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Started by upstream project "BIOFORMATS-test-repo" build number 66 originally caused by: Started by upstream project "Trigger" build number 74 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins3245199176972932543.sh + '[' apng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9940_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:00:54,934 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:00:54,937 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 09:00:54,937 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:00:54,939 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:00:54,939 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:00:54,940 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:00:54,940 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:00:54,940 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:00:54,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:00:54,942 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:00:54,942 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:00:54,942 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:00:55,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:00:55,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:00:55,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:00:55,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:00:55,283 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:00:55,284 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:00:55,284 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:00:55,285 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:00:55,285 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 09:00:55,286 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 09:00:55,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 345 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-17 09:00:55,300] [main] java.version = 1.8.0_342 [testng] 09:00:55,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:00:55,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:00:55,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_09-00-55.log] [testng] 09:00:55,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-17 09:00:55,361] [main] testng.directory = /data [testng] [2024-05-17 09:00:55,362] [main] testng.configDirectory = /config [testng] [2024-05-17 09:00:55,378] [main] testng.multiplier = 1.0 [testng] [2024-05-17 09:00:55,378] [main] testng.in-memory = false [testng] [2024-05-17 09:00:55,378] [main] testng.allow-missing = false [testng] [2024-05-17 09:00:55,378] [main] user.language = en [testng] [2024-05-17 09:00:55,379] [main] user.country = ${user.country} [testng] [2024-05-17 09:00:55,379] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-17 09:00:56,093] [main] ---------------------------------------- [testng] [2024-05-17 09:00:56,093] [main] Total files: 21 [testng] [2024-05-17 09:00:56,093] [main] Scan time: 0.714 s (34 ms/file) [testng] [2024-05-17 09:00:56,094] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-17 09:00:57,970] [pool-1-thread-1] Initializing /data/samples/Sun.png: [testng] 09:00:57,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:00:57,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:00:57,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_09-00-57.log] [testng] 09:00:57,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21a4f3b4 - End of configuration. [testng] [2024-05-17 09:00:58,029] [pool-1-thread-12] Initializing /data/samples/atom.png: [testng] 09:00:58,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:00:58,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:00:58,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_09-00-58.log] [testng] 09:00:58,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68de8d48 - End of configuration. [testng] [2024-05-17 09:00:58,043] [pool-1-thread-11] Initializing /data/samples/orbit.png: [testng] 09:00:58,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:00:58,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:00:58,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_09-00-58.log] [testng] 09:00:58,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12b4a65b - End of configuration. [testng] [2024-05-17 09:00:58,057] [pool-1-thread-10] Initializing /data/samples/monkey_apng.png: [testng] 09:00:58,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:00:58,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:00:58,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_09-00-58.log] [testng] 09:00:58,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39b93425 - End of configuration. [testng] [2024-05-17 09:00:58,067] [pool-1-thread-9] Initializing /data/qa-7473/x.png: [testng] 09:00:58,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:00:58,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:00:58,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_09-00-58.log] [testng] 09:00:58,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ce2fd39 - End of configuration. [testng] [2024-05-17 09:00:58,076] [pool-1-thread-8] Initializing /data/samples/william_wong04.png: [testng] 09:00:58,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:00:58,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:00:58,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_09-00-58.log] [testng] 09:00:58,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@177ea8d7 - End of configuration. [testng] [2024-05-17 09:00:58,086] [pool-1-thread-7] Initializing /data/samples/daniel_coltri_two.png: [testng] 09:00:58,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:00:58,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:00:58,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_09-00-58.log] [testng] 09:00:58,088 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d626eb7 - End of configuration. [testng] [2024-05-17 09:00:58,095] [pool-1-thread-6] Initializing /data/qa-7473/n.tif: [testng] 09:00:58,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:00:58,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:00:58,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_09-00-58.log] [testng] 09:00:58,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4279d29d - End of configuration. [testng] [2024-05-17 09:00:58,144] [pool-1-thread-5] Initializing /data/samples/MoonPhases.png: [testng] 09:00:58,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:00:58,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:00:58,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_09-00-58.log] [testng] 09:00:58,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b5917c7 - End of configuration. [testng] [2024-05-17 09:00:58,159] [pool-1-thread-3] Initializing /data/samples/Matrix.png: [testng] 09:00:58,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:00:58,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:00:58,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_09-00-58.log] [testng] 09:00:58,164 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56e95f54 - End of configuration. [testng] [2024-05-17 09:00:58,175] [pool-1-thread-4] Initializing /data/samples/joanna_viera01.png: [testng] 09:00:58,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:00:58,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:00:58,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_09-00-58.log] [testng] 09:00:58,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a10c4ca - End of configuration. [testng] [2024-05-17 09:00:58,184] [pool-1-thread-2] Initializing /data/samples/phug_logo.png: [testng] 09:00:58,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:00:58,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:00:58,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_09-00-58.log] [testng] 09:00:58,186 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b4b3397 - End of configuration. [testng] [2024-05-17 09:01:00,109] [pool-1-thread-9] Initializing /data/samples/william_wong02.png: [testng] [2024-05-17 09:01:00,119] [pool-1-thread-8] Initializing /data/samples/spinfox.png: [testng] [2024-05-17 09:01:00,124] [pool-1-thread-12] Initializing /data/samples/william_wong01.png: [testng] [2024-05-17 09:01:00,131] [pool-1-thread-5] Initializing /data/samples/william_wong05.png: [testng] [2024-05-17 09:01:00,141] [pool-1-thread-2] Initializing /data/colin/test.sfstdge.png: [testng] [2024-05-17 09:01:00,146] [pool-1-thread-11] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-05-17 09:01:00,153] [pool-1-thread-3] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-05-17 09:01:00,161] [pool-1-thread-1] Initializing /data/samples/chompy2.png: [testng] [2024-05-17 09:01:00,166] [pool-1-thread-10] Initializing /data/samples/StarV838.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS