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Started by upstream project "BIOFORMATS-test-repo" build number 57 originally caused by: Started by upstream project "Trigger" build number 64 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins18194121021078055427.sh + '[' nikon-jp2 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8483_merge_ci -v /uod/idr/repos/curated/nikon-jp2:/data -v /uod/idr-scratch/merge-ci/curated/nikon-jp2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:38:45,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:38:45,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:38:45,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:38:45,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:38:45,459 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:38:45,459 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:38:45,459 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:38:45,459 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:38:45,460 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration. [testng] 02:38:45,460 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point [testng] 02:38:45,460 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 459 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-08 02:38:45,469] [main] java.version = 17.0.2 [testng] 02:38:45,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:38:45,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:45,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-08_02-38-45.log] [testng] 02:38:45,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-05-08 02:38:45,879] [main] testng.directory = /data [testng] [2024-05-08 02:38:45,880] [main] testng.configDirectory = /config [testng] [2024-05-08 02:38:46,016] [main] testng.multiplier = 1.0 [testng] [2024-05-08 02:38:46,017] [main] testng.in-memory = false [testng] [2024-05-08 02:38:46,017] [main] testng.allow-missing = false [testng] [2024-05-08 02:38:46,017] [main] user.language = en [testng] [2024-05-08 02:38:46,017] [main] user.country = ${user.country} [testng] [2024-05-08 02:38:46,017] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-08 02:38:47,028] [main] ---------------------------------------- [testng] [2024-05-08 02:38:47,028] [main] Total files: 11 [testng] [2024-05-08 02:38:47,028] [main] Scan time: 1.011 s (91 ms/file) [testng] [2024-05-08 02:38:47,028] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 11 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-08 02:38:48,628] [pool-1-thread-1] Initializing /data/kira/DapiFitcTexRed008B.tif: [testng] 02:38:48,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:38:48,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:48,630 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-08_02-38-48.log] [testng] 02:38:48,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d57e62d - End of configuration. [testng] [2024-05-08 02:38:48,694] [pool-1-thread-11] Initializing /data/kira/DapiFitcTexRed008.jp2: [testng] 02:38:48,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:38:48,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:48,695 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-08_02-38-48.log] [testng] 02:38:48,696 |-INFO in ch.qos.logback.core.sift.SiftProcessor@128c634 - End of configuration. [testng] [2024-05-08 02:38:48,846] [pool-1-thread-10] Initializing /data/kira/DapiFitcTexRed003.jpg: [testng] 02:38:48,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:38:48,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:48,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-08_02-38-48.log] [testng] 02:38:48,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@774ea3cd - End of configuration. [testng] [2024-05-08 02:38:48,902] [pool-1-thread-9] Initializing /data/kira/DapiFitcTexRed006.png: [testng] 02:38:48,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:38:48,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:48,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-08_02-38-48.log] [testng] 02:38:48,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f2bed2 - End of configuration. [testng] [2024-05-08 02:38:48,917] [pool-1-thread-8] Initializing /data/kira/DapiFitcTexRed004.tif: [testng] 02:38:48,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:38:48,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:48,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-08_02-38-48.log] [testng] 02:38:48,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b3c3205 - End of configuration. [testng] [2024-05-08 02:38:48,997] [pool-1-thread-7] Initializing /data/kira/DapiFitcTexRed008R.tif: [testng] 02:38:48,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:38:48,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:48,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-08_02-38-48.log] [testng] 02:38:48,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fb4087f - End of configuration. [testng] [2024-05-08 02:38:49,096] [pool-1-thread-6] Initializing /data/kira/DapiFitcTexRed008BGR.tif: [testng] 02:38:49,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:38:49,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:49,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-08_02-38-49.log] [testng] 02:38:49,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2789c168 - End of configuration. [testng] [2024-05-08 02:38:49,180] [pool-1-thread-5] Initializing /data/kira/DapiFitcTexRed007.gif: [testng] 02:38:49,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:38:49,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:49,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-08_02-38-49.log] [testng] 02:38:49,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23ebac54 - End of configuration. [testng] [2024-05-08 02:38:49,199] [pool-1-thread-4] Initializing /data/kira/DapiFitcTexRed005.bmp: [testng] 02:38:49,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:38:49,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:49,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-08_02-38-49.log] [testng] 02:38:49,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68dac730 - End of configuration. [testng] [2024-05-08 02:38:49,212] [pool-1-thread-3] Initializing /data/kira/DapiFitcTexRed008G.tif: [testng] 02:38:49,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:38:49,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:49,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-08_02-38-49.log] [testng] 02:38:49,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b37d478 - End of configuration. [testng] [2024-05-08 02:38:49,284] [pool-1-thread-2] Initializing /data/kira/DapiFitcTexRed001.jp2: [testng] 02:38:49,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:38:49,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:49,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-08_02-38-49.log] [testng] 02:38:49,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d2cdf4d - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 583, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 31 seconds Finished: SUCCESS