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.19     [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.27     [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.31     [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.31     [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.35     [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.37     [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.83     [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.85     [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 46.88     [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 47.12     [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 47.39     [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 47.40     [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 47.50     [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 47.51     [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 47.75     [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 47.83     [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 47.90     [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 47.99     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 48.01     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.15     [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.15     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.62     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.62     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#16 48.83     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.84     [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 48.85     [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 49.02     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 49.04     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 49.05     [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 49.06     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 49.07     [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 49.28     [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 50.23     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 50.64     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 51.10       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 57.22    [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 57.87 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 57.88 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 57.88 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 57.91 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 57.92 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 57.93 
#16 57.93 BUILD SUCCESSFUL
#16 57.93 Total time: 56 seconds
#16 DONE 58.9s

#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.1s

#18 exporting to image
#18 exporting layers
#18 exporting layers 23.9s done
#18 writing image sha256:1b7cfbdec74d7e70f7bf136c78b3e1104338d699be45437222e537c4b7a5b9c1 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 23.9s
Finished: SUCCESS