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Started by upstream project "BIOFORMATS-test-repo" build number 57 originally caused by: Started by upstream project "Trigger" build number 64 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins6554637240658701783.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8471_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:25:18,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:25:18,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:25:18,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:25:18,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:25:18,160 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:25:18,160 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:25:18,160 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:25:18,161 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:25:18,161 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration. [testng] 02:25:18,162 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point [testng] 02:25:18,162 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 508 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-08 02:25:18,181] [main] java.version = 17.0.2 [testng] 02:25:18,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:25:18,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:18,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-08_02-25-18.log] [testng] 02:25:18,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-05-08 02:25:18,417] [main] testng.directory = /data [testng] [2024-05-08 02:25:18,417] [main] testng.configDirectory = /config [testng] [2024-05-08 02:25:18,542] [main] testng.multiplier = 1.0 [testng] [2024-05-08 02:25:18,543] [main] testng.in-memory = false [testng] [2024-05-08 02:25:18,543] [main] testng.allow-missing = false [testng] [2024-05-08 02:25:18,543] [main] user.language = en [testng] [2024-05-08 02:25:18,543] [main] user.country = ${user.country} [testng] [2024-05-08 02:25:18,543] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-08 02:25:20,576] [main] ---------------------------------------- [testng] [2024-05-08 02:25:20,576] [main] Total files: 32 [testng] [2024-05-08 02:25:20,576] [main] Scan time: 2.033 s (63 ms/file) [testng] [2024-05-08 02:25:20,576] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-08 02:25:24,123] [pool-1-thread-1] Initializing /data/david/Opened in imageJ.tiff: [testng] 02:25:24,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:25:24,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:24,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-08_02-25-24.log] [testng] 02:25:24,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f528036 - End of configuration. [testng] [2024-05-08 02:25:24,190] [pool-1-thread-12] Initializing /data/keith/test2.1sc: [testng] 02:25:24,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:25:24,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:24,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-08_02-25-24.log] [testng] 02:25:24,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ca02fd7 - End of configuration. [testng] [2024-05-08 02:25:24,224] [pool-1-thread-11] Initializing /data/keith/PF020328saur v3.1sc: [testng] 02:25:24,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:25:24,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:24,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-08_02-25-24.log] [testng] 02:25:24,227 |-INFO in ch.qos.logback.core.sift.SiftProcessor@233450a3 - End of configuration. [testng] [2024-05-08 02:25:24,246] [pool-1-thread-10] Initializing /data/geert/bad example1.jpg: [testng] 02:25:24,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:25:24,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:24,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-08_02-25-24.log] [testng] 02:25:24,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60bac8d9 - End of configuration. [testng] [2024-05-08 02:25:24,306] [pool-1-thread-9] Initializing /data/adrian/test_img.1sc: [testng] 02:25:24,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:25:24,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:24,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-08_02-25-24.log] [testng] 02:25:24,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7112b02a - End of configuration. [testng] [2024-05-08 02:25:24,358] [pool-1-thread-8] Initializing /data/geert/bad example1.1sc: [testng] 02:25:24,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:25:24,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:24,359 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-08_02-25-24.log] [testng] 02:25:24,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65c5243f - End of configuration. [testng] [2024-05-08 02:25:24,408] [pool-1-thread-7] Initializing /data/geert/good example1.1sc: [testng] 02:25:24,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:25:24,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:24,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-08_02-25-24.log] [testng] 02:25:24,410 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40103fab - End of configuration. [testng] [2024-05-08 02:25:24,493] [pool-1-thread-6] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] 02:25:24,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:25:24,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:24,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-08_02-25-24.log] [testng] 02:25:24,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20b3b008 - End of configuration. [testng] [2024-05-08 02:25:24,540] [pool-1-thread-5] Initializing /data/qa-16880/c-src v7.1sc: [testng] 02:25:24,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:25:24,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:24,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-08_02-25-24.log] [testng] 02:25:24,542 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e00f3cb - End of configuration. [testng] [2024-05-08 02:25:24,585] [pool-1-thread-4] Initializing /data/keith/test.1sc: [testng] 02:25:24,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:25:24,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:24,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-08_02-25-24.log] [testng] 02:25:24,587 |-INFO in ch.qos.logback.core.sift.SiftProcessor@640fd262 - End of configuration. [testng] [2024-05-08 02:25:24,618] [pool-1-thread-3] Initializing /data/qa-29459/bad.1sc: [testng] 02:25:24,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:25:24,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:24,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-08_02-25-24.log] [testng] 02:25:24,620 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d059742 - End of configuration. [testng] [2024-05-08 02:25:24,663] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] 02:25:24,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:25:24,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:24,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-08_02-25-24.log] [testng] 02:25:24,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@96d371b - End of configuration. [testng] [2024-05-08 02:25:27,013] [pool-1-thread-11] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-05-08 02:25:27,095] [pool-1-thread-4] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2024-05-08 02:25:27,160] [pool-1-thread-12] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] [2024-05-08 02:25:27,183] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2024-05-08 02:25:27,224] [pool-1-thread-1] Initializing /data/geert/good example1.1sc.jpg: [testng] [2024-05-08 02:25:27,352] [pool-1-thread-5] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2024-05-08 02:25:27,382] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2024-05-08 02:25:27,546] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] [2024-05-08 02:25:27,814] [pool-1-thread-8] Initializing /data/geert/bad example1.1sc.jpg: [testng] [2024-05-08 02:25:27,855] [pool-1-thread-7] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2024-05-08 02:25:27,891] [pool-1-thread-9] Initializing /data/qa-29459/bad.jpg: [testng] [2024-05-08 02:25:27,905] [pool-1-thread-2] Initializing /data/keith/pg020410saur3.1sc: [testng] [2024-05-08 02:25:28,244] [pool-1-thread-12] Initializing /data/samples/imagesEight.1sc: [testng] [2024-05-08 02:25:28,267] [pool-1-thread-5] Initializing /data/samples/Criterion.1sc: [testng] [2024-05-08 02:25:28,554] [pool-1-thread-1] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] [2024-05-08 02:25:28,625] [pool-1-thread-2] Initializing /data/qa-29469/good.1sc: [testng] [2024-05-08 02:25:28,754] [pool-1-thread-9] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] [2024-05-08 02:25:28,859] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2024-05-08 02:25:29,047] [pool-1-thread-3] Initializing /data/qa-29469/bad2.1sc: [testng] [2024-05-08 02:25:29,113] [pool-1-thread-12] Initializing /data/qa-29469/bad3.1sc: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS