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Started by upstream project "BIOFORMATS-test-repo" build number 270 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins8260257583565050068.sh + '[' lim = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42611_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 11:37:03,102 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:37:03,104 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 11:37:03,104 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:37:03,105 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:37:03,106 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:37:03,106 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:37:03,107 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:37:03,107 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:37:03,107 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:37:03,108 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:37:03,108 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:37:03,109 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:37:03,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:37:03,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:37:03,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:37:03,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:37:03,321 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:37:03,321 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:37:03,321 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:37:03,322 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:37:03,322 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 11:37:03,323 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 11:37:03,323 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 216 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-27 11:37:03,332] [main] java.version = 17.0.2 [testng] 11:37:03,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:37:03,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:03,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_11-37-03.log] [testng] 11:37:03,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-27 11:37:03,386] [main] testng.directory = /data [testng] [2024-11-27 11:37:03,386] [main] testng.configDirectory = /config [testng] [2024-11-27 11:37:03,396] [main] testng.multiplier = 1.0 [testng] [2024-11-27 11:37:03,397] [main] testng.in-memory = false [testng] [2024-11-27 11:37:03,397] [main] testng.allow-missing = false [testng] [2024-11-27 11:37:03,397] [main] user.language = en [testng] [2024-11-27 11:37:03,397] [main] user.country = ${user.country} [testng] [2024-11-27 11:37:03,397] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-27 11:37:03,943] [main] ---------------------------------------- [testng] [2024-11-27 11:37:03,943] [main] Total files: 21 [testng] [2024-11-27 11:37:03,943] [main] Scan time: 0.546 s (26 ms/file) [testng] [2024-11-27 11:37:03,943] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-27 11:37:09,693] [pool-1-thread-1] Initializing /data/venu/Kontrolle0007.lim: [testng] 11:37:09,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:37:09,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:09,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-27_11-37-09.log] [testng] 11:37:09,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22ed7c12 - End of configuration. [testng] [2024-11-27 11:37:09,862] [pool-1-thread-11] Initializing /data/venu/Kontrolle0005.lim: [testng] 11:37:09,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:37:09,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:09,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-27_11-37-09.log] [testng] 11:37:09,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15d0e02f - End of configuration. [testng] [2024-11-27 11:37:09,981] [pool-1-thread-12] Initializing /data/venu/Kontrolle0003.lim: [testng] 11:37:09,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:37:09,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:09,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-27_11-37-09.log] [testng] 11:37:09,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@386870bb - End of configuration. [testng] [2024-11-27 11:37:10,128] [pool-1-thread-10] Initializing /data/venu/Kontrolle0012.lim: [testng] 11:37:10,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:37:10,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:10,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-27_11-37-10.log] [testng] 11:37:10,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d56e6bd - End of configuration. [testng] [2024-11-27 11:37:10,301] [pool-1-thread-9] Initializing /data/venu/Kontrolle0008.lim: [testng] 11:37:10,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:37:10,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:10,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-27_11-37-10.log] [testng] 11:37:10,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5df9fdb - End of configuration. [testng] [2024-11-27 11:37:10,420] [pool-1-thread-8] Initializing /data/venu/Kontrolle0021.lim: [testng] 11:37:10,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:37:10,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:10,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-27_11-37-10.log] [testng] 11:37:10,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8f8cdc8 - End of configuration. [testng] [2024-11-27 11:37:10,772] [pool-1-thread-7] Initializing /data/venu/Kontrolle0010.lim: [testng] 11:37:10,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:37:10,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:10,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-27_11-37-10.log] [testng] 11:37:10,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d67eb11 - End of configuration. [testng] [2024-11-27 11:37:11,122] [pool-1-thread-6] Initializing /data/venu/Kontrolle0016.lim: [testng] 11:37:11,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:37:11,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:11,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-27_11-37-11.log] [testng] 11:37:11,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64a0f473 - End of configuration. [testng] [2024-11-27 11:37:11,350] [pool-1-thread-5] Initializing /data/venu/Kontrolle0017.lim: [testng] 11:37:11,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:37:11,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:11,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-27_11-37-11.log] [testng] 11:37:11,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e4b1267 - End of configuration. [testng] [2024-11-27 11:37:11,518] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim: [testng] 11:37:11,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:37:11,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:11,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-27_11-37-11.log] [testng] 11:37:11,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aa4df47 - End of configuration. [testng] [2024-11-27 11:37:11,637] [pool-1-thread-3] Initializing /data/venu/Kontrolle0014.lim: [testng] 11:37:11,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:37:11,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:11,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-27_11-37-11.log] [testng] 11:37:11,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b12ea97 - End of configuration. [testng] [2024-11-27 11:37:11,832] [pool-1-thread-2] Initializing /data/venu/Kontrolle0001.lim: [testng] 11:37:11,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:37:11,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:11,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-27_11-37-11.log] [testng] 11:37:11,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@365b870d - End of configuration. [testng] [2024-11-27 11:37:16,987] [pool-1-thread-5] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-11-27 11:37:17,671] [pool-1-thread-6] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-11-27 11:37:17,895] [pool-1-thread-2] Initializing /data/venu/Kontrolle0020.lim: [testng] [2024-11-27 11:37:18,100] [pool-1-thread-8] Initializing /data/venu/Kontrolle0013.lim: [testng] [2024-11-27 11:37:18,198] [pool-1-thread-1] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-11-27 11:37:18,306] [pool-1-thread-9] Initializing /data/venu/Kontrolle0019.lim: [testng] [2024-11-27 11:37:18,460] [pool-1-thread-12] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-11-27 11:37:18,577] [pool-1-thread-7] Initializing /data/venu/Kontrolle0018.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS